IMP.pmi.restraints.proteomics Namespace Reference

Restraints for handling various kinds of proteomics data. More...

Detailed Description

Restraints for handling various kinds of proteomics data.

Classes
class	AmbiguousCompositeRestraint
	this restraint allows ambiguous cross-linking between multiple copies excluding between symmetric copies It allows name ambiguity More...
class	CompositeRestraint
	handleparticles a list of particles compositeparticles is a list of list of particles More...
class	ConnectivityNetworkRestraint
	a python restraint that computes the score for a composite of proteins Authors: G. More...
class	ConnectivityRestraint
	generate a connectivity restraint between domains setting up the restraint example: sel1 = IMP.atom.Selection(root_hier, molecule="Rpb3", residue_indexes=range(1,100)) sel2 = IMP.atom.Selection(root_hier, molecule="Rpb4", residue_indexes=range(1,100)) cr=restraints.ConnectivityRestraint((sel1, sel2), label='CR1') cr.add_to_model() Multistate support =No Resolution=Yes More...
class	FuzzyBoolean
	Fully Ambiguous Restraint that can be built using boolean logic R. More...
class	FuzzyRestraint
	Fully Ambiguous Restraint that can be built using boolean logic R. More...
class	SetupConnectivityNetworkRestraint
	generates and wraps a IMP.pmi.ConnectivityRestraint between domains example: cr=restraints.ConnectivityNetworkRestraint(simo,["CCC",(1,100,"TTT"),(100,150,"AAA")]) cr.add_to_model() cr.set_label("CR1") More...