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IMP Reference Guide  2.18.0
The Integrative Modeling Platform
version 2.18.0
example/__init__.py
1 # This file was automatically generated by SWIG (http://www.swig.org).
2 # Version 3.0.7
3 #
4 # Do not make changes to this file unless you know what you are doing--modify
5 # the SWIG interface file instead.
6 
7 
8 # This wrapper is part of IMP,
9 # Copyright 2007-2022 IMP Inventors. All rights reserved.
10 
11 from __future__ import print_function, division, absolute_import
12 
13 
14 
15 
16 
17 from sys import version_info
18 if version_info >= (2, 6, 0):
19  def swig_import_helper():
20  from os.path import dirname
21  import imp
22  fp = None
23  try:
24  fp, pathname, description = imp.find_module('_IMP_example', [dirname(__file__)])
25  except ImportError:
26  import _IMP_example
27  return _IMP_example
28  if fp is not None:
29  try:
30  _mod = imp.load_module('_IMP_example', fp, pathname, description)
31  finally:
32  fp.close()
33  return _mod
34  _IMP_example = swig_import_helper()
35  del swig_import_helper
36 else:
37  import _IMP_example
38 del version_info
39 try:
40  _swig_property = property
41 except NameError:
42  pass # Python < 2.2 doesn't have 'property'.
43 
44 
45 def _swig_setattr_nondynamic(self, class_type, name, value, static=1):
46  if (name == "thisown"):
47  return self.this.own(value)
48  if (name == "this"):
49  if type(value).__name__ == 'SwigPyObject':
50  self.__dict__[name] = value
51  return
52  method = class_type.__swig_setmethods__.get(name, None)
53  if method:
54  return method(self, value)
55  if (not static):
56  object.__setattr__(self, name, value)
57  else:
58  raise AttributeError("You cannot add attributes to %s" % self)
59 
60 
61 def _swig_setattr(self, class_type, name, value):
62  return _swig_setattr_nondynamic(self, class_type, name, value, 0)
63 
64 
65 def _swig_getattr_nondynamic(self, class_type, name, static=1):
66  if (name == "thisown"):
67  return self.this.own()
68  method = class_type.__swig_getmethods__.get(name, None)
69  if method:
70  return method(self)
71  if (not static):
72  return object.__getattr__(self, name)
73  else:
74  raise AttributeError(name)
75 
76 def _swig_getattr(self, class_type, name):
77  return _swig_getattr_nondynamic(self, class_type, name, 0)
78 
79 
80 def _swig_repr(self):
81  try:
82  strthis = "proxy of " + self.this.__repr__()
83  except:
84  strthis = ""
85  return "<%s.%s; %s >" % (self.__class__.__module__, self.__class__.__name__, strthis,)
86 
87 try:
88  _object = object
89  _newclass = 1
90 except AttributeError:
91  class _object:
92  pass
93  _newclass = 0
94 
95 
96 
97 def _swig_setattr_nondynamic_method(set):
98  def set_attr(self, name, value):
99  if (name == "thisown"):
100  return self.this.own(value)
101  if hasattr(self, name) or (name == "this"):
102  set(self, name, value)
103  else:
104  raise AttributeError("You cannot add attributes to %s" % self)
105  return set_attr
106 
107 
108 try:
109  import weakref
110  weakref_proxy = weakref.proxy
111 except:
112  weakref_proxy = lambda x: x
113 
114 
115 class IMP_EXAMPLE_SwigPyIterator(object):
116  """Proxy of C++ swig::IMP_EXAMPLE_SwigPyIterator class"""
117  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
118 
119  def __init__(self, *args, **kwargs):
120  raise AttributeError("No constructor defined - class is abstract")
121  __repr__ = _swig_repr
122  __swig_destroy__ = _IMP_example.delete_IMP_EXAMPLE_SwigPyIterator
123  __del__ = lambda self: None
124 
125  def value(self):
126  """value(IMP_EXAMPLE_SwigPyIterator self) -> PyObject *"""
127  return _IMP_example.IMP_EXAMPLE_SwigPyIterator_value(self)
128 
129 
130  def incr(self, n=1):
131  """
132  incr(IMP_EXAMPLE_SwigPyIterator self, size_t n=1) -> IMP_EXAMPLE_SwigPyIterator
133  incr(IMP_EXAMPLE_SwigPyIterator self) -> IMP_EXAMPLE_SwigPyIterator
134  """
135  return _IMP_example.IMP_EXAMPLE_SwigPyIterator_incr(self, n)
136 
137 
138  def decr(self, n=1):
139  """
140  decr(IMP_EXAMPLE_SwigPyIterator self, size_t n=1) -> IMP_EXAMPLE_SwigPyIterator
141  decr(IMP_EXAMPLE_SwigPyIterator self) -> IMP_EXAMPLE_SwigPyIterator
142  """
143  return _IMP_example.IMP_EXAMPLE_SwigPyIterator_decr(self, n)
144 
145 
146  def distance(self, x):
147  """distance(IMP_EXAMPLE_SwigPyIterator self, IMP_EXAMPLE_SwigPyIterator x) -> ptrdiff_t"""
148  return _IMP_example.IMP_EXAMPLE_SwigPyIterator_distance(self, x)
149 
150 
151  def equal(self, x):
152  """equal(IMP_EXAMPLE_SwigPyIterator self, IMP_EXAMPLE_SwigPyIterator x) -> bool"""
153  return _IMP_example.IMP_EXAMPLE_SwigPyIterator_equal(self, x)
154 
155 
156  def copy(self):
157  """copy(IMP_EXAMPLE_SwigPyIterator self) -> IMP_EXAMPLE_SwigPyIterator"""
158  return _IMP_example.IMP_EXAMPLE_SwigPyIterator_copy(self)
159 
160 
161  def next(self):
162  """next(IMP_EXAMPLE_SwigPyIterator self) -> PyObject *"""
163  return _IMP_example.IMP_EXAMPLE_SwigPyIterator_next(self)
164 
165 
166  def __next__(self):
167  """__next__(IMP_EXAMPLE_SwigPyIterator self) -> PyObject *"""
168  return _IMP_example.IMP_EXAMPLE_SwigPyIterator___next__(self)
169 
170 
171  def previous(self):
172  """previous(IMP_EXAMPLE_SwigPyIterator self) -> PyObject *"""
173  return _IMP_example.IMP_EXAMPLE_SwigPyIterator_previous(self)
174 
175 
176  def advance(self, n):
177  """advance(IMP_EXAMPLE_SwigPyIterator self, ptrdiff_t n) -> IMP_EXAMPLE_SwigPyIterator"""
178  return _IMP_example.IMP_EXAMPLE_SwigPyIterator_advance(self, n)
179 
180 
181  def __eq__(self, x):
182  """__eq__(IMP_EXAMPLE_SwigPyIterator self, IMP_EXAMPLE_SwigPyIterator x) -> bool"""
183  return _IMP_example.IMP_EXAMPLE_SwigPyIterator___eq__(self, x)
184 
185 
186  def __ne__(self, x):
187  """__ne__(IMP_EXAMPLE_SwigPyIterator self, IMP_EXAMPLE_SwigPyIterator x) -> bool"""
188  return _IMP_example.IMP_EXAMPLE_SwigPyIterator___ne__(self, x)
189 
190 
191  def __iadd__(self, n):
192  """__iadd__(IMP_EXAMPLE_SwigPyIterator self, ptrdiff_t n) -> IMP_EXAMPLE_SwigPyIterator"""
193  return _IMP_example.IMP_EXAMPLE_SwigPyIterator___iadd__(self, n)
194 
195 
196  def __isub__(self, n):
197  """__isub__(IMP_EXAMPLE_SwigPyIterator self, ptrdiff_t n) -> IMP_EXAMPLE_SwigPyIterator"""
198  return _IMP_example.IMP_EXAMPLE_SwigPyIterator___isub__(self, n)
199 
200 
201  def __add__(self, n):
202  """__add__(IMP_EXAMPLE_SwigPyIterator self, ptrdiff_t n) -> IMP_EXAMPLE_SwigPyIterator"""
203  return _IMP_example.IMP_EXAMPLE_SwigPyIterator___add__(self, n)
204 
205 
206  def __sub__(self, *args):
207  """
208  __sub__(IMP_EXAMPLE_SwigPyIterator self, ptrdiff_t n) -> IMP_EXAMPLE_SwigPyIterator
209  __sub__(IMP_EXAMPLE_SwigPyIterator self, IMP_EXAMPLE_SwigPyIterator x) -> ptrdiff_t
210  """
211  return _IMP_example.IMP_EXAMPLE_SwigPyIterator___sub__(self, *args)
212 
213  def __iter__(self):
214  return self
215 IMP_EXAMPLE_SwigPyIterator_swigregister = _IMP_example.IMP_EXAMPLE_SwigPyIterator_swigregister
216 IMP_EXAMPLE_SwigPyIterator_swigregister(IMP_EXAMPLE_SwigPyIterator)
217 
218 
219 _value_types=[]
220 _object_types=[]
221 _raii_types=[]
222 _plural_types=[]
223 
224 
225 _IMP_example.IMP_DEBUG_swigconstant(_IMP_example)
226 IMP_DEBUG = _IMP_example.IMP_DEBUG
227 
228 _IMP_example.IMP_RELEASE_swigconstant(_IMP_example)
229 IMP_RELEASE = _IMP_example.IMP_RELEASE
230 
231 _IMP_example.IMP_SILENT_swigconstant(_IMP_example)
232 IMP_SILENT = _IMP_example.IMP_SILENT
233 
234 _IMP_example.IMP_PROGRESS_swigconstant(_IMP_example)
235 IMP_PROGRESS = _IMP_example.IMP_PROGRESS
236 
237 _IMP_example.IMP_TERSE_swigconstant(_IMP_example)
238 IMP_TERSE = _IMP_example.IMP_TERSE
239 
240 _IMP_example.IMP_VERBOSE_swigconstant(_IMP_example)
241 IMP_VERBOSE = _IMP_example.IMP_VERBOSE
242 
243 _IMP_example.IMP_MEMORY_swigconstant(_IMP_example)
244 IMP_MEMORY = _IMP_example.IMP_MEMORY
245 
246 _IMP_example.IMP_NONE_swigconstant(_IMP_example)
247 IMP_NONE = _IMP_example.IMP_NONE
248 
249 _IMP_example.IMP_USAGE_swigconstant(_IMP_example)
250 IMP_USAGE = _IMP_example.IMP_USAGE
251 
252 _IMP_example.IMP_INTERNAL_swigconstant(_IMP_example)
253 IMP_INTERNAL = _IMP_example.IMP_INTERNAL
254 
255 _IMP_example.IMP_KERNEL_HAS_LOG4CXX_swigconstant(_IMP_example)
256 IMP_KERNEL_HAS_LOG4CXX = _IMP_example.IMP_KERNEL_HAS_LOG4CXX
257 
258 _IMP_example.IMP_COMPILER_HAS_DEBUG_VECTOR_swigconstant(_IMP_example)
259 IMP_COMPILER_HAS_DEBUG_VECTOR = _IMP_example.IMP_COMPILER_HAS_DEBUG_VECTOR
260 
261 _IMP_example.IMP_COMPILER_HAS_RANDOM_SHUFFLE_swigconstant(_IMP_example)
262 IMP_COMPILER_HAS_RANDOM_SHUFFLE = _IMP_example.IMP_COMPILER_HAS_RANDOM_SHUFFLE
263 
264 _IMP_example.IMP_COMPILER_HAS_THREE_WAY_swigconstant(_IMP_example)
265 IMP_COMPILER_HAS_THREE_WAY = _IMP_example.IMP_COMPILER_HAS_THREE_WAY
266 
267 _IMP_example.IMP_KERNEL_HAS_BOOST_RANDOM_swigconstant(_IMP_example)
268 IMP_KERNEL_HAS_BOOST_RANDOM = _IMP_example.IMP_KERNEL_HAS_BOOST_RANDOM
269 
270 _IMP_example.IMP_KERNEL_HAS_NUMPY_swigconstant(_IMP_example)
271 IMP_KERNEL_HAS_NUMPY = _IMP_example.IMP_KERNEL_HAS_NUMPY
272 
273 _IMP_example.IMP_KERNEL_HAS_GPERFTOOLS_swigconstant(_IMP_example)
274 IMP_KERNEL_HAS_GPERFTOOLS = _IMP_example.IMP_KERNEL_HAS_GPERFTOOLS
275 
276 _IMP_example.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER_swigconstant(_IMP_example)
277 IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER = _IMP_example.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER
278 
279 _IMP_example.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER_swigconstant(_IMP_example)
280 IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER = _IMP_example.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER
281 
282 _IMP_example.IMPKERNEL_SHOW_WARNINGS_swigconstant(_IMP_example)
283 IMPKERNEL_SHOW_WARNINGS = _IMP_example.IMPKERNEL_SHOW_WARNINGS
284 
285 import sys
286 class _DirectorObjects(object):
287  """@internal Simple class to keep references to director objects
288  to prevent premature deletion."""
