IMP.sampcon.precision_rmsd.GetModelDensity Class Reference

Compute mean density maps from structures. More...

Inherits object.

Detailed Description

Compute mean density maps from structures.

Keeps a dictionary of density maps, keys are in the custom ranges. When you call add_subunits_density, it adds particle coordinates to the existing density maps.

Note

This class is only available in Python.

Definition at line 92 of file precision_rmsd.py.

Public Member Functions
def	__init__
	Constructor. More...
def	add_subunits_density
	Add a frame to the densities. More...
def	get_density
	Get the current density for some component name. More...

Constructor & Destructor Documentation

def IMP.sampcon.precision_rmsd.GetModelDensity.__init__	(		self,
			custom_ranges = None,
			resolution = 20.0,
			voxel = 5.0,
			bead_names = None
	)

Constructor.

Parameters

list	of particles decorated with mass, radius, and XYZ
resolution	The MRC resolution of the output map (in Angstrom unit)
voxel	The voxel size for the output map (lower is slower)

Definition at line 99 of file precision_rmsd.py.

Member Function Documentation

def IMP.sampcon.precision_rmsd.GetModelDensity.add_subunits_density	(		self,
			ps
	)

Add a frame to the densities.

Parameters

ps	List of particles decorated with XYZR and Mass.

Definition at line 188 of file precision_rmsd.py.

def IMP.sampcon.precision_rmsd.GetModelDensity.get_density	(		self,
			name
	)

Get the current density for some component name.

Definition at line 210 of file precision_rmsd.py.

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The documentation for this class was generated from the following file:

• precision_rmsd.py