Detailed Description

Simultaneous sampling of diheral angles and fibril symmetry operations.

Definition at line 25 of file FibrilSampler.h.

Public Member Functions
	FibrilSampler (TransformationJoints trans_joint, DihedralAngleRevoluteJoints dihedral_joints, DOFs dofs)

virtual void	apply (const DOFValues &values)

virtual void	apply_floats (const Floats &values)

DihedralAngleRevoluteJoints	get_dihedral_joints ()

TransformationJoints	get_transformation_joint ()

Public Member Functions inherited from IMP::kinematics::DOFsSampler
	DOFsSampler (DOFs dofs)
	Constructs the dofs sampler over specified dofs. More...

void	apply_last_sample ()

DOF const *	get_dof (unsigned int i) const
	Returns the i'th dof over which this sampler works. More...

DOFs const &	get_dofs () const
	Returns the dofs over which this sampler works. More...

unsigned int	get_number_of_dofs () const

DOFValues	get_sample () const

virtual std::string	get_type_name () const

virtual ::IMP::VersionInfo	get_version_info () const
	Get information about the module and version of the object. More...

void	sample_and_apply ()

Public Member Functions inherited from IMP::Object
virtual void	clear_caches ()

CheckLevel	get_check_level () const

LogLevel	get_log_level () const

void	set_check_level (CheckLevel l)

void	set_log_level (LogLevel l)
	Set the logging level used in this object. More...

void	set_was_used (bool tf) const

void	show (std::ostream &out=std::cout) const

const std::string &	get_name () const

void	set_name (std::string name)

Protected Member Functions
virtual DOFValues	do_get_sample () const

Protected Member Functions inherited from IMP::Object
	Object (std::string name)
	Construct an object with the given name. More...

virtual void	do_destroy ()

Constructor & Destructor Documentation

IMP::kinematics::FibrilSampler::FibrilSampler	(	TransformationJoints	trans_joint,
		DihedralAngleRevoluteJoints	dihedral_joints,
		DOFs	dofs
	)

Construct a sampler that samples uniformly a set of backbone (and chi) dihedrals as well as

Parameters

trans_joint	A TransformationJoint that contains the XYZ position of the fibril root node as well as the pitch/roll/yaw of the fibril principal vectors wrs: Y-axis
dihedral_joints	the dihedral joints over which to sample uniformly
dofs	corresponding list of dofs for each joint in trans_joint + dihedral_joints respectively, with information about minimal / maximal dof values, etc.

virtual void IMP::kinematics::FibrilSampler::apply ( const DOFValues & values )

virtual

apply set of dof values in values over objects associated with this DOFsSampler (e.g., joints)

The documentation for this class was generated from the following file: