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IMP Reference Guide  2.14.0
The Integrative Modeling Platform
pmi/__init__.py
1 # This file was automatically generated by SWIG (http://www.swig.org).
2 # Version 3.0.10
3 #
4 # Do not make changes to this file unless you know what you are doing--modify
5 # the SWIG interface file instead.
6 
7 # This wrapper is part of IMP,
8 # Copyright 2007-2020 IMP Inventors. All rights reserved.
9 
10 from __future__ import print_function, division, absolute_import
11 
12 
13 
14 
15 from sys import version_info as _swig_python_version_info
16 if _swig_python_version_info >= (2, 7, 0):
17  def swig_import_helper():
18  import importlib
19  pkg = __name__.rpartition('.')[0]
20  mname = '.'.join((pkg, '_IMP_pmi')).lstrip('.')
21  try:
22  return importlib.import_module(mname)
23  except ImportError:
24  return importlib.import_module('_IMP_pmi')
25  _IMP_pmi = swig_import_helper()
26  del swig_import_helper
27 elif _swig_python_version_info >= (2, 6, 0):
28  def swig_import_helper():
29  from os.path import dirname
30  import imp
31  fp = None
32  try:
33  fp, pathname, description = imp.find_module('_IMP_pmi', [dirname(__file__)])
34  except ImportError:
35  import _IMP_pmi
36  return _IMP_pmi
37  if fp is not None:
38  try:
39  _mod = imp.load_module('_IMP_pmi', fp, pathname, description)
40  finally:
41  fp.close()
42  return _mod
43  _IMP_pmi = swig_import_helper()
44  del swig_import_helper
45 else:
46  import _IMP_pmi
47 del _swig_python_version_info
48 try:
49  _swig_property = property
50 except NameError:
51  pass # Python < 2.2 doesn't have 'property'.
52 
53 try:
54  import builtins as __builtin__
55 except ImportError:
56  import __builtin__
57 
58 def _swig_setattr_nondynamic(self, class_type, name, value, static=1):
59  if (name == "thisown"):
60  return self.this.own(value)
61  if (name == "this"):
62  if type(value).__name__ == 'SwigPyObject':
63  self.__dict__[name] = value
64  return
65  method = class_type.__swig_setmethods__.get(name, None)
66  if method:
67  return method(self, value)
68  if (not static):
69  object.__setattr__(self, name, value)
70  else:
71  raise AttributeError("You cannot add attributes to %s" % self)
72 
73 
74 def _swig_setattr(self, class_type, name, value):
75  return _swig_setattr_nondynamic(self, class_type, name, value, 0)
76 
77 
78 def _swig_getattr(self, class_type, name):
79  if (name == "thisown"):
80  return self.this.own()
81  method = class_type.__swig_getmethods__.get(name, None)
82  if method:
83  return method(self)
84  raise AttributeError("'%s' object has no attribute '%s'" % (class_type.__name__, name))
85 
86 
87 def _swig_repr(self):
88  try:
89  strthis = "proxy of " + self.this.__repr__()
90  except __builtin__.Exception:
91  strthis = ""
92  return "<%s.%s; %s >" % (self.__class__.__module__, self.__class__.__name__, strthis,)
93 
94 
95 def _swig_setattr_nondynamic_method(set):
96  def set_attr(self, name, value):
97  if (name == "thisown"):
98  return self.this.own(value)
99  if hasattr(self, name) or (name == "this"):
100  set(self, name, value)
101  else:
102  raise AttributeError("You cannot add attributes to %s" % self)
103  return set_attr
104 
105 
106 try:
107  import weakref
108  weakref_proxy = weakref.proxy
109 except __builtin__.Exception:
110  weakref_proxy = lambda x: x
111 
112 
113 class IMP_PMI_SwigPyIterator(object):
114  """Proxy of C++ swig::IMP_PMI_SwigPyIterator class."""
115 
116  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
117 
118  def __init__(self, *args, **kwargs):
119  raise AttributeError("No constructor defined - class is abstract")
120  __repr__ = _swig_repr
121  __swig_destroy__ = _IMP_pmi.delete_IMP_PMI_SwigPyIterator
122  __del__ = lambda self: None
123 
124  def value(self):
125  """value(IMP_PMI_SwigPyIterator self) -> PyObject *"""
126  return _IMP_pmi.IMP_PMI_SwigPyIterator_value(self)
127 
128 
129  def incr(self, n=1):
130  """
131  incr(IMP_PMI_SwigPyIterator self, size_t n=1) -> IMP_PMI_SwigPyIterator
132  incr(IMP_PMI_SwigPyIterator self) -> IMP_PMI_SwigPyIterator
133  """
134  return _IMP_pmi.IMP_PMI_SwigPyIterator_incr(self, n)
135 
136 
137  def decr(self, n=1):
138  """
139  decr(IMP_PMI_SwigPyIterator self, size_t n=1) -> IMP_PMI_SwigPyIterator
140  decr(IMP_PMI_SwigPyIterator self) -> IMP_PMI_SwigPyIterator
141  """
142  return _IMP_pmi.IMP_PMI_SwigPyIterator_decr(self, n)
143 
144 
145  def distance(self, x):
146  """distance(IMP_PMI_SwigPyIterator self, IMP_PMI_SwigPyIterator x) -> ptrdiff_t"""
147  return _IMP_pmi.IMP_PMI_SwigPyIterator_distance(self, x)
148 
149 
150  def equal(self, x):
151  """equal(IMP_PMI_SwigPyIterator self, IMP_PMI_SwigPyIterator x) -> bool"""
152  return _IMP_pmi.IMP_PMI_SwigPyIterator_equal(self, x)
153 
154 
155  def copy(self):
156  """copy(IMP_PMI_SwigPyIterator self) -> IMP_PMI_SwigPyIterator"""
157  return _IMP_pmi.IMP_PMI_SwigPyIterator_copy(self)
158 
159 
160  def next(self):
161  """next(IMP_PMI_SwigPyIterator self) -> PyObject *"""
162  return _IMP_pmi.IMP_PMI_SwigPyIterator_next(self)
163 
164 
165  def __next__(self):
166  """__next__(IMP_PMI_SwigPyIterator self) -> PyObject *"""
167  return _IMP_pmi.IMP_PMI_SwigPyIterator___next__(self)
168 
169 
170  def previous(self):
171  """previous(IMP_PMI_SwigPyIterator self) -> PyObject *"""
172  return _IMP_pmi.IMP_PMI_SwigPyIterator_previous(self)
173 
174 
175  def advance(self, n):
176  """advance(IMP_PMI_SwigPyIterator self, ptrdiff_t n) -> IMP_PMI_SwigPyIterator"""
177  return _IMP_pmi.IMP_PMI_SwigPyIterator_advance(self, n)
178 
179 
180  def __eq__(self, x):
181  """__eq__(IMP_PMI_SwigPyIterator self, IMP_PMI_SwigPyIterator x) -> bool"""
182  return _IMP_pmi.IMP_PMI_SwigPyIterator___eq__(self, x)
183 
184 
185  def __ne__(self, x):
186  """__ne__(IMP_PMI_SwigPyIterator self, IMP_PMI_SwigPyIterator x) -> bool"""
187  return _IMP_pmi.IMP_PMI_SwigPyIterator___ne__(self, x)
188 
189 
190  def __iadd__(self, n):
191  """__iadd__(IMP_PMI_SwigPyIterator self, ptrdiff_t n) -> IMP_PMI_SwigPyIterator"""
192  return _IMP_pmi.IMP_PMI_SwigPyIterator___iadd__(self, n)
193 
194 
195  def __isub__(self, n):
196  """__isub__(IMP_PMI_SwigPyIterator self, ptrdiff_t n) -> IMP_PMI_SwigPyIterator"""
197  return _IMP_pmi.IMP_PMI_SwigPyIterator___isub__(self, n)
198 
199 
200  def __add__(self, n):
201  """__add__(IMP_PMI_SwigPyIterator self, ptrdiff_t n) -> IMP_PMI_SwigPyIterator"""
202  return _IMP_pmi.IMP_PMI_SwigPyIterator___add__(self, n)
203 
204 
205  def __sub__(self, *args):
206  """
207  __sub__(IMP_PMI_SwigPyIterator self, ptrdiff_t n) -> IMP_PMI_SwigPyIterator
208  __sub__(IMP_PMI_SwigPyIterator self, IMP_PMI_SwigPyIterator x) -> ptrdiff_t
209  """
210  return _IMP_pmi.IMP_PMI_SwigPyIterator___sub__(self, *args)
211 
212  def __iter__(self):
213  return self
214 IMP_PMI_SwigPyIterator_swigregister = _IMP_pmi.IMP_PMI_SwigPyIterator_swigregister
215 IMP_PMI_SwigPyIterator_swigregister(IMP_PMI_SwigPyIterator)
216 
217 
218 _value_types=[]
219 _object_types=[]
220 _raii_types=[]
221 _plural_types=[]
222 
223 IMP_DEBUG = _IMP_pmi.IMP_DEBUG
224 IMP_RELEASE = _IMP_pmi.IMP_RELEASE
225 IMP_SILENT = _IMP_pmi.IMP_SILENT
226 IMP_PROGRESS = _IMP_pmi.IMP_PROGRESS
227 IMP_TERSE = _IMP_pmi.IMP_TERSE
228 IMP_VERBOSE = _IMP_pmi.IMP_VERBOSE
229 IMP_MEMORY = _IMP_pmi.IMP_MEMORY
230 IMP_NONE = _IMP_pmi.IMP_NONE
231 IMP_USAGE = _IMP_pmi.IMP_USAGE
232 IMP_INTERNAL = _IMP_pmi.IMP_INTERNAL
233 IMP_KERNEL_HAS_LOG4CXX = _IMP_pmi.IMP_KERNEL_HAS_LOG4CXX
234 IMP_COMPILER_HAS_AUTO = _IMP_pmi.IMP_COMPILER_HAS_AUTO
235 IMP_COMPILER_HAS_DEBUG_VECTOR = _IMP_pmi.IMP_COMPILER_HAS_DEBUG_VECTOR
236 IMP_COMPILER_HAS_UNIQUE_PTR = _IMP_pmi.IMP_COMPILER_HAS_UNIQUE_PTR
237 IMP_KERNEL_HAS_BOOST_RANDOM = _IMP_pmi.IMP_KERNEL_HAS_BOOST_RANDOM
238 IMP_KERNEL_HAS_NUMPY = _IMP_pmi.IMP_KERNEL_HAS_NUMPY
239 IMP_KERNEL_HAS_GPERFTOOLS = _IMP_pmi.IMP_KERNEL_HAS_GPERFTOOLS
240 IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER = _IMP_pmi.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER
241 IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER = _IMP_pmi.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER
242 IMPKERNEL_SHOW_WARNINGS = _IMP_pmi.IMPKERNEL_SHOW_WARNINGS
243 
244 import sys
245 class _DirectorObjects(object):
246  """@internal Simple class to keep references to director objects
247  to prevent premature deletion."""
248  def __init__(self):
249  self._objects = []
250  def register(self, obj):
251  """Take a reference to a director object; will only work for
252  refcounted C++ classes"""
253  if hasattr(obj, 'get_ref_count'):
254  self._objects.append(obj)
255  def cleanup(self):
256  """Only drop our reference and allow cleanup by Python if no other
257  Python references exist (we hold 3 references: one in self._objects,
258  one in x, and one in the argument list for getrefcount) *and* no
259  other C++ references exist (the Python object always holds one)"""
260  objs = [x for x in self._objects if sys.getrefcount(x) > 3 \
261  or x.get_ref_count() > 1]
262 # Do in two steps so the references are kept until the end of the
263 # function (deleting references may trigger a fresh call to this method)
264  self._objects = objs
265  def get_object_count(self):
266  """Get number of director objects (useful for testing only)"""
267  return len(self._objects)
268 _director_objects = _DirectorObjects()
269 
270 class _ostream(object):
271  """Proxy of C++ std::ostream class."""
272 
273  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
274 
275  def __init__(self, *args, **kwargs):
276  raise AttributeError("No constructor defined")
277  __repr__ = _swig_repr
278 
279  def write(self, osa_buf):
280  """write(_ostream self, char const * osa_buf)"""
281  return _IMP_pmi._ostream_write(self, osa_buf)
282 
283 _ostream_swigregister = _IMP_pmi._ostream_swigregister
284 _ostream_swigregister(_ostream)
285 
286 IMP_COMPILER_HAS_OVERRIDE = _IMP_pmi.IMP_COMPILER_HAS_OVERRIDE
287 IMP_COMPILER_HAS_FINAL = _IMP_pmi.IMP_COMPILER_HAS_FINAL
288 IMP_HAS_NOEXCEPT = _IMP_pmi.IMP_HAS_NOEXCEPT
289 IMP_C_OPEN_BINARY = _IMP_pmi.IMP_C_OPEN_BINARY
290 import IMP
291 IMP_CGAL_HAS_BOOST_FILESYSTEM = _IMP_pmi.IMP_CGAL_HAS_BOOST_FILESYSTEM
292 IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS = _IMP_pmi.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS
293 IMP_CGAL_HAS_BOOST_RANDOM = _IMP_pmi.IMP_CGAL_HAS_BOOST_RANDOM
294 IMP_CGAL_HAS_BOOST_SYSTEM = _IMP_pmi.IMP_CGAL_HAS_BOOST_SYSTEM
295 IMP_CGAL_HAS_NUMPY = _IMP_pmi.IMP_CGAL_HAS_NUMPY
296 IMPCGAL_SHOW_WARNINGS = _IMP_pmi.IMPCGAL_SHOW_WARNINGS
297 import IMP.cgal
298 IMP_ALGEBRA_HAS_IMP_CGAL = _IMP_pmi.IMP_ALGEBRA_HAS_IMP_CGAL
299 IMP_ALGEBRA_HAS_BOOST_FILESYSTEM = _IMP_pmi.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM
300 IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS = _IMP_pmi.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS
301 IMP_ALGEBRA_HAS_BOOST_RANDOM = _IMP_pmi.IMP_ALGEBRA_HAS_BOOST_RANDOM
302 IMP_ALGEBRA_HAS_BOOST_SYSTEM = _IMP_pmi.IMP_ALGEBRA_HAS_BOOST_SYSTEM
303 IMP_ALGEBRA_HAS_CGAL = _IMP_pmi.IMP_ALGEBRA_HAS_CGAL
304 IMP_ALGEBRA_HAS_NUMPY = _IMP_pmi.IMP_ALGEBRA_HAS_NUMPY
305 IMP_ALGEBRA_HAS_ANN = _IMP_pmi.IMP_ALGEBRA_HAS_ANN
306 IMPALGEBRA_SHOW_WARNINGS = _IMP_pmi.IMPALGEBRA_SHOW_WARNINGS
307 import IMP.algebra
308 IMP_DISPLAY_HAS_IMP_CGAL = _IMP_pmi.IMP_DISPLAY_HAS_IMP_CGAL
309 IMP_DISPLAY_HAS_BOOST_FILESYSTEM = _IMP_pmi.IMP_DISPLAY_HAS_BOOST_FILESYSTEM
310 IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS = _IMP_pmi.IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS
311 IMP_DISPLAY_HAS_BOOST_RANDOM = _IMP_pmi.IMP_DISPLAY_HAS_BOOST_RANDOM
312 IMP_DISPLAY_HAS_BOOST_SYSTEM = _IMP_pmi.IMP_DISPLAY_HAS_BOOST_SYSTEM
313 IMP_DISPLAY_HAS_CGAL = _IMP_pmi.IMP_DISPLAY_HAS_CGAL
314 IMP_DISPLAY_HAS_NUMPY = _IMP_pmi.IMP_DISPLAY_HAS_NUMPY
315 IMPDISPLAY_SHOW_WARNINGS = _IMP_pmi.IMPDISPLAY_SHOW_WARNINGS
316 import IMP.display
317 IMP_SCORE_FUNCTOR_HAS_IMP_CGAL = _IMP_pmi.IMP_SCORE_FUNCTOR_HAS_IMP_CGAL
318 IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM = _IMP_pmi.IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM
319 IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS = _IMP_pmi.IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS
320 IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM = _IMP_pmi.IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM
321 IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM = _IMP_pmi.IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM
322 IMP_SCORE_FUNCTOR_HAS_CGAL = _IMP_pmi.IMP_SCORE_FUNCTOR_HAS_CGAL
323 IMP_SCORE_FUNCTOR_HAS_HDF5 = _IMP_pmi.IMP_SCORE_FUNCTOR_HAS_HDF5
324 IMP_SCORE_FUNCTOR_HAS_NUMPY = _IMP_pmi.IMP_SCORE_FUNCTOR_HAS_NUMPY
325 IMPSCOREFUNCTOR_SHOW_WARNINGS = _IMP_pmi.IMPSCOREFUNCTOR_SHOW_WARNINGS
326 import IMP.score_functor
327 IMP_STATISTICS_HAS_IMP_CGAL = _IMP_pmi.IMP_STATISTICS_HAS_IMP_CGAL
328 IMP_STATISTICS_HAS_BOOST_FILESYSTEM = _IMP_pmi.IMP_STATISTICS_HAS_BOOST_FILESYSTEM
329 IMP_STATISTICS_HAS_BOOST_PROGRAMOPTIONS = _IMP_pmi.IMP_STATISTICS_HAS_BOOST_PROGRAMOPTIONS
330 IMP_STATISTICS_HAS_BOOST_RANDOM = _IMP_pmi.IMP_STATISTICS_HAS_BOOST_RANDOM
331 IMP_STATISTICS_HAS_BOOST_SYSTEM = _IMP_pmi.IMP_STATISTICS_HAS_BOOST_SYSTEM
332 IMP_STATISTICS_HAS_CGAL = _IMP_pmi.IMP_STATISTICS_HAS_CGAL
333 IMP_STATISTICS_HAS_NUMPY = _IMP_pmi.IMP_STATISTICS_HAS_NUMPY
334 IMPSTATISTICS_SHOW_WARNINGS = _IMP_pmi.IMPSTATISTICS_SHOW_WARNINGS
335 import IMP.statistics
336 IMP_CORE_HAS_IMP_CGAL = _IMP_pmi.IMP_CORE_HAS_IMP_CGAL
337 IMP_CORE_HAS_IMP_KERNEL = _IMP_pmi.IMP_CORE_HAS_IMP_KERNEL
338 IMP_CORE_HAS_BOOST_FILESYSTEM = _IMP_pmi.IMP_CORE_HAS_BOOST_FILESYSTEM
339 IMP_CORE_HAS_BOOST_PROGRAMOPTIONS = _IMP_pmi.IMP_CORE_HAS_BOOST_PROGRAMOPTIONS
340 IMP_CORE_HAS_BOOST_RANDOM = _IMP_pmi.IMP_CORE_HAS_BOOST_RANDOM
341 IMP_CORE_HAS_BOOST_SYSTEM = _IMP_pmi.IMP_CORE_HAS_BOOST_SYSTEM
342 IMP_CORE_HAS_CGAL = _IMP_pmi.IMP_CORE_HAS_CGAL
343 IMP_CORE_HAS_HDF5 = _IMP_pmi.IMP_CORE_HAS_HDF5
344 IMP_CORE_HAS_NUMPY = _IMP_pmi.IMP_CORE_HAS_NUMPY
345 IMPCORE_SHOW_WARNINGS = _IMP_pmi.IMPCORE_SHOW_WARNINGS
346 import IMP.core
347 IMP_CONTAINER_HAS_IMP_ALGEBRA = _IMP_pmi.IMP_CONTAINER_HAS_IMP_ALGEBRA
348 IMP_CONTAINER_HAS_IMP_CGAL = _IMP_pmi.IMP_CONTAINER_HAS_IMP_CGAL
349 IMP_CONTAINER_HAS_IMP_DISPLAY = _IMP_pmi.IMP_CONTAINER_HAS_IMP_DISPLAY
350 IMP_CONTAINER_HAS_IMP_KERNEL = _IMP_pmi.IMP_CONTAINER_HAS_IMP_KERNEL
351 IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR = _IMP_pmi.IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR
352 IMP_CONTAINER_HAS_BOOST_FILESYSTEM = _IMP_pmi.IMP_CONTAINER_HAS_BOOST_FILESYSTEM
353 IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS = _IMP_pmi.IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS
354 IMP_CONTAINER_HAS_BOOST_RANDOM = _IMP_pmi.IMP_CONTAINER_HAS_BOOST_RANDOM
355 IMP_CONTAINER_HAS_BOOST_SYSTEM = _IMP_pmi.IMP_CONTAINER_HAS_BOOST_SYSTEM
