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IMP Reference Guide  2.15.0
The Integrative Modeling Platform
version 2.15.0
example/__init__.py
1 # This file was automatically generated by SWIG (http://www.swig.org).
2 # Version 3.0.7
3 #
4 # Do not make changes to this file unless you know what you are doing--modify
5 # the SWIG interface file instead.
6 
7 # This wrapper is part of IMP,
8 # Copyright 2007-2021 IMP Inventors. All rights reserved.
9 
10 from __future__ import print_function, division, absolute_import
11 
12 
13 
14 
15 from sys import version_info
16 if version_info >= (2, 6, 0):
17  def swig_import_helper():
18  from os.path import dirname
19  import imp
20  fp = None
21  try:
22  fp, pathname, description = imp.find_module('_IMP_example', [dirname(__file__)])
23  except ImportError:
24  import _IMP_example
25  return _IMP_example
26  if fp is not None:
27  try:
28  _mod = imp.load_module('_IMP_example', fp, pathname, description)
29  finally:
30  fp.close()
31  return _mod
32  _IMP_example = swig_import_helper()
33  del swig_import_helper
34 else:
35  import _IMP_example
36 del version_info
37 try:
38  _swig_property = property
39 except NameError:
40  pass # Python < 2.2 doesn't have 'property'.
41 
42 
43 def _swig_setattr_nondynamic(self, class_type, name, value, static=1):
44  if (name == "thisown"):
45  return self.this.own(value)
46  if (name == "this"):
47  if type(value).__name__ == 'SwigPyObject':
48  self.__dict__[name] = value
49  return
50  method = class_type.__swig_setmethods__.get(name, None)
51  if method:
52  return method(self, value)
53  if (not static):
54  object.__setattr__(self, name, value)
55  else:
56  raise AttributeError("You cannot add attributes to %s" % self)
57 
58 
59 def _swig_setattr(self, class_type, name, value):
60  return _swig_setattr_nondynamic(self, class_type, name, value, 0)
61 
62 
63 def _swig_getattr_nondynamic(self, class_type, name, static=1):
64  if (name == "thisown"):
65  return self.this.own()
66  method = class_type.__swig_getmethods__.get(name, None)
67  if method:
68  return method(self)
69  if (not static):
70  return object.__getattr__(self, name)
71  else:
72  raise AttributeError(name)
73 
74 def _swig_getattr(self, class_type, name):
75  return _swig_getattr_nondynamic(self, class_type, name, 0)
76 
77 
78 def _swig_repr(self):
79  try:
80  strthis = "proxy of " + self.this.__repr__()
81  except:
82  strthis = ""
83  return "<%s.%s; %s >" % (self.__class__.__module__, self.__class__.__name__, strthis,)
84 
85 try:
86  _object = object
87  _newclass = 1
88 except AttributeError:
89  class _object:
90  pass
91  _newclass = 0
92 
93 
94 
95 def _swig_setattr_nondynamic_method(set):
96  def set_attr(self, name, value):
97  if (name == "thisown"):
98  return self.this.own(value)
99  if hasattr(self, name) or (name == "this"):
100  set(self, name, value)
101  else:
102  raise AttributeError("You cannot add attributes to %s" % self)
103  return set_attr
104 
105 
106 try:
107  import weakref
108  weakref_proxy = weakref.proxy
109 except:
110  weakref_proxy = lambda x: x
111 
112 
113 class IMP_EXAMPLE_SwigPyIterator(object):
114  """Proxy of C++ swig::IMP_EXAMPLE_SwigPyIterator class"""
115  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
116 
117  def __init__(self, *args, **kwargs):
118  raise AttributeError("No constructor defined - class is abstract")
119  __repr__ = _swig_repr
120  __swig_destroy__ = _IMP_example.delete_IMP_EXAMPLE_SwigPyIterator
121  __del__ = lambda self: None
122 
123  def value(self):
124  """value(IMP_EXAMPLE_SwigPyIterator self) -> PyObject *"""
125  return _IMP_example.IMP_EXAMPLE_SwigPyIterator_value(self)
126 
127 
128  def incr(self, n=1):
129  """
130  incr(IMP_EXAMPLE_SwigPyIterator self, size_t n=1) -> IMP_EXAMPLE_SwigPyIterator
131  incr(IMP_EXAMPLE_SwigPyIterator self) -> IMP_EXAMPLE_SwigPyIterator
132  """
133  return _IMP_example.IMP_EXAMPLE_SwigPyIterator_incr(self, n)
134 
135 
136  def decr(self, n=1):
137  """
138  decr(IMP_EXAMPLE_SwigPyIterator self, size_t n=1) -> IMP_EXAMPLE_SwigPyIterator
139  decr(IMP_EXAMPLE_SwigPyIterator self) -> IMP_EXAMPLE_SwigPyIterator
140  """
141  return _IMP_example.IMP_EXAMPLE_SwigPyIterator_decr(self, n)
142 
143 
144  def distance(self, x):
145  """distance(IMP_EXAMPLE_SwigPyIterator self, IMP_EXAMPLE_SwigPyIterator x) -> ptrdiff_t"""
146  return _IMP_example.IMP_EXAMPLE_SwigPyIterator_distance(self, x)
147 
148 
149  def equal(self, x):
150  """equal(IMP_EXAMPLE_SwigPyIterator self, IMP_EXAMPLE_SwigPyIterator x) -> bool"""
151  return _IMP_example.IMP_EXAMPLE_SwigPyIterator_equal(self, x)
152 
153 
154  def copy(self):
155  """copy(IMP_EXAMPLE_SwigPyIterator self) -> IMP_EXAMPLE_SwigPyIterator"""
156  return _IMP_example.IMP_EXAMPLE_SwigPyIterator_copy(self)
157 
158 
159  def next(self):
160  """next(IMP_EXAMPLE_SwigPyIterator self) -> PyObject *"""
161  return _IMP_example.IMP_EXAMPLE_SwigPyIterator_next(self)
162 
163 
164  def __next__(self):
165  """__next__(IMP_EXAMPLE_SwigPyIterator self) -> PyObject *"""
166  return _IMP_example.IMP_EXAMPLE_SwigPyIterator___next__(self)
167 
168 
169  def previous(self):
170  """previous(IMP_EXAMPLE_SwigPyIterator self) -> PyObject *"""
171  return _IMP_example.IMP_EXAMPLE_SwigPyIterator_previous(self)
172 
173 
174  def advance(self, n):
175  """advance(IMP_EXAMPLE_SwigPyIterator self, ptrdiff_t n) -> IMP_EXAMPLE_SwigPyIterator"""
176  return _IMP_example.IMP_EXAMPLE_SwigPyIterator_advance(self, n)
177 
178 
179  def __eq__(self, x):
180  """__eq__(IMP_EXAMPLE_SwigPyIterator self, IMP_EXAMPLE_SwigPyIterator x) -> bool"""
181  return _IMP_example.IMP_EXAMPLE_SwigPyIterator___eq__(self, x)
182 
183 
184  def __ne__(self, x):
185  """__ne__(IMP_EXAMPLE_SwigPyIterator self, IMP_EXAMPLE_SwigPyIterator x) -> bool"""
186  return _IMP_example.IMP_EXAMPLE_SwigPyIterator___ne__(self, x)
187 
188 
189  def __iadd__(self, n):
190  """__iadd__(IMP_EXAMPLE_SwigPyIterator self, ptrdiff_t n) -> IMP_EXAMPLE_SwigPyIterator"""
191  return _IMP_example.IMP_EXAMPLE_SwigPyIterator___iadd__(self, n)
192 
193 
194  def __isub__(self, n):
195  """__isub__(IMP_EXAMPLE_SwigPyIterator self, ptrdiff_t n) -> IMP_EXAMPLE_SwigPyIterator"""
196  return _IMP_example.IMP_EXAMPLE_SwigPyIterator___isub__(self, n)
197 
198 
199  def __add__(self, n):
200  """__add__(IMP_EXAMPLE_SwigPyIterator self, ptrdiff_t n) -> IMP_EXAMPLE_SwigPyIterator"""
201  return _IMP_example.IMP_EXAMPLE_SwigPyIterator___add__(self, n)
202 
203 
204  def __sub__(self, *args):
205  """
206  __sub__(IMP_EXAMPLE_SwigPyIterator self, ptrdiff_t n) -> IMP_EXAMPLE_SwigPyIterator
207  __sub__(IMP_EXAMPLE_SwigPyIterator self, IMP_EXAMPLE_SwigPyIterator x) -> ptrdiff_t
208  """
209  return _IMP_example.IMP_EXAMPLE_SwigPyIterator___sub__(self, *args)
210 
211  def __iter__(self):
212  return self
213 IMP_EXAMPLE_SwigPyIterator_swigregister = _IMP_example.IMP_EXAMPLE_SwigPyIterator_swigregister
214 IMP_EXAMPLE_SwigPyIterator_swigregister(IMP_EXAMPLE_SwigPyIterator)
215 
216 
217 _value_types=[]
218 _object_types=[]
219 _raii_types=[]
220 _plural_types=[]
221 
222 
223 _IMP_example.IMP_DEBUG_swigconstant(_IMP_example)
224 IMP_DEBUG = _IMP_example.IMP_DEBUG
225 
226 _IMP_example.IMP_RELEASE_swigconstant(_IMP_example)
227 IMP_RELEASE = _IMP_example.IMP_RELEASE
228 
229 _IMP_example.IMP_SILENT_swigconstant(_IMP_example)
230 IMP_SILENT = _IMP_example.IMP_SILENT
231 
232 _IMP_example.IMP_PROGRESS_swigconstant(_IMP_example)
233 IMP_PROGRESS = _IMP_example.IMP_PROGRESS
234 
235 _IMP_example.IMP_TERSE_swigconstant(_IMP_example)
236 IMP_TERSE = _IMP_example.IMP_TERSE
237 
238 _IMP_example.IMP_VERBOSE_swigconstant(_IMP_example)
239 IMP_VERBOSE = _IMP_example.IMP_VERBOSE
240 
241 _IMP_example.IMP_MEMORY_swigconstant(_IMP_example)
242 IMP_MEMORY = _IMP_example.IMP_MEMORY
243 
244 _IMP_example.IMP_NONE_swigconstant(_IMP_example)
245 IMP_NONE = _IMP_example.IMP_NONE
246 
247 _IMP_example.IMP_USAGE_swigconstant(_IMP_example)
248 IMP_USAGE = _IMP_example.IMP_USAGE
249 
250 _IMP_example.IMP_INTERNAL_swigconstant(_IMP_example)
251 IMP_INTERNAL = _IMP_example.IMP_INTERNAL
252 
253 _IMP_example.IMP_KERNEL_HAS_LOG4CXX_swigconstant(_IMP_example)
254 IMP_KERNEL_HAS_LOG4CXX = _IMP_example.IMP_KERNEL_HAS_LOG4CXX
255 
256 _IMP_example.IMP_COMPILER_HAS_AUTO_swigconstant(_IMP_example)
257 IMP_COMPILER_HAS_AUTO = _IMP_example.IMP_COMPILER_HAS_AUTO
258 
259 _IMP_example.IMP_COMPILER_HAS_DEBUG_VECTOR_swigconstant(_IMP_example)
260 IMP_COMPILER_HAS_DEBUG_VECTOR = _IMP_example.IMP_COMPILER_HAS_DEBUG_VECTOR
261 
262 _IMP_example.IMP_COMPILER_HAS_UNIQUE_PTR_swigconstant(_IMP_example)
263 IMP_COMPILER_HAS_UNIQUE_PTR = _IMP_example.IMP_COMPILER_HAS_UNIQUE_PTR
264 
265 _IMP_example.IMP_KERNEL_HAS_BOOST_RANDOM_swigconstant(_IMP_example)
266 IMP_KERNEL_HAS_BOOST_RANDOM = _IMP_example.IMP_KERNEL_HAS_BOOST_RANDOM
267 
268 _IMP_example.IMP_KERNEL_HAS_NUMPY_swigconstant(_IMP_example)
269 IMP_KERNEL_HAS_NUMPY = _IMP_example.IMP_KERNEL_HAS_NUMPY
270 
271 _IMP_example.IMP_KERNEL_HAS_GPERFTOOLS_swigconstant(_IMP_example)
272 IMP_KERNEL_HAS_GPERFTOOLS = _IMP_example.IMP_KERNEL_HAS_GPERFTOOLS
273 
274 _IMP_example.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER_swigconstant(_IMP_example)
275 IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER = _IMP_example.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER
276 
277 _IMP_example.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER_swigconstant(_IMP_example)
278 IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER = _IMP_example.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER
279 
280 _IMP_example.IMPKERNEL_SHOW_WARNINGS_swigconstant(_IMP_example)
281 IMPKERNEL_SHOW_WARNINGS = _IMP_example.IMPKERNEL_SHOW_WARNINGS
282 
283 import sys
284 class _DirectorObjects(object):
285  """@internal Simple class to keep references to director objects
286  to prevent premature deletion."""
287  def __init__(self):
288  self._objects = []
289  def register(self, obj):
290  """Take a reference to a director object; will only work for
291  refcounted C++ classes"""
292  if hasattr(obj, 'get_ref_count'):
293  self._objects.append(obj)
294  def cleanup(self):
295  """Only drop our reference and allow cleanup by Python if no other
296  Python references exist (we hold 3 references: one in self._objects,
297  one in x, and one in the argument list for getrefcount) *and* no
298  other C++ references exist (the Python object always holds one)"""
299  objs = [x for x in self._objects if sys.getrefcount(x) > 3 \
300  or x.get_ref_count() > 1]
301 # Do in two steps so the references are kept until the end of the
302 # function (deleting references may trigger a fresh call to this method)
303  self._objects = objs
304  def get_object_count(self):
305  """Get number of director objects (useful for testing only)"""
306  return len(self._objects)
307 _director_objects = _DirectorObjects()
308 
309 class _ostream(object):
310  """Proxy of C++ std::ostream class"""
311  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
312 
313  def __init__(self, *args, **kwargs):
314  raise AttributeError("No constructor defined")
315  __repr__ = _swig_repr
316 
317  def write(self, osa_buf):
318  """write(_ostream self, char const * osa_buf)"""
319  return _IMP_example._ostream_write(self, osa_buf)
320 
321 _ostream_swigregister = _IMP_example._ostream_swigregister
322 _ostream_swigregister(_ostream)
323 
324 
325 _IMP_example.IMP_COMPILER_HAS_OVERRIDE_swigconstant(_IMP_example)
326 IMP_COMPILER_HAS_OVERRIDE = _IMP_example.IMP_COMPILER_HAS_OVERRIDE
327 
328 _IMP_example.IMP_COMPILER_HAS_FINAL_swigconstant(_IMP_example)
329 IMP_COMPILER_HAS_FINAL = _IMP_example.IMP_COMPILER_HAS_FINAL
330 
331 _IMP_example.IMP_HAS_NOEXCEPT_swigconstant(_IMP_example)
332 IMP_HAS_NOEXCEPT = _IMP_example.IMP_HAS_NOEXCEPT
333 
334 _IMP_example.IMP_C_OPEN_BINARY_swigconstant(_IMP_example)
335 IMP_C_OPEN_BINARY = _IMP_example.IMP_C_OPEN_BINARY
336 import IMP
337 
338 _IMP_example.IMP_CGAL_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_example)
339 IMP_CGAL_HAS_BOOST_FILESYSTEM = _IMP_example.IMP_CGAL_HAS_BOOST_FILESYSTEM
340 
341 _IMP_example.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_example)
342 IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS = _IMP_example.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS
343 
344 _IMP_example.IMP_CGAL_HAS_BOOST_RANDOM_swigconstant(_IMP_example)
345 IMP_CGAL_HAS_BOOST_RANDOM = _IMP_example.IMP_CGAL_HAS_BOOST_RANDOM
346 
347 _IMP_example.IMP_CGAL_HAS_BOOST_SYSTEM_swigconstant(_IMP_example)
348 IMP_CGAL_HAS_BOOST_SYSTEM = _IMP_example.IMP_CGAL_HAS_BOOST_SYSTEM
349 
350 _IMP_example.IMP_CGAL_HAS_NUMPY_swigconstant(_IMP_example)
351 IMP_CGAL_HAS_NUMPY = _IMP_example.IMP_CGAL_HAS_NUMPY
352 
353 _IMP_example.IMPCGAL_SHOW_WARNINGS_swigconstant(_IMP_example)
354 IMPCGAL_SHOW_WARNINGS = _IMP_example.IMPCGAL_SHOW_WARNINGS
355 import IMP.cgal
356 
357 _IMP_example.IMP_ALGEBRA_HAS_IMP_CGAL_swigconstant(_IMP_example)
358 IMP_ALGEBRA_HAS_IMP_CGAL = _IMP_example.IMP_ALGEBRA_HAS_IMP_CGAL
359 
360 _IMP_example.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_example)
361 IMP_ALGEBRA_HAS_BOOST_FILESYSTEM = _IMP_example.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM
362 
363 _IMP_example.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_example)
364 IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS = _IMP_example.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS
365 
366 _IMP_example.IMP_ALGEBRA_HAS_BOOST_RANDOM_swigconstant(_IMP_example)
367 IMP_ALGEBRA_HAS_BOOST_RANDOM = _IMP_example.IMP_ALGEBRA_HAS_BOOST_RANDOM
368 
369 _IMP_example.IMP_ALGEBRA_HAS_BOOST_SYSTEM_swigconstant(_IMP_example)
370 IMP_ALGEBRA_HAS_BOOST_SYSTEM = _IMP_example.IMP_ALGEBRA_HAS_BOOST_SYSTEM
371 
372 _IMP_example.IMP_ALGEBRA_HAS_CGAL_swigconstant(_IMP_example)
373 IMP_ALGEBRA_HAS_CGAL = _IMP_example.IMP_ALGEBRA_HAS_CGAL
374 
375 _IMP_example.IMP_ALGEBRA_HAS_NUMPY_swigconstant(_IMP_example)
376 IMP_ALGEBRA_HAS_NUMPY = _IMP_example.IMP_ALGEBRA_HAS_NUMPY
377 
378 _IMP_example.IMP_ALGEBRA_HAS_ANN_swigconstant(_IMP_example)
379 IMP_ALGEBRA_HAS_ANN = _IMP_example.IMP_ALGEBRA_HAS_ANN
380 
381 _IMP_example.IMPALGEBRA_SHOW_WARNINGS_swigconstant(_IMP_example)
382 IMPALGEBRA_SHOW_WARNINGS = _IMP_example.IMPALGEBRA_SHOW_WARNINGS
383 import IMP.algebra
384 
385 _IMP_example.IMP_DISPLAY_HAS_IMP_CGAL_swigconstant(_IMP_example)
386 IMP_DISPLAY_HAS_IMP_CGAL = _IMP_example.IMP_DISPLAY_HAS_IMP_CGAL
387 
388 _IMP_example.IMP_DISPLAY_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_example)
389 IMP_DISPLAY_HAS_BOOST_FILESYSTEM = _IMP_example.IMP_DISPLAY_HAS_BOOST_FILESYSTEM
390 
391 _IMP_example.IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_example)
392 IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS = _IMP_example.IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS
393 
394 _IMP_example.IMP_DISPLAY_HAS_BOOST_RANDOM_swigconstant(_IMP_example)
395 IMP_DISPLAY_HAS_BOOST_RANDOM = _IMP_example.IMP_DISPLAY_HAS_BOOST_RANDOM
396 
397 _IMP_example.IMP_DISPLAY_HAS_BOOST_SYSTEM_swigconstant(_IMP_example)
398 IMP_DISPLAY_HAS_BOOST_SYSTEM = _IMP_example.IMP_DISPLAY_HAS_BOOST_SYSTEM
399 
400 _IMP_example.IMP_DISPLAY_HAS_CGAL_swigconstant(_IMP_example)
401 IMP_DISPLAY_HAS_CGAL = _IMP_example.IMP_DISPLAY_HAS_CGAL
402 
403 _IMP_example.IMP_DISPLAY_HAS_NUMPY_swigconstant(_IMP_example)
404 IMP_DISPLAY_HAS_NUMPY = _IMP_example.IMP_DISPLAY_HAS_NUMPY
405 
406 _IMP_example.IMPDISPLAY_SHOW_WARNINGS_swigconstant(_IMP_example)
407 IMPDISPLAY_SHOW_WARNINGS = _IMP_example.IMPDISPLAY_SHOW_WARNINGS
408 import IMP.display
409 
410 _IMP_example.IMP_SCORE_FUNCTOR_HAS_IMP_CGAL_swigconstant(_IMP_example)
411 IMP_SCORE_FUNCTOR_HAS_IMP_CGAL = _IMP_example.IMP_SCORE_FUNCTOR_HAS_IMP_CGAL
412 
413 _IMP_example.IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_example)
414 IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM = _IMP_example.IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM
415 
416 _IMP_example.IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_example)
417 IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS = _IMP_example.IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS
418 
419 _IMP_example.IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM_swigconstant(_IMP_example)
420 IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM = _IMP_example.IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM
421 
422 _IMP_example.IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM_swigconstant(_IMP_example)
423 IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM = _IMP_example.IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM
424 
425 _IMP_example.IMP_SCORE_FUNCTOR_HAS_CGAL_swigconstant(_IMP_example)
426 IMP_SCORE_FUNCTOR_HAS_CGAL = _IMP_example.IMP_SCORE_FUNCTOR_HAS_CGAL
427 
428 _IMP_example.IMP_SCORE_FUNCTOR_HAS_HDF5_swigconstant(_IMP_example)
429 IMP_SCORE_FUNCTOR_HAS_HDF5 = _IMP_example.IMP_SCORE_FUNCTOR_HAS_HDF5
430 
431 _IMP_example.IMP_SCORE_FUNCTOR_HAS_NUMPY_swigconstant(_IMP_example)
432 IMP_SCORE_FUNCTOR_HAS_NUMPY = _IMP_example.IMP_SCORE_FUNCTOR_HAS_NUMPY
433 
434 _IMP_example.IMPSCOREFUNCTOR_SHOW_WARNINGS_swigconstant(_IMP_example)
435 IMPSCOREFUNCTOR_SHOW_WARNINGS = _IMP_example.IMPSCOREFUNCTOR_SHOW_WARNINGS
436 import IMP.score_functor
437 
438 _IMP_example.IMP_STATISTICS_HAS_IMP_CGAL_swigconstant(_IMP_example)
439 IMP_STATISTICS_HAS_IMP_CGAL = _IMP_example.IMP_STATISTICS_HAS_IMP_CGAL
440 
441 _IMP_example.IMP_STATISTICS_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_example)
442 IMP_STATISTICS_HAS_BOOST_FILESYSTEM = _IMP_example.IMP_STATISTICS_HAS_BOOST_FILESYSTEM
443 
444 _IMP_example.IMP_STATISTICS_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_example)
445 IMP_STATISTICS_HAS_BOOST_PROGRAMOPTIONS = _IMP_example.IMP_STATISTICS_HAS_BOOST_PROGRAMOPTIONS
446 
447 _IMP_example.IMP_STATISTICS_HAS_BOOST_RANDOM_swigconstant(_IMP_example)
448 IMP_STATISTICS_HAS_BOOST_RANDOM = _IMP_example.IMP_STATISTICS_HAS_BOOST_RANDOM
449 
450 _IMP_example.IMP_STATISTICS_HAS_BOOST_SYSTEM_swigconstant(_IMP_example)
451 IMP_STATISTICS_HAS_BOOST_SYSTEM = _IMP_example.IMP_STATISTICS_HAS_BOOST_SYSTEM
452 
453 _IMP_example.IMP_STATISTICS_HAS_CGAL_swigconstant(_IMP_example)
454 IMP_STATISTICS_HAS_CGAL = _IMP_example.IMP_STATISTICS_HAS_CGAL
455 
456 _IMP_example.IMP_STATISTICS_HAS_NUMPY_swigconstant(_IMP_example)
