IMP::em2d::SingleLinkage Class Reference

Functor for hierarchical clustering based on single linkage. More...

#include <IMP/em2d/hierarchical_clustering.h>

Detailed Description

Functor for hierarchical clustering based on single linkage.

Definition at line 111 of file hierarchical_clustering.h.

Public Member Functions
double	operator() (unsigned int id1, unsigned int id2, const ClusterSet &cluster_set, const FloatsList &distances) const
void	show (std::ostream &out) const

Member Function Documentation

double IMP::em2d::SingleLinkage::operator()	(	unsigned int	id1,
		unsigned int	id2,
		const ClusterSet &	cluster_set,
		const FloatsList &	distances
	)		const

Parameters

[in]	id1	identity of cluster 1 to merge
[in]	id2	identity of cluster 2 to merge
[in]	cluster_set	linkage matrix describing the contents of clusters so far.
[in]	distances	A NxN matrix of distances(i,j) between the individual members to cluster

Returns

Minimal distance between members of the clusters

Note

the id of an isolated member n<N is n. The id of the cluster formed at step i is i+N.

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The documentation for this class was generated from the following file:

• hierarchical_clustering.h