IMP Reference Guide
2.20.0
The Integrative Modeling Platform
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This is the complete list of members for IMP::pmi::CrossLinkRestraintSet, including all inherited members.
add_restraint(Restraint *obj) (defined in IMP::RestraintSet) | IMP::RestraintSet | |
add_restraints(const Restraints &objs) (defined in IMP::RestraintSet) | IMP::RestraintSet | |
clear_caches() | IMP::Object | virtual |
clear_restraints() (defined in IMP::RestraintSet) | IMP::RestraintSet | |
create_current_decomposition() const | IMP::Restraint | |
create_decomposition() const | IMP::Restraint | |
create_scoring_function(double weight=1.0, double max=NO_MAX) const | IMP::Restraint | virtual |
CrossLinkRestraintSet(Model *m, const std::string &name="CrossLinkRestraintSet %1%") (defined in IMP::pmi::CrossLinkRestraintSet) | IMP::pmi::CrossLinkRestraintSet | |
CrossLinkRestraintSet() (defined in IMP::pmi::CrossLinkRestraintSet) | IMP::pmi::CrossLinkRestraintSet | |
do_add_score_and_derivatives(ScoreAccumulator sa) const (defined in IMP::Restraint) | IMP::Restraint | protectedvirtual |
do_add_score_and_derivatives_moved(ScoreAccumulator sa, const ParticleIndexes &moved_pis, const ParticleIndexes &reset_pis) const (defined in IMP::Restraint) | IMP::Restraint | protectedvirtual |
do_create_current_decomposition() const | IMP::Restraint | protectedvirtual |
do_create_decomposition() const | IMP::Restraint | protectedvirtual |
do_destroy() | IMP::Object | protectedvirtual |
do_get_inputs() const =0 | IMP::ModelObject | protectedpure virtual |
do_get_interactions() const | IMP::ModelObject | protectedvirtual |
do_get_outputs() const override | IMP::Restraint | protectedvirtual |
erase_restraint(unsigned int i) (defined in IMP::RestraintSet) | IMP::RestraintSet | |
evaluate(bool calc_derivs) const | IMP::Restraint | |
evaluate_if_below(bool calc_derivatives, double max) const | IMP::Restraint | |
evaluate_if_good(bool calc_derivatives) const | IMP::Restraint | |
evaluate_moved(bool calc_derivs, const ParticleIndexes &moved_pis, const ParticleIndexes &reset_pis) const | IMP::Restraint | |
evaluate_moved_if_below(bool calc_derivatives, const ParticleIndexes &moved_pis, const ParticleIndexes &reset_pis, double max) const | IMP::Restraint | |
evaluate_moved_if_good(bool calc_derivatives, const ParticleIndexes &moved_pis, const ParticleIndexes &reset_pis) const | IMP::Restraint | |
get_check_level() const (defined in IMP::Object) | IMP::Object | |
get_dynamic_info() const | IMP::Restraint | virtual |
get_has_dependencies() const | IMP::ModelObject | |
get_has_required_score_states() const | IMP::ModelObject | |
get_has_restraints() (defined in IMP::RestraintSet) | IMP::RestraintSet | |
get_inputs() const | IMP::ModelObject | |
get_interactions() const | IMP::ModelObject | |
get_is_aggregate() const | IMP::Restraint | |
get_last_last_score() const | IMP::Restraint | |
get_last_score() const override | IMP::RestraintSet | virtual |
get_log_level() const (defined in IMP::Object) | IMP::Object | |
get_maximum_score() const (defined in IMP::Restraint) | IMP::Restraint | |
get_model() const (defined in IMP::ModelObject) | IMP::ModelObject | |
get_name() const (defined in IMP::Object) | IMP::Object | |
get_non_sets_and_sets() const | IMP::RestraintSet | |
get_number_of_restraints() const (defined in IMP::RestraintSet) | IMP::RestraintSet | |
get_outputs() const | IMP::ModelObject | |
get_required_score_states() const | IMP::ModelObject | |
get_restraint(unsigned int i) const (defined in IMP::RestraintSet) | IMP::RestraintSet | |
get_restraints() const (defined in IMP::RestraintSet) | IMP::RestraintSet | |
get_score() const | IMP::Restraint | |
get_static_info() const override | IMP::pmi::CrossLinkRestraintSet | virtual |
get_type_name() const override (defined in IMP::pmi::CrossLinkRestraintSet) | IMP::pmi::CrossLinkRestraintSet | virtual |
get_version_info() const override | IMP::pmi::CrossLinkRestraintSet | virtual |
get_was_good() const | IMP::Restraint | |
get_weight() const (defined in IMP::Restraint) | IMP::Restraint | |
