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IMP Reference Guide
2.14.0
The Integrative Modeling Platform
IMP Manual
Reference Guide
Tutorial Index
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include
IMP
core
version 2.14.0
QuadraticClosePairsFinder.h
Go to the documentation of this file.
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/**
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* \file IMP/core/QuadraticClosePairsFinder.h
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* \brief Test all pairs of particles to find close pairs.
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*
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* Copyright 2007-2020 IMP Inventors. All rights reserved.
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*/
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#ifndef IMPCORE_QUADRATIC_CLOSE_PAIRS_FINDER_H
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#define IMPCORE_QUADRATIC_CLOSE_PAIRS_FINDER_H
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#include "
ClosePairsFinder.h
"
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#include <IMP/core/core_config.h>
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IMPCORE_BEGIN_NAMESPACE
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//! Find all nearby pairs by testing all pairs
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/** \see ClosePairsScoreState
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*/
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class
IMPCOREEXPORT
QuadraticClosePairsFinder
:
public
ClosePairsFinder
{
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public
:
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QuadraticClosePairsFinder
();
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//! returns true if a and b are close, and pass any filter added
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//! to this
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bool
get_are_close_and_filtered
(
Particle
*a,
Particle
*b)
const
{
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return
get_are_close_and_filtered
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(a->get_model(),
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a->
get_index
(),
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b->
get_index
());
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}
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//! returns true if a and b of m are close, and pass any filter added
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//! to this
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bool
get_are_close_and_filtered(
Model
*m,
ParticleIndex
a,
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ParticleIndex
b)
const
;
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virtual
IntPairs
get_close_pairs
(
const
algebra::BoundingBox3Ds
&bbs)
const
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IMP_OVERRIDE
;
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virtual
IntPairs
get_close_pairs
(
const
algebra::BoundingBox3Ds
&bas,
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const
algebra::BoundingBox3Ds
&bbs)
const
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IMP_OVERRIDE
;
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virtual
ParticleIndexPairs
get_close_pairs
(
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Model
*m,
const
ParticleIndexes
&pc)
const
IMP_OVERRIDE
;
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virtual
ParticleIndexPairs
get_close_pairs
(
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Model
*m,
const
ParticleIndexes
&pca,
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const
ParticleIndexes
&pcb)
const
IMP_OVERRIDE
;
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virtual
ModelObjectsTemp
do_get_inputs
(
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Model
*m,
const
ParticleIndexes
&pis)
const
IMP_OVERRIDE
;
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IMP_OBJECT_METHODS
(
QuadraticClosePairsFinder
);
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};
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IMPCORE_END_NAMESPACE
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#endif
/* IMPCORE_QUADRATIC_CLOSE_PAIRS_FINDER_H */
IMP::core::ClosePairsFinder
A base class for algorithms to find spatial proximities.
Definition:
ClosePairsFinder.h:35
IMP_OBJECT_METHODS
#define IMP_OBJECT_METHODS(Name)
Define the basic things needed by any Object.
Definition:
object_macros.h:25
IMP::Index< ParticleIndexTag >
IMP::core::QuadraticClosePairsFinder::get_are_close_and_filtered
bool get_are_close_and_filtered(Particle *a, Particle *b) const
Definition:
QuadraticClosePairsFinder.h:24
IMP::Vector< IntPair >
IMP::core::ClosePairsFinder::get_close_pairs
virtual ParticleIndexPairs get_close_pairs(Model *m, const ParticleIndexes &pc) const =0
return all close pairs among pc in model m
IMP::Model
Class for storing model, its restraints, constraints, and particles.
Definition:
Model.h:72
IMP::ParticleInputs::do_get_inputs
virtual ModelObjectsTemp do_get_inputs(Model *m, const ParticleIndexes &pis) const =0
Overload this method to specify the inputs.
IMP::Particle
Class to handle individual particles of a Model object.
Definition:
Particle.h:41
ClosePairsFinder.h
A base class for algorithms to detect proximities.
IMP::Particle::get_index
ParticleIndex get_index() const
returns the particle index of this particle in its model
IMP::core::QuadraticClosePairsFinder
Find all nearby pairs by testing all pairs.
Definition:
QuadraticClosePairsFinder.h:19
IMP_OVERRIDE
#define IMP_OVERRIDE
Cause a compile error if this method does not override a parent method.
Definition:
compiler_macros.h:78