Detailed Description

Find all nearby pairs using the algebra::NearestNeighbor code.

See Also: IMP::container::ClosePairsScoreState

Definition at line 20 of file NearestNeighborsClosePairsFinder.h.

Public Member Functions
virtual ModelObjectsTemp	do_get_inputs (Model *m, const ParticleIndexes &pis) const
	Overload this method to specify the inputs. More...

virtual IntPairs	get_close_pairs (const algebra::BoundingBox3Ds &bbs) const

virtual IntPairs	get_close_pairs (const algebra::BoundingBox3Ds &bas, const algebra::BoundingBox3Ds &bbs) const

virtual ParticleIndexPairs	get_close_pairs (Model *m, const ParticleIndexes &pc) const
	return all close pairs among pc in model m More...

virtual ParticleIndexPairs	get_close_pairs (Model *m, const ParticleIndexes &pca, const ParticleIndexes &pcb) const
	return all close pairs among pc in model m More...

virtual std::string	get_type_name () const

virtual ::IMP::VersionInfo	get_version_info () const
	Get information about the module and version of the object. More...

Public Member Functions inherited from IMP::core::ClosePairsFinder
	ClosePairsFinder (std::string name)

virtual void	set_distance (double d)

double	get_distance () const

void	remove_pair_filter (PairPredicate *d)

void	remove_pair_filters (const PairPredicates &d)

void	set_pair_filters (const PairPredicates &ps)

void	set_pair_filters_order (const PairPredicates &objs)

unsigned int	add_pair_filter (PairPredicate *obj)

void	add_pair_filters (const PairPredicates &objs)

void	clear_pair_filters ()

unsigned int	get_number_of_pair_filters () const

bool	get_has_pair_filters ()

PairPredicate *	get_pair_filter (unsigned int i) const

PairPredicates	get_pair_filters () const

void	reserve_pair_filters (unsigned int sz)

Public Member Functions inherited from IMP::ParticleInputs
ModelObjectsTemp	get_inputs (Model *m, const ParticleIndexes &pis) const
	Get the ModelObjects read when the given list of particles is used. More...

Public Member Functions inherited from IMP::Object
virtual void	clear_caches ()

CheckLevel	get_check_level () const

LogLevel	get_log_level () const

void	set_check_level (CheckLevel l)

void	set_log_level (LogLevel l)
	Set the logging level used in this object. More...

void	set_was_used (bool tf) const

void	show (std::ostream &out=std::cout) const

const std::string &	get_name () const

void	set_name (std::string name)

Additional Inherited Members
Protected Member Functions inherited from IMP::Object
	Object (std::string name)
	Construct an object with the given name. More...

virtual void	do_destroy ()

Member Function Documentation

virtual ModelObjectsTemp IMP::core::NearestNeighborsClosePairsFinder::do_get_inputs	(	Model *	m,
		const ParticleIndexes &	pis
	)		const

virtual

Overload this method to specify the inputs.

Implements IMP::ParticleInputs.

virtual ParticleIndexPairs IMP::core::NearestNeighborsClosePairsFinder::get_close_pairs	(	Model *	m,
		const ParticleIndexes &	pc
	)		const

virtual

return all close pairs among pc in model m

Implements IMP::core::ClosePairsFinder.

virtual ParticleIndexPairs IMP::core::NearestNeighborsClosePairsFinder::get_close_pairs	(	Model *	m,
		const ParticleIndexes &	pca,
		const ParticleIndexes &	pcb
	)		const

virtual

return all close pairs among pc in model m

Implements IMP::core::ClosePairsFinder.

virtual ::IMP::VersionInfo IMP::core::NearestNeighborsClosePairsFinder::get_version_info ( ) const

virtual

Get information about the module and version of the object.

Reimplemented from IMP::Object.

Definition at line 37 of file NearestNeighborsClosePairsFinder.h.

The documentation for this class was generated from the following file:

NearestNeighborsClosePairsFinder.h

Detailed Description

Public Member Functions

Additional Inherited Members

Member Function Documentation