356 IMP_CONTAINER_HAS_CGAL = _IMP_pmi.IMP_CONTAINER_HAS_CGAL
357 IMP_CONTAINER_HAS_HDF5 = _IMP_pmi.IMP_CONTAINER_HAS_HDF5
358 IMP_CONTAINER_HAS_NUMPY = _IMP_pmi.IMP_CONTAINER_HAS_NUMPY
359 IMP_CONTAINER_HAS_PYTHON_IHM = _IMP_pmi.IMP_CONTAINER_HAS_PYTHON_IHM
360 IMP_CONTAINER_HAS_GOOGLE_DENSE_HASH_MAP = _IMP_pmi.IMP_CONTAINER_HAS_GOOGLE_DENSE_HASH_MAP
361 IMP_CONTAINER_HAS_ROBIN_MAP = _IMP_pmi.IMP_CONTAINER_HAS_ROBIN_MAP
362 IMPCONTAINER_SHOW_WARNINGS = _IMP_pmi.IMPCONTAINER_SHOW_WARNINGS
363 import IMP.container
364 IMP_ATOM_HAS_IMP_CGAL = _IMP_pmi.IMP_ATOM_HAS_IMP_CGAL
365 IMP_ATOM_HAS_IMP_KERNEL = _IMP_pmi.IMP_ATOM_HAS_IMP_KERNEL
366 IMP_ATOM_HAS_IMP_SCORE_FUNCTOR = _IMP_pmi.IMP_ATOM_HAS_IMP_SCORE_FUNCTOR
367 IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS = _IMP_pmi.IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS
368 IMP_ATOM_HAS_BOOST_RANDOM = _IMP_pmi.IMP_ATOM_HAS_BOOST_RANDOM
369 IMP_ATOM_HAS_BOOST_REGEX = _IMP_pmi.IMP_ATOM_HAS_BOOST_REGEX
370 IMP_ATOM_HAS_BOOST_SYSTEM = _IMP_pmi.IMP_ATOM_HAS_BOOST_SYSTEM
371 IMP_ATOM_HAS_CGAL = _IMP_pmi.IMP_ATOM_HAS_CGAL
372 IMP_ATOM_HAS_HDF5 = _IMP_pmi.IMP_ATOM_HAS_HDF5
373 IMP_ATOM_HAS_NUMPY = _IMP_pmi.IMP_ATOM_HAS_NUMPY
374 IMP_ATOM_HAS_PYTHON_IHM = _IMP_pmi.IMP_ATOM_HAS_PYTHON_IHM
375 IMPATOM_SHOW_WARNINGS = _IMP_pmi.IMPATOM_SHOW_WARNINGS
376 IMP_ATOM_TYPE_INDEX = _IMP_pmi.IMP_ATOM_TYPE_INDEX
377 IMP_RESIDUE_TYPE_INDEX = _IMP_pmi.IMP_RESIDUE_TYPE_INDEX
378 IMP_HIERARCHY_TYPE_INDEX = _IMP_pmi.IMP_HIERARCHY_TYPE_INDEX
379 IMP_CHAIN_TYPE_INDEX = _IMP_pmi.IMP_CHAIN_TYPE_INDEX
380 import IMP.atom
381 IMP_EM_HAS_IMP_CGAL = _IMP_pmi.IMP_EM_HAS_IMP_CGAL
382 IMP_EM_HAS_IMP_CONTAINER = _IMP_pmi.IMP_EM_HAS_IMP_CONTAINER
383 IMP_EM_HAS_IMP_DISPLAY = _IMP_pmi.IMP_EM_HAS_IMP_DISPLAY
384 IMP_EM_HAS_IMP_SCORE_FUNCTOR = _IMP_pmi.IMP_EM_HAS_IMP_SCORE_FUNCTOR
385 IMP_EM_HAS_BOOST_FILESYSTEM = _IMP_pmi.IMP_EM_HAS_BOOST_FILESYSTEM
386 IMP_EM_HAS_BOOST_PROGRAMOPTIONS = _IMP_pmi.IMP_EM_HAS_BOOST_PROGRAMOPTIONS
387 IMP_EM_HAS_BOOST_RANDOM = _IMP_pmi.IMP_EM_HAS_BOOST_RANDOM
388 IMP_EM_HAS_BOOST_REGEX = _IMP_pmi.IMP_EM_HAS_BOOST_REGEX
389 IMP_EM_HAS_BOOST_SYSTEM = _IMP_pmi.IMP_EM_HAS_BOOST_SYSTEM
390 IMP_EM_HAS_CGAL = _IMP_pmi.IMP_EM_HAS_CGAL
391 IMP_EM_HAS_HDF5 = _IMP_pmi.IMP_EM_HAS_HDF5
392 IMP_EM_HAS_NUMPY = _IMP_pmi.IMP_EM_HAS_NUMPY
393 IMP_EM_HAS_PYTHON_IHM = _IMP_pmi.IMP_EM_HAS_PYTHON_IHM
394 IMPEM_SHOW_WARNINGS = _IMP_pmi.IMPEM_SHOW_WARNINGS
395 import IMP.em
396 IMP_SAXS_HAS_IMP_CGAL = _IMP_pmi.IMP_SAXS_HAS_IMP_CGAL
397 IMP_SAXS_HAS_IMP_CONTAINER = _IMP_pmi.IMP_SAXS_HAS_IMP_CONTAINER
398 IMP_SAXS_HAS_IMP_DISPLAY = _IMP_pmi.IMP_SAXS_HAS_IMP_DISPLAY
399 IMP_SAXS_HAS_IMP_KERNEL = _IMP_pmi.IMP_SAXS_HAS_IMP_KERNEL
400 IMP_SAXS_HAS_IMP_SCORE_FUNCTOR = _IMP_pmi.IMP_SAXS_HAS_IMP_SCORE_FUNCTOR
401 IMP_SAXS_HAS_BOOST_FILESYSTEM = _IMP_pmi.IMP_SAXS_HAS_BOOST_FILESYSTEM
402 IMP_SAXS_HAS_BOOST_PROGRAMOPTIONS = _IMP_pmi.IMP_SAXS_HAS_BOOST_PROGRAMOPTIONS
403 IMP_SAXS_HAS_BOOST_RANDOM = _IMP_pmi.IMP_SAXS_HAS_BOOST_RANDOM
404 IMP_SAXS_HAS_BOOST_REGEX = _IMP_pmi.IMP_SAXS_HAS_BOOST_REGEX
405 IMP_SAXS_HAS_BOOST_SYSTEM = _IMP_pmi.IMP_SAXS_HAS_BOOST_SYSTEM
406 IMP_SAXS_HAS_CGAL = _IMP_pmi.IMP_SAXS_HAS_CGAL
407 IMP_SAXS_HAS_HDF5 = _IMP_pmi.IMP_SAXS_HAS_HDF5
408 IMP_SAXS_HAS_NUMPY = _IMP_pmi.IMP_SAXS_HAS_NUMPY
409 IMP_SAXS_HAS_PYTHON_IHM = _IMP_pmi.IMP_SAXS_HAS_PYTHON_IHM
410 IMPSAXS_SHOW_WARNINGS = _IMP_pmi.IMPSAXS_SHOW_WARNINGS
411 import IMP.saxs
412 IMP_ISD_HAS_IMP_CGAL = _IMP_pmi.IMP_ISD_HAS_IMP_CGAL
413 IMP_ISD_HAS_IMP_DISPLAY = _IMP_pmi.IMP_ISD_HAS_IMP_DISPLAY
414 IMP_ISD_HAS_IMP_SCORE_FUNCTOR = _IMP_pmi.IMP_ISD_HAS_IMP_SCORE_FUNCTOR
415 IMP_ISD_HAS_BOOST_FILESYSTEM = _IMP_pmi.IMP_ISD_HAS_BOOST_FILESYSTEM
416 IMP_ISD_HAS_BOOST_PROGRAMOPTIONS = _IMP_pmi.IMP_ISD_HAS_BOOST_PROGRAMOPTIONS
417 IMP_ISD_HAS_BOOST_RANDOM = _IMP_pmi.IMP_ISD_HAS_BOOST_RANDOM
418 IMP_ISD_HAS_BOOST_REGEX = _IMP_pmi.IMP_ISD_HAS_BOOST_REGEX
419 IMP_ISD_HAS_BOOST_SYSTEM = _IMP_pmi.IMP_ISD_HAS_BOOST_SYSTEM
420 IMP_ISD_HAS_CGAL = _IMP_pmi.IMP_ISD_HAS_CGAL
421 IMP_ISD_HAS_HDF5 = _IMP_pmi.IMP_ISD_HAS_HDF5
422 IMP_ISD_HAS_NUMPY = _IMP_pmi.IMP_ISD_HAS_NUMPY
423 IMP_ISD_HAS_PYTHON_IHM = _IMP_pmi.IMP_ISD_HAS_PYTHON_IHM
424 IMPISD_SHOW_WARNINGS = _IMP_pmi.IMPISD_SHOW_WARNINGS
425 import IMP.isd
426 IMP_PMI_HAS_IMP_ALGEBRA = _IMP_pmi.IMP_PMI_HAS_IMP_ALGEBRA
427 IMP_PMI_HAS_IMP_ATOM = _IMP_pmi.IMP_PMI_HAS_IMP_ATOM
428 IMP_PMI_HAS_IMP_CGAL = _IMP_pmi.IMP_PMI_HAS_IMP_CGAL
429 IMP_PMI_HAS_IMP_DISPLAY = _IMP_pmi.IMP_PMI_HAS_IMP_DISPLAY
430 IMP_PMI_HAS_IMP_EM = _IMP_pmi.IMP_PMI_HAS_IMP_EM
431 IMP_PMI_HAS_IMP_KERNEL = _IMP_pmi.IMP_PMI_HAS_IMP_KERNEL
432 IMP_PMI_HAS_IMP_SAXS = _IMP_pmi.IMP_PMI_HAS_IMP_SAXS
433 IMP_PMI_HAS_IMP_SCORE_FUNCTOR = _IMP_pmi.IMP_PMI_HAS_IMP_SCORE_FUNCTOR
434 IMP_PMI_HAS_IMP_STATISTICS = _IMP_pmi.IMP_PMI_HAS_IMP_STATISTICS
435 IMP_PMI_HAS_BOOST_FILESYSTEM = _IMP_pmi.IMP_PMI_HAS_BOOST_FILESYSTEM
436 IMP_PMI_HAS_BOOST_PROGRAMOPTIONS = _IMP_pmi.IMP_PMI_HAS_BOOST_PROGRAMOPTIONS
437 IMP_PMI_HAS_BOOST_RANDOM = _IMP_pmi.IMP_PMI_HAS_BOOST_RANDOM
438 IMP_PMI_HAS_BOOST_REGEX = _IMP_pmi.IMP_PMI_HAS_BOOST_REGEX
439 IMP_PMI_HAS_BOOST_SYSTEM = _IMP_pmi.IMP_PMI_HAS_BOOST_SYSTEM
440 IMP_PMI_HAS_CGAL = _IMP_pmi.IMP_PMI_HAS_CGAL
441 IMP_PMI_HAS_HDF5 = _IMP_pmi.IMP_PMI_HAS_HDF5
442 IMP_PMI_HAS_NUMPY = _IMP_pmi.IMP_PMI_HAS_NUMPY
443 IMP_PMI_HAS_PYTHON_IHM = _IMP_pmi.IMP_PMI_HAS_PYTHON_IHM
444 IMPPMI_SHOW_WARNINGS = _IMP_pmi.IMPPMI_SHOW_WARNINGS
445 
446 _object_types.append("CompositeRestraint")
447 
448 
449 def _object_cast_to_CompositeRestraint(o):
450  """_object_cast_to_CompositeRestraint(Object o) -> CompositeRestraint"""
451  return _IMP_pmi._object_cast_to_CompositeRestraint(o)
452 
453 def Uncertainties(l=[]):
454  return [Uncertainty(x) for x in l]
455 _plural_types.append("Uncertainties")
456 
457 
458 _value_types.append("Uncertainty")
459 
460 
461 def Resolutions(l=[]):
462  return [Resolution(x) for x in l]
463 _plural_types.append("Resolutions")
464 
465 
466 _value_types.append("Resolution")
467 
468 
469 def Symmetrics(l=[]):
470  return [Symmetric(x) for x in l]
471 _plural_types.append("Symmetrics")
472 
473 
474 _value_types.append("Symmetric")
475 
476 
477 _object_types.append("TransformMover")
478 
479 
480 def _object_cast_to_TransformMover(o):
481  """_object_cast_to_TransformMover(Object o) -> TransformMover"""
482  return _IMP_pmi._object_cast_to_TransformMover(o)
483 
484 _object_types.append("MembraneRestraint")
485 
486 
487 def _object_cast_to_MembraneRestraint(o):
488  """_object_cast_to_MembraneRestraint(Object o) -> MembraneRestraint"""
489  return _IMP_pmi._object_cast_to_MembraneRestraint(o)
490 
491 _object_types.append("InternalCoordinatesConstraint")
492 
493 
494 def _object_cast_to_InternalCoordinatesConstraint(o):
495  """_object_cast_to_InternalCoordinatesConstraint(Object o) -> InternalCoordinatesConstraint"""
496  return _IMP_pmi._object_cast_to_InternalCoordinatesConstraint(o)
497 
498 class StructureWarning(UserWarning):
499  """Warning related to handling of structures"""
500  pass
501 
502 
503 class ParameterWarning(UserWarning):
504  """Warning for probably incorrect input parameters"""
505  pass
506 
507 
508 class MissingFileWarning(UserWarning):
509  """Warning for an expected, but missing, file"""
510  pass
511 
512 class MembraneRestraint(IMP.isd.ISDRestraint):
513  """Proxy of C++ IMP::pmi::MembraneRestraint class."""
514 
515  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
516 
517  def __init__(self, m, z_nuisance, thickness, softness, plateau, linear):
518  """__init__(IMP::pmi::MembraneRestraint self, Model m, ParticleIndex z_nuisance, double thickness, double softness, double plateau, double linear) -> MembraneRestraint"""
519  this = _IMP_pmi.new_MembraneRestraint(m, z_nuisance, thickness, softness, plateau, linear)
520  try:
521  self.this.append(this)
522  except __builtin__.Exception:
523  self.this = this
524 
525  def add_particles_below(self, particles):
526  """add_particles_below(MembraneRestraint self, IMP::ParticleIndexes const & particles)"""
527  return _IMP_pmi.MembraneRestraint_add_particles_below(self, particles)
528 
529 
530  def add_particles_above(self, particles):
531  """add_particles_above(MembraneRestraint self, IMP::ParticleIndexes const & particles)"""
532  return _IMP_pmi.MembraneRestraint_add_particles_above(self, particles)
533 
534 
535  def add_particles_inside(self, particles):
536  """add_particles_inside(MembraneRestraint self, IMP::ParticleIndexes const & particles)"""
537  return _IMP_pmi.MembraneRestraint_add_particles_inside(self, particles)
538 
539 
540  def get_score(self, prob):
541  """get_score(MembraneRestraint self, double prob) -> double"""
542  return _IMP_pmi.MembraneRestraint_get_score(self, prob)
543 
544 
545  def get_probability_above(self, z, z_slope_center_upper):
546  """get_probability_above(MembraneRestraint self, double z, double z_slope_center_upper) -> double"""
547  return _IMP_pmi.MembraneRestraint_get_probability_above(self, z, z_slope_center_upper)
548 
549 
550  def get_score_above(self, z, z_slope_center_upper):
551  """get_score_above(MembraneRestraint self, double z, double z_slope_center_upper) -> double"""
552  return _IMP_pmi.MembraneRestraint_get_score_above(self, z, z_slope_center_upper)
553 
554 
555  def get_probability_below(self, z, z_slope_center_lower):
556  """get_probability_below(MembraneRestraint self, double z, double z_slope_center_lower) -> double"""
557  return _IMP_pmi.MembraneRestraint_get_probability_below(self, z, z_slope_center_lower)
558 
559 
560  def get_score_below(self, z, z_slope_center_lower):
561  """get_score_below(MembraneRestraint self, double z, double z_slope_center_lower) -> double"""
562  return _IMP_pmi.MembraneRestraint_get_score_below(self, z, z_slope_center_lower)
563 
564 
565  def get_score_inside(self, z, z_slope_center_lower, z_slope_center_upper):
566  """get_score_inside(MembraneRestraint self, double z, double z_slope_center_lower, double z_slope_center_upper) -> double"""
567  return _IMP_pmi.MembraneRestraint_get_score_inside(self, z, z_slope_center_lower, z_slope_center_upper)
568 
569 
570  def __str__(self):
571  """__str__(MembraneRestraint self) -> std::string"""
572  return _IMP_pmi.MembraneRestraint___str__(self)
573 
574 
575  def __repr__(self):
576  """__repr__(MembraneRestraint self) -> std::string"""
577  return _IMP_pmi.MembraneRestraint___repr__(self)
578 
579 
580  @staticmethod
581  def get_from(o):
582  return _object_cast_to_MembraneRestraint(o)
583 
584 MembraneRestraint_swigregister = _IMP_pmi.MembraneRestraint_swigregister
585 MembraneRestraint_swigregister(MembraneRestraint)
586 
587 class CompositeRestraint(IMP.Restraint):
588  """Proxy of C++ IMP::pmi::CompositeRestraint class."""
589 
590  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
591 
592  def __init__(self, *args):
593  """
594  __init__(IMP::pmi::CompositeRestraint self, Model m, _ParticleIndexesAdaptor handle_particle_indexes, double coffd, double l, bool tabprob, double plateau, std::string name) -> CompositeRestraint
595  __init__(IMP::pmi::CompositeRestraint self, Model m, _ParticleIndexesAdaptor handle_particle_indexes, double coffd, double l, bool tabprob, double plateau) -> CompositeRestraint
596  """
597  this = _IMP_pmi.new_CompositeRestraint(*args)
598  try:
599  self.this.append(this)
600  except __builtin__.Exception:
601  self.this = this
602 
603  def add_composite_particle(self, pi):
604  """add_composite_particle(CompositeRestraint self, _ParticleIndexesAdaptor pi)"""
605  return _IMP_pmi.CompositeRestraint_add_composite_particle(self, pi)
606 
607 
608  def get_number_of_elements(self):
609  """get_number_of_elements(CompositeRestraint self) -> unsigned int"""
610  return _IMP_pmi.CompositeRestraint_get_number_of_elements(self)
611 
612 
613  def do_get_inputs(self):
614  """do_get_inputs(CompositeRestraint self) -> IMP::ModelObjectsTemp"""
615  return _IMP_pmi.CompositeRestraint_do_get_inputs(self)
616 
617 
618  def get_version_info(self):
619  """get_version_info(CompositeRestraint self) -> VersionInfo"""
620  return _IMP_pmi.CompositeRestraint_get_version_info(self)
621 
622 
623  def get_probability(self):
624  """get_probability(CompositeRestraint self) -> double"""
625  return _IMP_pmi.CompositeRestraint_get_probability(self)
626 
627 
628  def __str__(self):
629  """__str__(CompositeRestraint self) -> std::string"""
630  return _IMP_pmi.CompositeRestraint___str__(self)
631 
632 
633  def __repr__(self):
634  """__repr__(CompositeRestraint self) -> std::string"""
635  return _IMP_pmi.CompositeRestraint___repr__(self)
636 
637 
638  @staticmethod
639  def get_from(o):
640  return _object_cast_to_CompositeRestraint(o)
641 
642 CompositeRestraint_swigregister = _IMP_pmi.CompositeRestraint_swigregister
643 CompositeRestraint_swigregister(CompositeRestraint)
644 
645 class Uncertainty(IMP.Decorator):
646  """Proxy of C++ IMP::pmi::Uncertainty class."""
