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IMP Reference Guide  2.17.0
The Integrative Modeling Platform
UniformPrior.h
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1 /**
2  * \file IMP/isd/UniformPrior.h
3  * \brief A restraint on a scale parameter.
4  *
5  * Copyright 2007-2022 IMP Inventors. All rights reserved.
6  *
7  */
8 
9 #ifndef IMPISD_UNIFORM_PRIOR_H
10 #define IMPISD_UNIFORM_PRIOR_H
11 
12 #include <IMP/isd/isd_config.h>
13 #include <IMP/SingletonScore.h>
14 #include <IMP/Restraint.h>
15 
16 IMPISD_BEGIN_NAMESPACE
17 
18 //! Uniform distribution with harmonic boundaries
19 
20 class IMPISDEXPORT UniformPrior : public Restraint
21 {
23  Float upperb_;
24  Float lowerb_;
25  Float k_;
26 
27 public:
28  //! Create the restraint.
30  Float upperb, Float lowerb, std::string name="UniformPrior%1%");
31 
32  virtual double
34  const override;
35  virtual IMP::ModelObjectsTemp do_get_inputs() const override;
37 
38  /* call for probability */
39  virtual double get_probability() const
40  {
41  return exp(-unprotected_evaluate(nullptr));
42  }
43 
44  //! \return Information for writing to RMF files
45  RestraintInfo *get_static_info() const override;
46 
47  //! \return Information for writing to RMF files
48  RestraintInfo *get_dynamic_info() const override;
49 
50 };
51 
52 IMPISD_END_NAMESPACE
53 
54 #endif /* IMPISD_UNIFORM_PRIOR_H */
virtual RestraintInfo * get_static_info() const
Definition: Restraint.h:182
virtual RestraintInfo * get_dynamic_info() const
Definition: Restraint.h:194
#define IMP_OBJECT_METHODS(Name)
Define the basic things needed by any Object.
Definition: object_macros.h:25
virtual double unprotected_evaluate(DerivativeAccumulator *da) const
Return the unweighted score for the restraint.
A more IMP-like version of the std::vector.
Definition: Vector.h:40
Uniform distribution with harmonic boundaries.
Definition: UniformPrior.h:20
A smart pointer to a reference counted object.
Definition: Pointer.h:87
Class for storing model, its restraints, constraints, and particles.
Definition: Model.h:73
Define SingletonScore.
Report key:value information on restraints.
Definition: RestraintInfo.h:35
double Float
Basic floating-point value (could be float, double...)
Definition: types.h:19
Class to handle individual particles of a Model object.
Definition: Particle.h:41
Abstract base class for all restraints.
virtual ModelObjectsTemp do_get_inputs() const =0
Class for adding derivatives from restraints to the model.
A restraint is a term in an IMP ScoringFunction.
Definition: Restraint.h:53