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IMP Reference Guide  2.17.0
The Integrative Modeling Platform
version 2.17.0
example/__init__.py
1 # This file was automatically generated by SWIG (http://www.swig.org).
2 # Version 3.0.7
3 #
4 # Do not make changes to this file unless you know what you are doing--modify
5 # the SWIG interface file instead.
6 
7 
8 # This wrapper is part of IMP,
9 # Copyright 2007-2022 IMP Inventors. All rights reserved.
10 
11 from __future__ import print_function, division, absolute_import
12 
13 
14 
15 
16 
17 from sys import version_info
18 if version_info >= (2, 6, 0):
19  def swig_import_helper():
20  from os.path import dirname
21  import imp
22  fp = None
23  try:
24  fp, pathname, description = imp.find_module('_IMP_example', [dirname(__file__)])
25  except ImportError:
26  import _IMP_example
27  return _IMP_example
28  if fp is not None:
29  try:
30  _mod = imp.load_module('_IMP_example', fp, pathname, description)
31  finally:
32  fp.close()
33  return _mod
34  _IMP_example = swig_import_helper()
35  del swig_import_helper
36 else:
37  import _IMP_example
38 del version_info
39 try:
40  _swig_property = property
41 except NameError:
42  pass # Python < 2.2 doesn't have 'property'.
43 
44 
45 def _swig_setattr_nondynamic(self, class_type, name, value, static=1):
46  if (name == "thisown"):
47  return self.this.own(value)
48  if (name == "this"):
49  if type(value).__name__ == 'SwigPyObject':
50  self.__dict__[name] = value
51  return
52  method = class_type.__swig_setmethods__.get(name, None)
53  if method:
54  return method(self, value)
55  if (not static):
56  object.__setattr__(self, name, value)
57  else:
58  raise AttributeError("You cannot add attributes to %s" % self)
59 
60 
61 def _swig_setattr(self, class_type, name, value):
62  return _swig_setattr_nondynamic(self, class_type, name, value, 0)
63 
64 
65 def _swig_getattr_nondynamic(self, class_type, name, static=1):
66  if (name == "thisown"):
67  return self.this.own()
68  method = class_type.__swig_getmethods__.get(name, None)
69  if method:
70  return method(self)
71  if (not static):
72  return object.__getattr__(self, name)
73  else:
74  raise AttributeError(name)
75 
76 def _swig_getattr(self, class_type, name):
77  return _swig_getattr_nondynamic(self, class_type, name, 0)
78 
79 
80 def _swig_repr(self):
81  try:
82  strthis = "proxy of " + self.this.__repr__()
83  except:
84  strthis = ""
85  return "<%s.%s; %s >" % (self.__class__.__module__, self.__class__.__name__, strthis,)
86 
87 try:
88  _object = object
89  _newclass = 1
90 except AttributeError:
91  class _object:
92  pass
93  _newclass = 0
94 
95 
96 
97 def _swig_setattr_nondynamic_method(set):
98  def set_attr(self, name, value):
99  if (name == "thisown"):
100  return self.this.own(value)
101  if hasattr(self, name) or (name == "this"):
102  set(self, name, value)
103  else:
104  raise AttributeError("You cannot add attributes to %s" % self)
105  return set_attr
106 
107 
108 try:
109  import weakref
110  weakref_proxy = weakref.proxy
111 except:
112  weakref_proxy = lambda x: x
113 
114 
115 class IMP_EXAMPLE_SwigPyIterator(object):
116  """Proxy of C++ swig::IMP_EXAMPLE_SwigPyIterator class"""
117  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
118 
119  def __init__(self, *args, **kwargs):
120  raise AttributeError("No constructor defined - class is abstract")
121  __repr__ = _swig_repr
122  __swig_destroy__ = _IMP_example.delete_IMP_EXAMPLE_SwigPyIterator
123  __del__ = lambda self: None
124 
125  def value(self):
126  """value(IMP_EXAMPLE_SwigPyIterator self) -> PyObject *"""
127  return _IMP_example.IMP_EXAMPLE_SwigPyIterator_value(self)
128 
129 
130  def incr(self, n=1):
131  """
132  incr(IMP_EXAMPLE_SwigPyIterator self, size_t n=1) -> IMP_EXAMPLE_SwigPyIterator
133  incr(IMP_EXAMPLE_SwigPyIterator self) -> IMP_EXAMPLE_SwigPyIterator
134  """
135  return _IMP_example.IMP_EXAMPLE_SwigPyIterator_incr(self, n)
136 
137 
138  def decr(self, n=1):
139  """
140  decr(IMP_EXAMPLE_SwigPyIterator self, size_t n=1) -> IMP_EXAMPLE_SwigPyIterator
141  decr(IMP_EXAMPLE_SwigPyIterator self) -> IMP_EXAMPLE_SwigPyIterator
142  """
143  return _IMP_example.IMP_EXAMPLE_SwigPyIterator_decr(self, n)
144 
145 
146  def distance(self, x):
147  """distance(IMP_EXAMPLE_SwigPyIterator self, IMP_EXAMPLE_SwigPyIterator x) -> ptrdiff_t"""
148  return _IMP_example.IMP_EXAMPLE_SwigPyIterator_distance(self, x)
149 
150 
151  def equal(self, x):
152  """equal(IMP_EXAMPLE_SwigPyIterator self, IMP_EXAMPLE_SwigPyIterator x) -> bool"""
153  return _IMP_example.IMP_EXAMPLE_SwigPyIterator_equal(self, x)
154 
155 
156  def copy(self):
157  """copy(IMP_EXAMPLE_SwigPyIterator self) -> IMP_EXAMPLE_SwigPyIterator"""
158  return _IMP_example.IMP_EXAMPLE_SwigPyIterator_copy(self)
159 
160 
161  def next(self):
162  """next(IMP_EXAMPLE_SwigPyIterator self) -> PyObject *"""
163  return _IMP_example.IMP_EXAMPLE_SwigPyIterator_next(self)
164 
165 
166  def __next__(self):
167  """__next__(IMP_EXAMPLE_SwigPyIterator self) -> PyObject *"""
168  return _IMP_example.IMP_EXAMPLE_SwigPyIterator___next__(self)
169 
170 
171  def previous(self):
172  """previous(IMP_EXAMPLE_SwigPyIterator self) -> PyObject *"""
173  return _IMP_example.IMP_EXAMPLE_SwigPyIterator_previous(self)
174 
175 
176  def advance(self, n):
177  """advance(IMP_EXAMPLE_SwigPyIterator self, ptrdiff_t n) -> IMP_EXAMPLE_SwigPyIterator"""
178  return _IMP_example.IMP_EXAMPLE_SwigPyIterator_advance(self, n)
179 
180 
181  def __eq__(self, x):
182  """__eq__(IMP_EXAMPLE_SwigPyIterator self, IMP_EXAMPLE_SwigPyIterator x) -> bool"""
183  return _IMP_example.IMP_EXAMPLE_SwigPyIterator___eq__(self, x)
184 
185 
186  def __ne__(self, x):
187  """__ne__(IMP_EXAMPLE_SwigPyIterator self, IMP_EXAMPLE_SwigPyIterator x) -> bool"""
188  return _IMP_example.IMP_EXAMPLE_SwigPyIterator___ne__(self, x)
189 
190 
191  def __iadd__(self, n):
192  """__iadd__(IMP_EXAMPLE_SwigPyIterator self, ptrdiff_t n) -> IMP_EXAMPLE_SwigPyIterator"""
193  return _IMP_example.IMP_EXAMPLE_SwigPyIterator___iadd__(self, n)
194 
195 
196  def __isub__(self, n):
197  """__isub__(IMP_EXAMPLE_SwigPyIterator self, ptrdiff_t n) -> IMP_EXAMPLE_SwigPyIterator"""
198  return _IMP_example.IMP_EXAMPLE_SwigPyIterator___isub__(self, n)
199 
200 
201  def __add__(self, n):
202  """__add__(IMP_EXAMPLE_SwigPyIterator self, ptrdiff_t n) -> IMP_EXAMPLE_SwigPyIterator"""
203  return _IMP_example.IMP_EXAMPLE_SwigPyIterator___add__(self, n)
204 
205 
206  def __sub__(self, *args):
207  """
208  __sub__(IMP_EXAMPLE_SwigPyIterator self, ptrdiff_t n) -> IMP_EXAMPLE_SwigPyIterator
209  __sub__(IMP_EXAMPLE_SwigPyIterator self, IMP_EXAMPLE_SwigPyIterator x) -> ptrdiff_t
210  """
211  return _IMP_example.IMP_EXAMPLE_SwigPyIterator___sub__(self, *args)
212 
213  def __iter__(self):
214  return self
215 IMP_EXAMPLE_SwigPyIterator_swigregister = _IMP_example.IMP_EXAMPLE_SwigPyIterator_swigregister
216 IMP_EXAMPLE_SwigPyIterator_swigregister(IMP_EXAMPLE_SwigPyIterator)
217 
218 
219 _value_types=[]
220 _object_types=[]
221 _raii_types=[]
222 _plural_types=[]
223 
224 
225 _IMP_example.IMP_DEBUG_swigconstant(_IMP_example)
226 IMP_DEBUG = _IMP_example.IMP_DEBUG
227 
228 _IMP_example.IMP_RELEASE_swigconstant(_IMP_example)
229 IMP_RELEASE = _IMP_example.IMP_RELEASE
230 
231 _IMP_example.IMP_SILENT_swigconstant(_IMP_example)
232 IMP_SILENT = _IMP_example.IMP_SILENT
233 
234 _IMP_example.IMP_PROGRESS_swigconstant(_IMP_example)
235 IMP_PROGRESS = _IMP_example.IMP_PROGRESS
236 
237 _IMP_example.IMP_TERSE_swigconstant(_IMP_example)
238 IMP_TERSE = _IMP_example.IMP_TERSE
239 
240 _IMP_example.IMP_VERBOSE_swigconstant(_IMP_example)
241 IMP_VERBOSE = _IMP_example.IMP_VERBOSE
242 
243 _IMP_example.IMP_MEMORY_swigconstant(_IMP_example)
244 IMP_MEMORY = _IMP_example.IMP_MEMORY
245 
246 _IMP_example.IMP_NONE_swigconstant(_IMP_example)
247 IMP_NONE = _IMP_example.IMP_NONE
248 
249 _IMP_example.IMP_USAGE_swigconstant(_IMP_example)
250 IMP_USAGE = _IMP_example.IMP_USAGE
251 
252 _IMP_example.IMP_INTERNAL_swigconstant(_IMP_example)
253 IMP_INTERNAL = _IMP_example.IMP_INTERNAL
254 
255 _IMP_example.IMP_KERNEL_HAS_LOG4CXX_swigconstant(_IMP_example)
256 IMP_KERNEL_HAS_LOG4CXX = _IMP_example.IMP_KERNEL_HAS_LOG4CXX
257 
258 _IMP_example.IMP_COMPILER_HAS_DEBUG_VECTOR_swigconstant(_IMP_example)
259 IMP_COMPILER_HAS_DEBUG_VECTOR = _IMP_example.IMP_COMPILER_HAS_DEBUG_VECTOR
260 
261 _IMP_example.IMP_COMPILER_HAS_RANDOM_SHUFFLE_swigconstant(_IMP_example)
262 IMP_COMPILER_HAS_RANDOM_SHUFFLE = _IMP_example.IMP_COMPILER_HAS_RANDOM_SHUFFLE
263 
264 _IMP_example.IMP_COMPILER_HAS_THREE_WAY_swigconstant(_IMP_example)
265 IMP_COMPILER_HAS_THREE_WAY = _IMP_example.IMP_COMPILER_HAS_THREE_WAY
266 
267 _IMP_example.IMP_KERNEL_HAS_BOOST_RANDOM_swigconstant(_IMP_example)
268 IMP_KERNEL_HAS_BOOST_RANDOM = _IMP_example.IMP_KERNEL_HAS_BOOST_RANDOM
269 
270 _IMP_example.IMP_KERNEL_HAS_NUMPY_swigconstant(_IMP_example)
271 IMP_KERNEL_HAS_NUMPY = _IMP_example.IMP_KERNEL_HAS_NUMPY
272 
273 _IMP_example.IMP_KERNEL_HAS_GPERFTOOLS_swigconstant(_IMP_example)
274 IMP_KERNEL_HAS_GPERFTOOLS = _IMP_example.IMP_KERNEL_HAS_GPERFTOOLS
275 
276 _IMP_example.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER_swigconstant(_IMP_example)
277 IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER = _IMP_example.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER
278 
279 _IMP_example.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER_swigconstant(_IMP_example)
280 IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER = _IMP_example.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER
281 
282 _IMP_example.IMPKERNEL_SHOW_WARNINGS_swigconstant(_IMP_example)
283 IMPKERNEL_SHOW_WARNINGS = _IMP_example.IMPKERNEL_SHOW_WARNINGS
284 
285 import sys
286 class _DirectorObjects(object):
287  """@internal Simple class to keep references to director objects
288  to prevent premature deletion."""
289  def __init__(self):
290  self._objects = []
291  def register(self, obj):
292  """Take a reference to a director object; will only work for
293  refcounted C++ classes"""
294  if hasattr(obj, 'get_ref_count'):
295  self._objects.append(obj)
296  def cleanup(self):
297  """Only drop our reference and allow cleanup by Python if no other
298  Python references exist (we hold 3 references: one in self._objects,
299  one in x, and one in the argument list for getrefcount) *and* no
300  other C++ references exist (the Python object always holds one)"""
301  objs = [x for x in self._objects if sys.getrefcount(x) > 3 \
302  or x.get_ref_count() > 1]
303 # Do in two steps so the references are kept until the end of the
304 # function (deleting references may trigger a fresh call to this method)
305  self._objects = objs
306  def get_object_count(self):
307  """Get number of director objects (useful for testing only)"""
308  return len(self._objects)
309 _director_objects = _DirectorObjects()
310 
311 class _ostream(object):
312  """Proxy of C++ std::ostream class"""
313  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
314 
315  def __init__(self, *args, **kwargs):
316  raise AttributeError("No constructor defined")
317  __repr__ = _swig_repr
318 
319  def write(self, osa_buf):
320  """write(_ostream self, char const * osa_buf)"""
321  return _IMP_example._ostream_write(self, osa_buf)
322 
323 _ostream_swigregister = _IMP_example._ostream_swigregister
324 _ostream_swigregister(_ostream)
325 
326 
327 _IMP_example.IMP_HAS_NOEXCEPT_swigconstant(_IMP_example)
328 IMP_HAS_NOEXCEPT = _IMP_example.IMP_HAS_NOEXCEPT
329 
330 _IMP_example.IMP_C_OPEN_BINARY_swigconstant(_IMP_example)
331 IMP_C_OPEN_BINARY = _IMP_example.IMP_C_OPEN_BINARY
332 import IMP
333 
334 _IMP_example.IMP_CGAL_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_example)
335 IMP_CGAL_HAS_BOOST_FILESYSTEM = _IMP_example.IMP_CGAL_HAS_BOOST_FILESYSTEM
336 
337 _IMP_example.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_example)
338 IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS = _IMP_example.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS
339 
340 _IMP_example.IMP_CGAL_HAS_BOOST_RANDOM_swigconstant(_IMP_example)
341 IMP_CGAL_HAS_BOOST_RANDOM = _IMP_example.IMP_CGAL_HAS_BOOST_RANDOM
342 
343 _IMP_example.IMP_CGAL_HAS_BOOST_SYSTEM_swigconstant(_IMP_example)
344 IMP_CGAL_HAS_BOOST_SYSTEM = _IMP_example.IMP_CGAL_HAS_BOOST_SYSTEM
345 
346 _IMP_example.IMP_CGAL_HAS_NUMPY_swigconstant(_IMP_example)
347 IMP_CGAL_HAS_NUMPY = _IMP_example.IMP_CGAL_HAS_NUMPY
348 
349 _IMP_example.IMPCGAL_SHOW_WARNINGS_swigconstant(_IMP_example)
350 IMPCGAL_SHOW_WARNINGS = _IMP_example.IMPCGAL_SHOW_WARNINGS
351 import IMP.cgal
352 
353 _IMP_example.IMP_ALGEBRA_HAS_IMP_CGAL_swigconstant(_IMP_example)
354 IMP_ALGEBRA_HAS_IMP_CGAL = _IMP_example.IMP_ALGEBRA_HAS_IMP_CGAL
355 
356 _IMP_example.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_example)
357 IMP_ALGEBRA_HAS_BOOST_FILESYSTEM = _IMP_example.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM
358 
359 _IMP_example.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_example)
360 IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS = _IMP_example.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS
361 
362 _IMP_example.IMP_ALGEBRA_HAS_BOOST_RANDOM_swigconstant(_IMP_example)
363 IMP_ALGEBRA_HAS_BOOST_RANDOM = _IMP_example.IMP_ALGEBRA_HAS_BOOST_RANDOM
364 
365 _IMP_example.IMP_ALGEBRA_HAS_BOOST_SYSTEM_swigconstant(_IMP_example)
366 IMP_ALGEBRA_HAS_BOOST_SYSTEM = _IMP_example.IMP_ALGEBRA_HAS_BOOST_SYSTEM
367 
368 _IMP_example.IMP_ALGEBRA_HAS_CGAL_swigconstant(_IMP_example)
369 IMP_ALGEBRA_HAS_CGAL = _IMP_example.IMP_ALGEBRA_HAS_CGAL
370 
371 _IMP_example.IMP_ALGEBRA_HAS_NUMPY_swigconstant(_IMP_example)
372 IMP_ALGEBRA_HAS_NUMPY = _IMP_example.IMP_ALGEBRA_HAS_NUMPY
373 
374 _IMP_example.IMP_ALGEBRA_HAS_ANN_swigconstant(_IMP_example)
375 IMP_ALGEBRA_HAS_ANN = _IMP_example.IMP_ALGEBRA_HAS_ANN
376 
377 _IMP_example.IMPALGEBRA_SHOW_WARNINGS_swigconstant(_IMP_example)
378 IMPALGEBRA_SHOW_WARNINGS = _IMP_example.IMPALGEBRA_SHOW_WARNINGS
379 import IMP.algebra
380 
381 _IMP_example.IMP_DISPLAY_HAS_IMP_CGAL_swigconstant(_IMP_example)
382 IMP_DISPLAY_HAS_IMP_CGAL = _IMP_example.IMP_DISPLAY_HAS_IMP_CGAL
383 
384 _IMP_example.IMP_DISPLAY_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_example)
385 IMP_DISPLAY_HAS_BOOST_FILESYSTEM = _IMP_example.IMP_DISPLAY_HAS_BOOST_FILESYSTEM
386 
387 _IMP_example.IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_example)
388 IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS = _IMP_example.IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS
389 
390 _IMP_example.IMP_DISPLAY_HAS_BOOST_RANDOM_swigconstant(_IMP_example)
391 IMP_DISPLAY_HAS_BOOST_RANDOM = _IMP_example.IMP_DISPLAY_HAS_BOOST_RANDOM
392 
393 _IMP_example.IMP_DISPLAY_HAS_BOOST_SYSTEM_swigconstant(_IMP_example)
394 IMP_DISPLAY_HAS_BOOST_SYSTEM = _IMP_example.IMP_DISPLAY_HAS_BOOST_SYSTEM
395 
396 _IMP_example.IMP_DISPLAY_HAS_CGAL_swigconstant(_IMP_example)
397 IMP_DISPLAY_HAS_CGAL = _IMP_example.IMP_DISPLAY_HAS_CGAL
398 
399 _IMP_example.IMP_DISPLAY_HAS_NUMPY_swigconstant(_IMP_example)
400 IMP_DISPLAY_HAS_NUMPY = _IMP_example.IMP_DISPLAY_HAS_NUMPY
401 
402 _IMP_example.IMPDISPLAY_SHOW_WARNINGS_swigconstant(_IMP_example)
403 IMPDISPLAY_SHOW_WARNINGS = _IMP_example.IMPDISPLAY_SHOW_WARNINGS
404 import IMP.display
405 
406 _IMP_example.IMP_SCORE_FUNCTOR_HAS_IMP_CGAL_swigconstant(_IMP_example)
407 IMP_SCORE_FUNCTOR_HAS_IMP_CGAL = _IMP_example.IMP_SCORE_FUNCTOR_HAS_IMP_CGAL
408 
409 _IMP_example.IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_example)
410 IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM = _IMP_example.IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM
411 
412 _IMP_example.IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_example)
413 IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS = _IMP_example.IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS
414 
415 _IMP_example.IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM_swigconstant(_IMP_example)
416 IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM = _IMP_example.IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM
417 
418 _IMP_example.IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM_swigconstant(_IMP_example)
419 IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM = _IMP_example.IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM
420 
421 _IMP_example.IMP_SCORE_FUNCTOR_HAS_CGAL_swigconstant(_IMP_example)
422 IMP_SCORE_FUNCTOR_HAS_CGAL = _IMP_example.IMP_SCORE_FUNCTOR_HAS_CGAL
423 
424 _IMP_example.IMP_SCORE_FUNCTOR_HAS_HDF5_swigconstant(_IMP_example)
425 IMP_SCORE_FUNCTOR_HAS_HDF5 = _IMP_example.IMP_SCORE_FUNCTOR_HAS_HDF5
426 
427 _IMP_example.IMP_SCORE_FUNCTOR_HAS_NUMPY_swigconstant(_IMP_example)
428 IMP_SCORE_FUNCTOR_HAS_NUMPY = _IMP_example.IMP_SCORE_FUNCTOR_HAS_NUMPY
429 
430 _IMP_example.IMPSCOREFUNCTOR_SHOW_WARNINGS_swigconstant(_IMP_example)
431 IMPSCOREFUNCTOR_SHOW_WARNINGS = _IMP_example.IMPSCOREFUNCTOR_SHOW_WARNINGS
432 import IMP.score_functor
433 
434 _IMP_example.IMP_STATISTICS_HAS_IMP_CGAL_swigconstant(_IMP_example)
435 IMP_STATISTICS_HAS_IMP_CGAL = _IMP_example.IMP_STATISTICS_HAS_IMP_CGAL
436 
437 _IMP_example.IMP_STATISTICS_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_example)
438 IMP_STATISTICS_HAS_BOOST_FILESYSTEM = _IMP_example.IMP_STATISTICS_HAS_BOOST_FILESYSTEM
439 
440 _IMP_example.IMP_STATISTICS_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_example)
441 IMP_STATISTICS_HAS_BOOST_PROGRAMOPTIONS = _IMP_example.IMP_STATISTICS_HAS_BOOST_PROGRAMOPTIONS
442 
443 _IMP_example.IMP_STATISTICS_HAS_BOOST_RANDOM_swigconstant(_IMP_example)
444 IMP_STATISTICS_HAS_BOOST_RANDOM = _IMP_example.IMP_STATISTICS_HAS_BOOST_RANDOM
445 
446 _IMP_example.IMP_STATISTICS_HAS_BOOST_SYSTEM_swigconstant(_IMP_example)
447 IMP_STATISTICS_HAS_BOOST_SYSTEM = _IMP_example.IMP_STATISTICS_HAS_BOOST_SYSTEM
448 
449 _IMP_example.IMP_STATISTICS_HAS_CGAL_swigconstant(_IMP_example)
450 IMP_STATISTICS_HAS_CGAL = _IMP_example.IMP_STATISTICS_HAS_CGAL
451 
452 _IMP_example.IMP_STATISTICS_HAS_NUMPY_swigconstant(_IMP_example)
453 IMP_STATISTICS_HAS_NUMPY = _IMP_example.IMP_STATISTICS_HAS_NUMPY
454 
455 _IMP_example.IMPSTATISTICS_SHOW_WARNINGS_swigconstant(_IMP_example)
456 IMPSTATISTICS_SHOW_WARNINGS = _IMP_example.IMPSTATISTICS_SHOW_WARNINGS
457 import IMP.statistics
458 
459 _IMP_example.IMP_CORE_HAS_IMP_CGAL_swigconstant(_IMP_example)
460 IMP_CORE_HAS_IMP_CGAL = _IMP_example.IMP_CORE_HAS_IMP_CGAL
461 
462 _IMP_example.IMP_CORE_HAS_IMP_KERNEL_swigconstant(_IMP_example)
463 IMP_CORE_HAS_IMP_KERNEL = _IMP_example.IMP_CORE_HAS_IMP_KERNEL
464 
465 _IMP_example.IMP_CORE_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_example)
466 IMP_CORE_HAS_BOOST_FILESYSTEM = _IMP_example.IMP_CORE_HAS_BOOST_FILESYSTEM
467 
468 _IMP_example.IMP_CORE_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_example)
469 IMP_CORE_HAS_BOOST_PROGRAMOPTIONS = _IMP_example.IMP_CORE_HAS_BOOST_PROGRAMOPTIONS
470 
471 _IMP_example.IMP_CORE_HAS_BOOST_RANDOM_swigconstant(_IMP_example)
472 IMP_CORE_HAS_BOOST_RANDOM = _IMP_example.IMP_CORE_HAS_BOOST_RANDOM
473 
474 _IMP_example.IMP_CORE_HAS_BOOST_SYSTEM_swigconstant(_IMP_example)
475 IMP_CORE_HAS_BOOST_SYSTEM = _IMP_example.IMP_CORE_HAS_BOOST_SYSTEM
476 
477 _IMP_example.IMP_CORE_HAS_CGAL_swigconstant(_IMP_example)
478 IMP_CORE_HAS_CGAL = _IMP_example.IMP_CORE_HAS_CGAL
479 
480 _IMP_example.IMP_CORE_HAS_HDF5_swigconstant(_IMP_example)
481 IMP_CORE_HAS_HDF5 = _IMP_example.IMP_CORE_HAS_HDF5
482 
483 _IMP_example.IMP_CORE_HAS_NUMPY_swigconstant(_IMP_example)
484 IMP_CORE_HAS_NUMPY = _IMP_example.IMP_CORE_HAS_NUMPY
485 
486 _IMP_example.IMPCORE_SHOW_WARNINGS_swigconstant(_IMP_example)
487 IMPCORE_SHOW_WARNINGS = _IMP_example.IMPCORE_SHOW_WARNINGS
488 import IMP.core
489 
490 _IMP_example.IMP_CONTAINER_HAS_IMP_ALGEBRA_swigconstant(_IMP_example)
491 IMP_CONTAINER_HAS_IMP_ALGEBRA = _IMP_example.IMP_CONTAINER_HAS_IMP_ALGEBRA
492 
493 _IMP_example.IMP_CONTAINER_HAS_IMP_CGAL_swigconstant(_IMP_example)
494 IMP_CONTAINER_HAS_IMP_CGAL = _IMP_example.IMP_CONTAINER_HAS_IMP_CGAL
495 
496 _IMP_example.IMP_CONTAINER_HAS_IMP_DISPLAY_swigconstant(_IMP_example)
497 IMP_CONTAINER_HAS_IMP_DISPLAY = _IMP_example.IMP_CONTAINER_HAS_IMP_DISPLAY
498 
499 _IMP_example.IMP_CONTAINER_HAS_IMP_KERNEL_swigconstant(_IMP_example)
500 IMP_CONTAINER_HAS_IMP_KERNEL = _IMP_example.IMP_CONTAINER_HAS_IMP_KERNEL
501 
502 _IMP_example.IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_example)
503 IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR = _IMP_example.IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR
504 
505 _IMP_example.IMP_CONTAINER_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_example)
506 IMP_CONTAINER_HAS_BOOST_FILESYSTEM = _IMP_example.IMP_CONTAINER_HAS_BOOST_FILESYSTEM
507 
508 _IMP_example.IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_example)
509 IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS = _IMP_example.IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS
510 
511 _IMP_example.IMP_CONTAINER_HAS_BOOST_RANDOM_swigconstant(_IMP_example)
512 IMP_CONTAINER_HAS_BOOST_RANDOM = _IMP_example.IMP_CONTAINER_HAS_BOOST_RANDOM
513 
514 _IMP_example.IMP_CONTAINER_HAS_BOOST_SYSTEM_swigconstant(_IMP_example)
515 IMP_CONTAINER_HAS_BOOST_SYSTEM = _IMP_example.IMP_CONTAINER_HAS_BOOST_SYSTEM
516 
517 _IMP_example.IMP_CONTAINER_HAS_CGAL_swigconstant(_IMP_example)
518 IMP_CONTAINER_HAS_CGAL = _IMP_example.IMP_CONTAINER_HAS_CGAL
519 
520 _IMP_example.IMP_CONTAINER_HAS_HDF5_swigconstant(_IMP_example)
521 IMP_CONTAINER_HAS_HDF5 = _IMP_example.IMP_CONTAINER_HAS_HDF5
522 
523 _IMP_example.IMP_CONTAINER_HAS_NUMPY_swigconstant(_IMP_example)
524 IMP_CONTAINER_HAS_NUMPY = _IMP_example.IMP_CONTAINER_HAS_NUMPY
525 
526 _IMP_example.IMP_CONTAINER_HAS_PYTHON_IHM_swigconstant(_IMP_example)
527 IMP_CONTAINER_HAS_PYTHON_IHM = _IMP_example.IMP_CONTAINER_HAS_PYTHON_IHM
528 
529 _IMP_example.IMP_CONTAINER_HAS_GOOGLE_DENSE_HASH_MAP_swigconstant(_IMP_example)
530 IMP_CONTAINER_HAS_GOOGLE_DENSE_HASH_MAP = _IMP_example.IMP_CONTAINER_HAS_GOOGLE_DENSE_HASH_MAP
531 
532 _IMP_example.IMP_CONTAINER_HAS_ROBIN_MAP_swigconstant(_IMP_example)
533 IMP_CONTAINER_HAS_ROBIN_MAP = _IMP_example.IMP_CONTAINER_HAS_ROBIN_MAP
534 
535 _IMP_example.IMPCONTAINER_SHOW_WARNINGS_swigconstant(_IMP_example)
536 IMPCONTAINER_SHOW_WARNINGS = _IMP_example.IMPCONTAINER_SHOW_WARNINGS
537 import IMP.container
538 
539 _IMP_example.IMP_ATOM_HAS_IMP_CGAL_swigconstant(_IMP_example)
540 IMP_ATOM_HAS_IMP_CGAL = _IMP_example.IMP_ATOM_HAS_IMP_CGAL
541 
542 _IMP_example.IMP_ATOM_HAS_IMP_KERNEL_swigconstant(_IMP_example)
543 IMP_ATOM_HAS_IMP_KERNEL = _IMP_example.IMP_ATOM_HAS_IMP_KERNEL
544 
545 _IMP_example.IMP_ATOM_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_example)
546 IMP_ATOM_HAS_IMP_SCORE_FUNCTOR = _IMP_example.IMP_ATOM_HAS_IMP_SCORE_FUNCTOR
547 
548 _IMP_example.IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_example)
549 IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS = _IMP_example.IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS
550 
551 _IMP_example.IMP_ATOM_HAS_BOOST_RANDOM_swigconstant(_IMP_example)
552 IMP_ATOM_HAS_BOOST_RANDOM = _IMP_example.IMP_ATOM_HAS_BOOST_RANDOM
553 
554 _IMP_example.IMP_ATOM_HAS_BOOST_REGEX_swigconstant(_IMP_example)
555 IMP_ATOM_HAS_BOOST_REGEX = _IMP_example.IMP_ATOM_HAS_BOOST_REGEX
556 
557 _IMP_example.IMP_ATOM_HAS_BOOST_SYSTEM_swigconstant(_IMP_example)
558 IMP_ATOM_HAS_BOOST_SYSTEM = _IMP_example.IMP_ATOM_HAS_BOOST_SYSTEM
559 
560 _IMP_example.IMP_ATOM_HAS_CGAL_swigconstant(_IMP_example)
561 IMP_ATOM_HAS_CGAL = _IMP_example.IMP_ATOM_HAS_CGAL
562 
563 _IMP_example.IMP_ATOM_HAS_HDF5_swigconstant(_IMP_example)
564 IMP_ATOM_HAS_HDF5 = _IMP_example.IMP_ATOM_HAS_HDF5
565 
566 _IMP_example.IMP_ATOM_HAS_NUMPY_swigconstant(_IMP_example)
567 IMP_ATOM_HAS_NUMPY = _IMP_example.IMP_ATOM_HAS_NUMPY
568 
569 _IMP_example.IMP_ATOM_HAS_PYTHON_IHM_swigconstant(_IMP_example)
570 IMP_ATOM_HAS_PYTHON_IHM = _IMP_example.IMP_ATOM_HAS_PYTHON_IHM
571 
572 _IMP_example.IMPATOM_SHOW_WARNINGS_swigconstant(_IMP_example)
573 IMPATOM_SHOW_WARNINGS = _IMP_example.IMPATOM_SHOW_WARNINGS
574 
575 _IMP_example.IMP_ATOM_TYPE_INDEX_swigconstant(_IMP_example)
576 IMP_ATOM_TYPE_INDEX = _IMP_example.IMP_ATOM_TYPE_INDEX
577 
578 _IMP_example.IMP_RESIDUE_TYPE_INDEX_swigconstant(_IMP_example)
579 IMP_RESIDUE_TYPE_INDEX = _IMP_example.IMP_RESIDUE_TYPE_INDEX
580 
581 _IMP_example.IMP_HIERARCHY_TYPE_INDEX_swigconstant(_IMP_example)
582 IMP_HIERARCHY_TYPE_INDEX = _IMP_example.IMP_HIERARCHY_TYPE_INDEX
583 
584 _IMP_example.IMP_CHAIN_TYPE_INDEX_swigconstant(_IMP_example)
585 IMP_CHAIN_TYPE_INDEX = _IMP_example.IMP_CHAIN_TYPE_INDEX
586 import IMP.atom
587 
588 _IMP_example.IMP_EM_HAS_IMP_CGAL_swigconstant(_IMP_example)
589 IMP_EM_HAS_IMP_CGAL = _IMP_example.IMP_EM_HAS_IMP_CGAL
590 
591 _IMP_example.IMP_EM_HAS_IMP_CONTAINER_swigconstant(_IMP_example)
592 IMP_EM_HAS_IMP_CONTAINER = _IMP_example.IMP_EM_HAS_IMP_CONTAINER
593 
594 _IMP_example.IMP_EM_HAS_IMP_DISPLAY_swigconstant(_IMP_example)
595 IMP_EM_HAS_IMP_DISPLAY = _IMP_example.IMP_EM_HAS_IMP_DISPLAY
596 
597 _IMP_example.IMP_EM_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_example)
598 IMP_EM_HAS_IMP_SCORE_FUNCTOR = _IMP_example.IMP_EM_HAS_IMP_SCORE_FUNCTOR
599 
600 _IMP_example.IMP_EM_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_example)
601 IMP_EM_HAS_BOOST_FILESYSTEM = _IMP_example.IMP_EM_HAS_BOOST_FILESYSTEM
602 
603 _IMP_example.IMP_EM_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_example)
604 IMP_EM_HAS_BOOST_PROGRAMOPTIONS = _IMP_example.IMP_EM_HAS_BOOST_PROGRAMOPTIONS
605 
606 _IMP_example.IMP_EM_HAS_BOOST_RANDOM_swigconstant(_IMP_example)
607 IMP_EM_HAS_BOOST_RANDOM = _IMP_example.IMP_EM_HAS_BOOST_RANDOM
608 
609 _IMP_example.IMP_EM_HAS_BOOST_REGEX_swigconstant(_IMP_example)
610 IMP_EM_HAS_BOOST_REGEX = _IMP_example.IMP_EM_HAS_BOOST_REGEX
611 
612 _IMP_example.IMP_EM_HAS_BOOST_SYSTEM_swigconstant(_IMP_example)
613 IMP_EM_HAS_BOOST_SYSTEM = _IMP_example.IMP_EM_HAS_BOOST_SYSTEM
614 
615 _IMP_example.IMP_EM_HAS_CGAL_swigconstant(_IMP_example)
616 IMP_EM_HAS_CGAL = _IMP_example.IMP_EM_HAS_CGAL
617 
618 _IMP_example.IMP_EM_HAS_HDF5_swigconstant(_IMP_example)
619 IMP_EM_HAS_HDF5 = _IMP_example.IMP_EM_HAS_HDF5
620 
621 _IMP_example.IMP_EM_HAS_NUMPY_swigconstant(_IMP_example)
622 IMP_EM_HAS_NUMPY = _IMP_example.IMP_EM_HAS_NUMPY
623 
624 _IMP_example.IMP_EM_HAS_PYTHON_IHM_swigconstant(_IMP_example)
625 IMP_EM_HAS_PYTHON_IHM = _IMP_example.IMP_EM_HAS_PYTHON_IHM
626 
627 _IMP_example.IMPEM_SHOW_WARNINGS_swigconstant(_IMP_example)
628 IMPEM_SHOW_WARNINGS = _IMP_example.IMPEM_SHOW_WARNINGS
629 import IMP.em
630 
631 _IMP_example.IMP_SAXS_HAS_IMP_CGAL_swigconstant(_IMP_example)
632 IMP_SAXS_HAS_IMP_CGAL = _IMP_example.IMP_SAXS_HAS_IMP_CGAL
633 
634 _IMP_example.IMP_SAXS_HAS_IMP_CONTAINER_swigconstant(_IMP_example)
635 IMP_SAXS_HAS_IMP_CONTAINER = _IMP_example.IMP_SAXS_HAS_IMP_CONTAINER
636 
637 _IMP_example.IMP_SAXS_HAS_IMP_DISPLAY_swigconstant(_IMP_example)
638 IMP_SAXS_HAS_IMP_DISPLAY = _IMP_example.IMP_SAXS_HAS_IMP_DISPLAY
639 
640 _IMP_example.IMP_SAXS_HAS_IMP_KERNEL_swigconstant(_IMP_example)
641 IMP_SAXS_HAS_IMP_KERNEL = _IMP_example.IMP_SAXS_HAS_IMP_KERNEL
642 
643 _IMP_example.IMP_SAXS_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_example)
644 IMP_SAXS_HAS_IMP_SCORE_FUNCTOR = _IMP_example.IMP_SAXS_HAS_IMP_SCORE_FUNCTOR
645 
646 _IMP_example.IMP_SAXS_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_example)
647 IMP_SAXS_HAS_BOOST_FILESYSTEM = _IMP_example.IMP_SAXS_HAS_BOOST_FILESYSTEM
648 
649 _IMP_example.IMP_SAXS_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_example)
650 IMP_SAXS_HAS_BOOST_PROGRAMOPTIONS = _IMP_example.IMP_SAXS_HAS_BOOST_PROGRAMOPTIONS
651 
652 _IMP_example.IMP_SAXS_HAS_BOOST_RANDOM_swigconstant(_IMP_example)
653 IMP_SAXS_HAS_BOOST_RANDOM = _IMP_example.IMP_SAXS_HAS_BOOST_RANDOM
654 
655 _IMP_example.IMP_SAXS_HAS_BOOST_REGEX_swigconstant(_IMP_example)
656 IMP_SAXS_HAS_BOOST_REGEX = _IMP_example.IMP_SAXS_HAS_BOOST_REGEX
657 
658 _IMP_example.IMP_SAXS_HAS_BOOST_SYSTEM_swigconstant(_IMP_example)
659 IMP_SAXS_HAS_BOOST_SYSTEM = _IMP_example.IMP_SAXS_HAS_BOOST_SYSTEM
660 
661 _IMP_example.IMP_SAXS_HAS_CGAL_swigconstant(_IMP_example)
662 IMP_SAXS_HAS_CGAL = _IMP_example.IMP_SAXS_HAS_CGAL
663 
664 _IMP_example.IMP_SAXS_HAS_HDF5_swigconstant(_IMP_example)
665 IMP_SAXS_HAS_HDF5 = _IMP_example.IMP_SAXS_HAS_HDF5
666 
667 _IMP_example.IMP_SAXS_HAS_NUMPY_swigconstant(_IMP_example)
668 IMP_SAXS_HAS_NUMPY = _IMP_example.IMP_SAXS_HAS_NUMPY
669 
670 _IMP_example.IMP_SAXS_HAS_PYTHON_IHM_swigconstant(_IMP_example)
671 IMP_SAXS_HAS_PYTHON_IHM = _IMP_example.IMP_SAXS_HAS_PYTHON_IHM
672 
673 _IMP_example.IMPSAXS_SHOW_WARNINGS_swigconstant(_IMP_example)
674 IMPSAXS_SHOW_WARNINGS = _IMP_example.IMPSAXS_SHOW_WARNINGS
675 import IMP.saxs
676 
677 _IMP_example.IMP_ISD_HAS_IMP_CGAL_swigconstant(_IMP_example)
678 IMP_ISD_HAS_IMP_CGAL = _IMP_example.IMP_ISD_HAS_IMP_CGAL
679 
680 _IMP_example.IMP_ISD_HAS_IMP_DISPLAY_swigconstant(_IMP_example)
681 IMP_ISD_HAS_IMP_DISPLAY = _IMP_example.IMP_ISD_HAS_IMP_DISPLAY
682 
683 _IMP_example.IMP_ISD_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_example)
684 IMP_ISD_HAS_IMP_SCORE_FUNCTOR = _IMP_example.IMP_ISD_HAS_IMP_SCORE_FUNCTOR
685 
686 _IMP_example.IMP_ISD_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_example)
687 IMP_ISD_HAS_BOOST_FILESYSTEM = _IMP_example.IMP_ISD_HAS_BOOST_FILESYSTEM
688 
689 _IMP_example.IMP_ISD_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_example)
690 IMP_ISD_HAS_BOOST_PROGRAMOPTIONS = _IMP_example.IMP_ISD_HAS_BOOST_PROGRAMOPTIONS
691 
692 _IMP_example.IMP_ISD_HAS_BOOST_RANDOM_swigconstant(_IMP_example)
693 IMP_ISD_HAS_BOOST_RANDOM = _IMP_example.IMP_ISD_HAS_BOOST_RANDOM
694 
695 _IMP_example.IMP_ISD_HAS_BOOST_REGEX_swigconstant(_IMP_example)
696 IMP_ISD_HAS_BOOST_REGEX = _IMP_example.IMP_ISD_HAS_BOOST_REGEX
697 
698 _IMP_example.IMP_ISD_HAS_BOOST_SYSTEM_swigconstant(_IMP_example)
699 IMP_ISD_HAS_BOOST_SYSTEM = _IMP_example.IMP_ISD_HAS_BOOST_SYSTEM
700 
701 _IMP_example.IMP_ISD_HAS_CGAL_swigconstant(_IMP_example)
702 IMP_ISD_HAS_CGAL = _IMP_example.IMP_ISD_HAS_CGAL
703 
704 _IMP_example.IMP_ISD_HAS_HDF5_swigconstant(_IMP_example)
705 IMP_ISD_HAS_HDF5 = _IMP_example.IMP_ISD_HAS_HDF5
706 
707 _IMP_example.IMP_ISD_HAS_NUMPY_swigconstant(_IMP_example)
708 IMP_ISD_HAS_NUMPY = _IMP_example.IMP_ISD_HAS_NUMPY
709 
710 _IMP_example.IMP_ISD_HAS_PYTHON_IHM_swigconstant(_IMP_example)
711 IMP_ISD_HAS_PYTHON_IHM = _IMP_example.IMP_ISD_HAS_PYTHON_IHM
712 
713 _IMP_example.IMPISD_SHOW_WARNINGS_swigconstant(_IMP_example)
714 IMPISD_SHOW_WARNINGS = _IMP_example.IMPISD_SHOW_WARNINGS
715 import IMP.isd
716 
717 _IMP_example.IMP_RMF_HAS_IMP_CGAL_swigconstant(_IMP_example)
718 IMP_RMF_HAS_IMP_CGAL = _IMP_example.IMP_RMF_HAS_IMP_CGAL
719 
720 _IMP_example.IMP_RMF_HAS_IMP_EM_swigconstant(_IMP_example)
721 IMP_RMF_HAS_IMP_EM = _IMP_example.IMP_RMF_HAS_IMP_EM
722 
723 _IMP_example.IMP_RMF_HAS_IMP_SAXS_swigconstant(_IMP_example)
724 IMP_RMF_HAS_IMP_SAXS = _IMP_example.IMP_RMF_HAS_IMP_SAXS
725 
726 _IMP_example.IMP_RMF_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_example)
727 IMP_RMF_HAS_IMP_SCORE_FUNCTOR = _IMP_example.IMP_RMF_HAS_IMP_SCORE_FUNCTOR
728 
729 _IMP_example.IMP_RMF_HAS_IMP_STATISTICS_swigconstant(_IMP_example)
730 IMP_RMF_HAS_IMP_STATISTICS = _IMP_example.IMP_RMF_HAS_IMP_STATISTICS
731 
732 _IMP_example.IMP_RMF_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_example)
733 IMP_RMF_HAS_BOOST_FILESYSTEM = _IMP_example.IMP_RMF_HAS_BOOST_FILESYSTEM
734 
735 _IMP_example.IMP_RMF_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_example)
736 IMP_RMF_HAS_BOOST_PROGRAMOPTIONS = _IMP_example.IMP_RMF_HAS_BOOST_PROGRAMOPTIONS
737 
738 _IMP_example.IMP_RMF_HAS_BOOST_RANDOM_swigconstant(_IMP_example)
739 IMP_RMF_HAS_BOOST_RANDOM = _IMP_example.IMP_RMF_HAS_BOOST_RANDOM
740 
741 _IMP_example.IMP_RMF_HAS_BOOST_REGEX_swigconstant(_IMP_example)
742 IMP_RMF_HAS_BOOST_REGEX = _IMP_example.IMP_RMF_HAS_BOOST_REGEX
743 
744 _IMP_example.IMP_RMF_HAS_BOOST_SYSTEM_swigconstant(_IMP_example)
745 IMP_RMF_HAS_BOOST_SYSTEM = _IMP_example.IMP_RMF_HAS_BOOST_SYSTEM
746 
747 _IMP_example.IMP_RMF_HAS_CGAL_swigconstant(_IMP_example)
748 IMP_RMF_HAS_CGAL = _IMP_example.IMP_RMF_HAS_CGAL
749 
750 _IMP_example.IMP_RMF_HAS_HDF5_swigconstant(_IMP_example)
751 IMP_RMF_HAS_HDF5 = _IMP_example.IMP_RMF_HAS_HDF5
752 
753 _IMP_example.IMP_RMF_HAS_NUMPY_swigconstant(_IMP_example)
754 IMP_RMF_HAS_NUMPY = _IMP_example.IMP_RMF_HAS_NUMPY
755 
756 _IMP_example.IMP_RMF_HAS_PYTHON_IHM_swigconstant(_IMP_example)
757 IMP_RMF_HAS_PYTHON_IHM = _IMP_example.IMP_RMF_HAS_PYTHON_IHM
758 
759 _IMP_example.IMPRMF_SHOW_WARNINGS_swigconstant(_IMP_example)
760 IMPRMF_SHOW_WARNINGS = _IMP_example.IMPRMF_SHOW_WARNINGS
761 import IMP.rmf
762 import RMF
763 
764 _IMP_example.IMP_DOMINO_HAS_IMP_ATOM_swigconstant(_IMP_example)
765 IMP_DOMINO_HAS_IMP_ATOM = _IMP_example.IMP_DOMINO_HAS_IMP_ATOM
766 
767 _IMP_example.IMP_DOMINO_HAS_IMP_CGAL_swigconstant(_IMP_example)
768 IMP_DOMINO_HAS_IMP_CGAL = _IMP_example.IMP_DOMINO_HAS_IMP_CGAL
769 
770 _IMP_example.IMP_DOMINO_HAS_IMP_EM_swigconstant(_IMP_example)
771 IMP_DOMINO_HAS_IMP_EM = _IMP_example.IMP_DOMINO_HAS_IMP_EM
772 
773 _IMP_example.IMP_DOMINO_HAS_IMP_ISD_swigconstant(_IMP_example)
774 IMP_DOMINO_HAS_IMP_ISD = _IMP_example.IMP_DOMINO_HAS_IMP_ISD
775 
776 _IMP_example.IMP_DOMINO_HAS_IMP_KERNEL_swigconstant(_IMP_example)
777 IMP_DOMINO_HAS_IMP_KERNEL = _IMP_example.IMP_DOMINO_HAS_IMP_KERNEL
778 
779 _IMP_example.IMP_DOMINO_HAS_IMP_RMF_swigconstant(_IMP_example)
780 IMP_DOMINO_HAS_IMP_RMF = _IMP_example.IMP_DOMINO_HAS_IMP_RMF
781 
782 _IMP_example.IMP_DOMINO_HAS_IMP_SAXS_swigconstant(_IMP_example)
783 IMP_DOMINO_HAS_IMP_SAXS = _IMP_example.IMP_DOMINO_HAS_IMP_SAXS
784 
785 _IMP_example.IMP_DOMINO_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_example)
786 IMP_DOMINO_HAS_IMP_SCORE_FUNCTOR = _IMP_example.IMP_DOMINO_HAS_IMP_SCORE_FUNCTOR
787 
788 _IMP_example.IMP_DOMINO_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_example)
789 IMP_DOMINO_HAS_BOOST_FILESYSTEM = _IMP_example.IMP_DOMINO_HAS_BOOST_FILESYSTEM
790 
791 _IMP_example.IMP_DOMINO_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_example)
792 IMP_DOMINO_HAS_BOOST_PROGRAMOPTIONS = _IMP_example.IMP_DOMINO_HAS_BOOST_PROGRAMOPTIONS
793 
794 _IMP_example.IMP_DOMINO_HAS_BOOST_RANDOM_swigconstant(_IMP_example)
795 IMP_DOMINO_HAS_BOOST_RANDOM = _IMP_example.IMP_DOMINO_HAS_BOOST_RANDOM
796 
797 _IMP_example.IMP_DOMINO_HAS_BOOST_REGEX_swigconstant(_IMP_example)
798 IMP_DOMINO_HAS_BOOST_REGEX = _IMP_example.IMP_DOMINO_HAS_BOOST_REGEX
799 
800 _IMP_example.IMP_DOMINO_HAS_BOOST_SYSTEM_swigconstant(_IMP_example)
801 IMP_DOMINO_HAS_BOOST_SYSTEM = _IMP_example.IMP_DOMINO_HAS_BOOST_SYSTEM
802 
803 _IMP_example.IMP_DOMINO_HAS_CGAL_swigconstant(_IMP_example)
804 IMP_DOMINO_HAS_CGAL = _IMP_example.IMP_DOMINO_HAS_CGAL
805 
806 _IMP_example.IMP_DOMINO_HAS_HDF5_swigconstant(_IMP_example)
807 IMP_DOMINO_HAS_HDF5 = _IMP_example.IMP_DOMINO_HAS_HDF5
808 
809 _IMP_example.IMP_DOMINO_HAS_NUMPY_swigconstant(_IMP_example)
810 IMP_DOMINO_HAS_NUMPY = _IMP_example.IMP_DOMINO_HAS_NUMPY
811 
812 _IMP_example.IMP_DOMINO_HAS_RMF_swigconstant(_IMP_example)
813 IMP_DOMINO_HAS_RMF = _IMP_example.IMP_DOMINO_HAS_RMF
814 
815 _IMP_example.IMP_DOMINO_HAS_PYTHON_IHM_swigconstant(_IMP_example)
816 IMP_DOMINO_HAS_PYTHON_IHM = _IMP_example.IMP_DOMINO_HAS_PYTHON_IHM
817 
818 _IMP_example.IMPDOMINO_SHOW_WARNINGS_swigconstant(_IMP_example)
819 IMPDOMINO_SHOW_WARNINGS = _IMP_example.IMPDOMINO_SHOW_WARNINGS
820 import RMF_HDF5
821 import IMP.domino
822 
823 _IMP_example.IMP_EXAMPLE_HAS_IMP_ALGEBRA_swigconstant(_IMP_example)
824 IMP_EXAMPLE_HAS_IMP_ALGEBRA = _IMP_example.IMP_EXAMPLE_HAS_IMP_ALGEBRA
825 
826 _IMP_example.IMP_EXAMPLE_HAS_IMP_CGAL_swigconstant(_IMP_example)
827 IMP_EXAMPLE_HAS_IMP_CGAL = _IMP_example.IMP_EXAMPLE_HAS_IMP_CGAL
828 
829 _IMP_example.IMP_EXAMPLE_HAS_IMP_DISPLAY_swigconstant(_IMP_example)
830 IMP_EXAMPLE_HAS_IMP_DISPLAY = _IMP_example.IMP_EXAMPLE_HAS_IMP_DISPLAY
831 
832 _IMP_example.IMP_EXAMPLE_HAS_IMP_EM_swigconstant(_IMP_example)
833 IMP_EXAMPLE_HAS_IMP_EM = _IMP_example.IMP_EXAMPLE_HAS_IMP_EM
834 
835 _IMP_example.IMP_EXAMPLE_HAS_IMP_ISD_swigconstant(_IMP_example)
836 IMP_EXAMPLE_HAS_IMP_ISD = _IMP_example.IMP_EXAMPLE_HAS_IMP_ISD
837 
838 _IMP_example.IMP_EXAMPLE_HAS_IMP_KERNEL_swigconstant(_IMP_example)
839 IMP_EXAMPLE_HAS_IMP_KERNEL = _IMP_example.IMP_EXAMPLE_HAS_IMP_KERNEL
840 
841 _IMP_example.IMP_EXAMPLE_HAS_IMP_RMF_swigconstant(_IMP_example)
842 IMP_EXAMPLE_HAS_IMP_RMF = _IMP_example.IMP_EXAMPLE_HAS_IMP_RMF
843 
844 _IMP_example.IMP_EXAMPLE_HAS_IMP_SAXS_swigconstant(_IMP_example)
845 IMP_EXAMPLE_HAS_IMP_SAXS = _IMP_example.IMP_EXAMPLE_HAS_IMP_SAXS
846 
847 _IMP_example.IMP_EXAMPLE_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_example)
848 IMP_EXAMPLE_HAS_IMP_SCORE_FUNCTOR = _IMP_example.IMP_EXAMPLE_HAS_IMP_SCORE_FUNCTOR
849 
850 _IMP_example.IMP_EXAMPLE_HAS_IMP_STATISTICS_swigconstant(_IMP_example)
851 IMP_EXAMPLE_HAS_IMP_STATISTICS = _IMP_example.IMP_EXAMPLE_HAS_IMP_STATISTICS
852 
853 _IMP_example.IMP_EXAMPLE_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_example)
854 IMP_EXAMPLE_HAS_BOOST_FILESYSTEM = _IMP_example.IMP_EXAMPLE_HAS_BOOST_FILESYSTEM
855 
856 _IMP_example.IMP_EXAMPLE_HAS_BOOST_GRAPH_swigconstant(_IMP_example)
857 IMP_EXAMPLE_HAS_BOOST_GRAPH = _IMP_example.IMP_EXAMPLE_HAS_BOOST_GRAPH
858 
859 _IMP_example.IMP_EXAMPLE_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_example)
860 IMP_EXAMPLE_HAS_BOOST_PROGRAMOPTIONS = _IMP_example.IMP_EXAMPLE_HAS_BOOST_PROGRAMOPTIONS
861 
862 _IMP_example.IMP_EXAMPLE_HAS_BOOST_RANDOM_swigconstant(_IMP_example)
863 IMP_EXAMPLE_HAS_BOOST_RANDOM = _IMP_example.IMP_EXAMPLE_HAS_BOOST_RANDOM
864 
865 _IMP_example.IMP_EXAMPLE_HAS_BOOST_REGEX_swigconstant(_IMP_example)
866 IMP_EXAMPLE_HAS_BOOST_REGEX = _IMP_example.IMP_EXAMPLE_HAS_BOOST_REGEX
867 
868 _IMP_example.IMP_EXAMPLE_HAS_BOOST_SYSTEM_swigconstant(_IMP_example)
869 IMP_EXAMPLE_HAS_BOOST_SYSTEM = _IMP_example.IMP_EXAMPLE_HAS_BOOST_SYSTEM
870 
871 _IMP_example.IMP_EXAMPLE_HAS_CGAL_swigconstant(_IMP_example)
872 IMP_EXAMPLE_HAS_CGAL = _IMP_example.IMP_EXAMPLE_HAS_CGAL
873 
874 _IMP_example.IMP_EXAMPLE_HAS_HDF5_swigconstant(_IMP_example)
875 IMP_EXAMPLE_HAS_HDF5 = _IMP_example.IMP_EXAMPLE_HAS_HDF5
876 
877 _IMP_example.IMP_EXAMPLE_HAS_NUMPY_swigconstant(_IMP_example)
878 IMP_EXAMPLE_HAS_NUMPY = _IMP_example.IMP_EXAMPLE_HAS_NUMPY
879 
880 _IMP_example.IMP_EXAMPLE_HAS_RMF_swigconstant(_IMP_example)
881 IMP_EXAMPLE_HAS_RMF = _IMP_example.IMP_EXAMPLE_HAS_RMF
882 
883 _IMP_example.IMP_EXAMPLE_HAS_PYTHON_IHM_swigconstant(_IMP_example)
884 IMP_EXAMPLE_HAS_PYTHON_IHM = _IMP_example.IMP_EXAMPLE_HAS_PYTHON_IHM
885 
886 _IMP_example.IMP_EXAMPLE_HAS_EXAMPLEDEPENDENCY_swigconstant(_IMP_example)
887 IMP_EXAMPLE_HAS_EXAMPLEDEPENDENCY = _IMP_example.IMP_EXAMPLE_HAS_EXAMPLEDEPENDENCY
888 
889 _IMP_example.IMPEXAMPLE_SHOW_WARNINGS_swigconstant(_IMP_example)
890 IMPEXAMPLE_SHOW_WARNINGS = _IMP_example.IMPEXAMPLE_SHOW_WARNINGS
891 
892 _object_types.append("ExampleRestraint")
893 
894 
895 def _object_cast_to_ExampleRestraint(o):
896  """_object_cast_to_ExampleRestraint(Object o) -> ExampleRestraint"""
897  return _IMP_example._object_cast_to_ExampleRestraint(o)
898 
899 def ExampleDecorators(l=[]):
900  return [ExampleDecorator(x) for x in l]
901 _plural_types.append("ExampleDecorators")
902 
903 
904 _value_types.append("ExampleDecorator")
905 
906 
907 _object_types.append("ExampleUnaryFunction")
908 
909 
910 def _object_cast_to_ExampleUnaryFunction(o):
911  """_object_cast_to_ExampleUnaryFunction(Object o) -> ExampleUnaryFunction"""
912  return _IMP_example._object_cast_to_ExampleUnaryFunction(o)
913 
914 _object_types.append("ExampleSingletonModifier")
915 
916 
917 def _object_cast_to_ExampleSingletonModifier(o):
918  """_object_cast_to_ExampleSingletonModifier(Object o) -> ExampleSingletonModifier"""
919  return _IMP_example._object_cast_to_ExampleSingletonModifier(o)
920 
921 _object_types.append("ExamplePairScore")
922 
923 
924 def _object_cast_to_ExamplePairScore(o):
925  """_object_cast_to_ExamplePairScore(Object o) -> ExamplePairScore"""
926  return _IMP_example._object_cast_to_ExamplePairScore(o)
927 
928 _object_types.append("ExampleSubsetFilterTable")
929 
930 
931 def _object_cast_to_ExampleSubsetFilterTable(o):
932  """_object_cast_to_ExampleSubsetFilterTable(Object o) -> ExampleSubsetFilterTable"""
933  return _IMP_example._object_cast_to_ExampleSubsetFilterTable(o)
934 
935 _object_types.append("ExampleConstraint")
936 
937 
938 def _object_cast_to_ExampleConstraint(o):
939  """_object_cast_to_ExampleConstraint(Object o) -> ExampleConstraint"""
940  return _IMP_example._object_cast_to_ExampleConstraint(o)
941 
942 _object_types.append("ExampleObject")
943 
944 
945 def _object_cast_to_ExampleObject(o):
946  """_object_cast_to_ExampleObject(Object o) -> ExampleObject"""
947  return _IMP_example._object_cast_to_ExampleObject(o)
948 
949 ExampleTemplateClass3Ds=list
950 _plural_types.append("ExampleTemplateClass3Ds")
951 _value_types.append("ExampleTemplateClass3D")
952 
953 
954 def create_model_and_particles():
955  m = IMP.Model()
956  sc = IMP.container.ListSingletonContainer(m)
957  b = IMP.algebra.BoundingBox3D(IMP.algebra.Vector3D(0,0,0),
958  IMP.algebra.Vector3D(10,10,10))
959  for i in range(0,100):
960  p = m.add_particle("p")
961  sc.add(p)
962  d = IMP.core.XYZR.setup_particle(m, p,
963  IMP.algebra.Sphere3D(IMP.algebra.get_random_vector_in(b), 1))
964  d.set_coordinates_are_optimized(True)
965  return (m, sc)
966 
967 
968 
969 class PythonExampleRestraint(IMP.Restraint):
970  """An example restraint written in Python.
971  This should be functionally equivalent to the C++ ExampleRestraint.
972  """
973  def __init__(self, m, p, k):
974  IMP.Restraint.__init__(self, m, "PythonExampleRestraint%1%")
975  self.p, self.k = p, k
976 
977  def do_add_score_and_derivatives(self, sa):
978  d = IMP.core.XYZ(self.get_model(), self.p)
979  score = .5 * self.k * d.get_z() * d.get_z()
980  if sa.get_derivative_accumulator():
981  deriv = self.k * d.get_z()
982  d.add_to_derivative(2, deriv, sa.get_derivative_accumulator())
983  sa.add_score(score)
984 
985  def do_get_inputs(self):
986  return [self.get_model().get_particle(self.p)]
987 
988 
989 
990 
991 class PythonExamplePairScore(IMP.PairScore):
992  """An example PairScore written in Python.
993  This should be functionally equivalent to the C++ ExamplePairScore.
994  """
995  def __init__(self, x0, k):
996  IMP.PairScore.__init__(self)
997  self.x0, self.k = x0, k
998 
999  def evaluate_index(self, m, pip, da):
1000  d0 = IMP.core.XYZ(m, pip[0])
1001  d1 = IMP.core.XYZ(m, pip[1])
1002  diff = (d0.get_coordinates()
1003  - d1.get_coordinates()).get_magnitude() - self.x0
1004  score = .5 * self.k * diff * diff
1005  if da:
1006 # derivatives are requested
1007  delta = d0.get_coordinates() - d1.get_coordinates()
1008  udelta = delta.get_unit_vector()
1009  dv = self.k * diff
1010  d0.add_to_derivatives(udelta * dv, da)
1011  d1.add_to_derivatives(-udelta * dv, da)
1012  return score
1013 
1014  def do_get_inputs(self, m, pis):
1015  return IMP.get_particles(m, pis)
1016 
1017 
1018 
1019 
1020 class PythonExampleUnaryFunction(IMP.UnaryFunction):
1021  """An example UnaryFunction written in Python.
1022  This should be functionally equivalent to the C++ ExampleUnaryFunction.
1023  """
1024  def __init__(self, center, k):
1025  IMP.UnaryFunction.__init__(self)
1026  self.center, self.k = center, k
1027 
1028  def evaluate_with_derivative(self, feature):
1029  return (self.evaluate(feature), self.k * (feature - self.center))
1030 
1031  def evaluate(self, feature):
1032  return .5 * self.k * (feature - self.center) * (feature - self.center)
1033 
1034 
1035 
1036 
1037 class PythonExampleConstraint(IMP.Constraint):
1038  """An example Constraint written in Python.
1039  This should be functionally equivalent to the C++ ExampleConstraint.
1040  """
1041 
1042  k = None
1043 
1044  def __init__(self, p):
1045  IMP.Constraint.__init__(self, p.get_model(), "ExampleConstraint%1%")
1046  self.p = p
1047  if self.k is None:
1048  PythonExampleConstraint.k = IMP.IntKey("Constraint key")
1049  if not p.has_attribute(self.k):
1050  p.add_attribute(self.k, 0)
1051 
1052  def do_update_attributes(self):
1053  self.p.set_value(self.k, self.p.get_value(self.k) + 1)
1054 
1055  def do_update_derivatives(self, da):
1056  pass
1057 
1058  def do_get_inputs(self):
1059  return [self.p]
1060 
1061  def do_get_outputs(self):
1062  return [self.p]
1063 
1064 
1065 
1066 
1067 class PythonExampleSingletonModifier(IMP.SingletonModifier):
1068  """An example SingletonModifier written in Python.
1069  This should be functionally equivalent to the C++
1070  ExampleSingletonModifier.
1071  """
1072 
1073  def __init__(self, bb):
1074  IMP.SingletonModifier.__init__(self, "ExampleSingletonModifier%1%")
1075  self.bb = bb
1076 
1077  def apply_index(self, m, pi):
1078  d = IMP.core.XYZ(m, pi)
1079  for i in range(3):
1080 # shift the coordinate until it is in the box
1081  while d.get_coordinate(i) < self.bb.get_corner(0)[i]:
1082  d.set_coordinate(i,d.get_coordinate(i) + \
1083  (self.bb.get_corner(1)[i] - self.bb.get_corner(0)[i]))
1084  while d.get_coordinate(i) > self.bb.get_corner(1)[i]:
1085  d.set_coordinate(i,d.get_coordinate(i) - \
1086  (self.bb.get_corner(1)[i] - self.bb.get_corner(0)[i]))
1087 
1088  def do_get_inputs(self, m, pis):
1089  return IMP.get_particles(m, pis)
1090 
1091  def do_get_outputs(self, m, pis):
1092  return self.do_get_inputs(m, pis)
1093 
1094 
1095 class ExampleRestraint(IMP.Restraint):
1096  """Proxy of C++ IMP::example::ExampleRestraint class"""
1097  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1098 
1099  def __init__(self, m, p, k):
1100  """__init__(IMP::example::ExampleRestraint self, Model m, ParticleIndex p, double k) -> ExampleRestraint"""
1101  this = _IMP_example.new_ExampleRestraint(m, p, k)
1102  try:
1103  self.this.append(this)
1104  except:
1105  self.this = this
1106 
1107  def do_add_score_and_derivatives(self, sa):
1108  """do_add_score_and_derivatives(ExampleRestraint self, ScoreAccumulator sa)"""
1109  return _IMP_example.ExampleRestraint_do_add_score_and_derivatives(self, sa)
1110 
1111 
1112  def do_get_inputs(self):
1113  """do_get_inputs(ExampleRestraint self) -> IMP::ModelObjectsTemp"""
1114  return _IMP_example.ExampleRestraint_do_get_inputs(self)
1115 
1116 
1117  def get_version_info(self):
1118  """get_version_info(ExampleRestraint self) -> VersionInfo"""
1119  return _IMP_example.ExampleRestraint_get_version_info(self)
1120 
1121 
1122  def __str__(self):
1123  """__str__(ExampleRestraint self) -> std::string"""
1124  return _IMP_example.ExampleRestraint___str__(self)
1125 
1126 
1127  def __repr__(self):
1128  """__repr__(ExampleRestraint self) -> std::string"""
1129  return _IMP_example.ExampleRestraint___repr__(self)
1130 
1131 
1132  @staticmethod
1133  def get_from(o):
1134  return _object_cast_to_ExampleRestraint(o)
1135 
1136 ExampleRestraint_swigregister = _IMP_example.ExampleRestraint_swigregister
1137 ExampleRestraint_swigregister(ExampleRestraint)
1138 
1139 class ExampleDecorator(IMP.Decorator):
1140  """Proxy of C++ IMP::example::ExampleDecorator class"""
1141  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1142 
1143  def get_decorator_name(self):
1144  """get_decorator_name(ExampleDecorator self) -> std::string"""
1145  return _IMP_example.ExampleDecorator_get_decorator_name(self)
1146 
1147 
1148  def set_decorator_name(self, nm):
1149  """set_decorator_name(ExampleDecorator self, std::string nm)"""
1150  return _IMP_example.ExampleDecorator_set_decorator_name(self, nm)
1151 
1152 
1153  def __init__(self, *args):
1154  """
1155  __init__(IMP::example::ExampleDecorator self) -> ExampleDecorator
1156  __init__(IMP::example::ExampleDecorator self, Model m, ParticleIndex id) -> ExampleDecorator
1157  __init__(IMP::example::ExampleDecorator self, _ParticleAdaptor d) -> ExampleDecorator
1158  """
1159  this = _IMP_example.new_ExampleDecorator(*args)
1160  try:
1161  self.this.append(this)
1162  except:
1163  self.this = this
1164 
1165  def get_is_setup(*args):
1166  """
1167  get_is_setup(Model m, ParticleIndex pi) -> bool
1168  get_is_setup(_ParticleAdaptor p) -> bool
1169  """
1170  return _IMP_example.ExampleDecorator_get_is_setup(*args)
1171 
1172  get_is_setup = staticmethod(get_is_setup)
1173 
1174  def show(self, *args):
1175  """
1176  show(ExampleDecorator self, _ostream out)
1177  show(ExampleDecorator self)
1178  """
1179  return _IMP_example.ExampleDecorator_show(self, *args)
1180 
1181 
1182  def setup_particle(*args):
1183  """
1184  setup_particle(Model m, ParticleIndex pi, std::string name) -> ExampleDecorator
1185  setup_particle(_ParticleAdaptor decorator, std::string name) -> ExampleDecorator
1186  """
1187  return _IMP_example.ExampleDecorator_setup_particle(*args)
1188 
1189  setup_particle = staticmethod(setup_particle)
1190 
1191  def add_attribute(self, *args):
1192  """
1193  add_attribute(ExampleDecorator self, FloatKey k, IMP::Float v, bool opt)
1194  add_attribute(ExampleDecorator self, FloatKey a0, IMP::Float a1)
1195  add_attribute(ExampleDecorator self, IntKey a0, IMP::Int a1)
1196  add_attribute(ExampleDecorator self, FloatsKey a0, IMP::Floats a1)
1197  add_attribute(ExampleDecorator self, IntsKey a0, IMP::Ints a1)
1198  add_attribute(ExampleDecorator self, StringKey a0, IMP::String a1)
1199  add_attribute(ExampleDecorator self, ParticleIndexKey a0, Particle a1)
1200  add_attribute(ExampleDecorator self, ObjectKey a0, Object a1)
1201  """
1202  return _IMP_example.ExampleDecorator_add_attribute(self, *args)
1203 
1204 
1205  def get_value(self, *args):
1206  """
1207  get_value(ExampleDecorator self, FloatKey a0) -> IMP::Float
1208  get_value(ExampleDecorator self, IntKey a0) -> IMP::Int
1209  get_value(ExampleDecorator self, FloatsKey a0) -> IMP::Floats
1210  get_value(ExampleDecorator self, IntsKey a0) -> IMP::Ints
1211  get_value(ExampleDecorator self, StringKey a0) -> IMP::String
1212  get_value(ExampleDecorator self, ParticleIndexKey a0) -> Particle
1213  get_value(ExampleDecorator self, ObjectKey a0) -> Object
1214  """
1215  return _IMP_example.ExampleDecorator_get_value(self, *args)
1216 
1217 
1218  def set_value(self, *args):
1219  """
1220  set_value(ExampleDecorator self, FloatKey a0, IMP::Float a1)
1221  set_value(ExampleDecorator self, IntKey a0, IMP::Int a1)
1222  set_value(ExampleDecorator self, FloatsKey a0, IMP::Floats a1)
1223  set_value(ExampleDecorator self, IntsKey a0, IMP::Ints a1)
1224  set_value(ExampleDecorator self, StringKey a0, IMP::String a1)
1225  set_value(ExampleDecorator self, ParticleIndexKey a0, Particle a1)
1226  set_value(ExampleDecorator self, ObjectKey a0, Object a1)
1227  """
1228  return _IMP_example.ExampleDecorator_set_value(self, *args)
1229 
1230 
1231  def remove_attribute(self, *args):
1232  """
1233  remove_attribute(ExampleDecorator self, FloatKey a0)
1234  remove_attribute(ExampleDecorator self, IntKey a0)
1235  remove_attribute(ExampleDecorator self, FloatsKey a0)
1236  remove_attribute(ExampleDecorator self, IntsKey a0)
1237  remove_attribute(ExampleDecorator self, StringKey a0)
1238  remove_attribute(ExampleDecorator self, ParticleIndexKey a0)
1239  remove_attribute(ExampleDecorator self, ObjectKey a0)
1240  """
1241  return _IMP_example.ExampleDecorator_remove_attribute(self, *args)
1242 
1243 
1244  def has_attribute(self, *args):
1245  """
1246  has_attribute(ExampleDecorator self, FloatKey a0) -> bool
1247  has_attribute(ExampleDecorator self, IntKey a0) -> bool
1248  has_attribute(ExampleDecorator self, FloatsKey a0) -> bool
1249  has_attribute(ExampleDecorator self, IntsKey a0) -> bool
1250  has_attribute(ExampleDecorator self, StringKey a0) -> bool
1251  has_attribute(ExampleDecorator self, ParticleIndexKey a0) -> bool
1252  has_attribute(ExampleDecorator self, ObjectKey a0) -> bool
1253  """
1254  return _IMP_example.ExampleDecorator_has_attribute(self, *args)
1255 
1256 
1257  def get_derivative(self, a0):
1258  """get_derivative(ExampleDecorator self, FloatKey a0) -> double"""
1259  return _IMP_example.ExampleDecorator_get_derivative(self, a0)
1260 
1261 
1262  def get_name(self):
1263  """get_name(ExampleDecorator self) -> std::string"""
1264  return _IMP_example.ExampleDecorator_get_name(self)
1265 
1266 
1267  def clear_caches(self):
1268  """clear_caches(ExampleDecorator self)"""
1269  return _IMP_example.ExampleDecorator_clear_caches(self)
1270 
1271 
1272  def set_name(self, a0):
1273  """set_name(ExampleDecorator self, std::string a0)"""
1274  return _IMP_example.ExampleDecorator_set_name(self, a0)
1275 
1276 
1277  def set_check_level(self, a0):
1278  """set_check_level(ExampleDecorator self, IMP::CheckLevel a0)"""
1279  return _IMP_example.ExampleDecorator_set_check_level(self, a0)
1280 
1281 
1282  def add_to_derivative(self, a0, a1, a2):
1283  """add_to_derivative(ExampleDecorator self, FloatKey a0, double a1, DerivativeAccumulator a2)"""
1284  return _IMP_example.ExampleDecorator_add_to_derivative(self, a0, a1, a2)
1285 
1286 
1287  def set_is_optimized(self, a0, a1):
1288  """set_is_optimized(ExampleDecorator self, FloatKey a0, bool a1)"""
1289  return _IMP_example.ExampleDecorator_set_is_optimized(self, a0, a1)
1290 
1291 
1292  def get_is_optimized(self, a0):
1293  """get_is_optimized(ExampleDecorator self, FloatKey a0) -> bool"""
1294  return _IMP_example.ExampleDecorator_get_is_optimized(self, a0)
1295 
1296 
1297  def get_check_level(self):
1298  """get_check_level(ExampleDecorator self) -> IMP::CheckLevel"""
1299  return _IMP_example.ExampleDecorator_get_check_level(self)
1300 
1301 
1302  def __eq__(self, *args):
1303  """
1304  __eq__(ExampleDecorator self, ExampleDecorator o) -> bool
1305  __eq__(ExampleDecorator self, Particle d) -> bool
1306  """
1307  return _IMP_example.ExampleDecorator___eq__(self, *args)
1308 
1309 
1310  def __ne__(self, *args):
1311  """
1312  __ne__(ExampleDecorator self, ExampleDecorator o) -> bool
1313  __ne__(ExampleDecorator self, Particle d) -> bool
1314  """
1315  return _IMP_example.ExampleDecorator___ne__(self, *args)
1316 
1317 
1318  def __le__(self, *args):
1319  """
1320  __le__(ExampleDecorator self, ExampleDecorator o) -> bool
1321  __le__(ExampleDecorator self, Particle d) -> bool
1322  """
1323  return _IMP_example.ExampleDecorator___le__(self, *args)
1324 
1325 
1326  def __lt__(self, *args):
1327  """
1328  __lt__(ExampleDecorator self, ExampleDecorator o) -> bool
1329  __lt__(ExampleDecorator self, Particle d) -> bool
1330  """
1331  return _IMP_example.ExampleDecorator___lt__(self, *args)
1332 
1333 
1334  def __ge__(self, *args):
1335  """
1336  __ge__(ExampleDecorator self, ExampleDecorator o) -> bool
1337  __ge__(ExampleDecorator self, Particle d) -> bool
1338  """
1339  return _IMP_example.ExampleDecorator___ge__(self, *args)
1340 
1341 
1342  def __gt__(self, *args):
1343  """
1344  __gt__(ExampleDecorator self, ExampleDecorator o) -> bool
1345  __gt__(ExampleDecorator self, Particle d) -> bool
1346  """
1347  return _IMP_example.ExampleDecorator___gt__(self, *args)
1348 
1349 
1350  def __hash__(self):
1351  """__hash__(ExampleDecorator self) -> std::size_t"""
1352  return _IMP_example.ExampleDecorator___hash__(self)
1353 
1354 
1355  def __str__(self):
1356  """__str__(ExampleDecorator self) -> std::string"""
1357  return _IMP_example.ExampleDecorator___str__(self)
1358 
1359 
1360  def __repr__(self):
1361  """__repr__(ExampleDecorator self) -> std::string"""
1362  return _IMP_example.ExampleDecorator___repr__(self)
1363 
1364  __swig_destroy__ = _IMP_example.delete_ExampleDecorator
1365  __del__ = lambda self: None
1366 ExampleDecorator_swigregister = _IMP_example.ExampleDecorator_swigregister
1367 ExampleDecorator_swigregister(ExampleDecorator)
1368 
1369 def ExampleDecorator_get_is_setup(*args):
1370  """
1371  get_is_setup(Model m, ParticleIndex pi) -> bool
1372  ExampleDecorator_get_is_setup(_ParticleAdaptor p) -> bool
1373  """
1374  return _IMP_example.ExampleDecorator_get_is_setup(*args)
1375 
1376 def ExampleDecorator_setup_particle(*args):
1377  """
1378  setup_particle(Model m, ParticleIndex pi, std::string name) -> ExampleDecorator
1379  ExampleDecorator_setup_particle(_ParticleAdaptor decorator, std::string name) -> ExampleDecorator
1380  """
1381  return _IMP_example.ExampleDecorator_setup_particle(*args)
1382 
1383 
1384 def __lshift__(out, n):
1385  """__lshift__(_ostream out, ExampleDecorator n) -> _ostream"""
1386  return _IMP_example.__lshift__(out, n)
1387 class ExampleUnaryFunction(IMP.UnaryFunction):
1388  """Proxy of C++ IMP::example::ExampleUnaryFunction class"""
1389  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1390 
1391  def __init__(self, center, k):
1392  """__init__(IMP::example::ExampleUnaryFunction self, IMP::Float center, IMP::Float k) -> ExampleUnaryFunction"""
1393  this = _IMP_example.new_ExampleUnaryFunction(center, k)
1394  try:
1395  self.this.append(this)
1396  except:
1397  self.this = this
1398 
1399  def get_version_info(self):
1400  """get_version_info(ExampleUnaryFunction self) -> VersionInfo"""
1401  return _IMP_example.ExampleUnaryFunction_get_version_info(self)
1402 
1403 
1404  def __str__(self):
1405  """__str__(ExampleUnaryFunction self) -> std::string"""
1406  return _IMP_example.ExampleUnaryFunction___str__(self)
1407 
1408 
1409  def __repr__(self):
1410  """__repr__(ExampleUnaryFunction self) -> std::string"""
1411  return _IMP_example.ExampleUnaryFunction___repr__(self)
1412 
1413 
1414  @staticmethod
1415  def get_from(o):
1416  return _object_cast_to_ExampleUnaryFunction(o)
1417 
1418 ExampleUnaryFunction_swigregister = _IMP_example.ExampleUnaryFunction_swigregister
1419 ExampleUnaryFunction_swigregister(ExampleUnaryFunction)
1420 
1421 class ExampleObject(IMP.Object):
1422  """Proxy of C++ IMP::example::ExampleObject class"""
1423  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1424 
1425  def __init__(self, data):
1426  """__init__(IMP::example::ExampleObject self, IMP::Floats const & data) -> ExampleObject"""
1427  this = _IMP_example.new_ExampleObject(data)
1428  try:
1429  self.this.append(this)
1430  except:
1431  self.this = this
1432 
1433  def get_data(self, i):
1434  """get_data(ExampleObject self, unsigned int i) -> double"""
1435  return _IMP_example.ExampleObject_get_data(self, i)
1436 
1437 
1438  def get_version_info(self):
1439  """get_version_info(ExampleObject self) -> VersionInfo"""
1440  return _IMP_example.ExampleObject_get_version_info(self)
1441 
1442 
1443  def __str__(self):
1444  """__str__(ExampleObject self) -> std::string"""
1445  return _IMP_example.ExampleObject___str__(self)
1446 
1447 
1448  def __repr__(self):
1449  """__repr__(ExampleObject self) -> std::string"""
1450  return _IMP_example.ExampleObject___repr__(self)
1451 
1452 
1453  @staticmethod
1454  def get_from(o):
1455  return _object_cast_to_ExampleObject(o)
1456 
1457 ExampleObject_swigregister = _IMP_example.ExampleObject_swigregister
1458 ExampleObject_swigregister(ExampleObject)
1459 
1460 class ExampleSingletonModifier(IMP.SingletonModifier):
1461  """Proxy of C++ IMP::example::ExampleSingletonModifier class"""
1462  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1463 
1464  def __init__(self, bb):
1465  """__init__(IMP::example::ExampleSingletonModifier self, BoundingBox3D bb) -> ExampleSingletonModifier"""
1466  this = _IMP_example.new_ExampleSingletonModifier(bb)
1467  try:
1468  self.this.append(this)
1469  except:
1470  self.this = this
1471 
1472  def do_get_inputs(self, m, pis):
1473  """do_get_inputs(ExampleSingletonModifier self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
1474  return _IMP_example.ExampleSingletonModifier_do_get_inputs(self, m, pis)
1475 
1476 
1477  def do_get_outputs(self, m, pis):
1478  """do_get_outputs(ExampleSingletonModifier self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
1479  return _IMP_example.ExampleSingletonModifier_do_get_outputs(self, m, pis)
1480 
1481 
1482  def get_version_info(self):
1483  """get_version_info(ExampleSingletonModifier self) -> VersionInfo"""
1484  return _IMP_example.ExampleSingletonModifier_get_version_info(self)
1485 
1486 
1487  def __str__(self):
1488  """__str__(ExampleSingletonModifier self) -> std::string"""
1489  return _IMP_example.ExampleSingletonModifier___str__(self)
1490 
1491 
1492  def __repr__(self):
1493  """__repr__(ExampleSingletonModifier self) -> std::string"""
1494  return _IMP_example.ExampleSingletonModifier___repr__(self)
1495 
1496 
1497  @staticmethod
1498  def get_from(o):
1499  return _object_cast_to_ExampleSingletonModifier(o)
1500 
1501 ExampleSingletonModifier_swigregister = _IMP_example.ExampleSingletonModifier_swigregister
1502 ExampleSingletonModifier_swigregister(ExampleSingletonModifier)
1503 
1504 class ExamplePairScore(IMP.PairScore):
1505  """Proxy of C++ IMP::example::ExamplePairScore class"""
1506  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1507 
1508  def __init__(self, x0, k):
1509  """__init__(IMP::example::ExamplePairScore self, double x0, double k) -> ExamplePairScore"""
1510  this = _IMP_example.new_ExamplePairScore(x0, k)
1511  try:
1512  self.this.append(this)
1513  except:
1514  self.this = this
1515 
1516  def do_get_inputs(self, m, pis):
1517  """do_get_inputs(ExamplePairScore self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
1518  return _IMP_example.ExamplePairScore_do_get_inputs(self, m, pis)
1519 
1520 
1521  def get_version_info(self):
1522  """get_version_info(ExamplePairScore self) -> VersionInfo"""
1523  return _IMP_example.ExamplePairScore_get_version_info(self)
1524 
1525 
1526  def __str__(self):
1527  """__str__(ExamplePairScore self) -> std::string"""
1528  return _IMP_example.ExamplePairScore___str__(self)
1529 
1530 
1531  def __repr__(self):
1532  """__repr__(ExamplePairScore self) -> std::string"""
1533  return _IMP_example.ExamplePairScore___repr__(self)
1534 
1535 
1536  @staticmethod
1537  def get_from(o):
1538  return _object_cast_to_ExamplePairScore(o)
1539 
1540 ExamplePairScore_swigregister = _IMP_example.ExamplePairScore_swigregister
1541 ExamplePairScore_swigregister(ExamplePairScore)
1542 
1543 class ExampleSubsetFilterTable(IMP.domino.SubsetFilterTable):
1544  """Proxy of C++ IMP::example::ExampleSubsetFilterTable class"""
1545  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1546 
1547  def __init__(self, max_diff, pt):
1548  """__init__(IMP::example::ExampleSubsetFilterTable self, unsigned int max_diff, IMP::ParticlesTemp const & pt) -> ExampleSubsetFilterTable"""
1549  this = _IMP_example.new_ExampleSubsetFilterTable(max_diff, pt)
1550  try:
1551  self.this.append(this)
1552  except:
1553  self.this = this
1554 
1555  def get_version_info(self):
1556  """get_version_info(ExampleSubsetFilterTable self) -> VersionInfo"""
1557  return _IMP_example.ExampleSubsetFilterTable_get_version_info(self)
1558 
1559 
1560  def __str__(self):
1561  """__str__(ExampleSubsetFilterTable self) -> std::string"""
1562  return _IMP_example.ExampleSubsetFilterTable___str__(self)
1563 
1564 
1565  def __repr__(self):
1566  """__repr__(ExampleSubsetFilterTable self) -> std::string"""
1567  return _IMP_example.ExampleSubsetFilterTable___repr__(self)
1568 
1569 
1570  @staticmethod
1571  def get_from(o):
1572  return _object_cast_to_ExampleSubsetFilterTable(o)
1573 
1574 ExampleSubsetFilterTable_swigregister = _IMP_example.ExampleSubsetFilterTable_swigregister
1575 ExampleSubsetFilterTable_swigregister(ExampleSubsetFilterTable)
1576 
1577 class ExampleConstraint(IMP.Constraint):
1578  """Proxy of C++ IMP::example::ExampleConstraint class"""
1579  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1580 
1581  def __init__(self, p):
1582  """__init__(IMP::example::ExampleConstraint self, Particle p) -> ExampleConstraint"""
1583  this = _IMP_example.new_ExampleConstraint(p)
1584  try:
1585  self.this.append(this)
1586  except:
1587  self.this = this
1588 
1589  def do_get_inputs(self):
1590  """do_get_inputs(ExampleConstraint self) -> IMP::ModelObjectsTemp"""
1591  return _IMP_example.ExampleConstraint_do_get_inputs(self)
1592 
1593 
1594  def do_get_outputs(self):
1595  """do_get_outputs(ExampleConstraint self) -> IMP::ModelObjectsTemp"""
1596  return _IMP_example.ExampleConstraint_do_get_outputs(self)
1597 
1598 
1599  def get_key():
1600  """get_key() -> IntKey"""
1601  return _IMP_example.ExampleConstraint_get_key()
1602 
1603  get_key = staticmethod(get_key)
1604 
1605  def get_version_info(self):
1606  """get_version_info(ExampleConstraint self) -> VersionInfo"""
1607  return _IMP_example.ExampleConstraint_get_version_info(self)
1608 
1609 
1610  def __str__(self):
1611  """__str__(ExampleConstraint self) -> std::string"""
1612  return _IMP_example.ExampleConstraint___str__(self)
1613 
1614 
1615  def __repr__(self):
1616  """__repr__(ExampleConstraint self) -> std::string"""
1617  return _IMP_example.ExampleConstraint___repr__(self)
1618 
1619 
1620  @staticmethod
1621  def get_from(o):
1622  return _object_cast_to_ExampleConstraint(o)
1623 
1624 ExampleConstraint_swigregister = _IMP_example.ExampleConstraint_swigregister
1625 ExampleConstraint_swigregister(ExampleConstraint)
1626 
1627 def ExampleConstraint_get_key():
1628  """ExampleConstraint_get_key() -> IntKey"""
1629  return _IMP_example.ExampleConstraint_get_key()
1630 
1631 
1632 def get_number_of_incidences(psa, psb, point_distance):
1633  """get_number_of_incidences(IMP::ParticlesTemp const & psa, IMP::ParticlesTemp const & psb, double point_distance) -> unsigned int"""
1634  return _IMP_example.get_number_of_incidences(psa, psb, point_distance)
1635 
1636 def create_chain_restraint(m, ps, length_factor, k, name):
1637  """create_chain_restraint(Model m, IMP::ParticleIndexes const & ps, double length_factor, double k, std::string name) -> Restraint"""
1638  return _IMP_example.create_chain_restraint(m, ps, length_factor, k, name)
1639 
1640 def create_excluded_volume(m, ps, k, name):
1641  """create_excluded_volume(Model m, IMP::ParticleIndexes const & ps, double k, std::string name) -> Restraint"""
1642  return _IMP_example.create_excluded_volume(m, ps, k, name)
1643 class ExampleTemplateClass3D(object):
1644  """Proxy of C++ IMP::example::ExampleTemplateClassD<(3)> class"""
1645  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1646 
1647  def __init__(self, *args):
1648  """
1649  __init__(IMP::example::ExampleTemplateClassD<(3)> self) -> ExampleTemplateClass3D
1650  __init__(IMP::example::ExampleTemplateClassD<(3)> self, Vector3D a, Vector3D b) -> ExampleTemplateClass3D
1651  """
1652  this = _IMP_example.new_ExampleTemplateClass3D(*args)
1653  try:
1654  self.this.append(this)
1655  except:
1656  self.this = this
1657 
1658  def get_point(self, i):
1659  """get_point(ExampleTemplateClass3D self, unsigned int i) -> Vector3D"""
1660  return _IMP_example.ExampleTemplateClass3D_get_point(self, i)
1661 
1662 
1663  def show(self, *args):
1664  """
1665  show(ExampleTemplateClass3D self, _ostream out)
1666  show(ExampleTemplateClass3D self)
1667  """
1668  return _IMP_example.ExampleTemplateClass3D_show(self, *args)
1669 
1670 
1671  def __str__(self):
1672  """__str__(ExampleTemplateClass3D self) -> std::string"""
1673  return _IMP_example.ExampleTemplateClass3D___str__(self)
1674 
1675 
1676  def __repr__(self):
1677  """__repr__(ExampleTemplateClass3D self) -> std::string"""
1678  return _IMP_example.ExampleTemplateClass3D___repr__(self)
1679 
1680  __swig_destroy__ = _IMP_example.delete_ExampleTemplateClass3D
1681  __del__ = lambda self: None
1682 ExampleTemplateClass3D_swigregister = _IMP_example.ExampleTemplateClass3D_swigregister
1683 ExampleTemplateClass3D_swigregister(ExampleTemplateClass3D)
1684 
1685 
1686 def get_module_version():
1687  """get_module_version() -> std::string const"""
1688  return _IMP_example.get_module_version()
1689 
1690 def get_example_path(fname):
1691  """get_example_path(std::string fname) -> std::string"""
1692  return _IMP_example.get_example_path(fname)
1693 
1694 def get_data_path(fname):
1695  """get_data_path(std::string fname) -> std::string"""
1696  return _IMP_example.get_data_path(fname)
1697 
1698 from . import _version_check
1699 _version_check.check_version(get_module_version())
1700 __version__ = get_module_version()
1701 
1702 
1703 
IMP::example::get_number_of_incidences
unsigned int get_number_of_incidences(const ParticlesTemp &psa, const ParticlesTemp &psb, double point_distance)
Definition: counting.h:23
IMP::SingletonModifier
A base class for modifiers of ParticlesTemp.
Definition: SingletonModifier.h:32
IMP::PairScore
Abstract class for scoring object(s) of type ParticleIndexPair.
Definition: PairScore.h:42
IMP::UnaryFunction::evaluate
virtual double evaluate(double feature) const
Calculate score with respect to the given feature.
Definition: UnaryFunction.h:33
IMP::example.PythonExamplePairScore
An example PairScore written in Python.
Definition: example/__init__.py:991
IMP::example.PythonExampleSingletonModifier
An example SingletonModifier written in Python.
Definition: example/__init__.py:1067
IMP::container
Various classes to hold sets of particles.
IMP::core::XYZR::setup_particle
static XYZR setup_particle(Model *m, ParticleIndex pi)
Definition: XYZR.h:48
IMP::example.PythonExampleUnaryFunction
An example UnaryFunction written in Python.
Definition: example/__init__.py:1020
IMP::cgal
Make CGAL functionality available to IMP.
IMP::example::ExampleTemplateClassD
A line segment templated on the dimension.
Definition: ExampleTemplateClass.h:32
IMP::get_particles
ParticlesTemp get_particles(Model *m, const ParticleIndexes &ps)
Get the particles from a list of indexes.
IMP::Object::clear_caches
virtual void clear_caches()
Definition: Object.h:227
IMP::ParticleOutputs::do_get_outputs
virtual ModelObjectsTemp do_get_outputs(Model *m, const ParticleIndexes &pis) const =0
Overload this method to specify the outputs.
IMP::score_functor
Composable functors to implement scores via compile-time composition.
IMP::example::create_excluded_volume
Restraint * create_excluded_volume(Model *m, const ParticleIndexes &ps, double k, std::string name)
Definition: creating_restraints.h:50
IMP::algebra::get_random_vector_in
Vector3D get_random_vector_in(const Cylinder3D &c)
Generate a random vector in a cylinder with uniform density.
IMP::statistics
Code to compute statistical measures.
IMP::Constraint
Implement a constraint on the Model.
Definition: Constraint.h:49
IMP::Model
Class for storing model, its restraints, constraints, and particles.
Definition: Model.h:73
IMP::example::ExampleObject
An example simple object which is reference counted.
Definition: ExampleObject.h:29
IMP::example::ExampleDecorator
A simple decorator which adds a name to a particle.
Definition: ExampleDecorator.h:32
IMP::example.PythonExampleConstraint
An example Constraint written in Python.
Definition: example/__init__.py:1037
IMP::Object
Common base class for heavy weight IMP objects.
Definition: Object.h:106
IMP::container::ListSingletonContainer
Store a list of ParticleIndexes.
Definition: ListSingletonContainer.h:33
IMP::example.PythonExampleRestraint
An example restraint written in Python.
Definition: example/__init__.py:969
IMP::ParticleInputs::do_get_inputs
virtual ModelObjectsTemp do_get_inputs(Model *m, const ParticleIndexes &pis) const =0
Overload this method to specify the inputs.
IMP::example::ExampleRestraint
Restrain a particle to be in the x,y plane.
Definition: ExampleRestraint.h:25
IMP::em
Basic utilities for handling cryo-electron microscopy 3D density maps.
IMP::core::XYZ
A decorator for a particle with x,y,z coordinates.
Definition: XYZ.h:30
IMP::Decorator
Interface to specialized Particle types (e.g. atoms)
Definition: Decorator.h:118
IMP::ModelObject::do_get_outputs
virtual ModelObjectsTemp do_get_outputs() const =0
IMP::core
Basic functionality that is expected to be used by a wide variety of IMP users.
IMP::algebra
General purpose algebraic and geometric methods that are expected to be used by a wide variety of IMP...
IMP::SingletonModifier::apply_index
virtual void apply_index(Model *m, ParticleIndex v) const =0
IMP::example::get_module_version
std::string get_module_version()
Return the version of this module, as a string.
Definition: EMageFit/__init__.py:5
IMP::Object::get_version_info
virtual VersionInfo get_version_info() const
Get information about the module and version of the object.
Definition: Object.h:173
IMP::UnaryFunction::evaluate_with_derivative
virtual DerivativePair evaluate_with_derivative(double feature) const
Calculate score and derivative with respect to the given feature.
Definition: UnaryFunction.h:48
IMP::algebra::Vector3D
VectorD< 3 > Vector3D
Definition: VectorD.h:421
IMP::Object::set_check_level
void set_check_level(CheckLevel l)
IMP::example::ExamplePairScore
Apply a harmonic to the distance between two particles.
Definition: ExamplePairScore.h:25
IMP::example::create_chain_restraint
Restraint * create_chain_restraint(Model *m, const ParticleIndexes &ps, double length_factor, double k, std::string name)
Definition: creating_restraints.h:31
IMP::example::get_example_path
std::string get_example_path(std::string file_name)
Return the full path to one of this module's example files.
IMP::ModelObject::get_model
Model * get_model() const
Definition: ModelObject.h:42
IMP::example::ExampleConstraint
A trivial constraint that just increments a counter.
Definition: ExampleConstraint.h:23
IMP::display
Output IMP model data in various file formats.
IMP::atom
Functionality for loading, creating, manipulating and scoring atomic structures.
IMP::example::get_data_path
std::string get_data_path(std::string file_name)
Return the full path to one of this module's data files.
IMP::rmf
Support for the RMF file format for storing hierarchical molecular data and markup.
IMP::UnaryFunction
Abstract single variable functor class for score functions.
Definition: UnaryFunction.h:25
IMP::ModelObject::do_get_inputs
virtual ModelObjectsTemp do_get_inputs() const =0
IMP::domino
Divide-and-conquer inferential optimization in discrete space.
IMP::PairScore::evaluate_index
virtual double evaluate_index(Model *m, const ParticleIndexPair &vt, DerivativeAccumulator *da) const =0
Compute the score and the derivative if needed.
IMP::saxs
Support for small angle X-ray scattering (SAXS) data.
IMP::isd
Inferential scoring building on methods developed as part of the Inferential Structure Determination ...
IMP::Restraint
A restraint is a term in an IMP ScoringFunction.
Definition: Restraint.h:53