289  def __init__(self):
290  self._objects = []
291  def register(self, obj):
292  """Take a reference to a director object; will only work for
293  refcounted C++ classes"""
294  if hasattr(obj, 'get_ref_count'):
295  self._objects.append(obj)
296  def cleanup(self):
297  """Only drop our reference and allow cleanup by Python if no other
298  Python references exist (we hold 3 references: one in self._objects,
299  one in x, and one in the argument list for getrefcount) *and* no
300  other C++ references exist (the Python object always holds one)"""
301  objs = [x for x in self._objects if sys.getrefcount(x) > 3 \
302  or x.get_ref_count() > 1]
303 # Do in two steps so the references are kept until the end of the
304 # function (deleting references may trigger a fresh call to this method)
305  self._objects = objs
306  def get_object_count(self):
307  """Get number of director objects (useful for testing only)"""
308  return len(self._objects)
309 _director_objects = _DirectorObjects()
310 
311 class _ostream(object):
312  """Proxy of C++ std::ostream class"""
313  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
314 
315  def __init__(self, *args, **kwargs):
316  raise AttributeError("No constructor defined")
317  __repr__ = _swig_repr
318 
319  def write(self, osa_buf):
320  """write(_ostream self, char const * osa_buf)"""
321  return _IMP_example._ostream_write(self, osa_buf)
322 
323 _ostream_swigregister = _IMP_example._ostream_swigregister
324 _ostream_swigregister(_ostream)
325 
326 
327 _IMP_example.IMP_HAS_NOEXCEPT_swigconstant(_IMP_example)
328 IMP_HAS_NOEXCEPT = _IMP_example.IMP_HAS_NOEXCEPT
329 
330 _IMP_example.IMP_C_OPEN_BINARY_swigconstant(_IMP_example)
331 IMP_C_OPEN_BINARY = _IMP_example.IMP_C_OPEN_BINARY
332 import IMP
333 
334 _IMP_example.IMP_CGAL_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_example)
335 IMP_CGAL_HAS_BOOST_FILESYSTEM = _IMP_example.IMP_CGAL_HAS_BOOST_FILESYSTEM
336 
337 _IMP_example.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_example)
338 IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS = _IMP_example.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS
339 
340 _IMP_example.IMP_CGAL_HAS_BOOST_RANDOM_swigconstant(_IMP_example)
341 IMP_CGAL_HAS_BOOST_RANDOM = _IMP_example.IMP_CGAL_HAS_BOOST_RANDOM
342 
343 _IMP_example.IMP_CGAL_HAS_BOOST_SERIALIZATION_swigconstant(_IMP_example)
344 IMP_CGAL_HAS_BOOST_SERIALIZATION = _IMP_example.IMP_CGAL_HAS_BOOST_SERIALIZATION
345 
346 _IMP_example.IMP_CGAL_HAS_BOOST_SYSTEM_swigconstant(_IMP_example)
347 IMP_CGAL_HAS_BOOST_SYSTEM = _IMP_example.IMP_CGAL_HAS_BOOST_SYSTEM
348 
349 _IMP_example.IMP_CGAL_HAS_NUMPY_swigconstant(_IMP_example)
350 IMP_CGAL_HAS_NUMPY = _IMP_example.IMP_CGAL_HAS_NUMPY
351 
352 _IMP_example.IMPCGAL_SHOW_WARNINGS_swigconstant(_IMP_example)
353 IMPCGAL_SHOW_WARNINGS = _IMP_example.IMPCGAL_SHOW_WARNINGS
354 import IMP.cgal
355 
356 _IMP_example.IMP_ALGEBRA_HAS_IMP_CGAL_swigconstant(_IMP_example)
357 IMP_ALGEBRA_HAS_IMP_CGAL = _IMP_example.IMP_ALGEBRA_HAS_IMP_CGAL
358 
359 _IMP_example.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_example)
360 IMP_ALGEBRA_HAS_BOOST_FILESYSTEM = _IMP_example.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM
361 
362 _IMP_example.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_example)
363 IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS = _IMP_example.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS
364 
365 _IMP_example.IMP_ALGEBRA_HAS_BOOST_RANDOM_swigconstant(_IMP_example)
366 IMP_ALGEBRA_HAS_BOOST_RANDOM = _IMP_example.IMP_ALGEBRA_HAS_BOOST_RANDOM
367 
368 _IMP_example.IMP_ALGEBRA_HAS_BOOST_SERIALIZATION_swigconstant(_IMP_example)
369 IMP_ALGEBRA_HAS_BOOST_SERIALIZATION = _IMP_example.IMP_ALGEBRA_HAS_BOOST_SERIALIZATION
370 
371 _IMP_example.IMP_ALGEBRA_HAS_BOOST_SYSTEM_swigconstant(_IMP_example)
372 IMP_ALGEBRA_HAS_BOOST_SYSTEM = _IMP_example.IMP_ALGEBRA_HAS_BOOST_SYSTEM
373 
374 _IMP_example.IMP_ALGEBRA_HAS_CGAL_swigconstant(_IMP_example)
375 IMP_ALGEBRA_HAS_CGAL = _IMP_example.IMP_ALGEBRA_HAS_CGAL
376 
377 _IMP_example.IMP_ALGEBRA_HAS_NUMPY_swigconstant(_IMP_example)
378 IMP_ALGEBRA_HAS_NUMPY = _IMP_example.IMP_ALGEBRA_HAS_NUMPY
379 
380 _IMP_example.IMP_ALGEBRA_HAS_ANN_swigconstant(_IMP_example)
381 IMP_ALGEBRA_HAS_ANN = _IMP_example.IMP_ALGEBRA_HAS_ANN
382 
383 _IMP_example.IMPALGEBRA_SHOW_WARNINGS_swigconstant(_IMP_example)
384 IMPALGEBRA_SHOW_WARNINGS = _IMP_example.IMPALGEBRA_SHOW_WARNINGS
385 import IMP.algebra
386 
387 _IMP_example.IMP_DISPLAY_HAS_IMP_CGAL_swigconstant(_IMP_example)
388 IMP_DISPLAY_HAS_IMP_CGAL = _IMP_example.IMP_DISPLAY_HAS_IMP_CGAL
389 
390 _IMP_example.IMP_DISPLAY_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_example)
391 IMP_DISPLAY_HAS_BOOST_FILESYSTEM = _IMP_example.IMP_DISPLAY_HAS_BOOST_FILESYSTEM
392 
393 _IMP_example.IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_example)
394 IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS = _IMP_example.IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS
395 
396 _IMP_example.IMP_DISPLAY_HAS_BOOST_RANDOM_swigconstant(_IMP_example)
397 IMP_DISPLAY_HAS_BOOST_RANDOM = _IMP_example.IMP_DISPLAY_HAS_BOOST_RANDOM
398 
399 _IMP_example.IMP_DISPLAY_HAS_BOOST_SERIALIZATION_swigconstant(_IMP_example)
400 IMP_DISPLAY_HAS_BOOST_SERIALIZATION = _IMP_example.IMP_DISPLAY_HAS_BOOST_SERIALIZATION
401 
402 _IMP_example.IMP_DISPLAY_HAS_BOOST_SYSTEM_swigconstant(_IMP_example)
403 IMP_DISPLAY_HAS_BOOST_SYSTEM = _IMP_example.IMP_DISPLAY_HAS_BOOST_SYSTEM
404 
405 _IMP_example.IMP_DISPLAY_HAS_CGAL_swigconstant(_IMP_example)
406 IMP_DISPLAY_HAS_CGAL = _IMP_example.IMP_DISPLAY_HAS_CGAL
407 
408 _IMP_example.IMP_DISPLAY_HAS_NUMPY_swigconstant(_IMP_example)
409 IMP_DISPLAY_HAS_NUMPY = _IMP_example.IMP_DISPLAY_HAS_NUMPY
410 
411 _IMP_example.IMPDISPLAY_SHOW_WARNINGS_swigconstant(_IMP_example)
412 IMPDISPLAY_SHOW_WARNINGS = _IMP_example.IMPDISPLAY_SHOW_WARNINGS
413 import IMP.display
414 
415 _IMP_example.IMP_SCORE_FUNCTOR_HAS_IMP_CGAL_swigconstant(_IMP_example)
416 IMP_SCORE_FUNCTOR_HAS_IMP_CGAL = _IMP_example.IMP_SCORE_FUNCTOR_HAS_IMP_CGAL
417 
418 _IMP_example.IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_example)
419 IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM = _IMP_example.IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM
420 
421 _IMP_example.IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_example)
422 IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS = _IMP_example.IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS
423 
424 _IMP_example.IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM_swigconstant(_IMP_example)
425 IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM = _IMP_example.IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM
426 
427 _IMP_example.IMP_SCORE_FUNCTOR_HAS_BOOST_SERIALIZATION_swigconstant(_IMP_example)
428 IMP_SCORE_FUNCTOR_HAS_BOOST_SERIALIZATION = _IMP_example.IMP_SCORE_FUNCTOR_HAS_BOOST_SERIALIZATION
429 
430 _IMP_example.IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM_swigconstant(_IMP_example)
431 IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM = _IMP_example.IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM
432 
433 _IMP_example.IMP_SCORE_FUNCTOR_HAS_CGAL_swigconstant(_IMP_example)
434 IMP_SCORE_FUNCTOR_HAS_CGAL = _IMP_example.IMP_SCORE_FUNCTOR_HAS_CGAL
435 
436 _IMP_example.IMP_SCORE_FUNCTOR_HAS_HDF5_swigconstant(_IMP_example)
437 IMP_SCORE_FUNCTOR_HAS_HDF5 = _IMP_example.IMP_SCORE_FUNCTOR_HAS_HDF5
438 
439 _IMP_example.IMP_SCORE_FUNCTOR_HAS_NUMPY_swigconstant(_IMP_example)
440 IMP_SCORE_FUNCTOR_HAS_NUMPY = _IMP_example.IMP_SCORE_FUNCTOR_HAS_NUMPY
441 
442 _IMP_example.IMPSCOREFUNCTOR_SHOW_WARNINGS_swigconstant(_IMP_example)
443 IMPSCOREFUNCTOR_SHOW_WARNINGS = _IMP_example.IMPSCOREFUNCTOR_SHOW_WARNINGS
444 import IMP.score_functor
445 
446 _IMP_example.IMP_STATISTICS_HAS_IMP_CGAL_swigconstant(_IMP_example)
447 IMP_STATISTICS_HAS_IMP_CGAL = _IMP_example.IMP_STATISTICS_HAS_IMP_CGAL
448 
449 _IMP_example.IMP_STATISTICS_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_example)
450 IMP_STATISTICS_HAS_BOOST_FILESYSTEM = _IMP_example.IMP_STATISTICS_HAS_BOOST_FILESYSTEM
451 
452 _IMP_example.IMP_STATISTICS_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_example)
453 IMP_STATISTICS_HAS_BOOST_PROGRAMOPTIONS = _IMP_example.IMP_STATISTICS_HAS_BOOST_PROGRAMOPTIONS
454 
455 _IMP_example.IMP_STATISTICS_HAS_BOOST_RANDOM_swigconstant(_IMP_example)
456 IMP_STATISTICS_HAS_BOOST_RANDOM = _IMP_example.IMP_STATISTICS_HAS_BOOST_RANDOM
457 
458 _IMP_example.IMP_STATISTICS_HAS_BOOST_SERIALIZATION_swigconstant(_IMP_example)