457 IMP_STATISTICS_HAS_NUMPY = _IMP_example.IMP_STATISTICS_HAS_NUMPY
458 
459 _IMP_example.IMPSTATISTICS_SHOW_WARNINGS_swigconstant(_IMP_example)
460 IMPSTATISTICS_SHOW_WARNINGS = _IMP_example.IMPSTATISTICS_SHOW_WARNINGS
461 import IMP.statistics
462 
463 _IMP_example.IMP_CORE_HAS_IMP_CGAL_swigconstant(_IMP_example)
464 IMP_CORE_HAS_IMP_CGAL = _IMP_example.IMP_CORE_HAS_IMP_CGAL
465 
466 _IMP_example.IMP_CORE_HAS_IMP_KERNEL_swigconstant(_IMP_example)
467 IMP_CORE_HAS_IMP_KERNEL = _IMP_example.IMP_CORE_HAS_IMP_KERNEL
468 
469 _IMP_example.IMP_CORE_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_example)
470 IMP_CORE_HAS_BOOST_FILESYSTEM = _IMP_example.IMP_CORE_HAS_BOOST_FILESYSTEM
471 
472 _IMP_example.IMP_CORE_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_example)
473 IMP_CORE_HAS_BOOST_PROGRAMOPTIONS = _IMP_example.IMP_CORE_HAS_BOOST_PROGRAMOPTIONS
474 
475 _IMP_example.IMP_CORE_HAS_BOOST_RANDOM_swigconstant(_IMP_example)
476 IMP_CORE_HAS_BOOST_RANDOM = _IMP_example.IMP_CORE_HAS_BOOST_RANDOM
477 
478 _IMP_example.IMP_CORE_HAS_BOOST_SYSTEM_swigconstant(_IMP_example)
479 IMP_CORE_HAS_BOOST_SYSTEM = _IMP_example.IMP_CORE_HAS_BOOST_SYSTEM
480 
481 _IMP_example.IMP_CORE_HAS_CGAL_swigconstant(_IMP_example)
482 IMP_CORE_HAS_CGAL = _IMP_example.IMP_CORE_HAS_CGAL
483 
484 _IMP_example.IMP_CORE_HAS_HDF5_swigconstant(_IMP_example)
485 IMP_CORE_HAS_HDF5 = _IMP_example.IMP_CORE_HAS_HDF5
486 
487 _IMP_example.IMP_CORE_HAS_NUMPY_swigconstant(_IMP_example)
488 IMP_CORE_HAS_NUMPY = _IMP_example.IMP_CORE_HAS_NUMPY
489 
490 _IMP_example.IMPCORE_SHOW_WARNINGS_swigconstant(_IMP_example)
491 IMPCORE_SHOW_WARNINGS = _IMP_example.IMPCORE_SHOW_WARNINGS
492 import IMP.core
493 
494 _IMP_example.IMP_CONTAINER_HAS_IMP_ALGEBRA_swigconstant(_IMP_example)
495 IMP_CONTAINER_HAS_IMP_ALGEBRA = _IMP_example.IMP_CONTAINER_HAS_IMP_ALGEBRA
496 
497 _IMP_example.IMP_CONTAINER_HAS_IMP_CGAL_swigconstant(_IMP_example)
498 IMP_CONTAINER_HAS_IMP_CGAL = _IMP_example.IMP_CONTAINER_HAS_IMP_CGAL
499 
500 _IMP_example.IMP_CONTAINER_HAS_IMP_DISPLAY_swigconstant(_IMP_example)
501 IMP_CONTAINER_HAS_IMP_DISPLAY = _IMP_example.IMP_CONTAINER_HAS_IMP_DISPLAY
502 
503 _IMP_example.IMP_CONTAINER_HAS_IMP_KERNEL_swigconstant(_IMP_example)
504 IMP_CONTAINER_HAS_IMP_KERNEL = _IMP_example.IMP_CONTAINER_HAS_IMP_KERNEL
505 
506 _IMP_example.IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_example)
507 IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR = _IMP_example.IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR
508 
509 _IMP_example.IMP_CONTAINER_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_example)
510 IMP_CONTAINER_HAS_BOOST_FILESYSTEM = _IMP_example.IMP_CONTAINER_HAS_BOOST_FILESYSTEM
511 
512 _IMP_example.IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_example)
513 IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS = _IMP_example.IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS
514 
515 _IMP_example.IMP_CONTAINER_HAS_BOOST_RANDOM_swigconstant(_IMP_example)
516 IMP_CONTAINER_HAS_BOOST_RANDOM = _IMP_example.IMP_CONTAINER_HAS_BOOST_RANDOM
517 
518 _IMP_example.IMP_CONTAINER_HAS_BOOST_SYSTEM_swigconstant(_IMP_example)
519 IMP_CONTAINER_HAS_BOOST_SYSTEM = _IMP_example.IMP_CONTAINER_HAS_BOOST_SYSTEM
520 
521 _IMP_example.IMP_CONTAINER_HAS_CGAL_swigconstant(_IMP_example)
522 IMP_CONTAINER_HAS_CGAL = _IMP_example.IMP_CONTAINER_HAS_CGAL
523 
524 _IMP_example.IMP_CONTAINER_HAS_HDF5_swigconstant(_IMP_example)
525 IMP_CONTAINER_HAS_HDF5 = _IMP_example.IMP_CONTAINER_HAS_HDF5
526 
527 _IMP_example.IMP_CONTAINER_HAS_NUMPY_swigconstant(_IMP_example)
528 IMP_CONTAINER_HAS_NUMPY = _IMP_example.IMP_CONTAINER_HAS_NUMPY
529 
530 _IMP_example.IMP_CONTAINER_HAS_PYTHON_IHM_swigconstant(_IMP_example)
531 IMP_CONTAINER_HAS_PYTHON_IHM = _IMP_example.IMP_CONTAINER_HAS_PYTHON_IHM
532 
533 _IMP_example.IMP_CONTAINER_HAS_GOOGLE_DENSE_HASH_MAP_swigconstant(_IMP_example)
534 IMP_CONTAINER_HAS_GOOGLE_DENSE_HASH_MAP = _IMP_example.IMP_CONTAINER_HAS_GOOGLE_DENSE_HASH_MAP
535 
536 _IMP_example.IMP_CONTAINER_HAS_ROBIN_MAP_swigconstant(_IMP_example)
537 IMP_CONTAINER_HAS_ROBIN_MAP = _IMP_example.IMP_CONTAINER_HAS_ROBIN_MAP
538 
539 _IMP_example.IMPCONTAINER_SHOW_WARNINGS_swigconstant(_IMP_example)
540 IMPCONTAINER_SHOW_WARNINGS = _IMP_example.IMPCONTAINER_SHOW_WARNINGS
541 import IMP.container
542 
543 _IMP_example.IMP_ATOM_HAS_IMP_CGAL_swigconstant(_IMP_example)
544 IMP_ATOM_HAS_IMP_CGAL = _IMP_example.IMP_ATOM_HAS_IMP_CGAL
545 
546 _IMP_example.IMP_ATOM_HAS_IMP_KERNEL_swigconstant(_IMP_example)
547 IMP_ATOM_HAS_IMP_KERNEL = _IMP_example.IMP_ATOM_HAS_IMP_KERNEL
548 
549 _IMP_example.IMP_ATOM_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_example)
550 IMP_ATOM_HAS_IMP_SCORE_FUNCTOR = _IMP_example.IMP_ATOM_HAS_IMP_SCORE_FUNCTOR
551 
552 _IMP_example.IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_example)
553 IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS = _IMP_example.IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS
554 
555 _IMP_example.IMP_ATOM_HAS_BOOST_RANDOM_swigconstant(_IMP_example)
556 IMP_ATOM_HAS_BOOST_RANDOM = _IMP_example.IMP_ATOM_HAS_BOOST_RANDOM
557 
558 _IMP_example.IMP_ATOM_HAS_BOOST_REGEX_swigconstant(_IMP_example)
559 IMP_ATOM_HAS_BOOST_REGEX = _IMP_example.IMP_ATOM_HAS_BOOST_REGEX
560 
561 _IMP_example.IMP_ATOM_HAS_BOOST_SYSTEM_swigconstant(_IMP_example)
562 IMP_ATOM_HAS_BOOST_SYSTEM = _IMP_example.IMP_ATOM_HAS_BOOST_SYSTEM
563 
564 _IMP_example.IMP_ATOM_HAS_CGAL_swigconstant(_IMP_example)
565 IMP_ATOM_HAS_CGAL = _IMP_example.IMP_ATOM_HAS_CGAL
566 
567 _IMP_example.IMP_ATOM_HAS_HDF5_swigconstant(_IMP_example)
568 IMP_ATOM_HAS_HDF5 = _IMP_example.IMP_ATOM_HAS_HDF5
569 
570 _IMP_example.IMP_ATOM_HAS_NUMPY_swigconstant(_IMP_example)
571 IMP_ATOM_HAS_NUMPY = _IMP_example.IMP_ATOM_HAS_NUMPY
572 
573 _IMP_example.IMP_ATOM_HAS_PYTHON_IHM_swigconstant(_IMP_example)
574 IMP_ATOM_HAS_PYTHON_IHM = _IMP_example.IMP_ATOM_HAS_PYTHON_IHM
575 
576 _IMP_example.IMPATOM_SHOW_WARNINGS_swigconstant(_IMP_example)
577 IMPATOM_SHOW_WARNINGS = _IMP_example.IMPATOM_SHOW_WARNINGS
578 
579 _IMP_example.IMP_ATOM_TYPE_INDEX_swigconstant(_IMP_example)
580 IMP_ATOM_TYPE_INDEX = _IMP_example.IMP_ATOM_TYPE_INDEX
581 
582 _IMP_example.IMP_RESIDUE_TYPE_INDEX_swigconstant(_IMP_example)
583 IMP_RESIDUE_TYPE_INDEX = _IMP_example.IMP_RESIDUE_TYPE_INDEX
584 
585 _IMP_example.IMP_HIERARCHY_TYPE_INDEX_swigconstant(_IMP_example)
586 IMP_HIERARCHY_TYPE_INDEX = _IMP_example.IMP_HIERARCHY_TYPE_INDEX
587 
588 _IMP_example.IMP_CHAIN_TYPE_INDEX_swigconstant(_IMP_example)
589 IMP_CHAIN_TYPE_INDEX = _IMP_example.IMP_CHAIN_TYPE_INDEX
590 import IMP.atom
591 
592 _IMP_example.IMP_EM_HAS_IMP_CGAL_swigconstant(_IMP_example)
593 IMP_EM_HAS_IMP_CGAL = _IMP_example.IMP_EM_HAS_IMP_CGAL
594 
595 _IMP_example.IMP_EM_HAS_IMP_CONTAINER_swigconstant(_IMP_example)
596 IMP_EM_HAS_IMP_CONTAINER = _IMP_example.IMP_EM_HAS_IMP_CONTAINER
597 
598 _IMP_example.IMP_EM_HAS_IMP_DISPLAY_swigconstant(_IMP_example)
599 IMP_EM_HAS_IMP_DISPLAY = _IMP_example.IMP_EM_HAS_IMP_DISPLAY
600 
601 _IMP_example.IMP_EM_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_example)
602 IMP_EM_HAS_IMP_SCORE_FUNCTOR = _IMP_example.IMP_EM_HAS_IMP_SCORE_FUNCTOR
603 
604 _IMP_example.IMP_EM_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_example)
605 IMP_EM_HAS_BOOST_FILESYSTEM = _IMP_example.IMP_EM_HAS_BOOST_FILESYSTEM
606 
607 _IMP_example.IMP_EM_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_example)
608 IMP_EM_HAS_BOOST_PROGRAMOPTIONS = _IMP_example.IMP_EM_HAS_BOOST_PROGRAMOPTIONS
609 
610 _IMP_example.IMP_EM_HAS_BOOST_RANDOM_swigconstant(_IMP_example)
611 IMP_EM_HAS_BOOST_RANDOM = _IMP_example.IMP_EM_HAS_BOOST_RANDOM
612 
613 _IMP_example.IMP_EM_HAS_BOOST_REGEX_swigconstant(_IMP_example)
614 IMP_EM_HAS_BOOST_REGEX = _IMP_example.IMP_EM_HAS_BOOST_REGEX
615 
616 _IMP_example.IMP_EM_HAS_BOOST_SYSTEM_swigconstant(_IMP_example)
617 IMP_EM_HAS_BOOST_SYSTEM = _IMP_example.IMP_EM_HAS_BOOST_SYSTEM
618 
619 _IMP_example.IMP_EM_HAS_CGAL_swigconstant(_IMP_example)
620 IMP_EM_HAS_CGAL = _IMP_example.IMP_EM_HAS_CGAL
621 
622 _IMP_example.IMP_EM_HAS_HDF5_swigconstant(_IMP_example)
623 IMP_EM_HAS_HDF5 = _IMP_example.IMP_EM_HAS_HDF5
624 
625 _IMP_example.IMP_EM_HAS_NUMPY_swigconstant(_IMP_example)
626 IMP_EM_HAS_NUMPY = _IMP_example.IMP_EM_HAS_NUMPY
627 
628 _IMP_example.IMP_EM_HAS_PYTHON_IHM_swigconstant(_IMP_example)
629 IMP_EM_HAS_PYTHON_IHM = _IMP_example.IMP_EM_HAS_PYTHON_IHM