647 
648  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
649 
650  def get_uncertainty(self):
651  """get_uncertainty(Uncertainty self) -> IMP::Float"""
652  return _IMP_pmi.Uncertainty_get_uncertainty(self)
653 
654 
655  def set_uncertainty(self, d):
656  """set_uncertainty(Uncertainty self, IMP::Float d)"""
657  return _IMP_pmi.Uncertainty_set_uncertainty(self, d)
658 
659 
660  def __init__(self, *args):
661  """
662  __init__(IMP::pmi::Uncertainty self) -> Uncertainty
663  __init__(IMP::pmi::Uncertainty self, Model m, ParticleIndex id) -> Uncertainty
664  __init__(IMP::pmi::Uncertainty self, _ParticleAdaptor d) -> Uncertainty
665  """
666  this = _IMP_pmi.new_Uncertainty(*args)
667  try:
668  self.this.append(this)
669  except __builtin__.Exception:
670  self.this = this
671 
672  def get_is_setup(*args):
673  """
674  get_is_setup(Model m, ParticleIndex pi) -> bool
675  get_is_setup(_ParticleAdaptor p) -> bool
676  """
677  return _IMP_pmi.Uncertainty_get_is_setup(*args)
678 
679  get_is_setup = staticmethod(get_is_setup)
680 
681  def show(self, *args):
682  """
683  show(Uncertainty self, _ostream out)
684  show(Uncertainty self)
685  """
686  return _IMP_pmi.Uncertainty_show(self, *args)
687 
688 
689  def setup_particle(*args):
690  """
691  setup_particle(Model m, ParticleIndex pi, IMP::Float uncertainty) -> Uncertainty
692  setup_particle(_ParticleAdaptor decorator, IMP::Float uncertainty) -> Uncertainty
693  """
694  return _IMP_pmi.Uncertainty_setup_particle(*args)
695 
696  setup_particle = staticmethod(setup_particle)
697 
698  def get_uncertainty_key():
699  """get_uncertainty_key() -> FloatKey"""
700  return _IMP_pmi.Uncertainty_get_uncertainty_key()
701 
702  get_uncertainty_key = staticmethod(get_uncertainty_key)
703 
704  def add_attribute(self, *args):
705  """
706  add_attribute(Uncertainty self, FloatKey k, IMP::Float v, bool opt)
707  add_attribute(Uncertainty self, FloatKey a0, IMP::Float a1)
708  add_attribute(Uncertainty self, IntKey a0, IMP::Int a1)
709  add_attribute(Uncertainty self, FloatsKey a0, IMP::Floats a1)
710  add_attribute(Uncertainty self, IntsKey a0, IMP::Ints a1)
711  add_attribute(Uncertainty self, StringKey a0, IMP::String a1)
712  add_attribute(Uncertainty self, ParticleIndexKey a0, Particle a1)
713  add_attribute(Uncertainty self, ObjectKey a0, Object a1)
714  """
715  return _IMP_pmi.Uncertainty_add_attribute(self, *args)
716 
717 
718  def get_value(self, *args):
719  """
720  get_value(Uncertainty self, FloatKey a0) -> IMP::Float
721  get_value(Uncertainty self, IntKey a0) -> IMP::Int
722  get_value(Uncertainty self, FloatsKey a0) -> IMP::Floats
723  get_value(Uncertainty self, IntsKey a0) -> IMP::Ints
724  get_value(Uncertainty self, StringKey a0) -> IMP::String
725  get_value(Uncertainty self, ParticleIndexKey a0) -> Particle
726  get_value(Uncertainty self, ObjectKey a0) -> Object
727  """
728  return _IMP_pmi.Uncertainty_get_value(self, *args)
729 
730 
731  def set_value(self, *args):
732  """
733  set_value(Uncertainty self, FloatKey a0, IMP::Float a1)
734  set_value(Uncertainty self, IntKey a0, IMP::Int a1)
735  set_value(Uncertainty self, FloatsKey a0, IMP::Floats a1)
736  set_value(Uncertainty self, IntsKey a0, IMP::Ints a1)
737  set_value(Uncertainty self, StringKey a0, IMP::String a1)
738  set_value(Uncertainty self, ParticleIndexKey a0, Particle a1)
739  set_value(Uncertainty self, ObjectKey a0, Object a1)
740  """
741  return _IMP_pmi.Uncertainty_set_value(self, *args)
742 
743 
744  def remove_attribute(self, *args):
745  """
746  remove_attribute(Uncertainty self, FloatKey a0)
747  remove_attribute(Uncertainty self, IntKey a0)
748  remove_attribute(Uncertainty self, FloatsKey a0)
749  remove_attribute(Uncertainty self, IntsKey a0)
750  remove_attribute(Uncertainty self, StringKey a0)
751  remove_attribute(Uncertainty self, ParticleIndexKey a0)
752  remove_attribute(Uncertainty self, ObjectKey a0)
753  """
754  return _IMP_pmi.Uncertainty_remove_attribute(self, *args)
755 
756 
757  def has_attribute(self, *args):
758  """
759  has_attribute(Uncertainty self, FloatKey a0) -> bool
760  has_attribute(Uncertainty self, IntKey a0) -> bool
761  has_attribute(Uncertainty self, FloatsKey a0) -> bool
762  has_attribute(Uncertainty self, IntsKey a0) -> bool
763  has_attribute(Uncertainty self, StringKey a0) -> bool
764  has_attribute(Uncertainty self, ParticleIndexKey a0) -> bool
765  has_attribute(Uncertainty self, ObjectKey a0) -> bool
766  """
767  return _IMP_pmi.Uncertainty_has_attribute(self, *args)
768 
769 
770  def get_derivative(self, a0):
771  """get_derivative(Uncertainty self, FloatKey a0) -> double"""
772  return _IMP_pmi.Uncertainty_get_derivative(self, a0)
773 
774 
775  def get_name(self):
776  """get_name(Uncertainty self) -> std::string"""
777  return _IMP_pmi.Uncertainty_get_name(self)
778 
779 
780  def clear_caches(self):
781  """clear_caches(Uncertainty self)"""
782  return _IMP_pmi.Uncertainty_clear_caches(self)
783 
784 
785  def set_name(self, a0):
786  """set_name(Uncertainty self, std::string a0)"""
787  return _IMP_pmi.Uncertainty_set_name(self, a0)
788 
789 
790  def set_check_level(self, a0):
791  """set_check_level(Uncertainty self, IMP::CheckLevel a0)"""
792  return _IMP_pmi.Uncertainty_set_check_level(self, a0)
793 
794 
795  def add_to_derivative(self, a0, a1, a2):
796  """add_to_derivative(Uncertainty self, FloatKey a0, double a1, DerivativeAccumulator a2)"""
797  return _IMP_pmi.Uncertainty_add_to_derivative(self, a0, a1, a2)
798 
799 
800  def set_is_optimized(self, a0, a1):
801  """set_is_optimized(Uncertainty self, FloatKey a0, bool a1)"""
802  return _IMP_pmi.Uncertainty_set_is_optimized(self, a0, a1)
803 
804 
805  def get_is_optimized(self, a0):
806  """get_is_optimized(Uncertainty self, FloatKey a0) -> bool"""
807  return _IMP_pmi.Uncertainty_get_is_optimized(self, a0)
808 
809 
810  def get_check_level(self):
811  """get_check_level(Uncertainty self) -> IMP::CheckLevel"""
812  return _IMP_pmi.Uncertainty_get_check_level(self)
813 
814 
815  def __eq__(self, *args):
816  """
817  __eq__(Uncertainty self, Uncertainty o) -> bool
818  __eq__(Uncertainty self, Particle d) -> bool
819  """
820  return _IMP_pmi.Uncertainty___eq__(self, *args)
821 
822 
823  def __ne__(self, *args):
824  """
825  __ne__(Uncertainty self, Uncertainty o) -> bool
826  __ne__(Uncertainty self, Particle d) -> bool
827  """
828  return _IMP_pmi.Uncertainty___ne__(self, *args)
829 
830 
831  def __le__(self, *args):
832  """
833  __le__(Uncertainty self, Uncertainty o) -> bool
834  __le__(Uncertainty self, Particle d) -> bool
835  """
836  return _IMP_pmi.Uncertainty___le__(self, *args)
837 
838 
839  def __lt__(self, *args):
840  """
841  __lt__(Uncertainty self, Uncertainty o) -> bool
842  __lt__(Uncertainty self, Particle d) -> bool
843  """
844  return _IMP_pmi.Uncertainty___lt__(self, *args)
845 
846 
847  def __ge__(self, *args):
848  """
849  __ge__(Uncertainty self, Uncertainty o) -> bool
850  __ge__(Uncertainty self, Particle d) -> bool
851  """
852  return _IMP_pmi.Uncertainty___ge__(self, *args)
853 
854 
855  def __gt__(self, *args):
856  """
857  __gt__(Uncertainty self, Uncertainty o) -> bool
858  __gt__(Uncertainty self, Particle d) -> bool
859  """
860  return _IMP_pmi.Uncertainty___gt__(self, *args)
861 
862 
863  def __hash__(self):
864  """__hash__(Uncertainty self) -> std::size_t"""
865  return _IMP_pmi.Uncertainty___hash__(self)
866 
867 
868  def __str__(self):
869  """__str__(Uncertainty self) -> std::string"""
870  return _IMP_pmi.Uncertainty___str__(self)
871 
872 
873  def __repr__(self):
874  """__repr__(Uncertainty self) -> std::string"""
875  return _IMP_pmi.Uncertainty___repr__(self)
876 
877  __swig_destroy__ = _IMP_pmi.delete_Uncertainty
878  __del__ = lambda self: None
879 Uncertainty_swigregister = _IMP_pmi.Uncertainty_swigregister
880 Uncertainty_swigregister(Uncertainty)
881 
882 def Uncertainty_get_is_setup(*args):
883  """
884  get_is_setup(Model m, ParticleIndex pi) -> bool
885  Uncertainty_get_is_setup(_ParticleAdaptor p) -> bool
886  """
887  return _IMP_pmi.Uncertainty_get_is_setup(*args)
888 
889 def Uncertainty_setup_particle(*args):
890  """
891  setup_particle(Model m, ParticleIndex pi, IMP::Float uncertainty) -> Uncertainty
892  Uncertainty_setup_particle(_ParticleAdaptor decorator, IMP::Float uncertainty) -> Uncertainty
893  """
894  return _IMP_pmi.Uncertainty_setup_particle(*args)
895 
896 def Uncertainty_get_uncertainty_key():
897  """Uncertainty_get_uncertainty_key() -> FloatKey"""
898  return _IMP_pmi.Uncertainty_get_uncertainty_key()
899 
900 class Resolution(IMP.Decorator):
901  """Proxy of C++ IMP::pmi::Resolution class."""