459 IMP_STATISTICS_HAS_BOOST_SERIALIZATION = _IMP_example.IMP_STATISTICS_HAS_BOOST_SERIALIZATION
460 
461 _IMP_example.IMP_STATISTICS_HAS_BOOST_SYSTEM_swigconstant(_IMP_example)
462 IMP_STATISTICS_HAS_BOOST_SYSTEM = _IMP_example.IMP_STATISTICS_HAS_BOOST_SYSTEM
463 
464 _IMP_example.IMP_STATISTICS_HAS_CGAL_swigconstant(_IMP_example)
465 IMP_STATISTICS_HAS_CGAL = _IMP_example.IMP_STATISTICS_HAS_CGAL
466 
467 _IMP_example.IMP_STATISTICS_HAS_NUMPY_swigconstant(_IMP_example)
468 IMP_STATISTICS_HAS_NUMPY = _IMP_example.IMP_STATISTICS_HAS_NUMPY
469 
470 _IMP_example.IMPSTATISTICS_SHOW_WARNINGS_swigconstant(_IMP_example)
471 IMPSTATISTICS_SHOW_WARNINGS = _IMP_example.IMPSTATISTICS_SHOW_WARNINGS
472 import IMP.statistics
473 
474 _IMP_example.IMP_CORE_HAS_IMP_CGAL_swigconstant(_IMP_example)
475 IMP_CORE_HAS_IMP_CGAL = _IMP_example.IMP_CORE_HAS_IMP_CGAL
476 
477 _IMP_example.IMP_CORE_HAS_IMP_KERNEL_swigconstant(_IMP_example)
478 IMP_CORE_HAS_IMP_KERNEL = _IMP_example.IMP_CORE_HAS_IMP_KERNEL
479 
480 _IMP_example.IMP_CORE_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_example)
481 IMP_CORE_HAS_BOOST_FILESYSTEM = _IMP_example.IMP_CORE_HAS_BOOST_FILESYSTEM
482 
483 _IMP_example.IMP_CORE_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_example)
484 IMP_CORE_HAS_BOOST_PROGRAMOPTIONS = _IMP_example.IMP_CORE_HAS_BOOST_PROGRAMOPTIONS
485 
486 _IMP_example.IMP_CORE_HAS_BOOST_RANDOM_swigconstant(_IMP_example)
487 IMP_CORE_HAS_BOOST_RANDOM = _IMP_example.IMP_CORE_HAS_BOOST_RANDOM
488 
489 _IMP_example.IMP_CORE_HAS_BOOST_SERIALIZATION_swigconstant(_IMP_example)
490 IMP_CORE_HAS_BOOST_SERIALIZATION = _IMP_example.IMP_CORE_HAS_BOOST_SERIALIZATION
491 
492 _IMP_example.IMP_CORE_HAS_BOOST_SYSTEM_swigconstant(_IMP_example)
493 IMP_CORE_HAS_BOOST_SYSTEM = _IMP_example.IMP_CORE_HAS_BOOST_SYSTEM
494 
495 _IMP_example.IMP_CORE_HAS_CGAL_swigconstant(_IMP_example)
496 IMP_CORE_HAS_CGAL = _IMP_example.IMP_CORE_HAS_CGAL
497 
498 _IMP_example.IMP_CORE_HAS_HDF5_swigconstant(_IMP_example)
499 IMP_CORE_HAS_HDF5 = _IMP_example.IMP_CORE_HAS_HDF5
500 
501 _IMP_example.IMP_CORE_HAS_NUMPY_swigconstant(_IMP_example)
502 IMP_CORE_HAS_NUMPY = _IMP_example.IMP_CORE_HAS_NUMPY
503 
504 _IMP_example.IMPCORE_SHOW_WARNINGS_swigconstant(_IMP_example)
505 IMPCORE_SHOW_WARNINGS = _IMP_example.IMPCORE_SHOW_WARNINGS
506 import IMP.core
507 
508 _IMP_example.IMP_CONTAINER_HAS_IMP_ALGEBRA_swigconstant(_IMP_example)
509 IMP_CONTAINER_HAS_IMP_ALGEBRA = _IMP_example.IMP_CONTAINER_HAS_IMP_ALGEBRA
510 
511 _IMP_example.IMP_CONTAINER_HAS_IMP_CGAL_swigconstant(_IMP_example)
512 IMP_CONTAINER_HAS_IMP_CGAL = _IMP_example.IMP_CONTAINER_HAS_IMP_CGAL
513 
514 _IMP_example.IMP_CONTAINER_HAS_IMP_DISPLAY_swigconstant(_IMP_example)
515 IMP_CONTAINER_HAS_IMP_DISPLAY = _IMP_example.IMP_CONTAINER_HAS_IMP_DISPLAY
516 
517 _IMP_example.IMP_CONTAINER_HAS_IMP_KERNEL_swigconstant(_IMP_example)
518 IMP_CONTAINER_HAS_IMP_KERNEL = _IMP_example.IMP_CONTAINER_HAS_IMP_KERNEL
519 
520 _IMP_example.IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_example)
521 IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR = _IMP_example.IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR
522 
523 _IMP_example.IMP_CONTAINER_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_example)
524 IMP_CONTAINER_HAS_BOOST_FILESYSTEM = _IMP_example.IMP_CONTAINER_HAS_BOOST_FILESYSTEM
525 
526 _IMP_example.IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_example)
527 IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS = _IMP_example.IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS
528 
529 _IMP_example.IMP_CONTAINER_HAS_BOOST_RANDOM_swigconstant(_IMP_example)
530 IMP_CONTAINER_HAS_BOOST_RANDOM = _IMP_example.IMP_CONTAINER_HAS_BOOST_RANDOM
531 
532 _IMP_example.IMP_CONTAINER_HAS_BOOST_SERIALIZATION_swigconstant(_IMP_example)
533 IMP_CONTAINER_HAS_BOOST_SERIALIZATION = _IMP_example.IMP_CONTAINER_HAS_BOOST_SERIALIZATION
534 
535 _IMP_example.IMP_CONTAINER_HAS_BOOST_SYSTEM_swigconstant(_IMP_example)
536 IMP_CONTAINER_HAS_BOOST_SYSTEM = _IMP_example.IMP_CONTAINER_HAS_BOOST_SYSTEM
537 
538 _IMP_example.IMP_CONTAINER_HAS_CGAL_swigconstant(_IMP_example)
539 IMP_CONTAINER_HAS_CGAL = _IMP_example.IMP_CONTAINER_HAS_CGAL
540 
541 _IMP_example.IMP_CONTAINER_HAS_HDF5_swigconstant(_IMP_example)
542 IMP_CONTAINER_HAS_HDF5 = _IMP_example.IMP_CONTAINER_HAS_HDF5
543 
544 _IMP_example.IMP_CONTAINER_HAS_NUMPY_swigconstant(_IMP_example)
545 IMP_CONTAINER_HAS_NUMPY = _IMP_example.IMP_CONTAINER_HAS_NUMPY
546 
547 _IMP_example.IMP_CONTAINER_HAS_PYTHON_IHM_swigconstant(_IMP_example)
548 IMP_CONTAINER_HAS_PYTHON_IHM = _IMP_example.IMP_CONTAINER_HAS_PYTHON_IHM
549 
550 _IMP_example.IMP_CONTAINER_HAS_GOOGLE_DENSE_HASH_MAP_swigconstant(_IMP_example)
551 IMP_CONTAINER_HAS_GOOGLE_DENSE_HASH_MAP = _IMP_example.IMP_CONTAINER_HAS_GOOGLE_DENSE_HASH_MAP
552 
553 _IMP_example.IMP_CONTAINER_HAS_ROBIN_MAP_swigconstant(_IMP_example)
554 IMP_CONTAINER_HAS_ROBIN_MAP = _IMP_example.IMP_CONTAINER_HAS_ROBIN_MAP
555 
556 _IMP_example.IMPCONTAINER_SHOW_WARNINGS_swigconstant(_IMP_example)
557 IMPCONTAINER_SHOW_WARNINGS = _IMP_example.IMPCONTAINER_SHOW_WARNINGS
558 import IMP.container
559 
560 _IMP_example.IMP_ATOM_HAS_IMP_CGAL_swigconstant(_IMP_example)
561 IMP_ATOM_HAS_IMP_CGAL = _IMP_example.IMP_ATOM_HAS_IMP_CGAL
562 
563 _IMP_example.IMP_ATOM_HAS_IMP_KERNEL_swigconstant(_IMP_example)
564 IMP_ATOM_HAS_IMP_KERNEL = _IMP_example.IMP_ATOM_HAS_IMP_KERNEL
565 
566 _IMP_example.IMP_ATOM_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_example)
567 IMP_ATOM_HAS_IMP_SCORE_FUNCTOR = _IMP_example.IMP_ATOM_HAS_IMP_SCORE_FUNCTOR
568 
569 _IMP_example.IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_example)
570 IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS = _IMP_example.IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS
571 
572 _IMP_example.IMP_ATOM_HAS_BOOST_RANDOM_swigconstant(_IMP_example)
573 IMP_ATOM_HAS_BOOST_RANDOM = _IMP_example.IMP_ATOM_HAS_BOOST_RANDOM
574 
575 _IMP_example.IMP_ATOM_HAS_BOOST_REGEX_swigconstant(_IMP_example)
576 IMP_ATOM_HAS_BOOST_REGEX = _IMP_example.IMP_ATOM_HAS_BOOST_REGEX
577 
578 _IMP_example.IMP_ATOM_HAS_BOOST_SERIALIZATION_swigconstant(_IMP_example)
579 IMP_ATOM_HAS_BOOST_SERIALIZATION = _IMP_example.IMP_ATOM_HAS_BOOST_SERIALIZATION
580 
581 _IMP_example.IMP_ATOM_HAS_BOOST_SYSTEM_swigconstant(_IMP_example)
582 IMP_ATOM_HAS_BOOST_SYSTEM = _IMP_example.IMP_ATOM_HAS_BOOST_SYSTEM
583 
584 _IMP_example.IMP_ATOM_HAS_CGAL_swigconstant(_IMP_example)
585 IMP_ATOM_HAS_CGAL = _IMP_example.IMP_ATOM_HAS_CGAL
586 
587 _IMP_example.IMP_ATOM_HAS_HDF5_swigconstant(_IMP_example)
588 IMP_ATOM_HAS_HDF5 = _IMP_example.IMP_ATOM_HAS_HDF5
589 
590 _IMP_example.IMP_ATOM_HAS_NUMPY_swigconstant(_IMP_example)
591 IMP_ATOM_HAS_NUMPY = _IMP_example.IMP_ATOM_HAS_NUMPY
592 
593 _IMP_example.IMP_ATOM_HAS_PYTHON_IHM_swigconstant(_IMP_example)
594 IMP_ATOM_HAS_PYTHON_IHM = _IMP_example.IMP_ATOM_HAS_PYTHON_IHM
595 
596 _IMP_example.IMPATOM_SHOW_WARNINGS_swigconstant(_IMP_example)
597 IMPATOM_SHOW_WARNINGS = _IMP_example.IMPATOM_SHOW_WARNINGS
598 
599 _IMP_example.IMP_ATOM_TYPE_INDEX_swigconstant(_IMP_example)
600 IMP_ATOM_TYPE_INDEX = _IMP_example.IMP_ATOM_TYPE_INDEX
601 
602 _IMP_example.IMP_RESIDUE_TYPE_INDEX_swigconstant(_IMP_example)
603 IMP_RESIDUE_TYPE_INDEX = _IMP_example.IMP_RESIDUE_TYPE_INDEX
604 
605 _IMP_example.IMP_HIERARCHY_TYPE_INDEX_swigconstant(_IMP_example)
606 IMP_HIERARCHY_TYPE_INDEX = _IMP_example.IMP_HIERARCHY_TYPE_INDEX
607 
608 _IMP_example.IMP_CHAIN_TYPE_INDEX_swigconstant(_IMP_example)
609 IMP_CHAIN_TYPE_INDEX = _IMP_example.IMP_CHAIN_TYPE_INDEX
610 import IMP.atom
611 
612 _IMP_example.IMP_EM_HAS_IMP_CGAL_swigconstant(_IMP_example)
613 IMP_EM_HAS_IMP_CGAL = _IMP_example.IMP_EM_HAS_IMP_CGAL
614 
615 _IMP_example.IMP_EM_HAS_IMP_CONTAINER_swigconstant(_IMP_example)
616 IMP_EM_HAS_IMP_CONTAINER = _IMP_example.IMP_EM_HAS_IMP_CONTAINER
617 
618 _IMP_example.IMP_EM_HAS_IMP_DISPLAY_swigconstant(_IMP_example)
619 IMP_EM_HAS_IMP_DISPLAY = _IMP_example.IMP_EM_HAS_IMP_DISPLAY
620 
621 _IMP_example.IMP_EM_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_example)
622 IMP_EM_HAS_IMP_SCORE_FUNCTOR = _IMP_example.IMP_EM_HAS_IMP_SCORE_FUNCTOR
623 
624 _IMP_example.IMP_EM_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_example)
625 IMP_EM_HAS_BOOST_FILESYSTEM = _IMP_example.IMP_EM_HAS_BOOST_FILESYSTEM
626 
627 _IMP_example.IMP_EM_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_example)
628 IMP_EM_HAS_BOOST_PROGRAMOPTIONS = _IMP_example.IMP_EM_HAS_BOOST_PROGRAMOPTIONS
629 
630 _IMP_example.IMP_EM_HAS_BOOST_RANDOM_swigconstant(_IMP_example)
631 IMP_EM_HAS_BOOST_RANDOM = _IMP_example.IMP_EM_HAS_BOOST_RANDOM
632 
633 _IMP_example.IMP_EM_HAS_BOOST_REGEX_swigconstant(_IMP_example)
634 IMP_EM_HAS_BOOST_REGEX = _IMP_example.IMP_EM_HAS_BOOST_REGEX
635 
636 _IMP_example.IMP_EM_HAS_BOOST_SERIALIZATION_swigconstant(_IMP_example)
637 IMP_EM_HAS_BOOST_SERIALIZATION = _IMP_example.IMP_EM_HAS_BOOST_SERIALIZATION
638 
639 _IMP_example.IMP_EM_HAS_BOOST_SYSTEM_swigconstant(_IMP_example)
640 IMP_EM_HAS_BOOST_SYSTEM = _IMP_example.IMP_EM_HAS_BOOST_SYSTEM
641 
642 _IMP_example.IMP_EM_HAS_CGAL_swigconstant(_IMP_example)
643 IMP_EM_HAS_CGAL = _IMP_example.IMP_EM_HAS_CGAL
644 
645 _IMP_example.IMP_EM_HAS_HDF5_swigconstant(_IMP_example)
646 IMP_EM_HAS_HDF5 = _IMP_example.IMP_EM_HAS_HDF5
647 
648 _IMP_example.IMP_EM_HAS_NUMPY_swigconstant(_IMP_example)
649 IMP_EM_HAS_NUMPY = _IMP_example.IMP_EM_HAS_NUMPY
650 
651 _IMP_example.IMP_EM_HAS_PYTHON_IHM_swigconstant(_IMP_example)
652 IMP_EM_HAS_PYTHON_IHM = _IMP_example.IMP_EM_HAS_PYTHON_IHM
653 
654 _IMP_example.IMPEM_SHOW_WARNINGS_swigconstant(_IMP_example)
655 IMPEM_SHOW_WARNINGS = _IMP_example.IMPEM_SHOW_WARNINGS
656 import IMP.em
657 
658 _IMP_example.IMP_SAXS_HAS_IMP_CGAL_swigconstant(_IMP_example)
659 IMP_SAXS_HAS_IMP_CGAL = _IMP_example.IMP_SAXS_HAS_IMP_CGAL
660 
661 _IMP_example.IMP_SAXS_HAS_IMP_CONTAINER_swigconstant(_IMP_example)
662 IMP_SAXS_HAS_IMP_CONTAINER = _IMP_example.IMP_SAXS_HAS_IMP_CONTAINER
663 
664 _IMP_example.IMP_SAXS_HAS_IMP_DISPLAY_swigconstant(_IMP_example)
665 IMP_SAXS_HAS_IMP_DISPLAY = _IMP_example.IMP_SAXS_HAS_IMP_DISPLAY
666 
667 _IMP_example.IMP_SAXS_HAS_IMP_KERNEL_swigconstant(_IMP_example)
668 IMP_SAXS_HAS_IMP_KERNEL = _IMP_example.IMP_SAXS_HAS_IMP_KERNEL
669 
670 _IMP_example.IMP_SAXS_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_example)
671 IMP_SAXS_HAS_IMP_SCORE_FUNCTOR = _IMP_example.IMP_SAXS_HAS_IMP_SCORE_FUNCTOR
672 
673 _IMP_example.IMP_SAXS_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_example)
674 IMP_SAXS_HAS_BOOST_FILESYSTEM = _IMP_example.IMP_SAXS_HAS_BOOST_FILESYSTEM
675 
676 _IMP_example.IMP_SAXS_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_example)
677 IMP_SAXS_HAS_BOOST_PROGRAMOPTIONS = _IMP_example.IMP_SAXS_HAS_BOOST_PROGRAMOPTIONS
678 
679 _IMP_example.IMP_SAXS_HAS_BOOST_RANDOM_swigconstant(_IMP_example)
680 IMP_SAXS_HAS_BOOST_RANDOM = _IMP_example.IMP_SAXS_HAS_BOOST_RANDOM
681 
682 _IMP_example.IMP_SAXS_HAS_BOOST_REGEX_swigconstant(_IMP_example)
683 IMP_SAXS_HAS_BOOST_REGEX = _IMP_example.IMP_SAXS_HAS_BOOST_REGEX
684 
685 _IMP_example.IMP_SAXS_HAS_BOOST_SERIALIZATION_swigconstant(_IMP_example)
686 IMP_SAXS_HAS_BOOST_SERIALIZATION = _IMP_example.IMP_SAXS_HAS_BOOST_SERIALIZATION
687 
688 _IMP_example.IMP_SAXS_HAS_BOOST_SYSTEM_swigconstant(_IMP_example)
689 IMP_SAXS_HAS_BOOST_SYSTEM = _IMP_example.IMP_SAXS_HAS_BOOST_SYSTEM
690 
691 _IMP_example.IMP_SAXS_HAS_CGAL_swigconstant(_IMP_example)
692 IMP_SAXS_HAS_CGAL = _IMP_example.IMP_SAXS_HAS_CGAL
693 
694 _IMP_example.IMP_SAXS_HAS_HDF5_swigconstant(_IMP_example)
695 IMP_SAXS_HAS_HDF5 = _IMP_example.IMP_SAXS_HAS_HDF5
696 
697 _IMP_example.IMP_SAXS_HAS_NUMPY_swigconstant(_IMP_example)
698 IMP_SAXS_HAS_NUMPY = _IMP_example.IMP_SAXS_HAS_NUMPY
699 
700 _IMP_example.IMP_SAXS_HAS_PYTHON_IHM_swigconstant(_IMP_example)
701 IMP_SAXS_HAS_PYTHON_IHM = _IMP_example.IMP_SAXS_HAS_PYTHON_IHM
702 
703 _IMP_example.IMPSAXS_SHOW_WARNINGS_swigconstant(_IMP_example)
704 IMPSAXS_SHOW_WARNINGS = _IMP_example.IMPSAXS_SHOW_WARNINGS
705 import IMP.saxs
706 
707 _IMP_example.IMP_ISD_HAS_IMP_CGAL_swigconstant(_IMP_example)
708 IMP_ISD_HAS_IMP_CGAL = _IMP_example.IMP_ISD_HAS_IMP_CGAL
709 
710 _IMP_example.IMP_ISD_HAS_IMP_DISPLAY_swigconstant(_IMP_example)
711 IMP_ISD_HAS_IMP_DISPLAY = _IMP_example.IMP_ISD_HAS_IMP_DISPLAY
712 
713 _IMP_example.IMP_ISD_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_example)
714 IMP_ISD_HAS_IMP_SCORE_FUNCTOR = _IMP_example.IMP_ISD_HAS_IMP_SCORE_FUNCTOR
715 
716 _IMP_example.IMP_ISD_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_example)
717 IMP_ISD_HAS_BOOST_FILESYSTEM = _IMP_example.IMP_ISD_HAS_BOOST_FILESYSTEM
718 
719 _IMP_example.IMP_ISD_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_example)
720 IMP_ISD_HAS_BOOST_PROGRAMOPTIONS = _IMP_example.IMP_ISD_HAS_BOOST_PROGRAMOPTIONS
721 
722 _IMP_example.IMP_ISD_HAS_BOOST_RANDOM_swigconstant(_IMP_example)
723 IMP_ISD_HAS_BOOST_RANDOM = _IMP_example.IMP_ISD_HAS_BOOST_RANDOM
724 
725 _IMP_example.IMP_ISD_HAS_BOOST_REGEX_swigconstant(_IMP_example)
726 IMP_ISD_HAS_BOOST_REGEX = _IMP_example.IMP_ISD_HAS_BOOST_REGEX
727 
728 _IMP_example.IMP_ISD_HAS_BOOST_SERIALIZATION_swigconstant(_IMP_example)
729 IMP_ISD_HAS_BOOST_SERIALIZATION = _IMP_example.IMP_ISD_HAS_BOOST_SERIALIZATION
730 
731 _IMP_example.IMP_ISD_HAS_BOOST_SYSTEM_swigconstant(_IMP_example)
732 IMP_ISD_HAS_BOOST_SYSTEM = _IMP_example.IMP_ISD_HAS_BOOST_SYSTEM
733 
734 _IMP_example.IMP_ISD_HAS_CGAL_swigconstant(_IMP_example)
735 IMP_ISD_HAS_CGAL = _IMP_example.IMP_ISD_HAS_CGAL
736 
737 _IMP_example.IMP_ISD_HAS_HDF5_swigconstant(_IMP_example)
738 IMP_ISD_HAS_HDF5 = _IMP_example.IMP_ISD_HAS_HDF5
739 
740 _IMP_example.IMP_ISD_HAS_NUMPY_swigconstant(_IMP_example)
741 IMP_ISD_HAS_NUMPY = _IMP_example.IMP_ISD_HAS_NUMPY
742 
743 _IMP_example.IMP_ISD_HAS_PYTHON_IHM_swigconstant(_IMP_example)
744 IMP_ISD_HAS_PYTHON_IHM = _IMP_example.IMP_ISD_HAS_PYTHON_IHM
745 
746 _IMP_example.IMPISD_SHOW_WARNINGS_swigconstant(_IMP_example)
747 IMPISD_SHOW_WARNINGS = _IMP_example.IMPISD_SHOW_WARNINGS
748 import IMP.isd
749 
750 _IMP_example.IMP_RMF_HAS_IMP_CGAL_swigconstant(_IMP_example)
751 IMP_RMF_HAS_IMP_CGAL = _IMP_example.IMP_RMF_HAS_IMP_CGAL
752 
753 _IMP_example.IMP_RMF_HAS_IMP_EM_swigconstant(_IMP_example)
754 IMP_RMF_HAS_IMP_EM = _IMP_example.IMP_RMF_HAS_IMP_EM
755 
756 _IMP_example.IMP_RMF_HAS_IMP_SAXS_swigconstant(_IMP_example)
757 IMP_RMF_HAS_IMP_SAXS = _IMP_example.IMP_RMF_HAS_IMP_SAXS
758 
759 _IMP_example.IMP_RMF_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_example)
760 IMP_RMF_HAS_IMP_SCORE_FUNCTOR = _IMP_example.IMP_RMF_HAS_IMP_SCORE_FUNCTOR
761 
762 _IMP_example.IMP_RMF_HAS_IMP_STATISTICS_swigconstant(_IMP_example)
763 IMP_RMF_HAS_IMP_STATISTICS = _IMP_example.IMP_RMF_HAS_IMP_STATISTICS
764 
765 _IMP_example.IMP_RMF_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_example)
766 IMP_RMF_HAS_BOOST_FILESYSTEM = _IMP_example.IMP_RMF_HAS_BOOST_FILESYSTEM
767 
768 _IMP_example.IMP_RMF_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_example)
769 IMP_RMF_HAS_BOOST_PROGRAMOPTIONS = _IMP_example.IMP_RMF_HAS_BOOST_PROGRAMOPTIONS
770 
771 _IMP_example.IMP_RMF_HAS_BOOST_RANDOM_swigconstant(_IMP_example)
772 IMP_RMF_HAS_BOOST_RANDOM = _IMP_example.IMP_RMF_HAS_BOOST_RANDOM
773 
774 _IMP_example.IMP_RMF_HAS_BOOST_REGEX_swigconstant(_IMP_example)
775 IMP_RMF_HAS_BOOST_REGEX = _IMP_example.IMP_RMF_HAS_BOOST_REGEX
776 
777 _IMP_example.IMP_RMF_HAS_BOOST_SERIALIZATION_swigconstant(_IMP_example)
778 IMP_RMF_HAS_BOOST_SERIALIZATION = _IMP_example.IMP_RMF_HAS_BOOST_SERIALIZATION
779 
780 _IMP_example.IMP_RMF_HAS_BOOST_SYSTEM_swigconstant(_IMP_example)
781 IMP_RMF_HAS_BOOST_SYSTEM = _IMP_example.IMP_RMF_HAS_BOOST_SYSTEM
782 
783 _IMP_example.IMP_RMF_HAS_CGAL_swigconstant(_IMP_example)
784 IMP_RMF_HAS_CGAL = _IMP_example.IMP_RMF_HAS_CGAL
785 
786 _IMP_example.IMP_RMF_HAS_HDF5_swigconstant(_IMP_example)
787 IMP_RMF_HAS_HDF5 = _IMP_example.IMP_RMF_HAS_HDF5
788 
789 _IMP_example.IMP_RMF_HAS_NUMPY_swigconstant(_IMP_example)
790 IMP_RMF_HAS_NUMPY = _IMP_example.IMP_RMF_HAS_NUMPY
791 
792 _IMP_example.IMP_RMF_HAS_PYTHON_IHM_swigconstant(_IMP_example)
793 IMP_RMF_HAS_PYTHON_IHM = _IMP_example.IMP_RMF_HAS_PYTHON_IHM
794 
795 _IMP_example.IMPRMF_SHOW_WARNINGS_swigconstant(_IMP_example)
796 IMPRMF_SHOW_WARNINGS = _IMP_example.IMPRMF_SHOW_WARNINGS
797 import IMP.rmf
798 import RMF
799 
800 _IMP_example.IMP_DOMINO_HAS_IMP_ATOM_swigconstant(_IMP_example)
801 IMP_DOMINO_HAS_IMP_ATOM = _IMP_example.IMP_DOMINO_HAS_IMP_ATOM
802 
803 _IMP_example.IMP_DOMINO_HAS_IMP_CGAL_swigconstant(_IMP_example)
804 IMP_DOMINO_HAS_IMP_CGAL = _IMP_example.IMP_DOMINO_HAS_IMP_CGAL
805 
806 _IMP_example.IMP_DOMINO_HAS_IMP_EM_swigconstant(_IMP_example)
807 IMP_DOMINO_HAS_IMP_EM = _IMP_example.IMP_DOMINO_HAS_IMP_EM
808 
809 _IMP_example.IMP_DOMINO_HAS_IMP_ISD_swigconstant(_IMP_example)
810 IMP_DOMINO_HAS_IMP_ISD = _IMP_example.IMP_DOMINO_HAS_IMP_ISD
811 
812 _IMP_example.IMP_DOMINO_HAS_IMP_KERNEL_swigconstant(_IMP_example)
813 IMP_DOMINO_HAS_IMP_KERNEL = _IMP_example.IMP_DOMINO_HAS_IMP_KERNEL
814 