630 
631 _IMP_example.IMPEM_SHOW_WARNINGS_swigconstant(_IMP_example)
632 IMPEM_SHOW_WARNINGS = _IMP_example.IMPEM_SHOW_WARNINGS
633 import IMP.em
634 
635 _IMP_example.IMP_SAXS_HAS_IMP_CGAL_swigconstant(_IMP_example)
636 IMP_SAXS_HAS_IMP_CGAL = _IMP_example.IMP_SAXS_HAS_IMP_CGAL
637 
638 _IMP_example.IMP_SAXS_HAS_IMP_CONTAINER_swigconstant(_IMP_example)
639 IMP_SAXS_HAS_IMP_CONTAINER = _IMP_example.IMP_SAXS_HAS_IMP_CONTAINER
640 
641 _IMP_example.IMP_SAXS_HAS_IMP_DISPLAY_swigconstant(_IMP_example)
642 IMP_SAXS_HAS_IMP_DISPLAY = _IMP_example.IMP_SAXS_HAS_IMP_DISPLAY
643 
644 _IMP_example.IMP_SAXS_HAS_IMP_KERNEL_swigconstant(_IMP_example)
645 IMP_SAXS_HAS_IMP_KERNEL = _IMP_example.IMP_SAXS_HAS_IMP_KERNEL
646 
647 _IMP_example.IMP_SAXS_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_example)
648 IMP_SAXS_HAS_IMP_SCORE_FUNCTOR = _IMP_example.IMP_SAXS_HAS_IMP_SCORE_FUNCTOR
649 
650 _IMP_example.IMP_SAXS_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_example)
651 IMP_SAXS_HAS_BOOST_FILESYSTEM = _IMP_example.IMP_SAXS_HAS_BOOST_FILESYSTEM
652 
653 _IMP_example.IMP_SAXS_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_example)
654 IMP_SAXS_HAS_BOOST_PROGRAMOPTIONS = _IMP_example.IMP_SAXS_HAS_BOOST_PROGRAMOPTIONS
655 
656 _IMP_example.IMP_SAXS_HAS_BOOST_RANDOM_swigconstant(_IMP_example)
657 IMP_SAXS_HAS_BOOST_RANDOM = _IMP_example.IMP_SAXS_HAS_BOOST_RANDOM
658 
659 _IMP_example.IMP_SAXS_HAS_BOOST_REGEX_swigconstant(_IMP_example)
660 IMP_SAXS_HAS_BOOST_REGEX = _IMP_example.IMP_SAXS_HAS_BOOST_REGEX
661 
662 _IMP_example.IMP_SAXS_HAS_BOOST_SYSTEM_swigconstant(_IMP_example)
663 IMP_SAXS_HAS_BOOST_SYSTEM = _IMP_example.IMP_SAXS_HAS_BOOST_SYSTEM
664 
665 _IMP_example.IMP_SAXS_HAS_CGAL_swigconstant(_IMP_example)
666 IMP_SAXS_HAS_CGAL = _IMP_example.IMP_SAXS_HAS_CGAL
667 
668 _IMP_example.IMP_SAXS_HAS_HDF5_swigconstant(_IMP_example)
669 IMP_SAXS_HAS_HDF5 = _IMP_example.IMP_SAXS_HAS_HDF5
670 
671 _IMP_example.IMP_SAXS_HAS_NUMPY_swigconstant(_IMP_example)
672 IMP_SAXS_HAS_NUMPY = _IMP_example.IMP_SAXS_HAS_NUMPY
673 
674 _IMP_example.IMP_SAXS_HAS_PYTHON_IHM_swigconstant(_IMP_example)
675 IMP_SAXS_HAS_PYTHON_IHM = _IMP_example.IMP_SAXS_HAS_PYTHON_IHM
676 
677 _IMP_example.IMPSAXS_SHOW_WARNINGS_swigconstant(_IMP_example)
678 IMPSAXS_SHOW_WARNINGS = _IMP_example.IMPSAXS_SHOW_WARNINGS
679 import IMP.saxs
680 
681 _IMP_example.IMP_ISD_HAS_IMP_CGAL_swigconstant(_IMP_example)
682 IMP_ISD_HAS_IMP_CGAL = _IMP_example.IMP_ISD_HAS_IMP_CGAL
683 
684 _IMP_example.IMP_ISD_HAS_IMP_DISPLAY_swigconstant(_IMP_example)
685 IMP_ISD_HAS_IMP_DISPLAY = _IMP_example.IMP_ISD_HAS_IMP_DISPLAY
686 
687 _IMP_example.IMP_ISD_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_example)
688 IMP_ISD_HAS_IMP_SCORE_FUNCTOR = _IMP_example.IMP_ISD_HAS_IMP_SCORE_FUNCTOR
689 
690 _IMP_example.IMP_ISD_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_example)
691 IMP_ISD_HAS_BOOST_FILESYSTEM = _IMP_example.IMP_ISD_HAS_BOOST_FILESYSTEM
692 
693 _IMP_example.IMP_ISD_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_example)
694 IMP_ISD_HAS_BOOST_PROGRAMOPTIONS = _IMP_example.IMP_ISD_HAS_BOOST_PROGRAMOPTIONS
695 
696 _IMP_example.IMP_ISD_HAS_BOOST_RANDOM_swigconstant(_IMP_example)
697 IMP_ISD_HAS_BOOST_RANDOM = _IMP_example.IMP_ISD_HAS_BOOST_RANDOM
698 
699 _IMP_example.IMP_ISD_HAS_BOOST_REGEX_swigconstant(_IMP_example)
700 IMP_ISD_HAS_BOOST_REGEX = _IMP_example.IMP_ISD_HAS_BOOST_REGEX
701 
702 _IMP_example.IMP_ISD_HAS_BOOST_SYSTEM_swigconstant(_IMP_example)
703 IMP_ISD_HAS_BOOST_SYSTEM = _IMP_example.IMP_ISD_HAS_BOOST_SYSTEM
704 
705 _IMP_example.IMP_ISD_HAS_CGAL_swigconstant(_IMP_example)
706 IMP_ISD_HAS_CGAL = _IMP_example.IMP_ISD_HAS_CGAL
707 
708 _IMP_example.IMP_ISD_HAS_HDF5_swigconstant(_IMP_example)
709 IMP_ISD_HAS_HDF5 = _IMP_example.IMP_ISD_HAS_HDF5
710 
711 _IMP_example.IMP_ISD_HAS_NUMPY_swigconstant(_IMP_example)
712 IMP_ISD_HAS_NUMPY = _IMP_example.IMP_ISD_HAS_NUMPY
713 
714 _IMP_example.IMP_ISD_HAS_PYTHON_IHM_swigconstant(_IMP_example)
715 IMP_ISD_HAS_PYTHON_IHM = _IMP_example.IMP_ISD_HAS_PYTHON_IHM
716 
717 _IMP_example.IMPISD_SHOW_WARNINGS_swigconstant(_IMP_example)
718 IMPISD_SHOW_WARNINGS = _IMP_example.IMPISD_SHOW_WARNINGS
719 import IMP.isd
720 
721 _IMP_example.IMP_RMF_HAS_IMP_CGAL_swigconstant(_IMP_example)
722 IMP_RMF_HAS_IMP_CGAL = _IMP_example.IMP_RMF_HAS_IMP_CGAL
723 
724 _IMP_example.IMP_RMF_HAS_IMP_EM_swigconstant(_IMP_example)
725 IMP_RMF_HAS_IMP_EM = _IMP_example.IMP_RMF_HAS_IMP_EM
726 
727 _IMP_example.IMP_RMF_HAS_IMP_SAXS_swigconstant(_IMP_example)
728 IMP_RMF_HAS_IMP_SAXS = _IMP_example.IMP_RMF_HAS_IMP_SAXS
729 
730 _IMP_example.IMP_RMF_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_example)
731 IMP_RMF_HAS_IMP_SCORE_FUNCTOR = _IMP_example.IMP_RMF_HAS_IMP_SCORE_FUNCTOR
732 
733 _IMP_example.IMP_RMF_HAS_IMP_STATISTICS_swigconstant(_IMP_example)
734 IMP_RMF_HAS_IMP_STATISTICS = _IMP_example.IMP_RMF_HAS_IMP_STATISTICS
735 
736 _IMP_example.IMP_RMF_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_example)
737 IMP_RMF_HAS_BOOST_FILESYSTEM = _IMP_example.IMP_RMF_HAS_BOOST_FILESYSTEM
738 
739 _IMP_example.IMP_RMF_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_example)
740 IMP_RMF_HAS_BOOST_PROGRAMOPTIONS = _IMP_example.IMP_RMF_HAS_BOOST_PROGRAMOPTIONS
741 
742 _IMP_example.IMP_RMF_HAS_BOOST_RANDOM_swigconstant(_IMP_example)
743 IMP_RMF_HAS_BOOST_RANDOM = _IMP_example.IMP_RMF_HAS_BOOST_RANDOM
744 
745 _IMP_example.IMP_RMF_HAS_BOOST_REGEX_swigconstant(_IMP_example)
746 IMP_RMF_HAS_BOOST_REGEX = _IMP_example.IMP_RMF_HAS_BOOST_REGEX
747 
748 _IMP_example.IMP_RMF_HAS_BOOST_SYSTEM_swigconstant(_IMP_example)
749 IMP_RMF_HAS_BOOST_SYSTEM = _IMP_example.IMP_RMF_HAS_BOOST_SYSTEM
750 
751 _IMP_example.IMP_RMF_HAS_CGAL_swigconstant(_IMP_example)
752 IMP_RMF_HAS_CGAL = _IMP_example.IMP_RMF_HAS_CGAL
753 
754 _IMP_example.IMP_RMF_HAS_HDF5_swigconstant(_IMP_example)
755 IMP_RMF_HAS_HDF5 = _IMP_example.IMP_RMF_HAS_HDF5
756 
757 _IMP_example.IMP_RMF_HAS_NUMPY_swigconstant(_IMP_example)
758 IMP_RMF_HAS_NUMPY = _IMP_example.IMP_RMF_HAS_NUMPY
759 
760 _IMP_example.IMP_RMF_HAS_PYTHON_IHM_swigconstant(_IMP_example)
761 IMP_RMF_HAS_PYTHON_IHM = _IMP_example.IMP_RMF_HAS_PYTHON_IHM
762 
763 _IMP_example.IMPRMF_SHOW_WARNINGS_swigconstant(_IMP_example)
764 IMPRMF_SHOW_WARNINGS = _IMP_example.IMPRMF_SHOW_WARNINGS
765 import IMP.rmf
766 import RMF
767 
768 _IMP_example.IMP_DOMINO_HAS_IMP_ATOM_swigconstant(_IMP_example)
769 IMP_DOMINO_HAS_IMP_ATOM = _IMP_example.IMP_DOMINO_HAS_IMP_ATOM
770 
771 _IMP_example.IMP_DOMINO_HAS_IMP_CGAL_swigconstant(_IMP_example)
772 IMP_DOMINO_HAS_IMP_CGAL = _IMP_example.IMP_DOMINO_HAS_IMP_CGAL
773 
774 _IMP_example.IMP_DOMINO_HAS_IMP_EM_swigconstant(_IMP_example)
775 IMP_DOMINO_HAS_IMP_EM = _IMP_example.IMP_DOMINO_HAS_IMP_EM
776 
777 _IMP_example.IMP_DOMINO_HAS_IMP_ISD_swigconstant(_IMP_example)
778 IMP_DOMINO_HAS_IMP_ISD = _IMP_example.IMP_DOMINO_HAS_IMP_ISD
779 
780 _IMP_example.IMP_DOMINO_HAS_IMP_KERNEL_swigconstant(_IMP_example)
781 IMP_DOMINO_HAS_IMP_KERNEL = _IMP_example.IMP_DOMINO_HAS_IMP_KERNEL
782 
783 _IMP_example.IMP_DOMINO_HAS_IMP_RMF_swigconstant(_IMP_example)
784 IMP_DOMINO_HAS_IMP_RMF = _IMP_example.IMP_DOMINO_HAS_IMP_RMF
785 
786 _IMP_example.IMP_DOMINO_HAS_IMP_SAXS_swigconstant(_IMP_example)
787 IMP_DOMINO_HAS_IMP_SAXS = _IMP_example.IMP_DOMINO_HAS_IMP_SAXS
788 
789 _IMP_example.IMP_DOMINO_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_example)
790 IMP_DOMINO_HAS_IMP_SCORE_FUNCTOR = _IMP_example.IMP_DOMINO_HAS_IMP_SCORE_FUNCTOR
791 
792 _IMP_example.IMP_DOMINO_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_example)
793 IMP_DOMINO_HAS_BOOST_FILESYSTEM = _IMP_example.IMP_DOMINO_HAS_BOOST_FILESYSTEM
794 
795 _IMP_example.IMP_DOMINO_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_example)
796 IMP_DOMINO_HAS_BOOST_PROGRAMOPTIONS = _IMP_example.IMP_DOMINO_HAS_BOOST_PROGRAMOPTIONS
797 
798 _IMP_example.IMP_DOMINO_HAS_BOOST_RANDOM_swigconstant(_IMP_example)
799 IMP_DOMINO_HAS_BOOST_RANDOM = _IMP_example.IMP_DOMINO_HAS_BOOST_RANDOM
800 
801 _IMP_example.IMP_DOMINO_HAS_BOOST_REGEX_swigconstant(_IMP_example)
802 IMP_DOMINO_HAS_BOOST_REGEX = _IMP_example.IMP_DOMINO_HAS_BOOST_REGEX
803 
804 _IMP_example.IMP_DOMINO_HAS_BOOST_SYSTEM_swigconstant(_IMP_example)
805 IMP_DOMINO_HAS_BOOST_SYSTEM = _IMP_example.IMP_DOMINO_HAS_BOOST_SYSTEM
806 
807 _IMP_example.IMP_DOMINO_HAS_CGAL_swigconstant(_IMP_example)
808 IMP_DOMINO_HAS_CGAL = _IMP_example.IMP_DOMINO_HAS_CGAL
809 
810 _IMP_example.IMP_DOMINO_HAS_HDF5_swigconstant(_IMP_example)
811 IMP_DOMINO_HAS_HDF5 = _IMP_example.IMP_DOMINO_HAS_HDF5
812 
813 _IMP_example.IMP_DOMINO_HAS_NUMPY_swigconstant(_IMP_example)
814 IMP_DOMINO_HAS_NUMPY = _IMP_example.IMP_DOMINO_HAS_NUMPY
815 
816 _IMP_example.IMP_DOMINO_HAS_RMF_swigconstant(_IMP_example)
817 IMP_DOMINO_HAS_RMF = _IMP_example.IMP_DOMINO_HAS_RMF
818 
819 _IMP_example.IMP_DOMINO_HAS_PYTHON_IHM_swigconstant(_IMP_example)
820 IMP_DOMINO_HAS_PYTHON_IHM = _IMP_example.IMP_DOMINO_HAS_PYTHON_IHM
821 
822 _IMP_example.IMPDOMINO_SHOW_WARNINGS_swigconstant(_IMP_example)
823 IMPDOMINO_SHOW_WARNINGS = _IMP_example.IMPDOMINO_SHOW_WARNINGS
824 import RMF_HDF5
825 import IMP.domino
826 
827 _IMP_example.IMP_EXAMPLE_HAS_IMP_ALGEBRA_swigconstant(_IMP_example)
828 IMP_EXAMPLE_HAS_IMP_ALGEBRA = _IMP_example.IMP_EXAMPLE_HAS_IMP_ALGEBRA
829 
830 _IMP_example.IMP_EXAMPLE_HAS_IMP_CGAL_swigconstant(_IMP_example)
831 IMP_EXAMPLE_HAS_IMP_CGAL = _IMP_example.IMP_EXAMPLE_HAS_IMP_CGAL
832 
833 _IMP_example.IMP_EXAMPLE_HAS_IMP_DISPLAY_swigconstant(_IMP_example)
834 IMP_EXAMPLE_HAS_IMP_DISPLAY = _IMP_example.IMP_EXAMPLE_HAS_IMP_DISPLAY
835 
836 _IMP_example.IMP_EXAMPLE_HAS_IMP_EM_swigconstant(_IMP_example)
837 IMP_EXAMPLE_HAS_IMP_EM = _IMP_example.IMP_EXAMPLE_HAS_IMP_EM
838 
839 _IMP_example.IMP_EXAMPLE_HAS_IMP_ISD_swigconstant(_IMP_example)
840 IMP_EXAMPLE_HAS_IMP_ISD = _IMP_example.IMP_EXAMPLE_HAS_IMP_ISD
841 
842 _IMP_example.IMP_EXAMPLE_HAS_IMP_KERNEL_swigconstant(_IMP_example)
843 IMP_EXAMPLE_HAS_IMP_KERNEL = _IMP_example.IMP_EXAMPLE_HAS_IMP_KERNEL
844 
845 _IMP_example.IMP_EXAMPLE_HAS_IMP_RMF_swigconstant(_IMP_example)
846 IMP_EXAMPLE_HAS_IMP_RMF = _IMP_example.IMP_EXAMPLE_HAS_IMP_RMF
847 
848 _IMP_example.IMP_EXAMPLE_HAS_IMP_SAXS_swigconstant(_IMP_example)
849 IMP_EXAMPLE_HAS_IMP_SAXS = _IMP_example.IMP_EXAMPLE_HAS_IMP_SAXS
850 
851 _IMP_example.IMP_EXAMPLE_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_example)
852 IMP_EXAMPLE_HAS_IMP_SCORE_FUNCTOR = _IMP_example.IMP_EXAMPLE_HAS_IMP_SCORE_FUNCTOR
853 
854 _IMP_example.IMP_EXAMPLE_HAS_IMP_STATISTICS_swigconstant(_IMP_example)
855 IMP_EXAMPLE_HAS_IMP_STATISTICS = _IMP_example.IMP_EXAMPLE_HAS_IMP_STATISTICS
856 
857 _IMP_example.IMP_EXAMPLE_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_example)
858 IMP_EXAMPLE_HAS_BOOST_FILESYSTEM = _IMP_example.IMP_EXAMPLE_HAS_BOOST_FILESYSTEM
859 
860 _IMP_example.IMP_EXAMPLE_HAS_BOOST_GRAPH_swigconstant(_IMP_example)
861 IMP_EXAMPLE_HAS_BOOST_GRAPH = _IMP_example.IMP_EXAMPLE_HAS_BOOST_GRAPH
862 
863 _IMP_example.IMP_EXAMPLE_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_example)
864 IMP_EXAMPLE_HAS_BOOST_PROGRAMOPTIONS = _IMP_example.IMP_EXAMPLE_HAS_BOOST_PROGRAMOPTIONS
865 
866 _IMP_example.IMP_EXAMPLE_HAS_BOOST_RANDOM_swigconstant(_IMP_example)
867 IMP_EXAMPLE_HAS_BOOST_RANDOM = _IMP_example.IMP_EXAMPLE_HAS_BOOST_RANDOM
868 
869 _IMP_example.IMP_EXAMPLE_HAS_BOOST_REGEX_swigconstant(_IMP_example)
870 IMP_EXAMPLE_HAS_BOOST_REGEX = _IMP_example.IMP_EXAMPLE_HAS_BOOST_REGEX
871 
872 _IMP_example.IMP_EXAMPLE_HAS_BOOST_SYSTEM_swigconstant(_IMP_example)
873 IMP_EXAMPLE_HAS_BOOST_SYSTEM = _IMP_example.IMP_EXAMPLE_HAS_BOOST_SYSTEM
874 
875 _IMP_example.IMP_EXAMPLE_HAS_CGAL_swigconstant(_IMP_example)
876 IMP_EXAMPLE_HAS_CGAL = _IMP_example.IMP_EXAMPLE_HAS_CGAL
877 
878 _IMP_example.IMP_EXAMPLE_HAS_HDF5_swigconstant(_IMP_example)
879 IMP_EXAMPLE_HAS_HDF5 = _IMP_example.IMP_EXAMPLE_HAS_HDF5
880 
881 _IMP_example.IMP_EXAMPLE_HAS_NUMPY_swigconstant(_IMP_example)
882 IMP_EXAMPLE_HAS_NUMPY = _IMP_example.IMP_EXAMPLE_HAS_NUMPY
883 
884 _IMP_example.IMP_EXAMPLE_HAS_RMF_swigconstant(_IMP_example)
885 IMP_EXAMPLE_HAS_RMF = _IMP_example.IMP_EXAMPLE_HAS_RMF
886 
887 _IMP_example.IMP_EXAMPLE_HAS_PYTHON_IHM_swigconstant(_IMP_example)
888 IMP_EXAMPLE_HAS_PYTHON_IHM = _IMP_example.IMP_EXAMPLE_HAS_PYTHON_IHM
889 
890 _IMP_example.IMP_EXAMPLE_HAS_EXAMPLEDEPENDENCY_swigconstant(_IMP_example)
891 IMP_EXAMPLE_HAS_EXAMPLEDEPENDENCY = _IMP_example.IMP_EXAMPLE_HAS_EXAMPLEDEPENDENCY
892 
893 _IMP_example.IMPEXAMPLE_SHOW_WARNINGS_swigconstant(_IMP_example)
894 IMPEXAMPLE_SHOW_WARNINGS = _IMP_example.IMPEXAMPLE_SHOW_WARNINGS
895 
896 _object_types.append("ExampleRestraint")
897 
898 
899 def _object_cast_to_ExampleRestraint(o):
900  """_object_cast_to_ExampleRestraint(Object o) -> ExampleRestraint"""
901  return _IMP_example._object_cast_to_ExampleRestraint(o)
902 
903 def ExampleDecorators(l=[]):
904  return [ExampleDecorator(x) for x in l]
905 _plural_types.append("ExampleDecorators")
906 
907 
908 _value_types.append("ExampleDecorator")
909 
910 
911 _object_types.append("ExampleUnaryFunction")
912 
913 
914 def _object_cast_to_ExampleUnaryFunction(o):
915  """_object_cast_to_ExampleUnaryFunction(Object o) -> ExampleUnaryFunction"""
916  return _IMP_example._object_cast_to_ExampleUnaryFunction(o)
917 
918 _object_types.append("ExampleSingletonModifier")
919 
920 
921 def _object_cast_to_ExampleSingletonModifier(o):
922  """_object_cast_to_ExampleSingletonModifier(Object o) -> ExampleSingletonModifier"""
923  return _IMP_example._object_cast_to_ExampleSingletonModifier(o)
924 
925 _object_types.append("ExamplePairScore")
926 
927 
928 def _object_cast_to_ExamplePairScore(o):
929  """_object_cast_to_ExamplePairScore(Object o) -> ExamplePairScore"""
930  return _IMP_example._object_cast_to_ExamplePairScore(o)
931 
932 _object_types.append("ExampleSubsetFilterTable")
933 
934 
935 def _object_cast_to_ExampleSubsetFilterTable(o):
936  """_object_cast_to_ExampleSubsetFilterTable(Object o) -> ExampleSubsetFilterTable"""
937  return _IMP_example._object_cast_to_ExampleSubsetFilterTable(o)
938 
939 _object_types.append("ExampleConstraint")
940 
941 
942 def _object_cast_to_ExampleConstraint(o):
943  """_object_cast_to_ExampleConstraint(Object o) -> ExampleConstraint"""
944  return _IMP_example._object_cast_to_ExampleConstraint(o)
945 
946 _object_types.append("ExampleObject")
947 
948 
949 def _object_cast_to_ExampleObject(o):
950  """_object_cast_to_ExampleObject(Object o) -> ExampleObject"""
951  return _IMP_example._object_cast_to_ExampleObject(o)
952 
953 ExampleTemplateClass3Ds=list
954 _plural_types.append("ExampleTemplateClass3Ds")
955 _value_types.append("ExampleTemplateClass3D")
956 
957 
958 def create_model_and_particles():
959  m = IMP.Model()
960  sc = IMP.container.ListSingletonContainer(m)
961  b = IMP.algebra.BoundingBox3D(IMP.algebra.Vector3D(0,0,0),
962  IMP.algebra.Vector3D(10,10,10))
963  for i in range(0,100):
964  p = m.add_particle("p")
965  sc.add(p)
966  d = IMP.core.XYZR.setup_particle(m, p,
967  IMP.algebra.Sphere3D(IMP.algebra.get_random_vector_in(b), 1))
968  d.set_coordinates_are_optimized(True)
969  return (m, sc)
970 
971 
972 
973 class PythonExampleRestraint(IMP.Restraint):
974  """An example restraint written in Python.
975  This should be functionally equivalent to the C++ ExampleRestraint.
976  """
977  def __init__(self, m, p, k):
978  IMP.Restraint.__init__(self, m, "PythonExampleRestraint%1%")
979  self.p, self.k = p, k
980 
981  def do_add_score_and_derivatives(self, sa):
982  d = IMP.core.XYZ(self.get_model(), self.p)
983  score = .5 * self.k * d.get_z() * d.get_z()
984  if sa.get_derivative_accumulator():
985  deriv = self.k * d.get_z()
986  d.add_to_derivative(2, deriv, sa.get_derivative_accumulator())
987  sa.add_score(score)
988 
989  def do_get_inputs(self):
990  return [self.get_model().get_particle(self.p)]
991 
992 
993 
994 
995 class PythonExamplePairScore(IMP.PairScore):
996  """An example PairScore written in Python.
997  This should be functionally equivalent to the C++ ExamplePairScore.
998  """
999  def __init__(self, x0, k):
1000  IMP.PairScore.__init__(self)
1001  self.x0, self.k = x0, k
1002 
1003  def evaluate_index(self, m, pip, da):
1004  d0 = IMP.core.XYZ(m, pip[0])
1005  d1 = IMP.core.XYZ(m, pip[1])
1006  diff = (d0.get_coordinates()
1007  - d1.get_coordinates()).get_magnitude() - self.x0
1008  score = .5 * self.k * diff * diff
1009  if da:
1010 # derivatives are requested
1011  delta = d0.get_coordinates() - d1.get_coordinates()
1012  udelta = delta.get_unit_vector()
1013  dv = self.k * diff
1014  d0.add_to_derivatives(udelta * dv, da)
1015  d1.add_to_derivatives(-udelta * dv, da)
1016  return score
1017 
1018  def do_get_inputs(self, m, pis):
1019  return IMP.get_particles(m, pis)
1020 
1021 
1022 
1023 
1024 class PythonExampleUnaryFunction(IMP.UnaryFunction):
1025  """An example UnaryFunction written in Python.
