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IMP Reference Guide
2.20.0
The Integrative Modeling Platform
IMP Manual
Reference Guide
Tutorial Index
Modules
Classes
Examples
Class List
Class Index
Class Hierarchy
Class Members
IMP
atom
CHARMMTopology
IMP::atom::CHARMMTopology Member List
This is the complete list of members for
IMP::atom::CHARMMTopology
, including all inherited members.
add_atom_types
(Hierarchy hierarchy) const
IMP::atom::CHARMMTopology
add_bonds
(Hierarchy hierarchy) const
IMP::atom::CHARMMTopology
add_charges
(Hierarchy hierarchy) const
IMP::atom::CHARMMTopology
add_coordinates
(Hierarchy hierarchy) const
IMP::atom::CHARMMTopology
add_dihedrals
(Hierarchy hierarchy) const
IMP::atom::CHARMMTopology
add_impropers
(Hierarchy hierarchy) const
IMP::atom::CHARMMTopology
add_missing_atoms
(Hierarchy hierarchy) const
IMP::atom::CHARMMTopology
add_segment
(CHARMMSegmentTopology *obj) (defined in
IMP::atom::CHARMMTopology
)
IMP::atom::CHARMMTopology
add_segments
(const CHARMMSegmentTopologies &objs) (defined in
IMP::atom::CHARMMTopology
)
IMP::atom::CHARMMTopology
add_sequence
(std::string sequence)
IMP::atom::CHARMMTopology
apply_default_patches
()
IMP::atom::CHARMMTopology
CHARMMTopology
(const CHARMMParameters *force_field, std::string name="CHARMM topology %1%") (defined in
IMP::atom::CHARMMTopology
)
IMP::atom::CHARMMTopology
clear_caches
()
IMP::Object
virtual
clear_segments
() (defined in
IMP::atom::CHARMMTopology
)
IMP::atom::CHARMMTopology
create_hierarchy
(Model *model) const
IMP::atom::CHARMMTopology
do_destroy
()
IMP::Object
protected
virtual
erase_segment
(unsigned int i) (defined in
IMP::atom::CHARMMTopology
)
IMP::atom::CHARMMTopology
get_check_level
() const (defined in
IMP::Object
)
IMP::Object
get_has_segments
() (defined in
IMP::atom::CHARMMTopology
)
IMP::atom::CHARMMTopology
get_log_level
() const (defined in
IMP::Object
)
IMP::Object
get_name
() const (defined in
IMP::Object
)
IMP::Object
get_number_of_segments
() const (defined in
IMP::atom::CHARMMTopology
)
IMP::atom::CHARMMTopology
get_parameters
() (defined in
IMP::atom::CHARMMTopology
)
IMP::atom::CHARMMTopology
get_segment
(unsigned int i) const (defined in
IMP::atom::CHARMMTopology
)
IMP::atom::CHARMMTopology
get_segments
() const (defined in
IMP::atom::CHARMMTopology
)
IMP::atom::CHARMMTopology
get_type_name
() const override (defined in
IMP::atom::CHARMMTopology
)
IMP::atom::CHARMMTopology
virtual
get_version_info
() const override
IMP::atom::CHARMMTopology
virtual
NonCopyable
() (defined in
IMP::NonCopyable
)
IMP::NonCopyable
protected
Object
(std::string name)
IMP::Object
protected
remove_segment
(CHARMMSegmentTopology *d) (defined in
IMP::atom::CHARMMTopology
)
IMP::atom::CHARMMTopology
remove_segments
(const CHARMMSegmentTopologies &d) (defined in
IMP::atom::CHARMMTopology
)
IMP::atom::CHARMMTopology
reserve_segments
(unsigned int sz) (defined in
IMP::atom::CHARMMTopology
)
IMP::atom::CHARMMTopology
ResMap
typedef (defined in
IMP::atom::CHARMMTopology
)
IMP::atom::CHARMMTopology
segments
IMP::atom::CHARMMTopology
set_check_level
(CheckLevel l)
IMP::Object
set_log_level
(LogLevel l)
IMP::Object
set_name
(std::string name) (defined in
IMP::Object
)
IMP::Object
set_segments
(const CHARMMSegmentTopologies &ps) (defined in
IMP::atom::CHARMMTopology
)
IMP::atom::CHARMMTopology
set_segments_order
(const CHARMMSegmentTopologies &objs) (defined in
IMP::atom::CHARMMTopology
)
IMP::atom::CHARMMTopology
set_was_used
(bool tf) const
IMP::Object
setup_hierarchy
(Hierarchy hierarchy) const
IMP::atom::CHARMMTopology
show
(std::ostream &out=std::cout) const (defined in
IMP::Object
)
IMP::Object
~CHARMMTopology
() (defined in
IMP::atom::CHARMMTopology
)
IMP::atom::CHARMMTopology
virtual
~Object
() (defined in
IMP::Object
)
IMP::Object
virtual