815 _IMP_example.IMP_DOMINO_HAS_IMP_RMF_swigconstant(_IMP_example)
816 IMP_DOMINO_HAS_IMP_RMF = _IMP_example.IMP_DOMINO_HAS_IMP_RMF
817 
818 _IMP_example.IMP_DOMINO_HAS_IMP_SAXS_swigconstant(_IMP_example)
819 IMP_DOMINO_HAS_IMP_SAXS = _IMP_example.IMP_DOMINO_HAS_IMP_SAXS
820 
821 _IMP_example.IMP_DOMINO_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_example)
822 IMP_DOMINO_HAS_IMP_SCORE_FUNCTOR = _IMP_example.IMP_DOMINO_HAS_IMP_SCORE_FUNCTOR
823 
824 _IMP_example.IMP_DOMINO_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_example)
825 IMP_DOMINO_HAS_BOOST_FILESYSTEM = _IMP_example.IMP_DOMINO_HAS_BOOST_FILESYSTEM
826 
827 _IMP_example.IMP_DOMINO_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_example)
828 IMP_DOMINO_HAS_BOOST_PROGRAMOPTIONS = _IMP_example.IMP_DOMINO_HAS_BOOST_PROGRAMOPTIONS
829 
830 _IMP_example.IMP_DOMINO_HAS_BOOST_RANDOM_swigconstant(_IMP_example)
831 IMP_DOMINO_HAS_BOOST_RANDOM = _IMP_example.IMP_DOMINO_HAS_BOOST_RANDOM
832 
833 _IMP_example.IMP_DOMINO_HAS_BOOST_REGEX_swigconstant(_IMP_example)
834 IMP_DOMINO_HAS_BOOST_REGEX = _IMP_example.IMP_DOMINO_HAS_BOOST_REGEX
835 
836 _IMP_example.IMP_DOMINO_HAS_BOOST_SERIALIZATION_swigconstant(_IMP_example)
837 IMP_DOMINO_HAS_BOOST_SERIALIZATION = _IMP_example.IMP_DOMINO_HAS_BOOST_SERIALIZATION
838 
839 _IMP_example.IMP_DOMINO_HAS_BOOST_SYSTEM_swigconstant(_IMP_example)
840 IMP_DOMINO_HAS_BOOST_SYSTEM = _IMP_example.IMP_DOMINO_HAS_BOOST_SYSTEM
841 
842 _IMP_example.IMP_DOMINO_HAS_CGAL_swigconstant(_IMP_example)
843 IMP_DOMINO_HAS_CGAL = _IMP_example.IMP_DOMINO_HAS_CGAL
844 
845 _IMP_example.IMP_DOMINO_HAS_HDF5_swigconstant(_IMP_example)
846 IMP_DOMINO_HAS_HDF5 = _IMP_example.IMP_DOMINO_HAS_HDF5
847 
848 _IMP_example.IMP_DOMINO_HAS_NUMPY_swigconstant(_IMP_example)
849 IMP_DOMINO_HAS_NUMPY = _IMP_example.IMP_DOMINO_HAS_NUMPY
850 
851 _IMP_example.IMP_DOMINO_HAS_RMF_swigconstant(_IMP_example)
852 IMP_DOMINO_HAS_RMF = _IMP_example.IMP_DOMINO_HAS_RMF
853 
854 _IMP_example.IMP_DOMINO_HAS_PYTHON_IHM_swigconstant(_IMP_example)
855 IMP_DOMINO_HAS_PYTHON_IHM = _IMP_example.IMP_DOMINO_HAS_PYTHON_IHM
856 
857 _IMP_example.IMPDOMINO_SHOW_WARNINGS_swigconstant(_IMP_example)
858 IMPDOMINO_SHOW_WARNINGS = _IMP_example.IMPDOMINO_SHOW_WARNINGS
859 import RMF_HDF5
860 import IMP.domino
861 
862 _IMP_example.IMP_EXAMPLE_HAS_IMP_ALGEBRA_swigconstant(_IMP_example)
863 IMP_EXAMPLE_HAS_IMP_ALGEBRA = _IMP_example.IMP_EXAMPLE_HAS_IMP_ALGEBRA
864 
865 _IMP_example.IMP_EXAMPLE_HAS_IMP_CGAL_swigconstant(_IMP_example)
866 IMP_EXAMPLE_HAS_IMP_CGAL = _IMP_example.IMP_EXAMPLE_HAS_IMP_CGAL
867 
868 _IMP_example.IMP_EXAMPLE_HAS_IMP_DISPLAY_swigconstant(_IMP_example)
869 IMP_EXAMPLE_HAS_IMP_DISPLAY = _IMP_example.IMP_EXAMPLE_HAS_IMP_DISPLAY
870 
871 _IMP_example.IMP_EXAMPLE_HAS_IMP_EM_swigconstant(_IMP_example)
872 IMP_EXAMPLE_HAS_IMP_EM = _IMP_example.IMP_EXAMPLE_HAS_IMP_EM
873 
874 _IMP_example.IMP_EXAMPLE_HAS_IMP_ISD_swigconstant(_IMP_example)
875 IMP_EXAMPLE_HAS_IMP_ISD = _IMP_example.IMP_EXAMPLE_HAS_IMP_ISD
876 
877 _IMP_example.IMP_EXAMPLE_HAS_IMP_KERNEL_swigconstant(_IMP_example)
878 IMP_EXAMPLE_HAS_IMP_KERNEL = _IMP_example.IMP_EXAMPLE_HAS_IMP_KERNEL
879 
880 _IMP_example.IMP_EXAMPLE_HAS_IMP_RMF_swigconstant(_IMP_example)
881 IMP_EXAMPLE_HAS_IMP_RMF = _IMP_example.IMP_EXAMPLE_HAS_IMP_RMF
882 
883 _IMP_example.IMP_EXAMPLE_HAS_IMP_SAXS_swigconstant(_IMP_example)
884 IMP_EXAMPLE_HAS_IMP_SAXS = _IMP_example.IMP_EXAMPLE_HAS_IMP_SAXS
885 
886 _IMP_example.IMP_EXAMPLE_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_example)
887 IMP_EXAMPLE_HAS_IMP_SCORE_FUNCTOR = _IMP_example.IMP_EXAMPLE_HAS_IMP_SCORE_FUNCTOR
888 
889 _IMP_example.IMP_EXAMPLE_HAS_IMP_STATISTICS_swigconstant(_IMP_example)
890 IMP_EXAMPLE_HAS_IMP_STATISTICS = _IMP_example.IMP_EXAMPLE_HAS_IMP_STATISTICS
891 
892 _IMP_example.IMP_EXAMPLE_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_example)
893 IMP_EXAMPLE_HAS_BOOST_FILESYSTEM = _IMP_example.IMP_EXAMPLE_HAS_BOOST_FILESYSTEM
894 
895 _IMP_example.IMP_EXAMPLE_HAS_BOOST_GRAPH_swigconstant(_IMP_example)
896 IMP_EXAMPLE_HAS_BOOST_GRAPH = _IMP_example.IMP_EXAMPLE_HAS_BOOST_GRAPH
897 
898 _IMP_example.IMP_EXAMPLE_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_example)
899 IMP_EXAMPLE_HAS_BOOST_PROGRAMOPTIONS = _IMP_example.IMP_EXAMPLE_HAS_BOOST_PROGRAMOPTIONS
900 
901 _IMP_example.IMP_EXAMPLE_HAS_BOOST_RANDOM_swigconstant(_IMP_example)
902 IMP_EXAMPLE_HAS_BOOST_RANDOM = _IMP_example.IMP_EXAMPLE_HAS_BOOST_RANDOM
903 
904 _IMP_example.IMP_EXAMPLE_HAS_BOOST_REGEX_swigconstant(_IMP_example)
905 IMP_EXAMPLE_HAS_BOOST_REGEX = _IMP_example.IMP_EXAMPLE_HAS_BOOST_REGEX
906 
907 _IMP_example.IMP_EXAMPLE_HAS_BOOST_SERIALIZATION_swigconstant(_IMP_example)
908 IMP_EXAMPLE_HAS_BOOST_SERIALIZATION = _IMP_example.IMP_EXAMPLE_HAS_BOOST_SERIALIZATION
909 
910 _IMP_example.IMP_EXAMPLE_HAS_BOOST_SYSTEM_swigconstant(_IMP_example)
911 IMP_EXAMPLE_HAS_BOOST_SYSTEM = _IMP_example.IMP_EXAMPLE_HAS_BOOST_SYSTEM
912 
913 _IMP_example.IMP_EXAMPLE_HAS_CGAL_swigconstant(_IMP_example)
914 IMP_EXAMPLE_HAS_CGAL = _IMP_example.IMP_EXAMPLE_HAS_CGAL
915 
916 _IMP_example.IMP_EXAMPLE_HAS_HDF5_swigconstant(_IMP_example)
917 IMP_EXAMPLE_HAS_HDF5 = _IMP_example.IMP_EXAMPLE_HAS_HDF5
918 
919 _IMP_example.IMP_EXAMPLE_HAS_NUMPY_swigconstant(_IMP_example)
920 IMP_EXAMPLE_HAS_NUMPY = _IMP_example.IMP_EXAMPLE_HAS_NUMPY
921 
922 _IMP_example.IMP_EXAMPLE_HAS_RMF_swigconstant(_IMP_example)
923 IMP_EXAMPLE_HAS_RMF = _IMP_example.IMP_EXAMPLE_HAS_RMF
924 
925 _IMP_example.IMP_EXAMPLE_HAS_PYTHON_IHM_swigconstant(_IMP_example)
926 IMP_EXAMPLE_HAS_PYTHON_IHM = _IMP_example.IMP_EXAMPLE_HAS_PYTHON_IHM
927 
928 _IMP_example.IMP_EXAMPLE_HAS_EXAMPLEDEPENDENCY_swigconstant(_IMP_example)
929 IMP_EXAMPLE_HAS_EXAMPLEDEPENDENCY = _IMP_example.IMP_EXAMPLE_HAS_EXAMPLEDEPENDENCY
930 
931 _IMP_example.IMPEXAMPLE_SHOW_WARNINGS_swigconstant(_IMP_example)
932 IMPEXAMPLE_SHOW_WARNINGS = _IMP_example.IMPEXAMPLE_SHOW_WARNINGS
933 
934 _object_types.append("ExampleRestraint")
935 
936 
937 def _object_cast_to_ExampleRestraint(o):
938  """_object_cast_to_ExampleRestraint(Object o) -> ExampleRestraint"""
939  return _IMP_example._object_cast_to_ExampleRestraint(o)
940 
941 def ExampleDecorators(l=[]):
942  return [ExampleDecorator(x) for x in l]
943 _plural_types.append("ExampleDecorators")
944 
945 
946 _value_types.append("ExampleDecorator")
947 
948 
949 _object_types.append("ExampleUnaryFunction")
950 
951 
952 def _object_cast_to_ExampleUnaryFunction(o):
953  """_object_cast_to_ExampleUnaryFunction(Object o) -> ExampleUnaryFunction"""
954  return _IMP_example._object_cast_to_ExampleUnaryFunction(o)
955 
956 _object_types.append("ExampleSingletonModifier")
957 
958 
959 def _object_cast_to_ExampleSingletonModifier(o):
960  """_object_cast_to_ExampleSingletonModifier(Object o) -> ExampleSingletonModifier"""
961  return _IMP_example._object_cast_to_ExampleSingletonModifier(o)
962 
963 _object_types.append("ExamplePairScore")
964 
965 
966 def _object_cast_to_ExamplePairScore(o):
967  """_object_cast_to_ExamplePairScore(Object o) -> ExamplePairScore"""
968  return _IMP_example._object_cast_to_ExamplePairScore(o)
969 
970 _object_types.append("ExampleSubsetFilterTable")
971 
972 
973 def _object_cast_to_ExampleSubsetFilterTable(o):
974  """_object_cast_to_ExampleSubsetFilterTable(Object o) -> ExampleSubsetFilterTable"""
975  return _IMP_example._object_cast_to_ExampleSubsetFilterTable(o)
976 
977 _object_types.append("ExampleConstraint")
978 
979 
980 def _object_cast_to_ExampleConstraint(o):
981  """_object_cast_to_ExampleConstraint(Object o) -> ExampleConstraint"""
982  return _IMP_example._object_cast_to_ExampleConstraint(o)
983 
984 _object_types.append("ExampleObject")
985 
986 
987 def _object_cast_to_ExampleObject(o):
988  """_object_cast_to_ExampleObject(Object o) -> ExampleObject"""
989  return _IMP_example._object_cast_to_ExampleObject(o)
990 
991 ExampleTemplateClass3Ds=list
992 _plural_types.append("ExampleTemplateClass3Ds")
993 _value_types.append("ExampleTemplateClass3D")
994 
995 
996 def create_model_and_particles():
997  m = IMP.Model()
998  sc = IMP.container.ListSingletonContainer(m)
999  b = IMP.algebra.BoundingBox3D(IMP.algebra.Vector3D(0,0,0),
1000  IMP.algebra.Vector3D(10,10,10))
1001  for i in range(0,100):
1002  p = m.add_particle("p")
1003  sc.add(p)
1004  d = IMP.core.XYZR.setup_particle(m, p,
1005  IMP.algebra.Sphere3D(IMP.algebra.get_random_vector_in(b), 1))
1006  d.set_coordinates_are_optimized(True)
1007  return (m, sc)
1008 
1009 
1010 
1011 class PythonExampleRestraint(IMP.Restraint):
1012  """An example restraint written in Python.