handle_set_has_required_score_states(bool) | IMP::ModelObject | protectedvirtual |
is_aggregate_ (defined in IMP::Restraint) | IMP::Restraint | protected |
ModelObject(Model *m, std::string name) (defined in IMP::ModelObject) | IMP::ModelObject | |
ModelObject() (defined in IMP::ModelObject) | IMP::ModelObject | |
NonCopyable() (defined in IMP::NonCopyable) | IMP::NonCopyable | protected |
Object(std::string name) | IMP::Object | protected |
remove_restraint(Restraint *d) (defined in IMP::RestraintSet) | IMP::RestraintSet | |
remove_restraints(const Restraints &d) (defined in IMP::RestraintSet) | IMP::RestraintSet | |
reserve_restraints(unsigned int sz) (defined in IMP::RestraintSet) | IMP::RestraintSet | |
Restraint(Model *m, std::string name) | IMP::Restraint | |
Restraint() | IMP::Restraint | |
restraints | IMP::RestraintSet | |
RestraintSet(Model *m, double weight, const std::string &name="RestraintSet %1%") | IMP::RestraintSet | |
RestraintSet(Model *m, const std::string &name="RestraintSet %1%") | IMP::RestraintSet | |
RestraintSet(const RestraintsTemp &rs, double weight, const std::string &name="RestraintSet %1%") | IMP::RestraintSet | |
RestraintSet() (defined in IMP::RestraintSet) | IMP::RestraintSet | |
set_check_level(CheckLevel l) | IMP::Object | |
set_has_dependencies(bool tf) | IMP::ModelObject | |
set_has_required_score_states(bool tf) | IMP::ModelObject | |
set_linker_auth_name(std::string name) (defined in IMP::pmi::CrossLinkRestraintSet) | IMP::pmi::CrossLinkRestraintSet | |
set_linker_chemical_name(std::string name) (defined in IMP::pmi::CrossLinkRestraintSet) | IMP::pmi::CrossLinkRestraintSet | |
set_linker_inchi(std::string name) (defined in IMP::pmi::CrossLinkRestraintSet) | IMP::pmi::CrossLinkRestraintSet | |
set_linker_inchi_key(std::string name) (defined in IMP::pmi::CrossLinkRestraintSet) | IMP::pmi::CrossLinkRestraintSet | |
set_linker_smiles(std::string name) (defined in IMP::pmi::CrossLinkRestraintSet) | IMP::pmi::CrossLinkRestraintSet | |
set_linker_smiles_canonical(std::string name) (defined in IMP::pmi::CrossLinkRestraintSet) | IMP::pmi::CrossLinkRestraintSet | |
set_log_level(LogLevel l) | IMP::Object | |
set_maximum_score(double s) (defined in IMP::Restraint) | IMP::Restraint | |
set_metadata(std::string filename, double length, double slope) (defined in IMP::pmi::CrossLinkRestraintSet) | IMP::pmi::CrossLinkRestraintSet | |
set_name(std::string name) (defined in IMP::Object) | IMP::Object | |
set_restraints(const Restraints &ps) (defined in IMP::RestraintSet) | IMP::RestraintSet | |
set_restraints_order(const Restraints &objs) (defined in IMP::RestraintSet) | IMP::RestraintSet | |
set_was_used(bool tf) const | IMP::Object | |
set_weight(Float weight) (defined in IMP::Restraint) | IMP::Restraint | |
show(std::ostream &out=std::cout) const (defined in IMP::Object) | IMP::Object | |
unprotected_evaluate(DerivativeAccumulator *da) const override | IMP::RestraintSet | virtual |
unprotected_evaluate_if_below(DerivativeAccumulator *da, double max) const | IMP::Restraint | virtual |
unprotected_evaluate_if_good(DerivativeAccumulator *da, double max) const | IMP::Restraint | virtual |
unprotected_evaluate_moved(DerivativeAccumulator *da, const ParticleIndexes &moved_pis, const ParticleIndexes &reset_pis) const | IMP::Restraint | virtual |
unprotected_evaluate_moved_if_below(DerivativeAccumulator *da, const ParticleIndexes &moved_pis, const ParticleIndexes &reset_pis, double max) const (defined in IMP::Restraint) | IMP::Restraint | virtual |
unprotected_evaluate_moved_if_good(DerivativeAccumulator *da, const ParticleIndexes &moved_pis, const ParticleIndexes &reset_pis, double max) const (defined in IMP::Restraint) | IMP::Restraint | virtual |
~CrossLinkRestraintSet() (defined in IMP::pmi::CrossLinkRestraintSet) | IMP::pmi::CrossLinkRestraintSet | virtual |
~ModelObject() (defined in IMP::ModelObject) | IMP::ModelObject | |
~Object() (defined in IMP::Object) | IMP::Object | virtual |
~RestraintSet() (defined in IMP::RestraintSet) | IMP::RestraintSet | virtual |