Detailed Description

Stores a set of PairContainers.

The input sets must be disjoint. This can change if there is demand for it.

Note: The maintenance of the invariant is done by an associated IMP::Constraint. As a result, the state is only guaranteed to be correct either during model evaluation, or immediately following model evaluation before any particles have been changed.

Definition at line 29 of file PairContainerSet.h.

Public Member Functions
	PairContainerSet (Model *m, std::string name="PairContainerSet %1%")
	Construct an empty set. More...

	PairContainerSet (const PairContainersTemp &pc, std::string name="PairContainerSet %1%")

template<class M >
void	apply_generic (const M *m) const
	apply modifier sm to all pair containers More...

template<class M >
void	apply_generic_moved (const M *m, const ParticleIndexes &moved_pis, const ParticleIndexes &reset_pis) const

ParticleIndexes	get_all_possible_indexes () const
	Get contained particles. More...

virtual std::string	get_type_name () const

virtual ::IMP::VersionInfo	get_version_info () const
	Get information about the module and version of the object. More...

Public Member Functions inherited from IMP::PairContainer
void	apply (const PairModifier *sm) const
	Apply a PairModifier to the contents. More...

void	apply_generic (const PairModifier *m) const
	Just use apply() in the base class. More...

void	apply_generic_moved (const PairModifier *m, const ParticleIndexes &moved_pis, const ParticleIndexes &reset_pis) const
	Just use apply_moved() in the base class. More...

void	apply_moved (const PairModifier *sm, const ParticleIndexes &moved_pis, const ParticleIndexes &reset_pis) const
	Apply a PairModifier to the contents. More...

const ParticleIndexPairs &	get_contents () const

virtual ParticleIndexPairs	get_indexes () const =0

virtual ParticleIndexPairs	get_range_indexes () const =0

Public Member Functions inherited from IMP::Container
ModelObjectsTemp	do_get_outputs () const
	containers don't have outputs More...

std::size_t	get_contents_hash () const

virtual bool	get_is_decomposable () const

Public Member Functions inherited from IMP::ModelObject
	ModelObject (Model *m, std::string name)

bool	get_has_dependencies () const
	Return whether this object has dependencies computed. More...

bool	get_has_required_score_states () const
	Return whether score states are computed. More...

ModelObjectsTemp	get_inputs () const

ModelObjectsTemps	get_interactions () const
	Get the interacting sets induced by this ModelObject. More...

Model *	get_model () const

ModelObjectsTemp	get_outputs () const

const ScoreStatesTemp &	get_required_score_states () const
	Get the score states that are ancestors of this in the dependency graph. More...

void	set_has_dependencies (bool tf)
	Either invalidate the dependencies or ensure they are correct. More...

void	set_has_required_score_states (bool tf)
	Compute the required score states. More...

Public Member Functions inherited from IMP::Object
virtual void	clear_caches ()

CheckLevel	get_check_level () const

LogLevel	get_log_level () const

void	set_check_level (CheckLevel l)

void	set_log_level (LogLevel l)
	Set the logging level used in this object. More...

void	set_was_used (bool tf) const

void	show (std::ostream &out=std::cout) const

const std::string &	get_name () const

void	set_name (std::string name)

Protected Member Functions
virtual void	get_indexes_in_place (ParticleIndexPairs &output) const

Protected Member Functions inherited from IMP::PairContainer
	PairContainer (Model *m, std::string name="PairContainer %1%")

virtual void	do_apply (const PairModifier *sm) const =0

virtual void	do_apply_moved (const PairModifier *sm, const ParticleIndexes &moved_pis, const ParticleIndexes &reset_pis) const

virtual bool	do_get_provides_access () const

Protected Member Functions inherited from IMP::Container
	Container (Model *m, std::string name="Container %1%")

Protected Member Functions inherited from IMP::ModelObject
virtual ModelObjectsTemp	do_get_inputs () const =0

virtual ModelObjectsTemps	do_get_interactions () const

virtual void	handle_set_has_required_score_states (bool)

Protected Member Functions inherited from IMP::Object
	Object (std::string name)
	Construct an object with the given name. More...

virtual void	do_destroy ()

Methods to control the nested container
This container merges a set of nested containers. To add or remove nested containers, use the methods below.
void	remove_pair_container (PairContainer *d)

void	remove_pair_containers (const PairContainers &d)

void	set_pair_containers (const PairContainers &ps)

void	set_pair_containers_order (const PairContainers &objs)

unsigned int	add_pair_container (PairContainer *obj)

void	add_pair_containers (const PairContainers &objs)

void	clear_pair_containers ()

unsigned int	get_number_of_pair_containers () const

bool	get_has_pair_containers ()

PairContainer *	get_pair_container (unsigned int i) const

PairContainers	get_pair_containers () const

void	reserve_pair_containers (unsigned int sz)

Additional Inherited Members
Public Types inherited from IMP::PairContainer
typedef ParticleIndexPair	ContainedIndexType

typedef ParticleIndexPairs	ContainedIndexTypes

typedef ParticlePair	ContainedType

typedef ParticlePairsTemp	ContainedTypes

typedef PairModifier	Modifier

typedef const ParticleIndexPair &	PassContainedIndexType

Constructor & Destructor Documentation

IMP::container::PairContainerSet::PairContainerSet	(	Model *	m,
		std::string	name = `"PairContainerSet %1%"`
	)

Construct an empty set.

Member Function Documentation

template<class M >

void IMP::container::PairContainerSet::apply_generic ( const M * m ) const

apply modifier sm to all pair containers

Definition at line 52 of file PairContainerSet.h.

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ParticleIndexes IMP::container::PairContainerSet::get_all_possible_indexes ( ) const

virtual

Get contained particles.

Get a list of all particles contained in this one, given that the input containers are up to date.

Implements IMP::Container.

virtual void IMP::container::PairContainerSet::get_indexes_in_place ( ParticleIndexPairs & output ) const

protectedvirtual

Insert the contents of the container into output instead of output's current content

virtual ::IMP::VersionInfo IMP::container::PairContainerSet::get_version_info ( ) const

virtual

Get information about the module and version of the object.

Reimplemented from IMP::Object.

Definition at line 63 of file PairContainerSet.h.

The documentation for this class was generated from the following file:

PairContainerSet.h

Detailed Description

Public Member Functions

Protected Member Functions

Methods to control the nested container

Additional Inherited Members

Constructor & Destructor Documentation

Member Function Documentation