1013  This should be functionally equivalent to the C++ ExampleRestraint.
1014  """
1015  def __init__(self, m, p, k):
1016  IMP.Restraint.__init__(self, m, "PythonExampleRestraint%1%")
1017  self.p, self.k = p, k
1018 
1019  def do_add_score_and_derivatives(self, sa):
1020  d = IMP.core.XYZ(self.get_model(), self.p)
1021  score = .5 * self.k * d.get_z() * d.get_z()
1022  if sa.get_derivative_accumulator():
1023  deriv = self.k * d.get_z()
1024  d.add_to_derivative(2, deriv, sa.get_derivative_accumulator())
1025  sa.add_score(score)
1026 
1027  def do_get_inputs(self):
1028  return [self.get_model().get_particle(self.p)]
1029 
1030 
1031 
1032 
1033 class PythonExamplePairScore(IMP.PairScore):
1034  """An example PairScore written in Python.
1035  This should be functionally equivalent to the C++ ExamplePairScore.
1036  """
1037  def __init__(self, x0, k):
1038  IMP.PairScore.__init__(self)
1039  self.x0, self.k = x0, k
1040 
1041  def evaluate_index(self, m, pip, da):
1042  d0 = IMP.core.XYZ(m, pip[0])
1043  d1 = IMP.core.XYZ(m, pip[1])
1044  diff = (d0.get_coordinates()
1045  - d1.get_coordinates()).get_magnitude() - self.x0
1046  score = .5 * self.k * diff * diff
1047  if da:
1048 # derivatives are requested
1049  delta = d0.get_coordinates() - d1.get_coordinates()
1050  udelta = delta.get_unit_vector()
1051  dv = self.k * diff
1052  d0.add_to_derivatives(udelta * dv, da)
1053  d1.add_to_derivatives(-udelta * dv, da)
1054  return score
1055 
1056  def do_get_inputs(self, m, pis):
1057  return IMP.get_particles(m, pis)
1058 
1059 
1060 
1061 
1062 class PythonExampleUnaryFunction(IMP.UnaryFunction):
1063  """An example UnaryFunction written in Python.
1064  This should be functionally equivalent to the C++ ExampleUnaryFunction.
1065  """
1066  def __init__(self, center, k):
1067  IMP.UnaryFunction.__init__(self)
1068  self.center, self.k = center, k
1069 
1070  def evaluate_with_derivative(self, feature):
1071  return (self.evaluate(feature), self.k * (feature - self.center))
1072 
1073  def evaluate(self, feature):
1074  return .5 * self.k * (feature - self.center) * (feature - self.center)
1075 
1076 
1077 
1078 
1079 class PythonExampleConstraint(IMP.Constraint):
1080  """An example Constraint written in Python.
1081  This should be functionally equivalent to the C++ ExampleConstraint.
1082  """
1083 
1084  k = None
1085 
1086  def __init__(self, p):
1087  IMP.Constraint.__init__(self, p.get_model(), "ExampleConstraint%1%")
1088  self.p = p
1089  if self.k is None:
1090  PythonExampleConstraint.k = IMP.IntKey("Constraint key")
1091  if not p.has_attribute(self.k):
1092  p.add_attribute(self.k, 0)
1093 
1094  def do_update_attributes(self):
1095  self.p.set_value(self.k, self.p.get_value(self.k) + 1)
1096 
1097  def do_update_derivatives(self, da):
1098  pass
1099 
1100  def do_get_inputs(self):
1101  return [self.p]
1102 
1103  def do_get_outputs(self):
1104  return [self.p]
1105 
1106 
1107 
1108 
1109 class PythonExampleSingletonModifier(IMP.SingletonModifier):
1110  """An example SingletonModifier written in Python.
1111  This should be functionally equivalent to the C++
1112  ExampleSingletonModifier.
1113  """
1114 
1115  def __init__(self, bb):
1116  IMP.SingletonModifier.__init__(self, "ExampleSingletonModifier%1%")
1117  self.bb = bb
1118 
1119  def apply_index(self, m, pi):
1120  d = IMP.core.XYZ(m, pi)
1121  for i in range(3):
1122 # shift the coordinate until it is in the box
1123  while d.get_coordinate(i) < self.bb.get_corner(0)[i]:
1124  d.set_coordinate(i,d.get_coordinate(i) + \
1125  (self.bb.get_corner(1)[i] - self.bb.get_corner(0)[i]))
1126  while d.get_coordinate(i) > self.bb.get_corner(1)[i]:
1127  d.set_coordinate(i,d.get_coordinate(i) - \
1128  (self.bb.get_corner(1)[i] - self.bb.get_corner(0)[i]))
1129 
1130  def do_get_inputs(self, m, pis):
1131  return IMP.get_particles(m, pis)
1132 
1133  def do_get_outputs(self, m, pis):
1134  return self.do_get_inputs(m, pis)
1135 
1136 
1137 class ExampleRestraint(IMP.Restraint):
1138  """Proxy of C++ IMP::example::ExampleRestraint class"""
1139  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1140 
1141  def __init__(self, m, p, k):
1142  """__init__(IMP::example::ExampleRestraint self, Model m, ParticleIndex p, double k) -> ExampleRestraint"""
1143  this = _IMP_example.new_ExampleRestraint(m, p, k)
1144  try:
1145  self.this.append(this)
1146  except:
1147  self.this = this
1148 
1149  def do_add_score_and_derivatives(self, sa):
1150  """do_add_score_and_derivatives(ExampleRestraint self, ScoreAccumulator sa)"""
1151  return _IMP_example.ExampleRestraint_do_add_score_and_derivatives(self, sa)
1152 
1153 
1154  def do_get_inputs(self):
1155  """do_get_inputs(ExampleRestraint self) -> IMP::ModelObjectsTemp"""
1156  return _IMP_example.ExampleRestraint_do_get_inputs(self)
1157 
1158 
1159  def get_version_info(self):
1160  """get_version_info(ExampleRestraint self) -> VersionInfo"""
1161  return _IMP_example.ExampleRestraint_get_version_info(self)
1162 
1163 
1164  def __str__(self):
1165  """__str__(ExampleRestraint self) -> std::string"""
1166  return _IMP_example.ExampleRestraint___str__(self)
1167 
1168 
1169  def __repr__(self):
1170  """__repr__(ExampleRestraint self) -> std::string"""
1171  return _IMP_example.ExampleRestraint___repr__(self)
1172 
1173 
1174  @staticmethod
1175  def get_from(o):
1176  return _object_cast_to_ExampleRestraint(o)
1177 
1178 ExampleRestraint_swigregister = _IMP_example.ExampleRestraint_swigregister
1179 ExampleRestraint_swigregister(ExampleRestraint)
1180 
1181 class ExampleDecorator(IMP.Decorator):
1182  """Proxy of C++ IMP::example::ExampleDecorator class"""
1183  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1184 
1185  def get_decorator_name(self):
1186  """get_decorator_name(ExampleDecorator self) -> std::string"""
1187  return _IMP_example.ExampleDecorator_get_decorator_name(self)
1188 
1189 
1190  def set_decorator_name(self, nm):
1191  """set_decorator_name(ExampleDecorator self, std::string nm)"""
1192  return _IMP_example.ExampleDecorator_set_decorator_name(self, nm)
1193 
1194 
1195  def __init__(self, *args):
1196  """
1197  __init__(IMP::example::ExampleDecorator self) -> ExampleDecorator
1198  __init__(IMP::example::ExampleDecorator self, Model m, ParticleIndex id) -> ExampleDecorator
1199  __init__(IMP::example::ExampleDecorator self, _ParticleAdaptor d) -> ExampleDecorator
1200  """
1201  this = _IMP_example.new_ExampleDecorator(*args)
1202  try:
1203  self.this.append(this)
1204  except:
1205  self.this = this
1206 
1207  def get_is_setup(*args):
1208  """
1209  get_is_setup(Model m, ParticleIndex pi) -> bool
1210  get_is_setup(_ParticleAdaptor p) -> bool
1211  """
1212  return _IMP_example.ExampleDecorator_get_is_setup(*args)
1213 
1214  get_is_setup = staticmethod(get_is_setup)
1215 
1216  def show(self, *args):
1217  """
1218  show(ExampleDecorator self, _ostream out)
1219  show(ExampleDecorator self)
1220  """
1221  return _IMP_example.ExampleDecorator_show(self, *args)
1222 
1223 
1224  def setup_particle(*args):
1225  """
1226  setup_particle(Model m, ParticleIndex pi, std::string name) -> ExampleDecorator
1227  setup_particle(_ParticleAdaptor decorator, std::string name) -> ExampleDecorator
1228  """
1229  return _IMP_example.ExampleDecorator_setup_particle(*args)
1230 
1231  setup_particle = staticmethod(setup_particle)
1232 
1233  def add_attribute(self, *args):
1234  """
1235  add_attribute(ExampleDecorator self, FloatKey k, IMP::Float v, bool opt)
1236  add_attribute(ExampleDecorator self, FloatKey a0, IMP::Float a1)
1237  add_attribute(ExampleDecorator self, IntKey a0, IMP::Int a1)
1238  add_attribute(ExampleDecorator self, FloatsKey a0, IMP::Floats a1)
1239  add_attribute(ExampleDecorator self, IntsKey a0, IMP::Ints a1)
1240  add_attribute(ExampleDecorator self, StringKey a0, IMP::String a1)
1241  add_attribute(ExampleDecorator self, ParticleIndexKey a0, Particle a1)
1242  add_attribute(ExampleDecorator self, ObjectKey a0, Object a1)
1243  """
1244  return _IMP_example.ExampleDecorator_add_attribute(self, *args)
1245 
1246 
1247  def get_value(self, *args):
1248  """
1249  get_value(ExampleDecorator self, FloatKey a0) -> IMP::Float
1250  get_value(ExampleDecorator self, IntKey a0) -> IMP::Int
1251  get_value(ExampleDecorator self, FloatsKey a0) -> IMP::Floats
1252  get_value(ExampleDecorator self, IntsKey a0) -> IMP::Ints
1253  get_value(ExampleDecorator self, StringKey a0) -> IMP::String
1254  get_value(ExampleDecorator self, ParticleIndexKey a0) -> Particle
1255  get_value(ExampleDecorator self, ObjectKey a0) -> Object
1256  """
1257  return _IMP_example.ExampleDecorator_get_value(self, *args)
1258 
1259 
1260  def set_value(self, *args):
1261  """
1262  set_value(ExampleDecorator self, FloatKey a0, IMP::Float a1)
1263  set_value(ExampleDecorator self, IntKey a0, IMP::Int a1)
1264  set_value(ExampleDecorator self, FloatsKey a0, IMP::Floats a1)
1265  set_value(ExampleDecorator self, IntsKey a0, IMP::Ints a1)
1266  set_value(ExampleDecorator self, StringKey a0, IMP::String a1)
1267  set_value(ExampleDecorator self, ParticleIndexKey a0, Particle a1)
1268  set_value(ExampleDecorator self, ObjectKey a0, Object a1)
1269  """
1270  return _IMP_example.ExampleDecorator_set_value(self, *args)
1271 
1272 
1273  def remove_attribute(self, *args):
1274  """
1275  remove_attribute(ExampleDecorator self, FloatKey a0)
1276  remove_attribute(ExampleDecorator self, IntKey a0)
1277  remove_attribute(ExampleDecorator self, FloatsKey a0)
1278  remove_attribute(ExampleDecorator self, IntsKey a0)
1279  remove_attribute(ExampleDecorator self, StringKey a0)
1280  remove_attribute(ExampleDecorator self, ParticleIndexKey a0)
1281  remove_attribute(ExampleDecorator self, ObjectKey a0)
1282  """
1283  return _IMP_example.ExampleDecorator_remove_attribute(self, *args)
1284 
1285 
1286  def has_attribute(self, *args):
1287  """
1288  has_attribute(ExampleDecorator self, FloatKey a0) -> bool
1289  has_attribute(ExampleDecorator self, IntKey a0) -> bool
1290  has_attribute(ExampleDecorator self, FloatsKey a0) -> bool
1291  has_attribute(ExampleDecorator self, IntsKey a0) -> bool
1292  has_attribute(ExampleDecorator self, StringKey a0) -> bool
1293  has_attribute(ExampleDecorator self, ParticleIndexKey a0) -> bool
1294  has_attribute(ExampleDecorator self, ObjectKey a0) -> bool
1295  """
1296  return _IMP_example.ExampleDecorator_has_attribute(self, *args)
1297 
1298 
1299  def get_derivative(self, a0):
1300  """get_derivative(ExampleDecorator self, FloatKey a0) -> double"""
1301  return _IMP_example.ExampleDecorator_get_derivative(self, a0)
1302 
1303 
1304  def get_name(self):
1305  """get_name(ExampleDecorator self) -> std::string"""
1306  return _IMP_example.ExampleDecorator_get_name(self)
1307 
1308 
1309  def clear_caches(self):
1310  """clear_caches(ExampleDecorator self)"""
1311  return _IMP_example.ExampleDecorator_clear_caches(self)
1312 
1313 
1314  def set_name(self, a0):
1315  """set_name(ExampleDecorator self, std::string a0)"""