902 
903  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
904 
905  def get_resolution(self):
906  """get_resolution(Resolution self) -> IMP::Float"""
907  return _IMP_pmi.Resolution_get_resolution(self)
908 
909 
910  def set_resolution(self, d):
911  """set_resolution(Resolution self, IMP::Float d)"""
912  return _IMP_pmi.Resolution_set_resolution(self, d)
913 
914 
915  def __init__(self, *args):
916  """
917  __init__(IMP::pmi::Resolution self) -> Resolution
918  __init__(IMP::pmi::Resolution self, Model m, ParticleIndex id) -> Resolution
919  __init__(IMP::pmi::Resolution self, _ParticleAdaptor d) -> Resolution
920  """
921  this = _IMP_pmi.new_Resolution(*args)
922  try:
923  self.this.append(this)
924  except __builtin__.Exception:
925  self.this = this
926 
927  def get_is_setup(*args):
928  """
929  get_is_setup(Model m, ParticleIndex pi) -> bool
930  get_is_setup(_ParticleAdaptor p) -> bool
931  """
932  return _IMP_pmi.Resolution_get_is_setup(*args)
933 
934  get_is_setup = staticmethod(get_is_setup)
935 
936  def show(self, *args):
937  """
938  show(Resolution self, _ostream out)
939  show(Resolution self)
940  """
941  return _IMP_pmi.Resolution_show(self, *args)
942 
943 
944  def setup_particle(*args):
945  """
946  setup_particle(Model m, ParticleIndex pi, IMP::Float resolution) -> Resolution
947  setup_particle(_ParticleAdaptor decorator, IMP::Float resolution) -> Resolution
948  """
949  return _IMP_pmi.Resolution_setup_particle(*args)
950 
951  setup_particle = staticmethod(setup_particle)
952 
953  def get_resolution_key():
954  """get_resolution_key() -> FloatKey"""
955  return _IMP_pmi.Resolution_get_resolution_key()
956 
957  get_resolution_key = staticmethod(get_resolution_key)
958 
959  def add_attribute(self, *args):
960  """
961  add_attribute(Resolution self, FloatKey k, IMP::Float v, bool opt)
962  add_attribute(Resolution self, FloatKey a0, IMP::Float a1)
963  add_attribute(Resolution self, IntKey a0, IMP::Int a1)
964  add_attribute(Resolution self, FloatsKey a0, IMP::Floats a1)
965  add_attribute(Resolution self, IntsKey a0, IMP::Ints a1)
966  add_attribute(Resolution self, StringKey a0, IMP::String a1)
967  add_attribute(Resolution self, ParticleIndexKey a0, Particle a1)
968  add_attribute(Resolution self, ObjectKey a0, Object a1)
969  """
970  return _IMP_pmi.Resolution_add_attribute(self, *args)
971 
972 
973  def get_value(self, *args):
974  """
975  get_value(Resolution self, FloatKey a0) -> IMP::Float
976  get_value(Resolution self, IntKey a0) -> IMP::Int
977  get_value(Resolution self, FloatsKey a0) -> IMP::Floats
978  get_value(Resolution self, IntsKey a0) -> IMP::Ints
979  get_value(Resolution self, StringKey a0) -> IMP::String
980  get_value(Resolution self, ParticleIndexKey a0) -> Particle
981  get_value(Resolution self, ObjectKey a0) -> Object
982  """
983  return _IMP_pmi.Resolution_get_value(self, *args)
984 
985 
986  def set_value(self, *args):
987  """
988  set_value(Resolution self, FloatKey a0, IMP::Float a1)
989  set_value(Resolution self, IntKey a0, IMP::Int a1)
990  set_value(Resolution self, FloatsKey a0, IMP::Floats a1)
991  set_value(Resolution self, IntsKey a0, IMP::Ints a1)
992  set_value(Resolution self, StringKey a0, IMP::String a1)
993  set_value(Resolution self, ParticleIndexKey a0, Particle a1)
994  set_value(Resolution self, ObjectKey a0, Object a1)
995  """
996  return _IMP_pmi.Resolution_set_value(self, *args)
997 
998 
999  def remove_attribute(self, *args):
1000  """
1001  remove_attribute(Resolution self, FloatKey a0)
1002  remove_attribute(Resolution self, IntKey a0)
1003  remove_attribute(Resolution self, FloatsKey a0)
1004  remove_attribute(Resolution self, IntsKey a0)
1005  remove_attribute(Resolution self, StringKey a0)
1006  remove_attribute(Resolution self, ParticleIndexKey a0)
1007  remove_attribute(Resolution self, ObjectKey a0)
1008  """
1009  return _IMP_pmi.Resolution_remove_attribute(self, *args)
1010 
1011 
1012  def has_attribute(self, *args):
1013  """
1014  has_attribute(Resolution self, FloatKey a0) -> bool
1015  has_attribute(Resolution self, IntKey a0) -> bool
1016  has_attribute(Resolution self, FloatsKey a0) -> bool
1017  has_attribute(Resolution self, IntsKey a0) -> bool
1018  has_attribute(Resolution self, StringKey a0) -> bool
1019  has_attribute(Resolution self, ParticleIndexKey a0) -> bool
1020  has_attribute(Resolution self, ObjectKey a0) -> bool
1021  """
1022  return _IMP_pmi.Resolution_has_attribute(self, *args)
1023 
1024 
1025  def get_derivative(self, a0):
1026  """get_derivative(Resolution self, FloatKey a0) -> double"""
1027  return _IMP_pmi.Resolution_get_derivative(self, a0)
1028 
1029 
1030  def get_name(self):
1031  """get_name(Resolution self) -> std::string"""
1032  return _IMP_pmi.Resolution_get_name(self)
1033 
1034 
1035  def clear_caches(self):
1036  """clear_caches(Resolution self)"""
1037  return _IMP_pmi.Resolution_clear_caches(self)
1038 
1039 
1040  def set_name(self, a0):
1041  """set_name(Resolution self, std::string a0)"""
1042  return _IMP_pmi.Resolution_set_name(self, a0)
1043 
1044 
1045  def set_check_level(self, a0):
1046  """set_check_level(Resolution self, IMP::CheckLevel a0)"""
1047  return _IMP_pmi.Resolution_set_check_level(self, a0)
1048 
1049 
1050  def add_to_derivative(self, a0, a1, a2):
1051  """add_to_derivative(Resolution self, FloatKey a0, double a1, DerivativeAccumulator a2)"""
1052  return _IMP_pmi.Resolution_add_to_derivative(self, a0, a1, a2)
1053 
1054 
1055  def set_is_optimized(self, a0, a1):
1056  """set_is_optimized(Resolution self, FloatKey a0, bool a1)"""
1057  return _IMP_pmi.Resolution_set_is_optimized(self, a0, a1)
1058 
1059 
1060  def get_is_optimized(self, a0):
1061  """get_is_optimized(Resolution self, FloatKey a0) -> bool"""
1062  return _IMP_pmi.Resolution_get_is_optimized(self, a0)
1063 
1064 
1065  def get_check_level(self):
1066  """get_check_level(Resolution self) -> IMP::CheckLevel"""
1067  return _IMP_pmi.Resolution_get_check_level(self)
1068 
1069 
1070  def __eq__(self, *args):
1071  """
1072  __eq__(Resolution self, Resolution o) -> bool
1073  __eq__(Resolution self, Particle d) -> bool
1074  """
1075  return _IMP_pmi.Resolution___eq__(self, *args)
1076 
1077 
1078  def __ne__(self, *args):
1079  """
1080  __ne__(Resolution self, Resolution o) -> bool
1081  __ne__(Resolution self, Particle d) -> bool
1082  """
1083  return _IMP_pmi.Resolution___ne__(self, *args)
1084 
1085 
1086  def __le__(self, *args):
1087  """
1088  __le__(Resolution self, Resolution o) -> bool
1089  __le__(Resolution self, Particle d) -> bool
1090  """
1091  return _IMP_pmi.Resolution___le__(self, *args)
1092 
1093 
1094  def __lt__(self, *args):
1095  """
1096  __lt__(Resolution self, Resolution o) -> bool
1097  __lt__(Resolution self, Particle d) -> bool
1098  """
1099  return _IMP_pmi.Resolution___lt__(self, *args)
1100 
1101 
1102  def __ge__(self, *args):
1103  """
1104  __ge__(Resolution self, Resolution o) -> bool
1105  __ge__(Resolution self, Particle d) -> bool
1106  """
1107  return _IMP_pmi.Resolution___ge__(self, *args)
1108 
1109 
1110  def __gt__(self, *args):
1111  """
1112  __gt__(Resolution self, Resolution o) -> bool
1113  __gt__(Resolution self, Particle d) -> bool
1114  """
1115  return _IMP_pmi.Resolution___gt__(self, *args)
1116 
1117 
1118  def __hash__(self):
1119  """__hash__(Resolution self) -> std::size_t"""
1120  return _IMP_pmi.Resolution___hash__(self)
1121 
1122 
1123  def __str__(self):
1124  """__str__(Resolution self) -> std::string"""
1125  return _IMP_pmi.Resolution___str__(self)
1126 
1127 
1128  def __repr__(self):
1129  """__repr__(Resolution self) -> std::string"""
1130  return _IMP_pmi.Resolution___repr__(self)
1131 
1132  __swig_destroy__ = _IMP_pmi.delete_Resolution
1133  __del__ = lambda self: None
1134 Resolution_swigregister = _IMP_pmi.Resolution_swigregister
1135 Resolution_swigregister(Resolution)
1136 
1137 def Resolution_get_is_setup(*args):
1138  """
1139  get_is_setup(Model m, ParticleIndex pi) -> bool
1140  Resolution_get_is_setup(_ParticleAdaptor p) -> bool
1141  """
1142  return _IMP_pmi.Resolution_get_is_setup(*args)
1143 
1144 def Resolution_setup_particle(*args):
1145  """
1146  setup_particle(Model m, ParticleIndex pi, IMP::Float resolution) -> Resolution
1147  Resolution_setup_particle(_ParticleAdaptor decorator, IMP::Float resolution) -> Resolution
1148  """
1149  return _IMP_pmi.Resolution_setup_particle(*args)
1150 
1151 def Resolution_get_resolution_key():
1152  """Resolution_get_resolution_key() -> FloatKey"""
1153  return _IMP_pmi.Resolution_get_resolution_key()
1154 
1155 class Symmetric(IMP.Decorator):
1156  """Proxy of C++ IMP::pmi::Symmetric class."""
