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IMP Reference Guide
2.16.0
The Integrative Modeling Platform
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#include <IMP/kinematics/KinematicForestScoreState.h>
Inheritance diagram for IMP::kinematics::KinematicForestScoreState:A score state that uses a KinematicForest of the model to update external coordinates before energy evaluation, if internal coordinates in the forest were altered previously.
Definition at line 41 of file KinematicForestScoreState.h.
Public Member Functions | |
| KinematicForestScoreState (KinematicForest *kf, IMP::core::RigidBodies rbs, IMP::ParticlesTemp atoms) | |
| void | do_after_evaluate (DerivativeAccumulator *da) |
| Do any necessary updates after the model score is calculated. More... | |
| void | do_before_evaluate () |
| Update the state given the current state of the model. More... | |
| ModelObjectsTemp | do_get_inputs () const |
| ModelObjectsTemp | do_get_outputs () const |
| virtual std::string | get_type_name () const |
| virtual ::IMP::VersionInfo | get_version_info () const |
| Get information about the module and version of the object. More... | |
| Public Member Functions inherited from IMP::ScoreState | |
| ScoreState (Model *m, std::string name) | |
| void | after_evaluate (DerivativeAccumulator *accpt) |
| Do post evaluation work if needed. More... | |
| void | before_evaluate () |
| Force update of the structure. More... | |
| bool | get_can_skip () const |
| Get whether this state can be skipped if its inputs/outputs didn't move. More... | |
| Public Member Functions inherited from IMP::ModelObject | |
| ModelObject (Model *m, std::string name) | |
| bool | get_has_dependencies () const |
| Return whether this object has dependencies computed. More... | |
| bool | get_has_required_score_states () const |
| Return whether score states are computed. More... | |
| ModelObjectsTemp | get_inputs () const |
| ModelObjectsTemps | get_interactions () const |
| Get the interacting sets induced by this ModelObject. More... | |
| Model * | get_model () const |
| ModelObjectsTemp | get_outputs () const |
| const ScoreStatesTemp & | get_required_score_states () const |
| Get the score states that are ancestors of this in the dependency graph. More... | |
| void | set_has_dependencies (bool tf) |
| Either invalidate the dependencies or ensure they are correct. More... | |
| void | set_has_required_score_states (bool tf) |
| Compute the required score states. More... | |
| Public Member Functions inherited from IMP::Object | |
| virtual void | clear_caches () |
| CheckLevel | get_check_level () const |
| LogLevel | get_log_level () const |
| void | set_check_level (CheckLevel l) |
| void | set_log_level (LogLevel l) |
| Set the logging level used in this object. More... | |
| void | set_was_used (bool tf) const |
| void | show (std::ostream &out=std::cout) const |
| const std::string & | get_name () const |
| void | set_name (std::string name) |
Additional Inherited Members | |
| Protected Member Functions inherited from IMP::ScoreState | |
| void | set_can_skip (bool can_skip) |
| Set whether we can skip during model evaluation if appropriate. More... | |
| Protected Member Functions inherited from IMP::ModelObject | |
| virtual ModelObjectsTemps | do_get_interactions () const |
| virtual void | handle_set_has_required_score_states (bool) |
| Protected Member Functions inherited from IMP::Object | |
| Object (std::string name) | |
| Construct an object with the given name. More... | |
| virtual void | do_destroy () |
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Do any necessary updates after the model score is calculated.
| [in] | accpt | The object used to scale derivatives in the score calculation, or nullptr if derivatives were not requested. |
Implements IMP::ScoreState.
Definition at line 57 of file KinematicForestScoreState.h.
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Update the state given the current state of the model.
This is also called prior to every calculation of the model score. It should be implemented by ScoreStates in order to provide functionality.
Implements IMP::ScoreState.
Definition at line 53 of file KinematicForestScoreState.h.
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Get any Particle, Container or other ModelObjects read by this during evaluation. If you read everything in a container, you can just return that container.
Implements IMP::ModelObject.
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Get any Particle, Container or other ModelObjects changed by this during evaluation. This is only useful for ScoreStates, at the moment.
Implements IMP::ModelObject.
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Get information about the module and version of the object.
Reimplemented from IMP::Object.
Definition at line 43 of file KinematicForestScoreState.h.