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IMP Reference Guide
2.14.0
The Integrative Modeling Platform
IMP Manual
Reference Guide
Tutorial Index
Modules
Classes
Examples
include
IMP
npctransport
version 2.14.0
SitesGeometry.h
Go to the documentation of this file.
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/**
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* \file SitesGeometry.h
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* \brief Geometry of sites on particle surfaces
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*
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* Copyright 2007-2020 IMP Inventors. All rights reserved.
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*/
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#ifndef IMPNPCTRANSPORT_SITES_GEOMETRY_H
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#define IMPNPCTRANSPORT_SITES_GEOMETRY_H
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#include "npctransport_config.h"
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#include <
IMP/Pointer.h
>
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#include <
IMP/core/XYZR.h
>
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#include <
IMP/core/Typed.h
>
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#include <
IMP/display/particle_geometry.h
>
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#include <
IMP/generic.h
>
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#include <
IMP/algebra/vector_search.h
>
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#include <
IMP/algebra/Sphere3D.h
>
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#include <
IMP/atom/estimates.h
>
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#include <boost/unordered_set.hpp>
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#include "internal/sites.h"
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#include <boost/array.hpp>
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IMPNPCTRANSPORT_BEGIN_NAMESPACE
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/** Show the sites. */
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class
IMPNPCTRANSPORTEXPORT
SitesGeometry
:
public
core::XYZRGeometry
{
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algebra::Sphere3Ds
sites_;
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public
:
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SitesGeometry
(
Particle
*p,
algebra::Sphere3Ds
sites)
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:
core::XYZRGeometry
(p), sites_(sites) {}
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virtual
IMP::display::Geometries
get_components
()
const
IMP_OVERRIDE
;
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IMP_OBJECT_METHODS
(
SitesGeometry
);
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};
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/** Show the sites. */
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class
IMPNPCTRANSPORTEXPORT
TypedSitesGeometry
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:
public
display::SingletonsGeometry
{
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boost::unordered_map<core::ParticleType, algebra::Sphere3Ds> sites_;
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public
:
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TypedSitesGeometry
(
SingletonContainerAdaptor
sc)
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:
display::SingletonsGeometry
(sc) {}
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void
set_sites(
core::ParticleType
t,
algebra::Sphere3Ds
s) {
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// std::cout << t << " gets " << s.size() << std::endl;
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sites_[t] = s;
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}
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virtual
IMP::display::Geometries
get_components
()
const
IMP_OVERRIDE
;
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IMP_OBJECT_METHODS
(
TypedSitesGeometry
);
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};
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IMPNPCTRANSPORT_END_NAMESPACE
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#endif
/* IMPNPCTRANSPORT_SITES_GEOMETRY_H */
IMP_OBJECT_METHODS
#define IMP_OBJECT_METHODS(Name)
Define the basic things needed by any Object.
Definition:
object_macros.h:25
IMP::display::SingletonsGeometry
A base class for geometry from a set of particles.
Definition:
particle_geometry.h:50
IMP::Vector< Sphere3D >
Typed.h
A particle with a user-defined type.
particle_geometry.h
Represent an XYZR particle with a sphere.
IMP::npctransport::TypedSitesGeometry
Definition:
SitesGeometry.h:40
IMP::Key< 34897493 >
IMP::SingletonContainerAdaptor
Definition:
SingletonContainer.h:151
Pointer.h
A nullptr-initialized pointer to an IMP Object.
IMP::display::Geometry::get_components
virtual Geometries get_components() const
Return a set of geometry composing this one.
Definition:
declare_Geometry.h:48
IMP::Particle
Class to handle individual particles of a Model object.
Definition:
Particle.h:41
vector_search.h
Functions to search over vectors.
IMP::npctransport::SitesGeometry
Definition:
SitesGeometry.h:29
Sphere3D.h
Simple 3D sphere class.
XYZR.h
Decorator for a sphere-like particle.
IMP_OVERRIDE
#define IMP_OVERRIDE
Cause a compile error if this method does not override a parent method.
Definition:
compiler_macros.h:78
estimates.h
Estimates of various physical quantities.
IMP::core::XYZRGeometry
Display an IMP::core::XYZR particle as a ball.
Definition:
XYZR.h:151
generic.h
Various important functionality for implementing decorators.