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IMP Reference Guide  2.20.0
The Integrative Modeling Platform
IMP::pmi::CrossLinkRestraintSet Member List

This is the complete list of members for IMP::pmi::CrossLinkRestraintSet, including all inherited members.

add_restraint(Restraint *obj) (defined in IMP::RestraintSet)IMP::RestraintSet
add_restraints(const Restraints &objs) (defined in IMP::RestraintSet)IMP::RestraintSet
clear_caches()IMP::Objectvirtual
clear_restraints() (defined in IMP::RestraintSet)IMP::RestraintSet
create_current_decomposition() const IMP::Restraint
create_decomposition() const IMP::Restraint
create_scoring_function(double weight=1.0, double max=NO_MAX) const IMP::Restraintvirtual
CrossLinkRestraintSet(Model *m, const std::string &name="CrossLinkRestraintSet %1%") (defined in IMP::pmi::CrossLinkRestraintSet)IMP::pmi::CrossLinkRestraintSet
CrossLinkRestraintSet() (defined in IMP::pmi::CrossLinkRestraintSet)IMP::pmi::CrossLinkRestraintSet
do_add_score_and_derivatives(ScoreAccumulator sa) const (defined in IMP::Restraint)IMP::Restraintprotectedvirtual
do_add_score_and_derivatives_moved(ScoreAccumulator sa, const ParticleIndexes &moved_pis, const ParticleIndexes &reset_pis) const (defined in IMP::Restraint)IMP::Restraintprotectedvirtual
do_create_current_decomposition() const IMP::Restraintprotectedvirtual
do_create_decomposition() const IMP::Restraintprotectedvirtual
do_destroy()IMP::Objectprotectedvirtual
do_get_inputs() const =0IMP::ModelObjectprotectedpure virtual
do_get_interactions() const IMP::ModelObjectprotectedvirtual
do_get_outputs() const overrideIMP::Restraintprotectedvirtual
erase_restraint(unsigned int i) (defined in IMP::RestraintSet)IMP::RestraintSet
evaluate(bool calc_derivs) const IMP::Restraint
evaluate_if_below(bool calc_derivatives, double max) const IMP::Restraint
evaluate_if_good(bool calc_derivatives) const IMP::Restraint
evaluate_moved(bool calc_derivs, const ParticleIndexes &moved_pis, const ParticleIndexes &reset_pis) const IMP::Restraint
evaluate_moved_if_below(bool calc_derivatives, const ParticleIndexes &moved_pis, const ParticleIndexes &reset_pis, double max) const IMP::Restraint
evaluate_moved_if_good(bool calc_derivatives, const ParticleIndexes &moved_pis, const ParticleIndexes &reset_pis) const IMP::Restraint
get_check_level() const (defined in IMP::Object)IMP::Object
get_dynamic_info() const IMP::Restraintvirtual
get_has_dependencies() const IMP::ModelObject
get_has_required_score_states() const IMP::ModelObject
get_has_restraints() (defined in IMP::RestraintSet)IMP::RestraintSet
get_inputs() const IMP::ModelObject
get_interactions() const IMP::ModelObject
get_is_aggregate() const IMP::Restraint
get_last_last_score() const IMP::Restraint
get_last_score() const overrideIMP::RestraintSetvirtual
get_log_level() const (defined in IMP::Object)IMP::Object
get_maximum_score() const (defined in IMP::Restraint)IMP::Restraint
get_model() const (defined in IMP::ModelObject)IMP::ModelObject
get_name() const (defined in IMP::Object)IMP::Object
get_non_sets_and_sets() const IMP::RestraintSet
get_number_of_restraints() const (defined in IMP::RestraintSet)IMP::RestraintSet
get_outputs() const IMP::ModelObject
get_required_score_states() const IMP::ModelObject
get_restraint(unsigned int i) const (defined in IMP::RestraintSet)IMP::RestraintSet
get_restraints() const (defined in IMP::RestraintSet)IMP::RestraintSet
get_score() const IMP::Restraint
get_static_info() const overrideIMP::pmi::CrossLinkRestraintSetvirtual
get_type_name() const override (defined in IMP::pmi::CrossLinkRestraintSet)IMP::pmi::CrossLinkRestraintSetvirtual
get_version_info() const overrideIMP::pmi::CrossLinkRestraintSetvirtual
get_was_good() const IMP::Restraint
