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IMP Reference Guide
2.13.0
The Integrative Modeling Platform
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Basic SAXS restraint using ISD. More...
Inheritance diagram for IMP.pmi1.restraints.saxs.SAXSISDRestraint:Basic SAXS restraint using ISD.
Definition at line 93 of file /restraints/saxs.py.
Public Member Functions | |
| def | draw_gamma |
| Draw gamma from lognormal distribution. More... | |
| def | draw_sigma |
| Draw 1/sigma2 from gamma distribution. More... | |
| def | get_gamma_value |
| Get value of gamma. More... | |
| def | optimize_gamma |
| Set gamma to the value that maximizes its conditional likelihood. More... | |
| def | optimize_sigma |
| Set sigma to the value that maximizes its conditional likelihood. More... | |
| Public Member Functions inherited from IMP.pmi1.restraints.RestraintBase | |
| def | __init__ |
| Constructor. More... | |
| def | add_to_model |
| Add the restraint to the model. More... | |
| def | evaluate |
| Evaluate the score of the restraint. More... | |
| def | get_output |
| Get outputs to write to stat files. More... | |
| def | get_particles_to_sample |
| Get any created particles which should be sampled. More... | |
| def | get_restraint |
| Get the primary restraint set. More... | |
| def | get_restraint_for_rmf |
| Get the restraint for visualization in an RMF file. More... | |
| def | get_restraint_set |
| Get the primary restraint set. More... | |
| def | set_label |
| Set the unique label used in outputs and particle/restraint names. More... | |
| def | set_weight |
| Set the weight to apply to all internal restraints. More... | |
| def IMP.pmi1.restraints.saxs.SAXSISDRestraint.draw_gamma | ( | self | ) |
Draw gamma from lognormal distribution.
Definition at line 218 of file /restraints/saxs.py.
| def IMP.pmi1.restraints.saxs.SAXSISDRestraint.draw_sigma | ( | self | ) |
Draw 1/sigma2 from gamma distribution.
Definition at line 213 of file /restraints/saxs.py.
| def IMP.pmi1.restraints.saxs.SAXSISDRestraint.get_gamma_value | ( | self | ) |
Get value of gamma.
Definition at line 206 of file /restraints/saxs.py.
| def IMP.pmi1.restraints.saxs.SAXSISDRestraint.optimize_gamma | ( | self | ) |
Set gamma to the value that maximizes its conditional likelihood.
Definition at line 174 of file /restraints/saxs.py.
| def IMP.pmi1.restraints.saxs.SAXSISDRestraint.optimize_sigma | ( | self | ) |
Set sigma to the value that maximizes its conditional likelihood.
Definition at line 167 of file /restraints/saxs.py.