1316  return _IMP_example.ExampleDecorator_set_name(self, a0)
1317 
1318 
1319  def set_check_level(self, a0):
1320  """set_check_level(ExampleDecorator self, IMP::CheckLevel a0)"""
1321  return _IMP_example.ExampleDecorator_set_check_level(self, a0)
1322 
1323 
1324  def add_to_derivative(self, a0, a1, a2):
1325  """add_to_derivative(ExampleDecorator self, FloatKey a0, double a1, DerivativeAccumulator a2)"""
1326  return _IMP_example.ExampleDecorator_add_to_derivative(self, a0, a1, a2)
1327 
1328 
1329  def set_is_optimized(self, a0, a1):
1330  """set_is_optimized(ExampleDecorator self, FloatKey a0, bool a1)"""
1331  return _IMP_example.ExampleDecorator_set_is_optimized(self, a0, a1)
1332 
1333 
1334  def get_is_optimized(self, a0):
1335  """get_is_optimized(ExampleDecorator self, FloatKey a0) -> bool"""
1336  return _IMP_example.ExampleDecorator_get_is_optimized(self, a0)
1337 
1338 
1339  def get_check_level(self):
1340  """get_check_level(ExampleDecorator self) -> IMP::CheckLevel"""
1341  return _IMP_example.ExampleDecorator_get_check_level(self)
1342 
1343 
1344  def __eq__(self, *args):
1345  """
1346  __eq__(ExampleDecorator self, ExampleDecorator o) -> bool
1347  __eq__(ExampleDecorator self, Particle d) -> bool
1348  """
1349  return _IMP_example.ExampleDecorator___eq__(self, *args)
1350 
1351 
1352  def __ne__(self, *args):
1353  """
1354  __ne__(ExampleDecorator self, ExampleDecorator o) -> bool
1355  __ne__(ExampleDecorator self, Particle d) -> bool
1356  """
1357  return _IMP_example.ExampleDecorator___ne__(self, *args)
1358 
1359 
1360  def __le__(self, *args):
1361  """
1362  __le__(ExampleDecorator self, ExampleDecorator o) -> bool
1363  __le__(ExampleDecorator self, Particle d) -> bool
1364  """
1365  return _IMP_example.ExampleDecorator___le__(self, *args)
1366 
1367 
1368  def __lt__(self, *args):
1369  """
1370  __lt__(ExampleDecorator self, ExampleDecorator o) -> bool
1371  __lt__(ExampleDecorator self, Particle d) -> bool
1372  """
1373  return _IMP_example.ExampleDecorator___lt__(self, *args)
1374 
1375 
1376  def __ge__(self, *args):
1377  """
1378  __ge__(ExampleDecorator self, ExampleDecorator o) -> bool
1379  __ge__(ExampleDecorator self, Particle d) -> bool
1380  """
1381  return _IMP_example.ExampleDecorator___ge__(self, *args)
1382 
1383 
1384  def __gt__(self, *args):
1385  """
1386  __gt__(ExampleDecorator self, ExampleDecorator o) -> bool
1387  __gt__(ExampleDecorator self, Particle d) -> bool
1388  """
1389  return _IMP_example.ExampleDecorator___gt__(self, *args)
1390 
1391 
1392  def __hash__(self):
1393  """__hash__(ExampleDecorator self) -> std::size_t"""
1394  return _IMP_example.ExampleDecorator___hash__(self)
1395 
1396 
1397  def __str__(self):
1398  """__str__(ExampleDecorator self) -> std::string"""
1399  return _IMP_example.ExampleDecorator___str__(self)
1400 
1401 
1402  def __repr__(self):
1403  """__repr__(ExampleDecorator self) -> std::string"""
1404  return _IMP_example.ExampleDecorator___repr__(self)
1405 
1406  __swig_destroy__ = _IMP_example.delete_ExampleDecorator
1407  __del__ = lambda self: None
1408 ExampleDecorator_swigregister = _IMP_example.ExampleDecorator_swigregister
1409 ExampleDecorator_swigregister(ExampleDecorator)
1410 
1411 def ExampleDecorator_get_is_setup(*args):
1412  """
1413  get_is_setup(Model m, ParticleIndex pi) -> bool
1414  ExampleDecorator_get_is_setup(_ParticleAdaptor p) -> bool
1415  """
1416  return _IMP_example.ExampleDecorator_get_is_setup(*args)
1417 
1418 def ExampleDecorator_setup_particle(*args):
1419  """
1420  setup_particle(Model m, ParticleIndex pi, std::string name) -> ExampleDecorator
1421  ExampleDecorator_setup_particle(_ParticleAdaptor decorator, std::string name) -> ExampleDecorator
1422  """
1423  return _IMP_example.ExampleDecorator_setup_particle(*args)
1424 
1425 
1426 def __lshift__(out, n):
1427  """__lshift__(_ostream out, ExampleDecorator n) -> _ostream"""
1428  return _IMP_example.__lshift__(out, n)
1429 class ExampleUnaryFunction(IMP.UnaryFunction):
1430  """Proxy of C++ IMP::example::ExampleUnaryFunction class"""
1431  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1432 
1433  def __init__(self, center, k):
1434  """__init__(IMP::example::ExampleUnaryFunction self, IMP::Float center, IMP::Float k) -> ExampleUnaryFunction"""
1435  this = _IMP_example.new_ExampleUnaryFunction(center, k)
1436  try:
1437  self.this.append(this)
1438  except:
1439  self.this = this
1440 
1441  def get_version_info(self):
1442  """get_version_info(ExampleUnaryFunction self) -> VersionInfo"""
1443  return _IMP_example.ExampleUnaryFunction_get_version_info(self)
1444 
1445 
1446  def __str__(self):
1447  """__str__(ExampleUnaryFunction self) -> std::string"""
1448  return _IMP_example.ExampleUnaryFunction___str__(self)
1449 
1450 
1451  def __repr__(self):
1452  """__repr__(ExampleUnaryFunction self) -> std::string"""
1453  return _IMP_example.ExampleUnaryFunction___repr__(self)
1454 
1455 
1456  @staticmethod
1457  def get_from(o):
1458  return _object_cast_to_ExampleUnaryFunction(o)
1459 
1460 ExampleUnaryFunction_swigregister = _IMP_example.ExampleUnaryFunction_swigregister
1461 ExampleUnaryFunction_swigregister(ExampleUnaryFunction)
1462 
1463 class ExampleObject(IMP.Object):
1464  """Proxy of C++ IMP::example::ExampleObject class"""
1465  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1466 
1467  def __init__(self, data):
1468  """__init__(IMP::example::ExampleObject self, IMP::Floats const & data) -> ExampleObject"""
1469  this = _IMP_example.new_ExampleObject(data)
1470  try:
1471  self.this.append(this)
1472  except:
1473  self.this = this
1474 
1475  def get_data(self, i):
1476  """get_data(ExampleObject self, unsigned int i) -> double"""
1477  return _IMP_example.ExampleObject_get_data(self, i)
1478 
1479 
1480  def get_version_info(self):
1481  """get_version_info(ExampleObject self) -> VersionInfo"""
1482  return _IMP_example.ExampleObject_get_version_info(self)
1483 
1484 
1485  def __str__(self):
1486  """__str__(ExampleObject self) -> std::string"""
1487  return _IMP_example.ExampleObject___str__(self)
1488 
1489 
1490  def __repr__(self):
1491  """__repr__(ExampleObject self) -> std::string"""
1492  return _IMP_example.ExampleObject___repr__(self)
1493 
1494 
1495  @staticmethod
1496  def get_from(o):
1497  return _object_cast_to_ExampleObject(o)
1498 
1499 ExampleObject_swigregister = _IMP_example.ExampleObject_swigregister
1500 ExampleObject_swigregister(ExampleObject)
1501 
1502 class ExampleSingletonModifier(IMP.SingletonModifier):
1503  """Proxy of C++ IMP::example::ExampleSingletonModifier class"""
1504  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1505 
1506  def __init__(self, bb):
1507  """__init__(IMP::example::ExampleSingletonModifier self, BoundingBox3D bb) -> ExampleSingletonModifier"""
1508  this = _IMP_example.new_ExampleSingletonModifier(bb)
1509  try:
1510  self.this.append(this)
1511  except:
1512  self.this = this
1513 
1514  def do_get_inputs(self, m, pis):
1515  """do_get_inputs(ExampleSingletonModifier self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
1516  return _IMP_example.ExampleSingletonModifier_do_get_inputs(self, m, pis)
1517 
1518 
1519  def do_get_outputs(self, m, pis):
1520  """do_get_outputs(ExampleSingletonModifier self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
1521  return _IMP_example.ExampleSingletonModifier_do_get_outputs(self, m, pis)
1522 
1523 
1524  def get_version_info(self):
1525  """get_version_info(ExampleSingletonModifier self) -> VersionInfo"""
1526  return _IMP_example.ExampleSingletonModifier_get_version_info(self)
1527 
1528 
1529  def __str__(self):
1530  """__str__(ExampleSingletonModifier self) -> std::string"""
1531  return _IMP_example.ExampleSingletonModifier___str__(self)
1532 
1533 
1534  def __repr__(self):
1535  """__repr__(ExampleSingletonModifier self) -> std::string"""
1536  return _IMP_example.ExampleSingletonModifier___repr__(self)
1537 
1538 
1539  @staticmethod
1540  def get_from(o):
1541  return _object_cast_to_ExampleSingletonModifier(o)
1542 
1543 ExampleSingletonModifier_swigregister = _IMP_example.ExampleSingletonModifier_swigregister
1544 ExampleSingletonModifier_swigregister(ExampleSingletonModifier)
1545 
1546 class ExamplePairScore(IMP.PairScore):
1547  """Proxy of C++ IMP::example::ExamplePairScore class"""
1548  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1549 
1550  def __init__(self, x0, k):
1551  """__init__(IMP::example::ExamplePairScore self, double x0, double k) -> ExamplePairScore"""
1552  this = _IMP_example.new_ExamplePairScore(x0, k)
1553  try:
1554  self.this.append(this)
1555  except:
1556  self.this = this
1557 
1558  def do_get_inputs(self, m, pis):
1559  """do_get_inputs(ExamplePairScore self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
1560  return _IMP_example.ExamplePairScore_do_get_inputs(self, m, pis)
1561 
1562 
1563  def get_version_info(self):
1564  """get_version_info(ExamplePairScore self) -> VersionInfo"""
1565  return _IMP_example.ExamplePairScore_get_version_info(self)
1566 
1567 
1568  def __str__(self):
1569  """__str__(ExamplePairScore self) -> std::string"""
1570  return _IMP_example.ExamplePairScore___str__(self)
1571 
1572 
1573  def __repr__(self):
1574  """__repr__(ExamplePairScore self) -> std::string"""
1575  return _IMP_example.ExamplePairScore___repr__(self)
1576 
1577 
1578  @staticmethod
1579  def get_from(o):
1580  return _object_cast_to_ExamplePairScore(o)
1581 
1582 ExamplePairScore_swigregister = _IMP_example.ExamplePairScore_swigregister
1583 ExamplePairScore_swigregister(ExamplePairScore)
1584 
1585 class ExampleSubsetFilterTable(IMP.domino.SubsetFilterTable):
1586  """Proxy of C++ IMP::example::ExampleSubsetFilterTable class"""
1587  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1588 
1589  def __init__(self, max_diff, pt):
1590  """__init__(IMP::example::ExampleSubsetFilterTable self, unsigned int max_diff, IMP::ParticlesTemp const & pt) -> ExampleSubsetFilterTable"""
1591  this = _IMP_example.new_ExampleSubsetFilterTable(max_diff, pt)
1592  try:
1593  self.this.append(this)
1594  except:
1595  self.this = this
1596 
1597  def get_version_info(self):
1598  """get_version_info(ExampleSubsetFilterTable self) -> VersionInfo"""
1599  return _IMP_example.ExampleSubsetFilterTable_get_version_info(self)
1600 
1601 
1602  def __str__(self):
1603  """__str__(ExampleSubsetFilterTable self) -> std::string"""
1604  return _IMP_example.ExampleSubsetFilterTable___str__(self)
1605 
1606 
1607  def __repr__(self):
1608  """__repr__(ExampleSubsetFilterTable self) -> std::string"""
1609  return _IMP_example.ExampleSubsetFilterTable___repr__(self)
1610 
1611 
1612  @staticmethod
1613  def get_from(o):
1614  return _object_cast_to_ExampleSubsetFilterTable(o)
1615 
1616 ExampleSubsetFilterTable_swigregister = _IMP_example.ExampleSubsetFilterTable_swigregister
1617 ExampleSubsetFilterTable_swigregister(ExampleSubsetFilterTable)
1618 
