IMP Reference Guide
2.14.0
The Integrative Modeling Platform
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Utility functions to handle IO. More...
Utility functions to handle IO.
Classes | |
class | ReferenceFrameToText |
Transform a IMP reference frame into parseable output. More... | |
class | Transformation3DToText |
Parseable output for a IMP Transformation3D. More... | |
Functions | |
def | get_particles_from_points |
Simply creates IMP particles from a set of 2D points model - is the model to store the particles. More... | |
def | imp_info |
Returns text with the time and information about the modules employed imp_modules is the set of modules whose infos are requested. More... | |
def | read_reference_frames |
Read the reference frames contained in a solutions file from sampling n is the maximum number of ref frames to read. More... | |
def | read_transforms |
Read a file of IMP.algebra.Transformation3D. More... | |
def | write_particles_as_text |
Writes a set of particles with coordinates to a file. More... | |
def | write_pdb_for_reference_frames |
Read the PDB files, apply reference frames to them, and write a pdb. More... | |
def | write_transforms |
Write a file with the Transformation3Ds contained in Ts. More... | |
def | write_vectors_in_multifit2_format |
writes a text files in the format required for point alignment in multifit2 More... | |
def IMP.EMageFit.imp_general.io.get_particles_from_points | ( | points, | |
model | |||
) |
def IMP.EMageFit.imp_general.io.imp_info | ( | imp_modules = None | ) |
def IMP.EMageFit.imp_general.io.read_reference_frames | ( | fn, | |
n = 10 |
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) |
Read the reference frames contained in a solutions file from sampling n is the maximum number of ref frames to read.
NOTE: Currently the function returns only the reference frames and discards the score, the first element of a row
def IMP.EMageFit.imp_general.io.read_transforms | ( | fn, | |
n = False |
|||
) |
Read a file of IMP.algebra.Transformation3D.
The it is assumed that the transformations are the only thing contained in a line
def IMP.EMageFit.imp_general.io.write_particles_as_text | ( | leaves, | |
fn_output | |||
) |
def IMP.EMageFit.imp_general.io.write_pdb_for_reference_frames | ( | fn_pdbs, | |
refs_texts, | |||
fn_output | |||
) |
def IMP.EMageFit.imp_general.io.write_transforms | ( | Ts, | |
fn | |||
) |