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IMP
2.2.1
The Integrative Modeling Platform
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IMP
2.2.1
The Integrative Modeling Platform
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A decorator for a particle that is part of a rigid body but not rigid. More...
#include <IMP/core/rigid_bodies.h>
Inheritance diagram for IMP::core::NonRigidMember:Public Member Functions | |
| NonRigidMember (::IMP::kernel::Model *m,::IMP::kernel::ParticleIndex id) | |
| NonRigidMember (const IMP::kernel::ParticleAdaptor &d) | |
| void | show (std::ostream &out=std::cout) const |
| Public Member Functions inherited from IMP::core::RigidBodyMember | |
| RigidBodyMember (::IMP::kernel::Model *m,::IMP::kernel::ParticleIndex id) | |
| RigidBodyMember (const IMP::kernel::ParticleAdaptor &d) | |
| const algebra::Vector3D & | get_internal_coordinates () const |
| Return the internal (local) coordinates of this member. More... | |
| algebra::Transformation3D | get_internal_transformation () const |
| RigidBody | get_rigid_body () const |
| void | set_coordinates (const algebra::Vector3D ¢er) |
| sets the global coordinates of this member using XYZ::set_coordiantes() | |
| void | set_internal_coordinates (const algebra::Vector3D &v) const |
| set the internal (local) coordinates for this member | |
| void | set_internal_transformation (const algebra::Transformation3D &v) |
| void | show (std::ostream &out=std::cout) const |
| Public Member Functions inherited from IMP::core::XYZ | |
| XYZ (::IMP::kernel::Model *m,::IMP::kernel::ParticleIndex id) | |
| XYZ (const IMP::kernel::ParticleAdaptor &d) | |
| void | add_to_derivative (int i, Float v, DerivativeAccumulator &d) |
| Add something to the derivative of the ith coordinate. | |
| void | add_to_derivatives (const algebra::Vector3D &v, DerivativeAccumulator &d) |
| Add something to the derivative of the coordinates. | |
| Float | get_coordinate (int i) const |
| Get the ith coordinate. | |
| const algebra::Vector3D & | get_coordinates () const |
| Convert it to a vector. More... | |
| bool | get_coordinates_are_optimized () const |
| Get whether the coordinates are optimized. More... | |
| Float | get_derivative (int i) const |
| Get the ith coordinate derivative. | |
| algebra::Vector3D | get_derivatives () const |
| Get the vector of derivatives. More... | |
| algebra::Vector3D | get_vector_to (const XYZ &b) const |
| Get the vector from this particle to another. | |
| Float | get_x () const |
| Float | get_y () const |
| Float | get_z () const |
| void | set_coordinate (unsigned int i, Float v) |
| set the ith coordinate | |
| void | set_coordinates (const algebra::Vector3D &v) |
| set all coordinates from a vector | |
| void | set_coordinates_are_optimized (bool tf) const |
| Set whether the coordinates are optimized. | |
| void | set_x (Float t) |
| void | set_y (Float t) |
| void | set_z (Float t) |
| void | show (std::ostream &out=std::cout) const |
| Public Member Functions inherited from IMP::kernel::Decorator | |
| Model * | get_model () const |
| Returns the Model containing the particle. | |
| Particle * | get_particle () const |
| ParticleIndex | get_particle_index () const |
| operator Particle * () const | |
| operator ParticleIndex () const | |
| Particle * | operator-> () const |
Static Public Member Functions | |
| static NonRigidMember | decorate_particle (::IMP::kernel::Particle *p) |
| static bool | get_is_setup (const IMP::kernel::ParticleAdaptor &p) |
| static bool | get_is_setup (kernel::Model *m, kernel::ParticleIndex p) |
| return true if it is a rigid member | |
| Static Public Member Functions inherited from IMP::core::RigidBodyMember | |
| static RigidBodyMember | decorate_particle (::IMP::kernel::Particle *p) |
| static FloatKeys | get_internal_coordinate_keys () |
| static bool | get_is_setup (const IMP::kernel::ParticleAdaptor &p) |
| static bool | get_is_setup (kernel::Model *m, kernel::ParticleIndexAdaptor p) |
| return true if it is a rigid member | |
| Static Public Member Functions inherited from IMP::core::XYZ | |
| static XYZ | decorate_particle (::IMP::kernel::Particle *p) |
| static FloatKey | get_coordinate_key (unsigned int i) |
| static bool | get_is_setup (const IMP::kernel::ParticleAdaptor &p) |
| static bool | get_is_setup (kernel::Model *m, kernel::ParticleIndex pi) |
| static const FloatKeys & | get_xyz_keys () |
| Get a vector containing the keys for x,y,z. More... | |
| static XYZ | setup_particle (IMP::kernel::ParticleAdaptor decorator) |
| static XYZ | setup_particle (kernel::Model *m, ParticleIndex pi) |
| static XYZ | setup_particle (IMP::kernel::ParticleAdaptor decorator, algebra::Vector3D v) |
| static XYZ | setup_particle (kernel::Model *m, ParticleIndex pi, algebra::Vector3D v) |
Additional Inherited Members | |
| Protected Member Functions inherited from IMP::kernel::Decorator | |
| Decorator (Model *m, ParticleIndex pi) | |
| Decorator (ParticleAdaptor p) | |
NonRigidMembers, like RigidMembers have internal coordinates and move along with the rigid body. However, it is expected that their internal coordinates will change, and so they are not part of structures that assume rigidity.
Definition at line 458 of file rigid_bodies.h.
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Definition at line 460 of file rigid_bodies.h.