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IMP Reference Guide  2.19.0
The Integrative Modeling Platform
GridClosePairsFinder.h
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1 /**
2  * \file IMP/core/GridClosePairsFinder.h
3  * \brief Use a hierarchy of grids to find close pairs.
4  *
5  * Copyright 2007-2022 IMP Inventors. All rights reserved.
6  */
7 
8 #ifndef IMPCORE_GRID_CLOSE_PAIRS_FINDER_H
9 #define IMPCORE_GRID_CLOSE_PAIRS_FINDER_H
10 
11 #include "ClosePairsFinder.h"
12 #include <IMP/object_macros.h>
13 #include <IMP/core/core_config.h>
14 #include <cereal/access.hpp>
15 #include <cereal/types/base_class.hpp>
16 
17 IMPCORE_BEGIN_NAMESPACE
18 
19 //! Find all nearby pairs by testing all pairs
20 /**
21  \see ClosePairsScoreState
22  */
23 class IMPCOREEXPORT GridClosePairsFinder : public ClosePairsFinder {
24  friend class cereal::access;
25  template<class Archive> void serialize(Archive &ar) {
26  ar(cereal::base_class<ClosePairsFinder>(this));
27  }
29  public:
31  virtual IntPairs get_close_pairs(const algebra::BoundingBox3Ds &bbs) const
32  override;
34  const algebra::BoundingBox3Ds &bbs) const
35  override;
37  Model *m, const ParticleIndexes &pc) const override;
39  Model *m, const ParticleIndexes &pca,
40  const ParticleIndexes &pcb) const override;
42  Model *m, const ParticleIndexes &pis) const override;
43 
45 };
46 
47 IMPCORE_END_NAMESPACE
48 
49 #endif /* IMPCORE_GRID_CLOSE_PAIRS_FINDER_H */
Helper macros for implementing IMP Objects.
A base class for algorithms to find spatial proximities.
#define IMP_OBJECT_METHODS(Name)
Define the basic things needed by any Object.
Definition: object_macros.h:25
virtual ParticleIndexPairs get_close_pairs(Model *m, const ParticleIndexes &pc) const =0
return all close pairs among pc in model m
Class for storing model, its restraints, constraints, and particles.
Definition: Model.h:86
#define IMP_OBJECT_SERIALIZE_DECL(Name)
Declare methods needed for serialization of Object pointers.
Definition: object_macros.h:95
virtual ModelObjectsTemp do_get_inputs(Model *m, const ParticleIndexes &pis) const =0
Overload this method to specify the inputs.
Find all nearby pairs by testing all pairs.
A base class for algorithms to detect proximities.