em Directory Reference

Directory dependency graph for em:

Files
file	BayesEM3D.h [code]
	Compute a Bayesian formalism score and its derivatives to assess degree of match between a tested model and a density object.
file	CoarseCC.h [code]
	Perform coarse fitting between two density objects.
file	CoarseCCatIntervals.h [code]
	Cross correlation coefficient calculator.
file	CoarseConvolution.h [code]
	Convolutes two grids.
file	converters.h [code]
	Converters of density values.
file	def.h [code]
	Definitions for EMBED.
file	density_map_volumetrics.h [code]
	Classes and functions to handle volumetric properties in Density maps.
file	density_utilities.h [code]
	density map manipulations
file	DensityFillingRestraint.h [code]
	Score how well the particles fill the density.
file	DensityHeader.h [code]
	Metadata for a density file.
file	DensityMap.h [code]
	Class for handling density maps.
file	em_config.h [code]
file	em/embedding.h [code]
	Cluster sets of points.
file	EMReaderWriter.h [code]
	Classes to read or write density files in EM format.
file	envelope_penetration.h [code]
	functions for calculation envelope penetration
file	EnvelopeFitRestraint.h [code]
	score envelope fit based on map distance transform
file	EnvelopePenetrationRestraint.h [code]
	Score how well a protein is inside its density.
file	EnvelopeScore.h [code]
	class for envelope based scoring using MapDistanceTransform
file	exp.h [code]
	An approximation of the exponential function.
file	FitRestraint.h [code]
	Calculate score based on fit to EM map.
file	FitRestraintBayesEM3D.h [code]
	Calculate the Bayesian score and derivative based on fit to an EM density map. This restraint differs from em::FitRestraint because it does not use a cross_correlation_coefficient as score but a Bayesian similarity measure.
file	header_converters.h [code]
	Functions to convert between ImageHeader and DensityHeader Copyright 2007-2022 IMP Inventors. All rights reserved.
file	ImageHeader.h [code]
	Header for EM images. Compatible with Spider and Xmipp formats Copyright 2007-2022 IMP Inventors. All rights reserved.
file	KernelParameters.h [code]
	Calculates and stores Gaussian kernel parameters.
file	MapDistanceTransform.h [code]
	class for computing a distance transform of the density map
file	MapReaderWriter.h [code]
	An abstract class for reading a map.
file	masking.h [code]
	masking tools
file	MRCReaderWriter.h [code]
	Classes to read or write MRC files.
file	PCAAligner.h [code]
	Fast alignment of points to a density map using principal components.
file	PCAFitRestraint.h [code]
	Calculate match between density map PCA and particles PCA.
file	rigid_fitting.h [code]
	preforms rigid fitting between a set of particles and a density map
file	SampledDensityMap.h [code]
	Sampled density map.
file	SpiderHeader.h [code]
	Header for Spider and Xmipp formats.
file	SpiderReaderWriter.h [code]
	Management of Spider Headers Electron Microscopy. Compatible with Spider and Xmipp formats Copyright 2007-2022 IMP Inventors. All rights reserved.
file	SurfaceShellDensityMap.h [code]
	Represent a molecule as shells of distance from the surface.
file	Voxel.h [code]
	voxel decorator.
file	XplorReaderWriter.h [code]
	Classes to read or write density files in XPLOR format.