1026  This should be functionally equivalent to the C++ ExampleUnaryFunction.
1027  """
1028  def __init__(self, center, k):
1029  IMP.UnaryFunction.__init__(self)
1030  self.center, self.k = center, k
1031 
1032  def evaluate_with_derivative(self, feature):
1033  return (self.evaluate(feature), self.k * (feature - self.center))
1034 
1035  def evaluate(self, feature):
1036  return .5 * self.k * (feature - self.center) * (feature - self.center)
1037 
1038 
1039 
1040 
1041 class PythonExampleConstraint(IMP.Constraint):
1042  """An example Constraint written in Python.
1043  This should be functionally equivalent to the C++ ExampleConstraint.
1044  """
1045 
1046  k = None
1047 
1048  def __init__(self, p):
1049  IMP.Constraint.__init__(self, p.get_model(), "ExampleConstraint%1%")
1050  self.p = p
1051  if self.k is None:
1052  PythonExampleConstraint.k = IMP.IntKey("Constraint key")
1053  if not p.has_attribute(self.k):
1054  p.add_attribute(self.k, 0)
1055 
1056  def do_update_attributes(self):
1057  self.p.set_value(self.k, self.p.get_value(self.k) + 1)
1058 
1059  def do_update_derivatives(self, da):
1060  pass
1061 
1062  def do_get_inputs(self):
1063  return [self.p]
1064 
1065  def do_get_outputs(self):
1066  return [self.p]
1067 
1068 
1069 
1070 
1071 class PythonExampleSingletonModifier(IMP.SingletonModifier):
1072  """An example SingletonModifier written in Python.
1073  This should be functionally equivalent to the C++
1074  ExampleSingletonModifier.
1075  """
1076 
1077  def __init__(self, bb):
1078  IMP.SingletonModifier.__init__(self, "ExampleSingletonModifier%1%")
1079  self.bb = bb
1080 
1081  def apply_index(self, m, pi):
1082  d = IMP.core.XYZ(m, pi)
1083  for i in range(3):
1084 # shift the coordinate until it is in the box
1085  while d.get_coordinate(i) < self.bb.get_corner(0)[i]:
1086  d.set_coordinate(i,d.get_coordinate(i) + \
1087  (self.bb.get_corner(1)[i] - self.bb.get_corner(0)[i]))
1088  while d.get_coordinate(i) > self.bb.get_corner(1)[i]:
1089  d.set_coordinate(i,d.get_coordinate(i) - \
1090  (self.bb.get_corner(1)[i] - self.bb.get_corner(0)[i]))
1091 
1092  def do_get_inputs(self, m, pis):
1093  return IMP.get_particles(m, pis)
1094 
1095  def do_get_outputs(self, m, pis):
1096  return self.do_get_inputs(m, pis)
1097 
1098 
1099 class ExampleRestraint(IMP.Restraint):
1100  """Proxy of C++ IMP::example::ExampleRestraint class"""
1101  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1102 
1103  def __init__(self, m, p, k):
1104  """__init__(IMP::example::ExampleRestraint self, Model m, ParticleIndex p, double k) -> ExampleRestraint"""
1105  this = _IMP_example.new_ExampleRestraint(m, p, k)
1106  try:
1107  self.this.append(this)
1108  except:
1109  self.this = this
1110 
1111  def do_add_score_and_derivatives(self, sa):
1112  """do_add_score_and_derivatives(ExampleRestraint self, ScoreAccumulator sa)"""
1113  return _IMP_example.ExampleRestraint_do_add_score_and_derivatives(self, sa)
1114 
1115 
1116  def do_get_inputs(self):
1117  """do_get_inputs(ExampleRestraint self) -> IMP::ModelObjectsTemp"""
1118  return _IMP_example.ExampleRestraint_do_get_inputs(self)
1119 
1120 
1121  def get_version_info(self):
1122  """get_version_info(ExampleRestraint self) -> VersionInfo"""
1123  return _IMP_example.ExampleRestraint_get_version_info(self)
1124 
1125 
1126  def __str__(self):
1127  """__str__(ExampleRestraint self) -> std::string"""
1128  return _IMP_example.ExampleRestraint___str__(self)
1129 
1130 
1131  def __repr__(self):
1132  """__repr__(ExampleRestraint self) -> std::string"""
1133  return _IMP_example.ExampleRestraint___repr__(self)
1134 
1135 
1136  @staticmethod
1137  def get_from(o):
1138  return _object_cast_to_ExampleRestraint(o)
1139 
1140 ExampleRestraint_swigregister = _IMP_example.ExampleRestraint_swigregister
1141 ExampleRestraint_swigregister(ExampleRestraint)
1142 
1143 class ExampleDecorator(IMP.Decorator):
1144  """Proxy of C++ IMP::example::ExampleDecorator class"""
1145  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1146 
1147  def get_decorator_name(self):
1148  """get_decorator_name(ExampleDecorator self) -> std::string"""
1149  return _IMP_example.ExampleDecorator_get_decorator_name(self)
1150 
1151 
1152  def set_decorator_name(self, nm):
1153  """set_decorator_name(ExampleDecorator self, std::string nm)"""
1154  return _IMP_example.ExampleDecorator_set_decorator_name(self, nm)
1155 
1156 
1157  def __init__(self, *args):
1158  """
1159  __init__(IMP::example::ExampleDecorator self) -> ExampleDecorator
1160  __init__(IMP::example::ExampleDecorator self, Model m, ParticleIndex id) -> ExampleDecorator
1161  __init__(IMP::example::ExampleDecorator self, _ParticleAdaptor d) -> ExampleDecorator
1162  """
1163  this = _IMP_example.new_ExampleDecorator(*args)
1164  try:
1165  self.this.append(this)
1166  except:
1167  self.this = this
1168 
1169  def get_is_setup(*args):
1170  """
1171  get_is_setup(Model m, ParticleIndex pi) -> bool
1172  get_is_setup(_ParticleAdaptor p) -> bool
1173  """
1174  return _IMP_example.ExampleDecorator_get_is_setup(*args)
1175 
1176  get_is_setup = staticmethod(get_is_setup)
1177 
1178  def show(self, *args):
1179  """
1180  show(ExampleDecorator self, _ostream out)
1181  show(ExampleDecorator self)
1182  """
1183  return _IMP_example.ExampleDecorator_show(self, *args)
1184 
1185 
1186  def setup_particle(*args):
1187  """
1188  setup_particle(Model m, ParticleIndex pi, std::string name) -> ExampleDecorator
1189  setup_particle(_ParticleAdaptor decorator, std::string name) -> ExampleDecorator
1190  """
1191  return _IMP_example.ExampleDecorator_setup_particle(*args)
1192 
1193  setup_particle = staticmethod(setup_particle)
1194 
1195  def add_attribute(self, *args):
1196  """
1197  add_attribute(ExampleDecorator self, FloatKey k, IMP::Float v, bool opt)
1198  add_attribute(ExampleDecorator self, FloatKey a0, IMP::Float a1)
1199  add_attribute(ExampleDecorator self, IntKey a0, IMP::Int a1)
1200  add_attribute(ExampleDecorator self, FloatsKey a0, IMP::Floats a1)
1201  add_attribute(ExampleDecorator self, IntsKey a0, IMP::Ints a1)
1202  add_attribute(ExampleDecorator self, StringKey a0, IMP::String a1)
1203  add_attribute(ExampleDecorator self, ParticleIndexKey a0, Particle a1)
1204  add_attribute(ExampleDecorator self, ObjectKey a0, Object a1)
1205  """
1206  return _IMP_example.ExampleDecorator_add_attribute(self, *args)
1207 
1208 
1209  def get_value(self, *args):
1210  """
1211  get_value(ExampleDecorator self, FloatKey a0) -> IMP::Float
1212  get_value(ExampleDecorator self, IntKey a0) -> IMP::Int
1213  get_value(ExampleDecorator self, FloatsKey a0) -> IMP::Floats
1214  get_value(ExampleDecorator self, IntsKey a0) -> IMP::Ints
1215  get_value(ExampleDecorator self, StringKey a0) -> IMP::String
1216  get_value(ExampleDecorator self, ParticleIndexKey a0) -> Particle
1217  get_value(ExampleDecorator self, ObjectKey a0) -> Object
1218  """
1219  return _IMP_example.ExampleDecorator_get_value(self, *args)
1220 
1221 
1222  def set_value(self, *args):
1223  """
1224  set_value(ExampleDecorator self, FloatKey a0, IMP::Float a1)
1225  set_value(ExampleDecorator self, IntKey a0, IMP::Int a1)
1226  set_value(ExampleDecorator self, FloatsKey a0, IMP::Floats a1)
1227  set_value(ExampleDecorator self, IntsKey a0, IMP::Ints a1)
1228  set_value(ExampleDecorator self, StringKey a0, IMP::String a1)
1229  set_value(ExampleDecorator self, ParticleIndexKey a0, Particle a1)
1230  set_value(ExampleDecorator self, ObjectKey a0, Object a1)
1231  """
1232  return _IMP_example.ExampleDecorator_set_value(self, *args)
1233 
1234 
1235  def remove_attribute(self, *args):
1236  """
1237  remove_attribute(ExampleDecorator self, FloatKey a0)
1238  remove_attribute(ExampleDecorator self, IntKey a0)
1239  remove_attribute(ExampleDecorator self, FloatsKey a0)
1240  remove_attribute(ExampleDecorator self, IntsKey a0)
1241  remove_attribute(ExampleDecorator self, StringKey a0)
1242  remove_attribute(ExampleDecorator self, ParticleIndexKey a0)
1243  remove_attribute(ExampleDecorator self, ObjectKey a0)
1244  """
1245  return _IMP_example.ExampleDecorator_remove_attribute(self, *args)
1246 
1247 
1248  def has_attribute(self, *args):
1249  """
1250  has_attribute(ExampleDecorator self, FloatKey a0) -> bool
1251  has_attribute(ExampleDecorator self, IntKey a0) -> bool
1252  has_attribute(ExampleDecorator self, FloatsKey a0) -> bool
1253  has_attribute(ExampleDecorator self, IntsKey a0) -> bool
1254  has_attribute(ExampleDecorator self, StringKey a0) -> bool
1255  has_attribute(ExampleDecorator self, ParticleIndexKey a0) -> bool
1256  has_attribute(ExampleDecorator self, ObjectKey a0) -> bool
1257  """
1258  return _IMP_example.ExampleDecorator_has_attribute(self, *args)
1259 
1260 
1261  def get_derivative(self, a0):
1262  """get_derivative(ExampleDecorator self, FloatKey a0) -> double"""
1263  return _IMP_example.ExampleDecorator_get_derivative(self, a0)
1264 
1265 
1266  def get_name(self):
1267  """get_name(ExampleDecorator self) -> std::string"""
1268  return _IMP_example.ExampleDecorator_get_name(self)
1269 
1270 
1271  def clear_caches(self):
1272  """clear_caches(ExampleDecorator self)"""
1273  return _IMP_example.ExampleDecorator_clear_caches(self)
1274 
1275 
1276  def set_name(self, a0):
1277  """set_name(ExampleDecorator self, std::string a0)"""
1278  return _IMP_example.ExampleDecorator_set_name(self, a0)
1279 
1280 
1281  def set_check_level(self, a0):
1282  """set_check_level(ExampleDecorator self, IMP::CheckLevel a0)"""
1283  return _IMP_example.ExampleDecorator_set_check_level(self, a0)
1284 
1285 
1286  def add_to_derivative(self, a0, a1, a2):
1287  """add_to_derivative(ExampleDecorator self, FloatKey a0, double a1, DerivativeAccumulator a2)"""
1288  return _IMP_example.ExampleDecorator_add_to_derivative(self, a0, a1, a2)
1289 
1290 
1291  def set_is_optimized(self, a0, a1):
1292  """set_is_optimized(ExampleDecorator self, FloatKey a0, bool a1)"""
1293  return _IMP_example.ExampleDecorator_set_is_optimized(self, a0, a1)
1294 
1295 
1296  def get_is_optimized(self, a0):
1297  """get_is_optimized(ExampleDecorator self, FloatKey a0) -> bool"""
1298  return _IMP_example.ExampleDecorator_get_is_optimized(self, a0)
1299 
1300 
1301  def get_check_level(self):
1302  """get_check_level(ExampleDecorator self) -> IMP::CheckLevel"""
1303  return _IMP_example.ExampleDecorator_get_check_level(self)
1304 
1305 
1306  def __eq__(self, *args):
1307  """
1308  __eq__(ExampleDecorator self, ExampleDecorator o) -> bool
1309  __eq__(ExampleDecorator self, Particle d) -> bool
1310  """
1311  return _IMP_example.ExampleDecorator___eq__(self, *args)
1312 
1313 
1314  def __ne__(self, *args):
1315  """
1316  __ne__(ExampleDecorator self, ExampleDecorator o) -> bool
1317  __ne__(ExampleDecorator self, Particle d) -> bool
1318  """
1319  return _IMP_example.ExampleDecorator___ne__(self, *args)
1320 
1321 
1322  def __le__(self, *args):
1323  """
1324  __le__(ExampleDecorator self, ExampleDecorator o) -> bool
1325  __le__(ExampleDecorator self, Particle d) -> bool
1326  """
1327  return _IMP_example.ExampleDecorator___le__(self, *args)
1328 
1329 
1330  def __lt__(self, *args):
1331  """
1332  __lt__(ExampleDecorator self, ExampleDecorator o) -> bool
1333  __lt__(ExampleDecorator self, Particle d) -> bool
1334  """
1335  return _IMP_example.ExampleDecorator___lt__(self, *args)
1336 
1337 
1338  def __ge__(self, *args):
1339  """
1340  __ge__(ExampleDecorator self, ExampleDecorator o) -> bool
1341  __ge__(ExampleDecorator self, Particle d) -> bool
1342  """
1343  return _IMP_example.ExampleDecorator___ge__(self, *args)
1344 
1345 
1346  def __gt__(self, *args):
1347  """
1348  __gt__(ExampleDecorator self, ExampleDecorator o) -> bool
1349  __gt__(ExampleDecorator self, Particle d) -> bool
1350  """
1351  return _IMP_example.ExampleDecorator___gt__(self, *args)
1352 
1353 
1354  def __hash__(self):
1355  """__hash__(ExampleDecorator self) -> std::size_t"""
1356  return _IMP_example.ExampleDecorator___hash__(self)
1357 
1358 
1359  def __str__(self):
1360  """__str__(ExampleDecorator self) -> std::string"""
1361  return _IMP_example.ExampleDecorator___str__(self)
1362 
1363 
1364  def __repr__(self):
1365  """__repr__(ExampleDecorator self) -> std::string"""
1366  return _IMP_example.ExampleDecorator___repr__(self)
1367 
1368  __swig_destroy__ = _IMP_example.delete_ExampleDecorator
1369  __del__ = lambda self: None
1370 ExampleDecorator_swigregister = _IMP_example.ExampleDecorator_swigregister
1371 ExampleDecorator_swigregister(ExampleDecorator)
1372 
1373 def ExampleDecorator_get_is_setup(*args):
1374  """
1375  get_is_setup(Model m, ParticleIndex pi) -> bool
1376  ExampleDecorator_get_is_setup(_ParticleAdaptor p) -> bool
1377  """
1378  return _IMP_example.ExampleDecorator_get_is_setup(*args)
1379 
1380 def ExampleDecorator_setup_particle(*args):
1381  """
1382  setup_particle(Model m, ParticleIndex pi, std::string name) -> ExampleDecorator
1383  ExampleDecorator_setup_particle(_ParticleAdaptor decorator, std::string name) -> ExampleDecorator
1384  """
1385  return _IMP_example.ExampleDecorator_setup_particle(*args)
1386 
1387 
1388 def __lshift__(out, n):
1389  """__lshift__(_ostream out, ExampleDecorator n) -> _ostream"""
1390  return _IMP_example.__lshift__(out, n)
1391 class ExampleUnaryFunction(IMP.UnaryFunction):
1392  """Proxy of C++ IMP::example::ExampleUnaryFunction class"""
1393  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1394 
1395  def __init__(self, center, k):
1396  """__init__(IMP::example::ExampleUnaryFunction self, IMP::Float center, IMP::Float k) -> ExampleUnaryFunction"""
1397  this = _IMP_example.new_ExampleUnaryFunction(center, k)
1398  try:
1399  self.this.append(this)
1400  except:
1401  self.this = this
1402 
1403  def get_version_info(self):
1404  """get_version_info(ExampleUnaryFunction self) -> VersionInfo"""
1405  return _IMP_example.ExampleUnaryFunction_get_version_info(self)
1406 
1407 
1408  def __str__(self):
1409  """__str__(ExampleUnaryFunction self) -> std::string"""
1410  return _IMP_example.ExampleUnaryFunction___str__(self)
1411 
1412 
1413  def __repr__(self):
1414  """__repr__(ExampleUnaryFunction self) -> std::string"""
1415  return _IMP_example.ExampleUnaryFunction___repr__(self)
1416 
1417 
1418  @staticmethod
1419  def get_from(o):
1420  return _object_cast_to_ExampleUnaryFunction(o)
1421 
1422 ExampleUnaryFunction_swigregister = _IMP_example.ExampleUnaryFunction_swigregister
1423 ExampleUnaryFunction_swigregister(ExampleUnaryFunction)
1424 
1425 class ExampleObject(IMP.Object):
1426  """Proxy of C++ IMP::example::ExampleObject class"""
1427  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1428 
1429  def __init__(self, data):
1430  """__init__(IMP::example::ExampleObject self, IMP::Floats const & data) -> ExampleObject"""
1431  this = _IMP_example.new_ExampleObject(data)
1432  try:
1433  self.this.append(this)
1434  except:
1435  self.this = this
1436 
1437  def get_data(self, i):
1438  """get_data(ExampleObject self, unsigned int i) -> double"""
1439  return _IMP_example.ExampleObject_get_data(self, i)
1440 
1441 
1442  def get_version_info(self):
1443  """get_version_info(ExampleObject self) -> VersionInfo"""
1444  return _IMP_example.ExampleObject_get_version_info(self)
1445 
1446 
1447  def __str__(self):
1448  """__str__(ExampleObject self) -> std::string"""
1449  return _IMP_example.ExampleObject___str__(self)
1450 
1451 
1452  def __repr__(self):
1453  """__repr__(ExampleObject self) -> std::string"""
1454  return _IMP_example.ExampleObject___repr__(self)
1455 
1456 
1457  @staticmethod
1458  def get_from(o):
1459  return _object_cast_to_ExampleObject(o)
1460 
1461 ExampleObject_swigregister = _IMP_example.ExampleObject_swigregister
1462 ExampleObject_swigregister(ExampleObject)
1463 
1464 class ExampleSingletonModifier(IMP.SingletonModifier):
1465  """Proxy of C++ IMP::example::ExampleSingletonModifier class"""
1466  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1467 
1468  def __init__(self, bb):
1469  """__init__(IMP::example::ExampleSingletonModifier self, BoundingBox3D bb) -> ExampleSingletonModifier"""
1470  this = _IMP_example.new_ExampleSingletonModifier(bb)
1471  try:
1472  self.this.append(this)
1473  except:
1474  self.this = this
1475 
1476  def do_get_inputs(self, m, pis):
1477  """do_get_inputs(ExampleSingletonModifier self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
1478  return _IMP_example.ExampleSingletonModifier_do_get_inputs(self, m, pis)
1479 
1480 
1481  def do_get_outputs(self, m, pis):
1482  """do_get_outputs(ExampleSingletonModifier self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
1483  return _IMP_example.ExampleSingletonModifier_do_get_outputs(self, m, pis)
1484 
1485 
1486  def get_version_info(self):
1487  """get_version_info(ExampleSingletonModifier self) -> VersionInfo"""
1488  return _IMP_example.ExampleSingletonModifier_get_version_info(self)
1489 
1490 
1491  def __str__(self):
1492  """__str__(ExampleSingletonModifier self) -> std::string"""
1493  return _IMP_example.ExampleSingletonModifier___str__(self)
1494 
1495 
1496  def __repr__(self):
1497  """__repr__(ExampleSingletonModifier self) -> std::string"""
1498  return _IMP_example.ExampleSingletonModifier___repr__(self)
1499 
1500 
1501  @staticmethod
1502  def get_from(o):
1503  return _object_cast_to_ExampleSingletonModifier(o)
1504 
1505 ExampleSingletonModifier_swigregister = _IMP_example.ExampleSingletonModifier_swigregister
1506 ExampleSingletonModifier_swigregister(ExampleSingletonModifier)
1507 
1508 class ExamplePairScore(IMP.PairScore):
1509  """Proxy of C++ IMP::example::ExamplePairScore class"""
1510  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1511 
1512  def __init__(self, x0, k):
1513  """__init__(IMP::example::ExamplePairScore self, double x0, double k) -> ExamplePairScore"""
1514  this = _IMP_example.new_ExamplePairScore(x0, k)
1515  try:
1516  self.this.append(this)
1517  except:
1518  self.this = this
1519 
1520  def do_get_inputs(self, m, pis):
1521  """do_get_inputs(ExamplePairScore self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
1522  return _IMP_example.ExamplePairScore_do_get_inputs(self, m, pis)
1523 
1524 
1525  def get_version_info(self):
1526  """get_version_info(ExamplePairScore self) -> VersionInfo"""
1527  return _IMP_example.ExamplePairScore_get_version_info(self)
1528 
1529 
1530  def __str__(self):
1531  """__str__(ExamplePairScore self) -> std::string"""
1532  return _IMP_example.ExamplePairScore___str__(self)
1533 
1534 
1535  def __repr__(self):
1536  """__repr__(ExamplePairScore self) -> std::string"""
1537  return _IMP_example.ExamplePairScore___repr__(self)
1538 
1539 
1540  @staticmethod
1541  def get_from(o):
1542  return _object_cast_to_ExamplePairScore(o)
1543 
1544 ExamplePairScore_swigregister = _IMP_example.ExamplePairScore_swigregister
1545 ExamplePairScore_swigregister(ExamplePairScore)
1546 
1547 class ExampleSubsetFilterTable(IMP.domino.SubsetFilterTable):
1548  """Proxy of C++ IMP::example::ExampleSubsetFilterTable class"""
1549  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1550 
1551  def __init__(self, max_diff, pt):
1552  """__init__(IMP::example::ExampleSubsetFilterTable self, unsigned int max_diff, IMP::ParticlesTemp const & pt) -> ExampleSubsetFilterTable"""
1553  this = _IMP_example.new_ExampleSubsetFilterTable(max_diff, pt)
1554  try:
1555  self.this.append(this)
1556  except:
1557  self.this = this
1558 
1559  def get_version_info(self):
1560  """get_version_info(ExampleSubsetFilterTable self) -> VersionInfo"""
1561  return _IMP_example.ExampleSubsetFilterTable_get_version_info(self)
1562 
1563 
1564  def __str__(self):
1565  """__str__(ExampleSubsetFilterTable self) -> std::string"""
1566  return _IMP_example.ExampleSubsetFilterTable___str__(self)
1567 
1568 
1569  def __repr__(self):
1570  """__repr__(ExampleSubsetFilterTable self) -> std::string"""
1571  return _IMP_example.ExampleSubsetFilterTable___repr__(self)
1572 
1573 
1574  @staticmethod
1575  def get_from(o):
1576  return _object_cast_to_ExampleSubsetFilterTable(o)
1577 
1578 ExampleSubsetFilterTable_swigregister = _IMP_example.ExampleSubsetFilterTable_swigregister
1579 ExampleSubsetFilterTable_swigregister(ExampleSubsetFilterTable)
1580 
1581 class ExampleConstraint(IMP.Constraint):
1582  """Proxy of C++ IMP::example::ExampleConstraint class"""
1583  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1584 
1585  def __init__(self, p):
1586  """__init__(IMP::example::ExampleConstraint self, Particle p) -> ExampleConstraint"""
1587  this = _IMP_example.new_ExampleConstraint(p)
1588  try:
1589  self.this.append(this)
1590  except:
1591  self.this = this
1592 
1593  def do_get_inputs(self):
1594  """do_get_inputs(ExampleConstraint self) -> IMP::ModelObjectsTemp"""
1595  return _IMP_example.ExampleConstraint_do_get_inputs(self)
1596 
1597 
1598  def do_get_outputs(self):
1599  """do_get_outputs(ExampleConstraint self) -> IMP::ModelObjectsTemp"""
1600  return _IMP_example.ExampleConstraint_do_get_outputs(self)
1601 
1602 
1603  def get_key():
1604  """get_key() -> IntKey"""
1605  return _IMP_example.ExampleConstraint_get_key()
1606 
1607  get_key = staticmethod(get_key)
1608 
1609  def get_version_info(self):
1610  """get_version_info(ExampleConstraint self) -> VersionInfo"""
1611  return _IMP_example.ExampleConstraint_get_version_info(self)
1612 
1613 
1614  def __str__(self):
1615  """__str__(ExampleConstraint self) -> std::string"""
1616  return _IMP_example.ExampleConstraint___str__(self)
1617 
1618 
1619  def __repr__(self):
1620  """__repr__(ExampleConstraint self) -> std::string"""
1621  return _IMP_example.ExampleConstraint___repr__(self)
1622 
1623 
1624  @staticmethod
1625  def get_from(o):
1626  return _object_cast_to_ExampleConstraint(o)
1627 
1628 ExampleConstraint_swigregister = _IMP_example.ExampleConstraint_swigregister
1629 ExampleConstraint_swigregister(ExampleConstraint)
1630 
1631 def ExampleConstraint_get_key():
1632  """ExampleConstraint_get_key() -> IntKey"""
1633  return _IMP_example.ExampleConstraint_get_key()
1634 
1635 
1636 def create_serial_mover(m, pis):
1637  """create_serial_mover(Model m, IMP::ParticleIndexes const & pis) -> MonteCarloMover"""
1638  return _IMP_example.create_serial_mover(m, pis)
1639 
1640 def optimize_balls(*args):
1641  """
1642  optimize_balls(Model m, IMP::ParticleIndexes const & pis, IMP::RestraintsTemp const & rs, IMP::PairPredicates const & excluded, IMP::OptimizerStates const & opt_states, IMP::LogLevel ll)
1643  optimize_balls(Model m, IMP::ParticleIndexes const & pis, IMP::RestraintsTemp const & rs, IMP::PairPredicates const & excluded, IMP::OptimizerStates const & opt_states)
1644  optimize_balls(Model m, IMP::ParticleIndexes const & pis, IMP::RestraintsTemp const & rs, IMP::PairPredicates const & excluded)
1645  optimize_balls(Model m, IMP::ParticleIndexes const & pis, IMP::RestraintsTemp const & rs)
1646  optimize_balls(Model m, IMP::ParticleIndexes const & pis)
1647  """
1648  return _IMP_example.optimize_balls(*args)
1649 
1650 def optimize_assembly(*args):
1651  """
1652  optimize_assembly(Model m, IMP::ParticleIndexes const & components, IMP::RestraintsTemp const & interactions, IMP::RestraintsTemp const & other_restraints, BoundingBox3D bb, PairScore ev, double cutoff, IMP::PairPredicates const & excluded)
1653  optimize_assembly(Model m, IMP::ParticleIndexes const & components, IMP::RestraintsTemp const & interactions, IMP::RestraintsTemp const & other_restraints, BoundingBox3D bb, PairScore ev, double cutoff)
1654  """
1655  return _IMP_example.optimize_assembly(*args)
1656 
1657 def get_number_of_incidences(psa, psb, point_distance):
1658  """get_number_of_incidences(IMP::ParticlesTemp const & psa, IMP::ParticlesTemp const & psb, double point_distance) -> unsigned int"""
1659  return _IMP_example.get_number_of_incidences(psa, psb, point_distance)
1660 
1661 def create_chain_restraint(m, ps, length_factor, k, name):
1662  """create_chain_restraint(Model m, IMP::ParticleIndexes const & ps, double length_factor, double k, std::string name) -> Restraint"""
1663  return _IMP_example.create_chain_restraint(m, ps, length_factor, k, name)
1664 
1665 def create_excluded_volume(m, ps, k, name):
1666  """create_excluded_volume(Model m, IMP::ParticleIndexes const & ps, double k, std::string name) -> Restraint"""
1667  return _IMP_example.create_excluded_volume(m, ps, k, name)
1668 class ExampleTemplateClass3D(object):
1669  """Proxy of C++ IMP::example::ExampleTemplateClassD<(3)> class"""
1670  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1671 
1672  def __init__(self, *args):
1673  """
1674  __init__(IMP::example::ExampleTemplateClassD<(3)> self) -> ExampleTemplateClass3D
1675  __init__(IMP::example::ExampleTemplateClassD<(3)> self, Vector3D a, Vector3D b) -> ExampleTemplateClass3D
1676  """
1677  this = _IMP_example.new_ExampleTemplateClass3D(*args)
1678  try:
1679  self.this.append(this)
1680  except:
1681  self.this = this
1682 
1683  def get_point(self, i):
1684  """get_point(ExampleTemplateClass3D self, unsigned int i) -> Vector3D"""
1685  return _IMP_example.ExampleTemplateClass3D_get_point(self, i)
1686 
1687 
1688  def show(self, *args):
1689  """
1690  show(ExampleTemplateClass3D self, _ostream out)
1691  show(ExampleTemplateClass3D self)
1692  """
1693  return _IMP_example.ExampleTemplateClass3D_show(self, *args)
1694 
1695 
1696  def __str__(self):
1697  """__str__(ExampleTemplateClass3D self) -> std::string"""
1698  return _IMP_example.ExampleTemplateClass3D___str__(self)
1699 
1700 
1701  def __repr__(self):
1702  """__repr__(ExampleTemplateClass3D self) -> std::string"""
1703  return _IMP_example.ExampleTemplateClass3D___repr__(self)
1704 
1705  __swig_destroy__ = _IMP_example.delete_ExampleTemplateClass3D
1706  __del__ = lambda self: None
1707 ExampleTemplateClass3D_swigregister = _IMP_example.ExampleTemplateClass3D_swigregister
1708 ExampleTemplateClass3D_swigregister(ExampleTemplateClass3D)
1709 
1710 
1711 def get_module_version():
1712  """get_module_version() -> std::string const"""
1713  return _IMP_example.get_module_version()
1714 
1715 def get_example_path(fname):
1716  """get_example_path(std::string fname) -> std::string"""
1717  return _IMP_example.get_example_path(fname)
1718 
1719 def get_data_path(fname):
1720  """get_data_path(std::string fname) -> std::string"""
1721  return _IMP_example.get_data_path(fname)
1722 
1723 from . import _version_check
1724 _version_check.check_version(get_module_version())
1725 __version__ = get_module_version()
1726 
1727 
1728 
IMP::example::get_number_of_incidences
unsigned int get_number_of_incidences(const ParticlesTemp &psa, const ParticlesTemp &psb, double point_distance)
Definition: counting.h:23
IMP::SingletonModifier
A base class for modifiers of ParticlesTemp.
Definition: SingletonModifier.h:32
IMP::PairScore
Abstract class for scoring object(s) of type ParticleIndexPair.
Definition: PairScore.h:37
IMP::UnaryFunction::evaluate
virtual double evaluate(double feature) const
Calculate score with respect to the given feature.
Definition: UnaryFunction.h:33
IMP::example.PythonExamplePairScore
An example PairScore written in Python.
Definition: example/__init__.py:995
IMP::example.PythonExampleSingletonModifier
An example SingletonModifier written in Python.
Definition: example/__init__.py:1071
IMP::container
Various classes to hold sets of particles.
IMP::core::XYZR::setup_particle
static XYZR setup_particle(Model *m, ParticleIndex pi)
Definition: XYZR.h:48
IMP::example.PythonExampleUnaryFunction
An example UnaryFunction written in Python.
Definition: example/__init__.py:1024
IMP::Restraint::do_add_score_and_derivatives
virtual void do_add_score_and_derivatives(ScoreAccumulator sa) const
A restraint should override this to compute the score and derivatives.
IMP::cgal
Make CGAL functionality available to IMP.
IMP::example::ExampleTemplateClassD
A line segment templated on the dimension.
Definition: ExampleTemplateClass.h:32
IMP::get_particles
ParticlesTemp get_particles(Model *m, const ParticleIndexes &ps)
Get the particles from a list of indexes.
IMP::Object::clear_caches
virtual void clear_caches()
Definition: Object.h:227
IMP::ParticleOutputs::do_get_outputs
virtual ModelObjectsTemp do_get_outputs(Model *m, const ParticleIndexes &pis) const =0
Overload this method to specify the outputs.
IMP::score_functor
Composable functors to implement scores via compile-time composition.
IMP::example::create_excluded_volume
Restraint * create_excluded_volume(Model *m, const ParticleIndexes &ps, double k, std::string name)
Definition: creating_restraints.h:50
IMP::algebra::get_random_vector_in
Vector3D get_random_vector_in(const Cylinder3D &c)
Generate a random vector in a cylinder with uniform density.
IMP::example::create_serial_mover
core::MonteCarloMover * create_serial_mover(Model *m, const ParticleIndexes &pis)
IMP::statistics
Code to compute statistical measures.
IMP::Constraint
Implement a constraint on the Model.
Definition: Constraint.h:49
IMP::Model
Class for storing model, its restraints, constraints, and particles.
Definition: Model.h:72
IMP::example::ExampleObject
An example simple object which is reference counted.
Definition: ExampleObject.h:29
IMP::example::ExampleDecorator
A simple decorator which adds a name to a particle.
Definition: ExampleDecorator.h:32
IMP::example.PythonExampleConstraint
An example Constraint written in Python.
Definition: example/__init__.py:1041
IMP::Object
Common base class for heavy weight IMP objects.
Definition: Object.h:106
IMP::container::ListSingletonContainer
Store a list of ParticleIndexes.
Definition: ListSingletonContainer.h:33
IMP::example.PythonExampleRestraint
An example restraint written in Python.
Definition: example/__init__.py:973
IMP::ParticleInputs::do_get_inputs
virtual ModelObjectsTemp do_get_inputs(Model *m, const ParticleIndexes &pis) const =0
Overload this method to specify the inputs.
IMP::example::optimize_balls
void optimize_balls(Model *m, const ParticleIndexes &pis, const RestraintsTemp &rs=RestraintsTemp(), const PairPredicates &excluded=PairPredicates(), const OptimizerStates &opt_states=OptimizerStates(), LogLevel ll=DEFAULT)
IMP::example::ExampleRestraint
Restrain a particle to be in the x,y plane.
Definition: ExampleRestraint.h:25
IMP::example::optimize_assembly
void optimize_assembly(Model *m, const ParticleIndexes &components, const RestraintsTemp &interactions, const RestraintsTemp &other_restraints, const algebra::BoundingBox3D &bb, PairScore *ev, double cutoff, const PairPredicates &excluded=PairPredicates())
IMP::em
Basic utilities for handling cryo-electron microscopy 3D density maps.
IMP::core::XYZ
A decorator for a particle with x,y,z coordinates.
Definition: XYZ.h:30
IMP::Decorator
Interface to specialized Particle types (e.g. atoms)
Definition: Decorator.h:118
IMP::ModelObject::do_get_outputs
virtual ModelObjectsTemp do_get_outputs() const =0
IMP::core
Basic functionality that is expected to be used by a wide variety of IMP users.
IMP::algebra
General purpose algebraic and geometric methods that are expected to be used by a wide variety of IMP...
IMP::SingletonModifier::apply_index
virtual void apply_index(Model *m, ParticleIndex v) const =0
IMP::example::get_module_version
std::string get_module_version()
Return the version of this module, as a string.
Definition: EMageFit/__init__.py:5
IMP::Object::get_version_info
virtual VersionInfo get_version_info() const
Get information about the module and version of the object.
Definition: Object.h:173
IMP::UnaryFunction::evaluate_with_derivative
virtual DerivativePair evaluate_with_derivative(double feature) const
Calculate score and derivative with respect to the given feature.
Definition: UnaryFunction.h:48
IMP::algebra::Vector3D
VectorD< 3 > Vector3D
Definition: VectorD.h:421
IMP::Object::set_check_level
void set_check_level(CheckLevel l)
IMP::example::ExamplePairScore
Apply a harmonic to the distance between two particles.
Definition: ExamplePairScore.h:25
IMP::example::create_chain_restraint
Restraint * create_chain_restraint(Model *m, const ParticleIndexes &ps, double length_factor, double k, std::string name)
Definition: creating_restraints.h:31
IMP::example::get_example_path
std::string get_example_path(std::string file_name)
Return the full path to one of this module's example files.
IMP::ModelObject::get_model
Model * get_model() const
Definition: ModelObject.h:42
IMP::example::ExampleConstraint
A trivial constraint that just increments a counter.
Definition: ExampleConstraint.h:23
IMP::display
Output IMP model data in various file formats.
IMP::atom
Functionality for loading, creating, manipulating and scoring atomic structures.
IMP::example::get_data_path
std::string get_data_path(std::string file_name)
Return the full path to one of this module's data files.
IMP::rmf
Support for the RMF file format for storing hierarchical molecular data and markup.
IMP::UnaryFunction
Abstract single variable functor class for score functions.
Definition: UnaryFunction.h:25
IMP::ModelObject::do_get_inputs
virtual ModelObjectsTemp do_get_inputs() const =0
IMP::domino
Divide-and-conquer inferential optimization in discrete space.
IMP::PairScore::evaluate_index
virtual double evaluate_index(Model *m, const ParticleIndexPair &vt, DerivativeAccumulator *da) const =0
Compute the score and the derivative if needed.
IMP::saxs
Support for small angle X-ray scattering (SAXS) data.
IMP::isd
Inferential scoring building on methods developed as part of the Inferential Structure Determination ...
IMP::Restraint
A restraint is a term in an IMP ScoringFunction.
Definition: Restraint.h:54