IMP::atom::Bonded Class Reference

A decorator for a particle which has bonds. More...

#include <IMP/atom/bond_decorators.h>

Inheritance diagram for IMP::atom::Bonded:

Detailed Description

A decorator for a particle which has bonds.

See Also

Bond

Definition at line 89 of file bond_decorators.h.

Public Member Functions
	Bonded (::IMP::Model *m,::IMP::ParticleIndex id)
	Bonded (const IMP::ParticleAdaptor &d)
Bond	get_bond (unsigned int i) const
	Get a Bond of the ith bond. More...
ParticleIndexes	get_bond_indexes () const
Bonded	get_bonded (unsigned int i) const
	Get a Bonded of the ith bonded particle. More...
unsigned int	get_number_of_bonds () const
void	show (std::ostream &out=std::cout) const
Public Member Functions inherited from IMP::Decorator
bool	get_is_valid () const
	Returns true if constructed with a non-default constructor. More...
Model *	get_model () const
	Returns the Model containing the particle. More...
Particle *	get_particle () const
	Returns the particle decorated by this decorator. More...
ParticleIndex	get_particle_index () const
	Returns the particle index decorated by this decorator. More...
	operator Particle * () const
	operator ParticleIndex () const
Particle *	operator-> () const

Static Public Member Functions
static bool	get_is_setup (const IMP::ParticleAdaptor &p)
static bool	get_is_setup (Model *m, ParticleIndex pi)
static Bonded	setup_particle (IMP::ParticleAdaptor decorator)
static Bonded	setup_particle (Model *m, ParticleIndex pi)

Iterate through the bonds
BondIterator	bonds_begin () const
BondIterator	bonds_end () const

Iterate through the bondeds
BondedIterator	bondeds_begin () const
BondedIterator	bondeds_end () const

Additional Inherited Members
Protected Member Functions inherited from IMP::Decorator
	Decorator (Model *m, ParticleIndex pi)
	Decorator (ParticleAdaptor p)

Member Function Documentation

Bond IMP::atom::Bonded::get_bond

(

unsigned int

i

)

const

Get a Bond of the ith bond.

Returns

decorator of the ith child, or throw an exception if there is no such bond

Definition at line 134 of file bond_decorators.h.

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Bonded IMP::atom::Bonded::get_bonded

(

unsigned int

i

)

const

Get a Bonded of the ith bonded particle.

Returns

decorator of the ith child, or throw an exception if there is no such bond

Note

I don't entirely like having this here as it duplicates functionality available otherwise, however it is such a fundamental operation and kind of a pain to write. It also means that we could later pull the edge endpoints into the vertex if desired.

Definition at line 150 of file bond_decorators.h.

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static Bonded IMP::atom::Bonded::setup_particle ( Model *  m, ParticleIndex  pi  )

static

Setup the particle so it can be used with this decorator.

Definition at line 113 of file bond_decorators.h.

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The documentation for this class was generated from the following file:

• bond_decorators.h