1619 class ExampleConstraint(IMP.Constraint):
1620  """Proxy of C++ IMP::example::ExampleConstraint class"""
1621  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1622 
1623  def __init__(self, p):
1624  """__init__(IMP::example::ExampleConstraint self, Particle p) -> ExampleConstraint"""
1625  this = _IMP_example.new_ExampleConstraint(p)
1626  try:
1627  self.this.append(this)
1628  except:
1629  self.this = this
1630 
1631  def do_get_inputs(self):
1632  """do_get_inputs(ExampleConstraint self) -> IMP::ModelObjectsTemp"""
1633  return _IMP_example.ExampleConstraint_do_get_inputs(self)
1634 
1635 
1636  def do_get_outputs(self):
1637  """do_get_outputs(ExampleConstraint self) -> IMP::ModelObjectsTemp"""
1638  return _IMP_example.ExampleConstraint_do_get_outputs(self)
1639 
1640 
1641  def get_key():
1642  """get_key() -> IntKey"""
1643  return _IMP_example.ExampleConstraint_get_key()
1644 
1645  get_key = staticmethod(get_key)
1646 
1647  def get_version_info(self):
1648  """get_version_info(ExampleConstraint self) -> VersionInfo"""
1649  return _IMP_example.ExampleConstraint_get_version_info(self)
1650 
1651 
1652  def __str__(self):
1653  """__str__(ExampleConstraint self) -> std::string"""
1654  return _IMP_example.ExampleConstraint___str__(self)
1655 
1656 
1657  def __repr__(self):
1658  """__repr__(ExampleConstraint self) -> std::string"""
1659  return _IMP_example.ExampleConstraint___repr__(self)
1660 
1661 
1662  @staticmethod
1663  def get_from(o):
1664  return _object_cast_to_ExampleConstraint(o)
1665 
1666 ExampleConstraint_swigregister = _IMP_example.ExampleConstraint_swigregister
1667 ExampleConstraint_swigregister(ExampleConstraint)
1668 
1669 def ExampleConstraint_get_key():
1670  """ExampleConstraint_get_key() -> IntKey"""
1671  return _IMP_example.ExampleConstraint_get_key()
1672 
1673 
1674 def get_number_of_incidences(psa, psb, point_distance):
1675  """get_number_of_incidences(IMP::ParticlesTemp const & psa, IMP::ParticlesTemp const & psb, double point_distance) -> unsigned int"""
1676  return _IMP_example.get_number_of_incidences(psa, psb, point_distance)
1677 
1678 def create_chain_restraint(m, ps, length_factor, k, name):
1679  """create_chain_restraint(Model m, IMP::ParticleIndexes const & ps, double length_factor, double k, std::string name) -> Restraint"""
1680  return _IMP_example.create_chain_restraint(m, ps, length_factor, k, name)
1681 
1682 def create_excluded_volume(m, ps, k, name):
1683  """create_excluded_volume(Model m, IMP::ParticleIndexes const & ps, double k, std::string name) -> Restraint"""
1684  return _IMP_example.create_excluded_volume(m, ps, k, name)
1685 class ExampleTemplateClass3D(object):
1686  """Proxy of C++ IMP::example::ExampleTemplateClassD<(3)> class"""
1687  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1688 
1689  def __init__(self, *args):
1690  """
1691  __init__(IMP::example::ExampleTemplateClassD<(3)> self) -> ExampleTemplateClass3D
1692  __init__(IMP::example::ExampleTemplateClassD<(3)> self, Vector3D a, Vector3D b) -> ExampleTemplateClass3D
1693  """
1694  this = _IMP_example.new_ExampleTemplateClass3D(*args)
1695  try:
1696  self.this.append(this)
1697  except:
1698  self.this = this
1699 
1700  def get_point(self, i):
1701  """get_point(ExampleTemplateClass3D self, unsigned int i) -> Vector3D"""
1702  return _IMP_example.ExampleTemplateClass3D_get_point(self, i)
1703 
1704 
1705  def show(self, *args):
1706  """
1707  show(ExampleTemplateClass3D self, _ostream out)
1708  show(ExampleTemplateClass3D self)
1709  """
1710  return _IMP_example.ExampleTemplateClass3D_show(self, *args)
1711 
1712 
1713  def __str__(self):
1714  """__str__(ExampleTemplateClass3D self) -> std::string"""
1715  return _IMP_example.ExampleTemplateClass3D___str__(self)
1716 
1717 
1718  def __repr__(self):
1719  """__repr__(ExampleTemplateClass3D self) -> std::string"""
1720  return _IMP_example.ExampleTemplateClass3D___repr__(self)
1721 
1722  __swig_destroy__ = _IMP_example.delete_ExampleTemplateClass3D
1723  __del__ = lambda self: None
1724 ExampleTemplateClass3D_swigregister = _IMP_example.ExampleTemplateClass3D_swigregister
1725 ExampleTemplateClass3D_swigregister(ExampleTemplateClass3D)
1726 
1727 
1728 def get_module_version():
1729  """get_module_version() -> std::string const"""
1730  return _IMP_example.get_module_version()
1731 
1732 def get_example_path(fname):
1733  """get_example_path(std::string fname) -> std::string"""
1734  return _IMP_example.get_example_path(fname)
1735 
1736 def get_data_path(fname):
1737  """get_data_path(std::string fname) -> std::string"""
1738  return _IMP_example.get_data_path(fname)
1739 
1740 from . import _version_check
1741 _version_check.check_version(get_module_version())
1742 __version__ = get_module_version()
1743 
1744 
1745 
IMP::example::get_number_of_incidences
unsigned int get_number_of_incidences(const ParticlesTemp &psa, const ParticlesTemp &psb, double point_distance)
Definition: counting.h:23
IMP::SingletonModifier
A base class for modifiers of ParticlesTemp.
Definition: SingletonModifier.h:32
IMP::PairScore
Abstract class for scoring object(s) of type ParticleIndexPair.
Definition: PairScore.h:42
IMP::UnaryFunction::evaluate
virtual double evaluate(double feature) const
Calculate score with respect to the given feature.
Definition: UnaryFunction.h:33
IMP::example.PythonExamplePairScore
An example PairScore written in Python.
Definition: example/__init__.py:1033
IMP::example.PythonExampleSingletonModifier
An example SingletonModifier written in Python.
Definition: example/__init__.py:1109
IMP::container
Various classes to hold sets of particles.
IMP::core::XYZR::setup_particle
static XYZR setup_particle(Model *m, ParticleIndex pi)
Definition: XYZR.h:48
IMP::example.PythonExampleUnaryFunction
An example UnaryFunction written in Python.
Definition: example/__init__.py:1062
IMP::cgal
Make CGAL functionality available to IMP.
IMP::example::ExampleTemplateClassD
A line segment templated on the dimension.
Definition: ExampleTemplateClass.h:32
IMP::get_particles
ParticlesTemp get_particles(Model *m, const ParticleIndexes &ps)
Get the particles from a list of indexes.
IMP::Object::clear_caches
virtual void clear_caches()
Definition: Object.h:227
IMP::ParticleOutputs::do_get_outputs
virtual ModelObjectsTemp do_get_outputs(Model *m, const ParticleIndexes &pis) const =0
Overload this method to specify the outputs.
IMP::score_functor
Composable functors to implement scores via compile-time composition.
IMP::example::create_excluded_volume
Restraint * create_excluded_volume(Model *m, const ParticleIndexes &ps, double k, std::string name)
Definition: creating_restraints.h:50
IMP::algebra::get_random_vector_in
Vector3D get_random_vector_in(const Cylinder3D &c)
Generate a random vector in a cylinder with uniform density.
IMP::statistics
Code to compute statistical measures.
IMP::Constraint
Implement a constraint on the Model.
Definition: Constraint.h:49
IMP::Model
Class for storing model, its restraints, constraints, and particles.
Definition: Model.h:73
IMP::example::ExampleObject
An example simple object which is reference counted.
Definition: ExampleObject.h:29
IMP::example::ExampleDecorator
A simple decorator which adds a name to a particle.
Definition: ExampleDecorator.h:32
IMP::example.PythonExampleConstraint
An example Constraint written in Python.
Definition: example/__init__.py:1079
IMP::Object
Common base class for heavy weight IMP objects.
Definition: Object.h:106
IMP::container::ListSingletonContainer
Store a list of ParticleIndexes.
Definition: ListSingletonContainer.h:33
IMP::example.PythonExampleRestraint
An example restraint written in Python.
Definition: example/__init__.py:1011
IMP::ParticleInputs::do_get_inputs
virtual ModelObjectsTemp do_get_inputs(Model *m, const ParticleIndexes &pis) const =0
Overload this method to specify the inputs.
IMP::example::ExampleRestraint
Restrain a particle to be in the x,y plane.
Definition: ExampleRestraint.h:25
IMP::em
Basic utilities for handling cryo-electron microscopy 3D density maps.
IMP::core::XYZ
A decorator for a particle with x,y,z coordinates.
Definition: XYZ.h:30
IMP::Decorator
Interface to specialized Particle types (e.g. atoms)
Definition: Decorator.h:118
IMP::ModelObject::do_get_outputs
virtual ModelObjectsTemp do_get_outputs() const =0
IMP::core
Basic functionality that is expected to be used by a wide variety of IMP users.
IMP::algebra
General purpose algebraic and geometric methods that are expected to be used by a wide variety of IMP...
IMP::SingletonModifier::apply_index
virtual void apply_index(Model *m, ParticleIndex v) const =0
IMP::example::get_module_version
std::string get_module_version()
Return the version of this module, as a string.
Definition: EMageFit/__init__.py:5
IMP::Object::get_version_info
virtual VersionInfo get_version_info() const
Get information about the module and version of the object.
Definition: Object.h:173
IMP::UnaryFunction::evaluate_with_derivative
virtual DerivativePair evaluate_with_derivative(double feature) const
Calculate score and derivative with respect to the given feature.
Definition: UnaryFunction.h:48
IMP::algebra::Vector3D
VectorD< 3 > Vector3D
Definition: VectorD.h:421
IMP::Object::set_check_level
void set_check_level(CheckLevel l)
IMP::example::ExamplePairScore
Apply a harmonic to the distance between two particles.
Definition: ExamplePairScore.h:25
IMP::example::create_chain_restraint
Restraint * create_chain_restraint(Model *m, const ParticleIndexes &ps, double length_factor, double k, std::string name)
Definition: creating_restraints.h:31
IMP::example::get_example_path
std::string get_example_path(std::string file_name)
Return the full path to one of this module's example files.
IMP::ModelObject::get_model
Model * get_model() const
Definition: ModelObject.h:42
IMP::example::ExampleConstraint
A trivial constraint that just increments a counter.
Definition: ExampleConstraint.h:23
IMP::display
Output IMP model data in various file formats.
IMP::atom
Functionality for loading, creating, manipulating and scoring atomic structures.
IMP::example::get_data_path
std::string get_data_path(std::string file_name)
Return the full path to one of this module's data files.
IMP::rmf
Support for the RMF file format for storing hierarchical molecular data and markup.
IMP::UnaryFunction
Abstract single variable functor class for score functions.
Definition: UnaryFunction.h:25
IMP::ModelObject::do_get_inputs
virtual ModelObjectsTemp do_get_inputs() const =0
IMP::domino
Divide-and-conquer inferential optimization in discrete space.
IMP::PairScore::evaluate_index
virtual double evaluate_index(Model *m, const ParticleIndexPair &vt, DerivativeAccumulator *da) const =0
Compute the score and the derivative if needed.
IMP::saxs
Support for small angle X-ray scattering (SAXS) data.
IMP::isd
Inferential scoring building on methods developed as part of the Inferential Structure Determination ...
IMP::Restraint
A restraint is a term in an IMP ScoringFunction.
Definition: Restraint.h:53