IMP Reference Guide
2.14.0
The Integrative Modeling Platform
|
Fit rigid bodies to an image. More...
#include <IMP/em2d/RigidBodiesImageFitRestraint.h>
Fit rigid bodies to an image.
Definition at line 43 of file RigidBodiesImageFitRestraint.h.
Public Member Functions | |
RigidBodiesImageFitRestraint (ScoreFunction *scf, const core::RigidBodies &rbs, Image *img) | |
Initialize the class. More... | |
unsigned int | get_number_of_masks (const core::RigidBody &rb) const |
Return the number of precomputed masks associated with the rigid body. More... | |
virtual std::string | get_type_name () const |
virtual ::IMP::VersionInfo | get_version_info () const |
Get information about the module and version of the object. More... | |
void | set_orientations (const core::RigidBody &rb, const algebra::Rotation3Ds &rots) |
Set the possible rotations that a rigid body can have. More... | |
void | set_projecting_parameters (const ProjectingParameters &p) |
Public Member Functions inherited from IMP::Restraint | |
Restraint (Model *m, std::string name) | |
void | add_score_and_derivatives (ScoreAccumulator sa) const |
Perform the actual restraint scoring. More... | |
Restraint * | create_current_decomposition () const |
Decompose this restraint into constituent terms for the current conf. More... | |
Restraint * | create_decomposition () const |
Decompose this restraint into constituent terms. More... | |
virtual ScoringFunction * | create_scoring_function (double weight=1.0, double max=NO_MAX) const |
Create a scoring function with only this restraint. More... | |
virtual RestraintInfo * | get_dynamic_info () const |
virtual double | get_last_score () const |
double | get_score () const |
virtual RestraintInfo * | get_static_info () const |
bool | get_was_good () const |
void | set_weight (Float weight) |
Float | get_weight () const |
double | get_maximum_score () const |
void | set_maximum_score (double s) |
Public Member Functions inherited from IMP::ModelObject | |
ModelObject (Model *m, std::string name) | |
bool | get_has_dependencies () const |
Return whether this object has dependencies computed. More... | |
bool | get_has_required_score_states () const |
Return whether score states are computed. More... | |
ModelObjectsTemp | get_inputs () const |
ModelObjectsTemps | get_interactions () const |
Get the interacting sets induced by this ModelObject. More... | |
Model * | get_model () const |
ModelObjectsTemp | get_outputs () const |
const ScoreStatesTemp & | get_required_score_states () const |
Get the score states that are ancestors of this in the dependency graph. More... | |
void | set_has_dependencies (bool tf) |
Either invalidate the dependencies or ensure they are correct. More... | |
void | set_has_required_score_states (bool tf) |
Compute the required score states. More... | |
Public Member Functions inherited from IMP::Object | |
virtual void | clear_caches () |
CheckLevel | get_check_level () const |
LogLevel | get_log_level () const |
void | set_check_level (CheckLevel l) |
void | set_log_level (LogLevel l) |
Set the logging level used in this object. More... | |
void | set_was_used (bool tf) const |
void | show (std::ostream &out=std::cout) const |
const std::string & | get_name () const |
void | set_name (std::string name) |
Protected Member Functions | |
unsigned int | get_rigid_body_index (const core::RigidBody &rb) const |
Protected Member Functions inherited from IMP::Restraint | |
virtual void | do_add_score_and_derivatives (ScoreAccumulator sa) const |
A restraint should override this to compute the score and derivatives. More... | |
virtual Restraints | do_create_current_decomposition () const |
virtual Restraints | do_create_decomposition () const |
ModelObjectsTemp | do_get_outputs () const |
Protected Member Functions inherited from IMP::ModelObject | |
virtual ModelObjectsTemps | do_get_interactions () const |
virtual void | handle_set_has_required_score_states (bool) |
Protected Member Functions inherited from IMP::Object | |
Object (std::string name) | |
Construct an object with the given name. More... | |
virtual void | do_destroy () |
Protected Attributes | |
Pointer< Image > | image_ |
KeyIndexMaps | maps_ |
ProjectingParameters | params_ |
bool | params_set_ |
Pointer< Image > | projection_ |
core::RigidBodies | rigid_bodies_ |
std::vector< em2d::Images > | rigid_bodies_masks_ |
PointerMember< ScoreFunction > | score_function_ |
IMP::em2d::RigidBodiesImageFitRestraint::RigidBodiesImageFitRestraint | ( | ScoreFunction * | scf, |
const core::RigidBodies & | rbs, | ||
Image * | img | ||
) |
Initialize the class.
[in] | scf | Score function used to compute the value of the restraint |
[in] | rbs | Rigid bodies that are restrained |
[in] | img | Image used to compute the restraint |
unsigned int IMP::em2d::RigidBodiesImageFitRestraint::get_number_of_masks | ( | const core::RigidBody & | rb | ) | const |
Return the number of precomputed masks associated with the rigid body.
ValueException | if the rigid body is not in the set used to construct the restraint |
|
virtual |
Get information about the module and version of the object.
Reimplemented from IMP::Object.
Definition at line 47 of file RigidBodiesImageFitRestraint.h.
void IMP::em2d::RigidBodiesImageFitRestraint::set_orientations | ( | const core::RigidBody & | rb, |
const algebra::Rotation3Ds & | rots | ||
) |
Set the possible rotations that a rigid body can have.
A projection of the rigid body in all possible orientations is stored