1157 
1158  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1159 
1160  def get_symmetric(self):
1161  """get_symmetric(Symmetric self) -> IMP::Float"""
1162  return _IMP_pmi.Symmetric_get_symmetric(self)
1163 
1164 
1165  def set_symmetric(self, d):
1166  """set_symmetric(Symmetric self, IMP::Float d)"""
1167  return _IMP_pmi.Symmetric_set_symmetric(self, d)
1168 
1169 
1170  def __init__(self, *args):
1171  """
1172  __init__(IMP::pmi::Symmetric self) -> Symmetric
1173  __init__(IMP::pmi::Symmetric self, Model m, ParticleIndex id) -> Symmetric
1174  __init__(IMP::pmi::Symmetric self, _ParticleAdaptor d) -> Symmetric
1175  """
1176  this = _IMP_pmi.new_Symmetric(*args)
1177  try:
1178  self.this.append(this)
1179  except __builtin__.Exception:
1180  self.this = this
1181 
1182  def get_is_setup(*args):
1183  """
1184  get_is_setup(Model m, ParticleIndex pi) -> bool
1185  get_is_setup(_ParticleAdaptor p) -> bool
1186  """
1187  return _IMP_pmi.Symmetric_get_is_setup(*args)
1188 
1189  get_is_setup = staticmethod(get_is_setup)
1190 
1191  def show(self, *args):
1192  """
1193  show(Symmetric self, _ostream out)
1194  show(Symmetric self)
1195  """
1196  return _IMP_pmi.Symmetric_show(self, *args)
1197 
1198 
1199  def setup_particle(*args):
1200  """
1201  setup_particle(Model m, ParticleIndex pi, IMP::Float symmetric) -> Symmetric
1202  setup_particle(_ParticleAdaptor decorator, IMP::Float symmetric) -> Symmetric
1203  """
1204  return _IMP_pmi.Symmetric_setup_particle(*args)
1205 
1206  setup_particle = staticmethod(setup_particle)
1207 
1208  def get_symmetric_key():
1209  """get_symmetric_key() -> FloatKey"""
1210  return _IMP_pmi.Symmetric_get_symmetric_key()
1211 
1212  get_symmetric_key = staticmethod(get_symmetric_key)
1213 
1214  def add_attribute(self, *args):
1215  """
1216  add_attribute(Symmetric self, FloatKey k, IMP::Float v, bool opt)
1217  add_attribute(Symmetric self, FloatKey a0, IMP::Float a1)
1218  add_attribute(Symmetric self, IntKey a0, IMP::Int a1)
1219  add_attribute(Symmetric self, FloatsKey a0, IMP::Floats a1)
1220  add_attribute(Symmetric self, IntsKey a0, IMP::Ints a1)
1221  add_attribute(Symmetric self, StringKey a0, IMP::String a1)
1222  add_attribute(Symmetric self, ParticleIndexKey a0, Particle a1)
1223  add_attribute(Symmetric self, ObjectKey a0, Object a1)
1224  """
1225  return _IMP_pmi.Symmetric_add_attribute(self, *args)
1226 
1227 
1228  def get_value(self, *args):
1229  """
1230  get_value(Symmetric self, FloatKey a0) -> IMP::Float
1231  get_value(Symmetric self, IntKey a0) -> IMP::Int
1232  get_value(Symmetric self, FloatsKey a0) -> IMP::Floats
1233  get_value(Symmetric self, IntsKey a0) -> IMP::Ints
1234  get_value(Symmetric self, StringKey a0) -> IMP::String
1235  get_value(Symmetric self, ParticleIndexKey a0) -> Particle
1236  get_value(Symmetric self, ObjectKey a0) -> Object
1237  """
1238  return _IMP_pmi.Symmetric_get_value(self, *args)
1239 
1240 
1241  def set_value(self, *args):
1242  """
1243  set_value(Symmetric self, FloatKey a0, IMP::Float a1)
1244  set_value(Symmetric self, IntKey a0, IMP::Int a1)
1245  set_value(Symmetric self, FloatsKey a0, IMP::Floats a1)
1246  set_value(Symmetric self, IntsKey a0, IMP::Ints a1)
1247  set_value(Symmetric self, StringKey a0, IMP::String a1)
1248  set_value(Symmetric self, ParticleIndexKey a0, Particle a1)
1249  set_value(Symmetric self, ObjectKey a0, Object a1)
1250  """
1251  return _IMP_pmi.Symmetric_set_value(self, *args)
1252 
1253 
1254  def remove_attribute(self, *args):
1255  """
1256  remove_attribute(Symmetric self, FloatKey a0)
1257  remove_attribute(Symmetric self, IntKey a0)
1258  remove_attribute(Symmetric self, FloatsKey a0)
1259  remove_attribute(Symmetric self, IntsKey a0)
1260  remove_attribute(Symmetric self, StringKey a0)
1261  remove_attribute(Symmetric self, ParticleIndexKey a0)
1262  remove_attribute(Symmetric self, ObjectKey a0)
1263  """
1264  return _IMP_pmi.Symmetric_remove_attribute(self, *args)
1265 
1266 
1267  def has_attribute(self, *args):
1268  """
1269  has_attribute(Symmetric self, FloatKey a0) -> bool
1270  has_attribute(Symmetric self, IntKey a0) -> bool
1271  has_attribute(Symmetric self, FloatsKey a0) -> bool
1272  has_attribute(Symmetric self, IntsKey a0) -> bool
1273  has_attribute(Symmetric self, StringKey a0) -> bool
1274  has_attribute(Symmetric self, ParticleIndexKey a0) -> bool
1275  has_attribute(Symmetric self, ObjectKey a0) -> bool
1276  """
1277  return _IMP_pmi.Symmetric_has_attribute(self, *args)
1278 
1279 
1280  def get_derivative(self, a0):
1281  """get_derivative(Symmetric self, FloatKey a0) -> double"""
1282  return _IMP_pmi.Symmetric_get_derivative(self, a0)
1283 
1284 
1285  def get_name(self):
1286  """get_name(Symmetric self) -> std::string"""
1287  return _IMP_pmi.Symmetric_get_name(self)
1288 
1289 
1290  def clear_caches(self):
1291  """clear_caches(Symmetric self)"""
1292  return _IMP_pmi.Symmetric_clear_caches(self)
1293 
1294 
1295  def set_name(self, a0):
1296  """set_name(Symmetric self, std::string a0)"""
1297  return _IMP_pmi.Symmetric_set_name(self, a0)
1298 
1299 
1300  def set_check_level(self, a0):
1301  """set_check_level(Symmetric self, IMP::CheckLevel a0)"""
1302  return _IMP_pmi.Symmetric_set_check_level(self, a0)
1303 
1304 
1305  def add_to_derivative(self, a0, a1, a2):
1306  """add_to_derivative(Symmetric self, FloatKey a0, double a1, DerivativeAccumulator a2)"""
1307  return _IMP_pmi.Symmetric_add_to_derivative(self, a0, a1, a2)
1308 
1309 
1310  def set_is_optimized(self, a0, a1):
1311  """set_is_optimized(Symmetric self, FloatKey a0, bool a1)"""
1312  return _IMP_pmi.Symmetric_set_is_optimized(self, a0, a1)
1313 
1314 
1315  def get_is_optimized(self, a0):
1316  """get_is_optimized(Symmetric self, FloatKey a0) -> bool"""
1317  return _IMP_pmi.Symmetric_get_is_optimized(self, a0)
1318 
1319 
1320  def get_check_level(self):
1321  """get_check_level(Symmetric self) -> IMP::CheckLevel"""
1322  return _IMP_pmi.Symmetric_get_check_level(self)
1323 
1324 
1325  def __eq__(self, *args):
1326  """
1327  __eq__(Symmetric self, Symmetric o) -> bool
1328  __eq__(Symmetric self, Particle d) -> bool
1329  """
1330  return _IMP_pmi.Symmetric___eq__(self, *args)
1331 
1332 
1333  def __ne__(self, *args):
1334  """
1335  __ne__(Symmetric self, Symmetric o) -> bool
1336  __ne__(Symmetric self, Particle d) -> bool
1337  """
1338  return _IMP_pmi.Symmetric___ne__(self, *args)
1339 
1340 
1341  def __le__(self, *args):
1342  """
1343  __le__(Symmetric self, Symmetric o) -> bool
1344  __le__(Symmetric self, Particle d) -> bool
1345  """
1346  return _IMP_pmi.Symmetric___le__(self, *args)
1347 
1348 
1349  def __lt__(self, *args):
1350  """
1351  __lt__(Symmetric self, Symmetric o) -> bool
1352  __lt__(Symmetric self, Particle d) -> bool
1353  """
1354  return _IMP_pmi.Symmetric___lt__(self, *args)
1355 
1356 
1357  def __ge__(self, *args):
1358  """
1359  __ge__(Symmetric self, Symmetric o) -> bool
1360  __ge__(Symmetric self, Particle d) -> bool
1361  """
1362  return _IMP_pmi.Symmetric___ge__(self, *args)
1363 
1364 
1365  def __gt__(self, *args):
1366  """
1367  __gt__(Symmetric self, Symmetric o) -> bool
1368  __gt__(Symmetric self, Particle d) -> bool
1369  """
1370  return _IMP_pmi.Symmetric___gt__(self, *args)
1371 
1372 
1373  def __hash__(self):
1374  """__hash__(Symmetric self) -> std::size_t"""
1375  return _IMP_pmi.Symmetric___hash__(self)
1376 
1377 
1378  def __str__(self):
1379  """__str__(Symmetric self) -> std::string"""
1380  return _IMP_pmi.Symmetric___str__(self)
1381 
1382 
1383  def __repr__(self):
1384  """__repr__(Symmetric self) -> std::string"""
1385  return _IMP_pmi.Symmetric___repr__(self)
1386 
1387  __swig_destroy__ = _IMP_pmi.delete_Symmetric
1388  __del__ = lambda self: None
1389 Symmetric_swigregister = _IMP_pmi.Symmetric_swigregister
1390 Symmetric_swigregister(Symmetric)
1391 
1392 def Symmetric_get_is_setup(*args):
1393  """
1394  get_is_setup(Model m, ParticleIndex pi) -> bool
1395  Symmetric_get_is_setup(_ParticleAdaptor p) -> bool
1396  """
1397  return _IMP_pmi.Symmetric_get_is_setup(*args)
1398 
1399 def Symmetric_setup_particle(*args):
1400  """
1401  setup_particle(Model m, ParticleIndex pi, IMP::Float symmetric) -> Symmetric
1402  Symmetric_setup_particle(_ParticleAdaptor decorator, IMP::Float symmetric) -> Symmetric
1403  """
1404  return _IMP_pmi.Symmetric_setup_particle(*args)
1405 
1406 def Symmetric_get_symmetric_key():
1407  """Symmetric_get_symmetric_key() -> FloatKey"""
1408  return _IMP_pmi.Symmetric_get_symmetric_key()
1409 
1410 class TransformMover(IMP.core.MonteCarloMover):
1411  """Proxy of C++ IMP::pmi::TransformMover class."""
1412 
1413  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1414 
1415  def __init__(self, *args):
1416  """
1417  __init__(IMP::pmi::TransformMover self, Model m, IMP::Float max_translation, IMP::Float max_rotation) -> TransformMover
1418  __init__(IMP::pmi::TransformMover self, Model m, Vector3D axis, IMP::Float max_translation, IMP::Float max_rotation) -> TransformMover
1419  __init__(IMP::pmi::TransformMover self, Model m, _ParticleIndexAdaptor p1i, _ParticleIndexAdaptor p2i, IMP::Float max_translation, IMP::Float max_rotation) -> TransformMover
1420  """
1421  this = _IMP_pmi.new_TransformMover(*args)
1422  try:
1423  self.this.append(this)
1424  except __builtin__.Exception:
1425  self.this = this
1426 
1427  def add_xyz_particle(self, pi):
1428  """add_xyz_particle(TransformMover self, _ParticleIndexAdaptor pi)"""
1429  return _IMP_pmi.TransformMover_add_xyz_particle(self, pi)
1430 
1431 
1432  def add_rigid_body_particle(self, pi):
1433  """add_rigid_body_particle(TransformMover self, _ParticleIndexAdaptor pi)"""
1434  return _IMP_pmi.TransformMover_add_rigid_body_particle(self, pi)
1435 
1436 
1437  def set_maximum_translation(self, mt):
1438  """set_maximum_translation(TransformMover self, IMP::Float mt)"""
1439  return _IMP_pmi.TransformMover_set_maximum_translation(self, mt)
1440 
1441 
1442  def set_maximum_rotation(self, mr):
1443  """set_maximum_rotation(TransformMover self, IMP::Float mr)"""
1444  return _IMP_pmi.TransformMover_set_maximum_rotation(self, mr)
1445 
1446 
1447  def get_maximum_translation(self):
1448  """get_maximum_translation(TransformMover self) -> IMP::Float"""
1449  return _IMP_pmi.TransformMover_get_maximum_translation(self)
1450 
1451 
1452  def get_maximum_rotation(self):
1453  """get_maximum_rotation(TransformMover self) -> IMP::Float"""
1454  return _IMP_pmi.TransformMover_get_maximum_rotation(self)
1455 
1456 
1457  def get_last_transformation(self):
1458  """get_last_transformation(TransformMover self) -> Transformation3D"""
1459  return _IMP_pmi.TransformMover_get_last_transformation(self)
1460 
1461 
1462  def get_version_info(self):
1463  """get_version_info(TransformMover self) -> VersionInfo"""
1464  return _IMP_pmi.TransformMover_get_version_info(self)
1465 
1466 
1467  def __str__(self):
1468  """__str__(TransformMover self) -> std::string"""
1469  return _IMP_pmi.TransformMover___str__(self)
1470 
1471 
1472  def __repr__(self):
1473  """__repr__(TransformMover self) -> std::string"""
1474  return _IMP_pmi.TransformMover___repr__(self)
1475 
1476 
1477  @staticmethod
1478  def get_from(o):
1479  return _object_cast_to_TransformMover(o)
1480 
1481 TransformMover_swigregister = _IMP_pmi.TransformMover_swigregister
1482 TransformMover_swigregister(TransformMover)
1483 
1484 
1485 def create_elastic_network(ps, dist_cutoff, strength):
1486  """create_elastic_network(IMP::Particles const & ps, IMP::Float dist_cutoff, IMP::Float strength) -> RestraintSet"""
1487  return _IMP_pmi.create_elastic_network(ps, dist_cutoff, strength)
1488 
1489 def get_dihedral_angle(p1, p2, p3, p4):
1490  """get_dihedral_angle(Atom p1, Atom p2, Atom p3, Atom p4) -> IMP::Float"""
1491  return _IMP_pmi.get_dihedral_angle(p1, p2, p3, p4)
1492 
1493 def get_bipartite_minimum_sphere_distance(m1, m2):
1494  """get_bipartite_minimum_sphere_distance(IMP::core::XYZRs const & m1, IMP::core::XYZRs const & m2) -> IMP::Float"""
1495  return _IMP_pmi.get_bipartite_minimum_sphere_distance(m1, m2)
1496 
1497 def get_list_of_bipartite_minimum_sphere_distance(pss):
1498  """get_list_of_bipartite_minimum_sphere_distance(IMP::ParticlesTemps const & pss) -> IMP::Floats"""
1499  return _IMP_pmi.get_list_of_bipartite_minimum_sphere_distance(pss)
1500 
1502  """get_molecule_name_and_copy(Hierarchy h) -> std::string"""
1503  return _IMP_pmi.get_molecule_name_and_copy(h)
1504 
1505 def get_is_canonical(h):
1506  """get_is_canonical(Hierarchy h) -> bool"""
1507  return _IMP_pmi.get_is_canonical(h)
1508 class InternalCoordinatesConstraint(IMP.SingletonModifier):
1509  """Proxy of C++ IMP::pmi::InternalCoordinatesConstraint class."""
1510 
1511  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1512 
1513  def __init__(self):
1514  """__init__(IMP::pmi::InternalCoordinatesConstraint self) -> InternalCoordinatesConstraint"""
1515  this = _IMP_pmi.new_InternalCoordinatesConstraint()
1516  try:
1517  self.this.append(this)
1518  except __builtin__.Exception:
1519  self.this = this
1520 
1521  def do_get_inputs(self, m, pis):
1522  """do_get_inputs(InternalCoordinatesConstraint self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
1523  return _IMP_pmi.InternalCoordinatesConstraint_do_get_inputs(self, m, pis)
1524 
1525 
1526  def do_get_outputs(self, m, pis):
1527  """do_get_outputs(InternalCoordinatesConstraint self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
1528  return _IMP_pmi.InternalCoordinatesConstraint_do_get_outputs(self, m, pis)
1529 
1530 
1531  def get_version_info(self):
1532  """get_version_info(InternalCoordinatesConstraint self) -> VersionInfo"""
1533  return _IMP_pmi.InternalCoordinatesConstraint_get_version_info(self)
1534 
1535 
1536  def __str__(self):
1537  """__str__(InternalCoordinatesConstraint self) -> std::string"""
1538  return _IMP_pmi.InternalCoordinatesConstraint___str__(self)
1539 
1540 
1541  def __repr__(self):
1542  """__repr__(InternalCoordinatesConstraint self) -> std::string"""
1543  return _IMP_pmi.InternalCoordinatesConstraint___repr__(self)
1544 
1545 
1546  @staticmethod
1547  def get_from(o):
1548  return _object_cast_to_InternalCoordinatesConstraint(o)
1549 
1550 InternalCoordinatesConstraint_swigregister = _IMP_pmi.InternalCoordinatesConstraint_swigregister
1551 InternalCoordinatesConstraint_swigregister(InternalCoordinatesConstraint)
1552 
1553 
1554 def get_module_version():
1555  """get_module_version() -> std::string const"""
1556  return _IMP_pmi.get_module_version()
1557 
1558 def get_example_path(fname):
1559  """get_example_path(std::string fname) -> std::string"""
1560  return _IMP_pmi.get_example_path(fname)
1561 
1562 def get_data_path(fname):
1563  """get_data_path(std::string fname) -> std::string"""
1564  return _IMP_pmi.get_data_path(fname)
1565 
1566 from . import _version_check
1567 _version_check.check_version(get_module_version())
1568 __version__ = get_module_version()
1569 
1570 
1571 
A base class for modifiers of ParticlesTemp.
CheckLevel get_check_level()
Get the current audit mode.
Definition: exception.h:81
A base class for ISD Restraints.
Various classes to hold sets of particles.
Make CGAL functionality available to IMP.
std::string get_data_path(std::string file_name)
Return the full path to one of this module's data files.
std::string get_module_version()
Return the version of this module, as a string.
std::string get_example_path(std::string file_name)
Return the full path to one of this module's example files.
Composable functors to implement scores via compile-time composition.
Code to compute statistical measures.
Warning related to handling of structures.
std::string get_molecule_name_and_copy(atom::Hierarchy h)
Walk up a PMI2 hierarchy/representations and get the "molname.copynum".
Definition: pmi/utilities.h:85
RestraintSet * create_elastic_network(const Particles &ps, Float dist_cutoff, Float strength)
Create an elastic network restraint set.
Definition: pmi/utilities.h:26
A base class for classes which perturb particles.
Basic utilities for handling cryo-electron microscopy 3D density maps.
Warning for an expected, but missing, file.
bool get_is_canonical(atom::Hierarchy h)
Walk up a PMI2 hierarchy/representations and check if the root is named System.
Definition: pmi/utilities.h:91
Interface to specialized Particle types (e.g. atoms)
Definition: Decorator.h:118
std::ostream & show(Hierarchy h, std::ostream &out=std::cout)
Print the hierarchy using a given decorator to display each node.
Basic functionality that is expected to be used by a wide variety of IMP users.
General purpose algebraic and geometric methods that are expected to be used by a wide variety of IMP...
double get_resolution(Model *m, ParticleIndex pi)
Estimate the resolution of the hierarchy as used by Representation.
Output IMP model data in various file formats.
Functionality for loading, creating, manipulating and scoring atomic structures.
Support for small angle X-ray scattering (SAXS) data.
void set_check_level(CheckLevel tf)
Control runtime checks in the code.
Definition: exception.h:73
Inferential scoring building on methods developed as part of the Inferential Structure Determination ...
A restraint is a term in an IMP ScoringFunction.
Definition: Restraint.h:54