IMP.pmi1.analysis.Alignment Class Reference

Performs alignment and RMSD calculation for two sets of coordinates. More...

Inherits object.

Detailed Description

Performs alignment and RMSD calculation for two sets of coordinates.

The class also takes into account non-equal stoichiometry of the proteins. If this is the case, the protein names of proteins in multiple copies should be specified in the following form: nameA..1, nameA..2 (note two dots).

Note

This class is only available in Python.

Definition at line 23 of file pmi1/Analysis.py.

Public Member Functions
def	__init__
	Constructor. More...

Constructor & Destructor Documentation

def IMP.pmi1.analysis.Alignment.__init__	(		self,
			template,
			query,
			weights = None
	)

Constructor.

Parameters

query	{'p1':coords(L,3), 'p2':coords(L,3)}
template	{'p1':coords(L,3), 'p2':coords(L,3)}
weights	optional weights for each set of coordinates

Definition at line 32 of file pmi1/Analysis.py.

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The documentation for this class was generated from the following file:

• pmi1/Analysis.py