get_weight() const (defined in IMP::Restraint)IMP::Restraint
handle_set_has_required_score_states(bool)IMP::ModelObjectprotectedvirtual
is_aggregate_ (defined in IMP::Restraint)IMP::Restraintprotected
ModelObject(Model *m, std::string name) (defined in IMP::ModelObject)IMP::ModelObject
ModelObject() (defined in IMP::ModelObject)IMP::ModelObject
NonCopyable() (defined in IMP::NonCopyable)IMP::NonCopyableprotected
Object(std::string name)IMP::Objectprotected
remove_restraint(Restraint *d) (defined in IMP::RestraintSet)IMP::RestraintSet
remove_restraints(const Restraints &d) (defined in IMP::RestraintSet)IMP::RestraintSet
reserve_restraints(unsigned int sz) (defined in IMP::RestraintSet)IMP::RestraintSet
Restraint(Model *m, std::string name)IMP::Restraint
Restraint()IMP::Restraint
restraintsIMP::RestraintSet
RestraintSet(Model *m, double weight, const std::string &name="RestraintSet %1%")IMP::RestraintSet
RestraintSet(Model *m, const std::string &name="RestraintSet %1%")IMP::RestraintSet
RestraintSet(const RestraintsTemp &rs, double weight, const std::string &name="RestraintSet %1%")IMP::RestraintSet
RestraintSet() (defined in IMP::RestraintSet)IMP::RestraintSet
set_check_level(CheckLevel l)IMP::Object
set_has_dependencies(bool tf)IMP::ModelObject
set_has_required_score_states(bool tf)IMP::ModelObject
set_linker_auth_name(std::string name) (defined in IMP::pmi::CrossLinkRestraintSet)IMP::pmi::CrossLinkRestraintSet
set_linker_chemical_name(std::string name) (defined in IMP::pmi::CrossLinkRestraintSet)IMP::pmi::CrossLinkRestraintSet
set_linker_inchi(std::string name) (defined in IMP::pmi::CrossLinkRestraintSet)IMP::pmi::CrossLinkRestraintSet
set_linker_inchi_key(std::string name) (defined in IMP::pmi::CrossLinkRestraintSet)IMP::pmi::CrossLinkRestraintSet
set_linker_smiles(std::string name) (defined in IMP::pmi::CrossLinkRestraintSet)IMP::pmi::CrossLinkRestraintSet
set_linker_smiles_canonical(std::string name) (defined in IMP::pmi::CrossLinkRestraintSet)IMP::pmi::CrossLinkRestraintSet
set_log_level(LogLevel l)IMP::Object
set_maximum_score(double s) (defined in IMP::Restraint)IMP::Restraint
set_metadata(std::string filename, double length, double slope) (defined in IMP::pmi::CrossLinkRestraintSet)IMP::pmi::CrossLinkRestraintSet
set_name(std::string name) (defined in IMP::Object)IMP::Object
set_restraints(const Restraints &ps) (defined in IMP::RestraintSet)IMP::RestraintSet
set_restraints_order(const Restraints &objs) (defined in IMP::RestraintSet)IMP::RestraintSet
set_was_used(bool tf) const IMP::Object
set_weight(Float weight) (defined in IMP::Restraint)IMP::Restraint
show(std::ostream &out=std::cout) const (defined in IMP::Object)IMP::Object
unprotected_evaluate(DerivativeAccumulator *da) const overrideIMP::RestraintSetvirtual
unprotected_evaluate_if_below(DerivativeAccumulator *da, double max) const IMP::Restraintvirtual
unprotected_evaluate_if_good(DerivativeAccumulator *da, double max) const IMP::Restraintvirtual
unprotected_evaluate_moved(DerivativeAccumulator *da, const ParticleIndexes &moved_pis, const ParticleIndexes &reset_pis) const IMP::Restraintvirtual
unprotected_evaluate_moved_if_below(DerivativeAccumulator *da, const ParticleIndexes &moved_pis, const ParticleIndexes &reset_pis, double max) const (defined in IMP::Restraint)IMP::Restraintvirtual
unprotected_evaluate_moved_if_good(DerivativeAccumulator *da, const ParticleIndexes &moved_pis, const ParticleIndexes &reset_pis, double max) const (defined in IMP::Restraint)IMP::Restraintvirtual
~CrossLinkRestraintSet() (defined in IMP::pmi::CrossLinkRestraintSet)IMP::pmi::CrossLinkRestraintSetvirtual
~ModelObject() (defined in IMP::ModelObject)IMP::ModelObject
~Object() (defined in IMP::Object)IMP::Objectvirtual
~RestraintSet() (defined in IMP::RestraintSet)IMP::RestraintSetvirtual