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IMP Reference Guide  2.18.0
The Integrative Modeling Platform
IMP::isd::FretRestraint Member List

This is the complete list of members for IMP::isd::FretRestraint, including all inherited members.

clear_caches()IMP::Objectvirtual
create_current_decomposition() const IMP::Restraint
create_decomposition() const IMP::Restraint
create_scoring_function(double weight=1.0, double max=NO_MAX) const IMP::Restraintvirtual
do_add_score_and_derivatives(ScoreAccumulator sa) const (defined in IMP::Restraint)IMP::Restraintprotectedvirtual
do_add_score_and_derivatives_moved(ScoreAccumulator sa, const ParticleIndexes &moved_pis, const ParticleIndexes &reset_pis) const (defined in IMP::Restraint)IMP::Restraintprotectedvirtual
do_create_current_decomposition() const IMP::Restraintprotectedvirtual
do_create_decomposition() const IMP::Restraintprotectedvirtual
do_destroy()IMP::Objectprotectedvirtual
do_get_inputs() const overrideIMP::isd::FretRestraintvirtual
do_get_interactions() const IMP::ModelObjectprotectedvirtual
do_get_outputs() const overrideIMP::Restraintprotectedvirtual
FretRestraint(Particles pd, Particles pa, Particle *kda, Particle *Ida, Particle *R0, Particle *sigma0, Particle *Pbl, double fexp, double m_d=1.0, double m_a=1.0)IMP::isd::FretRestraint
FretRestraint(Particle *kda, Particle *Ida, Particle *sumFi, Particle *sigma0, Particle *Pbl, double fexp) (defined in IMP::isd::FretRestraint)IMP::isd::FretRestraint
FretRestraint(Particle *prd, algebra::Vector3D GMMterd, algebra::Vector3Ds GMMctrd, Floats GMMwd, Floats GMMsigd, Particle *pra, algebra::Vector3D GMMtera, algebra::Vector3Ds GMMctra, Floats GMMwa, Floats GMMsiga, Particle *kda, Particle *Ida, Particle *sigma0, Particle *Pbl, FretData *data, double fexp) (defined in IMP::isd::FretRestraint)IMP::isd::FretRestraint
get_average_sigma(double fmod) const (defined in IMP::isd::FretRestraint)IMP::isd::FretRestraint
get_check_level() const (defined in IMP::Object)IMP::Object
get_dynamic_info() const IMP::Restraintvirtual
get_experimental_value() const (defined in IMP::isd::FretRestraint)IMP::isd::FretRestraint
get_has_dependencies() const IMP::ModelObject
get_has_required_score_states() const IMP::ModelObject
get_inputs() const IMP::ModelObject
get_interactions() const IMP::ModelObject
get_is_aggregate() const IMP::Restraint
get_last_last_score() const IMP::Restraint
get_last_score() const IMP::Restraintvirtual
get_log_level() const (defined in IMP::Object)IMP::Object
get_maximum_score() const (defined in IMP::Restraint)IMP::Restraint
get_model() const (defined in IMP::ModelObject)IMP::ModelObject
get_model_fretr() const (defined in IMP::isd::FretRestraint)IMP::isd::FretRestraint
get_name() const (defined in IMP::Object)IMP::Object
get_outputs() const IMP::ModelObject
get_probability() const (defined in IMP::isd::FretRestraint)IMP::isd::FretRestraint
get_required_score_states() const IMP::ModelObject
get_score() const IMP::Restraint
get_standard_error() const (defined in IMP::isd::FretRestraint)IMP::isd::FretRestraint
get_static_info() const IMP::Restraintvirtual
get_sumFi() const (defined in IMP::isd::FretRestraint)IMP::isd::FretRestraint
get_type_name() const override (defined in IMP::isd::FretRestraint)IMP::isd::FretRestraintvirtual
get_version_info() const overrideIMP::isd::FretRestraintvirtual
get_was_good() const IMP::Restraint
get_weight() const (defined in IMP::Restraint)IMP::Restraint
handle_set_has_required_score_states(bool)IMP::ModelObjectprotectedvirtual
is_aggregate_ (defined in IMP::Restraint)IMP::Restraintprotected
ModelObject(Model *m, std::string name) (defined in IMP::ModelObject)IMP::ModelObject
NonCopyable() (defined in IMP::NonCopyable)IMP::NonCopyableprotected
Object(std::string name)IMP::Objectprotected
Restraint(Model *m, std::string name)IMP::Restraint
set_check_level(CheckLevel l)IMP::Object
set_experimental_value(double fexp) (defined in IMP::isd::FretRestraint)IMP::isd::FretRestraint
set_has_dependencies(bool tf)IMP::ModelObject
set_has_required_score_states(bool tf)IMP::ModelObject
set_log_level(LogLevel l)IMP::Object
set_maximum_score(double s) (defined in IMP::Restraint)IMP::Restraint
set_name(std::string name) (defined in IMP::Object)IMP::Object
set_was_used(bool tf) const IMP::Object
set_weight(Float weight) (defined in IMP::Restraint)IMP::Restraint
show(std::ostream &out=std::cout) const (defined in IMP::Object)IMP::Object
unprotected_evaluate(IMP::DerivativeAccumulator *accum) const overrideIMP::isd::FretRestraintvirtual
unprotected_evaluate_if_below(DerivativeAccumulator *da, double max) const IMP::Restraintvirtual
unprotected_evaluate_if_good(DerivativeAccumulator *da, double max) const IMP::Restraintvirtual
unprotected_evaluate_moved(DerivativeAccumulator *da, const ParticleIndexes &moved_pis, const ParticleIndexes &reset_pis) const IMP::Restraintvirtual
unprotected_evaluate_moved_if_below(DerivativeAccumulator *da, const ParticleIndexes &moved_pis, const ParticleIndexes &reset_pis, double max) const (defined in IMP::Restraint)IMP::Restraintvirtual
unprotected_evaluate_moved_if_good(DerivativeAccumulator *da, const ParticleIndexes &moved_pis, const ParticleIndexes &reset_pis, double max) const (defined in IMP::Restraint)IMP::Restraintvirtual
~FretRestraint() (defined in IMP::isd::FretRestraint)IMP::isd::FretRestraintprotectedvirtual
~ModelObject() (defined in IMP::ModelObject)IMP::ModelObject
~Object() (defined in IMP::Object)IMP::Objectvirtual