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IMP Reference Guide  2.19.0
The Integrative Modeling Platform
IMP::kinematics::FibrilSampler Class Reference

Simultaneous sampling of diheral angles and fibril symmetry operations. More...

#include <IMP/kinematics/FibrilSampler.h>

+ Inheritance diagram for IMP::kinematics::FibrilSampler:

Detailed Description

Simultaneous sampling of diheral angles and fibril symmetry operations.

Definition at line 25 of file FibrilSampler.h.

Public Member Functions

 FibrilSampler (TransformationJoints trans_joint, DihedralAngleRevoluteJoints dihedral_joints, DOFs dofs)
 
virtual void apply (const DOFValues &values) override
 
virtual void apply_floats (const Floats &values)
 
DihedralAngleRevoluteJoints get_dihedral_joints ()
 
TransformationJoints get_transformation_joint ()
 
- Public Member Functions inherited from IMP::kinematics::DOFsSampler
 DOFsSampler (DOFs dofs)
 Constructs the dofs sampler over specified dofs. More...
 
void apply_last_sample ()
 
DOF const * get_dof (unsigned int i) const
 Returns the i'th dof over which this sampler works. More...
 
DOFs const & get_dofs () const
 Returns the dofs over which this sampler works. More...
 
unsigned int get_number_of_dofs () const
 
DOFValues get_sample () const
 
virtual std::string get_type_name () const override
 
virtual ::IMP::VersionInfo get_version_info () const override
 Get information about the module and version of the object. More...
 
void sample_and_apply ()
 
- Public Member Functions inherited from IMP::Object
virtual void clear_caches ()
 
CheckLevel get_check_level () const
 
LogLevel get_log_level () const
 
void set_check_level (CheckLevel l)
 
void set_log_level (LogLevel l)
 Set the logging level used in this object. More...
 
void set_was_used (bool tf) const
 
void show (std::ostream &out=std::cout) const
 
const std::string & get_name () const
 
void set_name (std::string name)
 

Protected Member Functions

virtual DOFValues do_get_sample () const override
 
- Protected Member Functions inherited from IMP::Object
 Object (std::string name)
 Construct an object with the given name. More...
 
virtual void do_destroy ()
 

Constructor & Destructor Documentation

IMP::kinematics::FibrilSampler::FibrilSampler ( TransformationJoints  trans_joint,
DihedralAngleRevoluteJoints  dihedral_joints,
DOFs  dofs 
)

Construct a sampler that samples uniformly a set of backbone (and chi) dihedrals as well as

Parameters
trans_jointA TransformationJoint that contains the XYZ position of the fibril root node as well as the pitch/roll/yaw of the fibril principal vectors wrs: Y-axis
dihedral_jointsthe dihedral joints over which to sample uniformly
dofscorresponding list of dofs for each joint in trans_joint + dihedral_joints respectively, with information about minimal / maximal dof values, etc.

Member Function Documentation

virtual void IMP::kinematics::FibrilSampler::apply ( const DOFValues values)
overridevirtual

apply set of dof values in values over objects associated with this DOFsSampler (e.g., joints)

Implements IMP::kinematics::DOFsSampler.


The documentation for this class was generated from the following file: