Detailed Description

Class for easy writing of PDBs, RMFs, and stat files.

ote Model should be updated prior to writing outputs.

Definition at line 65 of file /output.py.

Public Member Functions
def	get_prot_name_from_particle
	Get the protein name from the particle. More...

def	init_pdb
	Init PDB Writing. More...

def	init_rmf
	This function initialize an RMF file. More...

Member Function Documentation

def IMP.pmi1.output.Output.get_prot_name_from_particle	(	self,
		name,
		p
	)

Get the protein name from the particle.

This is done by traversing the hierarchy.

Definition at line 209 of file /output.py.

def IMP.pmi1.output.Output.init_pdb	(	self,
		name,
		prot
	)

Init PDB Writing.

Parameters

name	The PDB filename
prot	The hierarchy to write to this pdb file

ote if the PDB name is 'System' then will use Selection to get molecules

Definition at line 106 of file /output.py.

def IMP.pmi1.output.Output.init_rmf	(	self,
		name,
		hierarchies,
		rs = `None`,
		geometries = `None`,
		listofobjects = `None`
	)

This function initialize an RMF file.

Parameters

name	the name of the RMF file
hierarchies	the hiearchies to be included (it is a list)
rs	optional, the restraint sets (it is a list)
geometries	optional, the geometries (it is a list)
listofobjects	optional, the list of objects for the stat (it is a list)

Definition at line 404 of file /output.py.

The documentation for this class was generated from the following file: