IMP Reference Guide
2.14.0
The Integrative Modeling Platform
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Classes to manage a model using DOMINO. More...
Classes to manage a model using DOMINO.
Classes | |
class | DominoModel |
Management of a model using DOMINO. More... | |
Functions | |
def | anchor_assembly |
"Anchor" a set of rigid bodies, by setting the position of one of them at the origin (0,0,0). More... | |
def | get_coordinates |
Return a list of the coordinates of all the members of the rigid bodies. More... | |
def | measure_model |
Get the drms, cdrms and crmsd for a model. More... | |
def IMP.EMageFit.domino_model.anchor_assembly | ( | components_rbs, | |
anchored | |||
) |
"Anchor" a set of rigid bodies, by setting the position of one of them at the origin (0,0,0).
components_rbs | Rigid bodies of the components |
anchored | - List of True/False values indicating if the components of the assembly are anchored. The function sets the FIRST anchored component in the (0,0,0) coordinate and moves the other components with the same translation. If all the values are False, the function does not do anything |
Definition at line 1008 of file domino_model.py.
def IMP.EMageFit.domino_model.get_coordinates | ( | rigid_bodies | ) |
Return a list of the coordinates of all the members of the rigid bodies.
Definition at line 1065 of file domino_model.py.
def IMP.EMageFit.domino_model.measure_model | ( | assembly, | |
native_assembly, | |||
rbs, | |||
native_rbs | |||
) |
Get the drms, cdrms and crmsd for a model.
assembly | Hierarchy for an assembly |
native_assembly | Hierarchy of the native structure |
rbs | Rigid bodies for the components of the assembly |
native_rbs | Rigid bodies for the components of the native structure |
Definition at line 1039 of file domino_model.py.