primitive_geometries.h

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/**
 *  \file IMP/display/primitive_geometries.h
 *  \brief Implement geometry for the basic shapes from IMP.algebra.
 *
 *  Copyright 2007-2020 IMP Inventors. All rights reserved.
 */

#ifndef IMPDISPLAY_PRIMITIVE_GEOMETRIES_H
#define IMPDISPLAY_PRIMITIVE_GEOMETRIES_H

#include <IMP/display/display_config.h>
#include "declare_Geometry.h"
#include "geometry_macros.h"
#include <IMP/algebra/Vector3D.h>
#include <IMP/algebra/Sphere3D.h>
#include <IMP/algebra/Segment3D.h>
#include <IMP/algebra/Cylinder3D.h>
#include <IMP/algebra/Ellipsoid3D.h>
#include <IMP/algebra/BoundingBoxD.h>
#include <IMP/algebra/Plane3D.h>
#include <IMP/algebra/ReferenceFrame3D.h>
#include <IMP/algebra/Triangle3D.h>
#include <IMP/algebra/standard_grids.h>
#ifdef IMP_DISPLAY_USE_IMP_CGAL
#include <IMP/cgal/internal/polyhedrons.h>
#endif

IMPDISPLAY_BEGIN_NAMESPACE

/** \brief Display a sphere.
*/
IMP_DISPLAY_GEOMETRY_DECL(SphereGeometry, SphereGeometries, algebra::Sphere3D);
/** \brief Display a cylinder.
*/
IMP_DISPLAY_GEOMETRY_DECL(CylinderGeometry, CylinderGeometries,
                          algebra::Cylinder3D);
/** \brief Display a ellipsoid.
*/
IMP_DISPLAY_GEOMETRY_DECL(EllipsoidGeometry, EllipsoidGeometries,
                          algebra::Ellipsoid3D);
/** \brief Display a point.
*/
IMP_DISPLAY_GEOMETRY_DECL(PointGeometry, PointGeometries, algebra::Vector3D);
/** \brief Display a segment.
*/
IMP_DISPLAY_GEOMETRY_DECL(SegmentGeometry, SegmentGeometries,
                          algebra::Segment3D);
/** If CGAL is available, then any simple, planar polygon can be
    used. Otherwise, the polygons should be simple, planar and convex.
*/
IMP_DISPLAY_GEOMETRY_DECL(PolygonGeometry, PolygonGeometries,
                          algebra::Vector3Ds);
/** \brief Display a triangle.
*/
IMP_DISPLAY_GEOMETRY_DECL(TriangleGeometry, TriangleGeometries,
                          algebra::Triangle3D);
/** \brief Display a bounding box.
*/
IMP_DISPLAY_GEOMETRY_DECOMPOSABLE_DECL(
    BoundingBoxGeometry, BoundingBoxGeometries, algebra::BoundingBoxD<3>);

/** \brief Display a reference frame.
*/
IMP_DISPLAY_GEOMETRY_DECOMPOSABLE_DECL(ReferenceFrameGeometry,
                                       ReferenceFrameGeometries,
                                       algebra::ReferenceFrame3D);

//! A text label for a ball in space
/** You can use the offset if the thing being labeled has a radius.
 */
class IMPDISPLAYEXPORT LabelGeometry : public Geometry {
  algebra::Sphere3D loc_;
  std::string text_;

 public:
  LabelGeometry(const algebra::Sphere3D &loc, std::string text);
  LabelGeometry(const algebra::Vector3D &loc, std::string text);
  std::string get_text() const { return text_; }
  const algebra::Sphere3D &get_location() const { return loc_; }
  virtual IMP::display::Geometries get_components() const IMP_OVERRIDE;
  IMP_OBJECT_METHODS(LabelGeometry);
};

//! Display a surface mesh
/** Faces are delimited by -1s in the list of indices.
*/
class IMPDISPLAYEXPORT SurfaceMeshGeometry : public Geometry {
  const algebra::Vector3Ds vertices_;
  const Ints faces_;

 protected:
  SurfaceMeshGeometry(const std::pair<algebra::Vector3Ds, Ints> &m,
                      std::string name = "SurfaceMesh %1%");

 public:
  SurfaceMeshGeometry(const algebra::Vector3Ds &vertices, const Ints &faces);
  const algebra::Vector3Ds &get_vertexes() const { return vertices_; }
  const Ints &get_faces() const { return faces_; }
  virtual IMP::display::Geometries get_components() const IMP_OVERRIDE;
  IMP_OBJECT_METHODS(SurfaceMeshGeometry);
};

#ifdef IMP_DISPLAY_USE_IMP_CGAL
//! Display a plane as truncated to a bounding box
/** This requires CGAL.
 */
class IMPDISPLAYEXPORT PlaneGeometry : public Geometry {
  algebra::Plane3D plane_;
  algebra::BoundingBox3D bb_;

 public:
  PlaneGeometry(const algebra::Plane3D &loc, const algebra::BoundingBox3D &box);
  virtual IMP::display::Geometries get_components() const IMP_OVERRIDE;
  IMP_OBJECT_METHODS(PlaneGeometry);
};

//! Display an isosurface of a density map
/** This requires CGAL.
 */
class IsosurfaceGeometry : public SurfaceMeshGeometry {
 public:
  template <int D, class Storage, class Value>
  IsosurfaceGeometry(const algebra::GridD<D, Storage, Value> &grid, double iso)
      : SurfaceMeshGeometry(cgal::internal::get_iso_surface(grid, iso),
                            "IsosurfaceGeometry %1%") {}
#ifdef SWIG
  IsosurfaceGeometry(
      const algebra::GridD<3, algebra::DenseGridStorageD<3, double>, double> &
          grid,
      double iso);
  IsosurfaceGeometry(const algebra::GridD<
                         3, algebra::DenseGridStorageD<3, float>, float> &grid,
                     double iso);
#endif
};

//! Display an isosurface of a density map
/** This requires CGAL.
 */
class IMPDISPLAYEXPORT SkinSurfaceGeometry : public SurfaceMeshGeometry {
 public:
  SkinSurfaceGeometry(const algebra::Sphere3Ds &balls);
};

#endif

IMPDISPLAY_END_NAMESPACE

#endif /* IMPDISPLAY_PRIMITIVE_GEOMETRIES_H */