IMP Reference Guide
2.14.0
The Integrative Modeling Platform
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Set the coordinates of a particle to be a transformed version of a reference. More...
#include <IMP/core/symmetry.h>
Set the coordinates of a particle to be a transformed version of a reference.
The passed particles must be Reference particles and XYZ particles and can be RigidBody particles iff the reference particle is a rigid body.
Definition at line 76 of file core/symmetry.h.
Public Member Functions | |
TransformationSymmetry (const algebra::Transformation3D &t) | |
Create with both rotation and translation. More... | |
TransformationSymmetry (ParticleIndex rb_pi) | |
Create based on a rigid body transformation. More... | |
virtual void | apply_index (Model *m, ParticleIndex p) const |
virtual void | apply_indexes (Model *m, const ParticleIndexes &o, unsigned int lower_bound, unsigned int upper_bound) const |
virtual ModelObjectsTemp | do_get_inputs (Model *m, const ParticleIndexes &pis) const |
Overload this method to specify the inputs. More... | |
virtual ModelObjectsTemp | do_get_outputs (Model *m, const ParticleIndexes &pis) const |
Overload this method to specify the outputs. More... | |
algebra::Transformation3D | get_transformation () const |
virtual std::string | get_type_name () const |
virtual ::IMP::VersionInfo | get_version_info () const |
Get information about the module and version of the object. More... | |
void | set_transformation (algebra::Transformation3D t) |
Set a new transformation to use. More... | |
Public Member Functions inherited from IMP::SingletonModifier | |
SingletonModifier (std::string name="SingletonModifier %1%") | |
Public Member Functions inherited from IMP::ParticleInputs | |
ModelObjectsTemp | get_inputs (Model *m, const ParticleIndexes &pis) const |
Get the ModelObjects read when the given list of particles is used. More... | |
Public Member Functions inherited from IMP::ParticleOutputs | |
ModelObjectsTemp | get_outputs (Model *m, const ParticleIndexes &pis) const |
Get the ModelObjects changed when the given list of particles is used. More... | |
Public Member Functions inherited from IMP::Object | |
virtual void | clear_caches () |
CheckLevel | get_check_level () const |
LogLevel | get_log_level () const |
void | set_check_level (CheckLevel l) |
void | set_log_level (LogLevel l) |
Set the logging level used in this object. More... | |
void | set_was_used (bool tf) const |
void | show (std::ostream &out=std::cout) const |
const std::string & | get_name () const |
void | set_name (std::string name) |
Additional Inherited Members | |
Public Types inherited from IMP::SingletonModifier | |
typedef Particle * | Argument |
typedef ParticleIndex | IndexArgument |
Protected Member Functions inherited from IMP::Object | |
Object (std::string name) | |
Construct an object with the given name. More... | |
virtual void | do_destroy () |
IMP::core::TransformationSymmetry::TransformationSymmetry | ( | const algebra::Transformation3D & | t | ) |
Create with both rotation and translation.
IMP::core::TransformationSymmetry::TransformationSymmetry | ( | ParticleIndex | rb_pi | ) |
Create based on a rigid body transformation.
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Apply the function to a single value
Implements IMP::SingletonModifier.
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Apply the function to a collection of ParticlesTemp If bounds are passed, only apply to ones between the upper and lower bounds.
Reimplemented from IMP::SingletonModifier.
Definition at line 111 of file core/symmetry.h.
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Overload this method to specify the inputs.
Implements IMP::ParticleInputs.
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Overload this method to specify the outputs.
Implements IMP::ParticleOutputs.
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Get information about the module and version of the object.
Reimplemented from IMP::Object.
Definition at line 112 of file core/symmetry.h.
void IMP::core::TransformationSymmetry::set_transformation | ( | algebra::Transformation3D | t | ) |
Set a new transformation to use.
Definition at line 99 of file core/symmetry.h.