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IMP Reference Guide  2.13.0
The Integrative Modeling Platform
IMP::npctransport::SlabWithCylindricalPore Class Reference

#include <IMP/npctransport/SlabWithCylindricalPore.h>

+ Inheritance diagram for IMP::npctransport::SlabWithCylindricalPore:

Detailed Description

A decorator for a particle that represents a slab containing a cylindrical pore

Definition at line 24 of file SlabWithCylindricalPore.h.

Public Member Functions

 SlabWithCylindricalPore (::IMP::Model *m,::IMP::ParticleIndex id)
 
 SlabWithCylindricalPore (const IMP::ParticleAdaptor &d)
 
void show (std::ostream &out=std::cout) const
 
- Public Member Functions inherited from IMP::npctransport::SlabWithPore
 SlabWithPore (::IMP::Model *m,::IMP::ParticleIndex id)
 
 SlabWithPore (const IMP::ParticleAdaptor &d)
 
void add_to_pore_radius_derivative (double v, DerivativeAccumulator &d)
 
Float get_pore_radius () const
 get cylindrical pore radius More...
 
bool get_pore_radius_is_optimized () const
 
Float get_thickness () const
 returns whether the particle last entered the transport moiety from its More...
 
void set_pore_radius (double r) const
 set cylindrical pore radius More...
 
void set_pore_radius_is_optimized (bool tf) const
 Set whether the coordinates are optimized. More...
 
void set_thickness (double thickness)
 sets slab thickness More...
 
void show (std::ostream &out=std::cout) const
 
- Public Member Functions inherited from IMP::Decorator
bool get_is_valid () const
 Returns true if constructed with a non-default constructor. More...
 
Modelget_model () const
 Returns the Model containing the particle. More...
 
Particleget_particle () const
 Returns the particle decorated by this decorator. More...
 
ParticleIndex get_particle_index () const
 Returns the particle index decorated by this decorator. More...
 
 operator Particle * () const
 
 operator ParticleIndex () const
 
Particleoperator-> () const
 

Static Public Member Functions

static IntKey get_cylindrical_pore_key ()
 Get the decorator key indicating a cylindrical pore. More...
 
static bool get_is_setup (const IMP::ParticleAdaptor &p)
 
static bool get_is_setup (Model *m, ParticleIndex pi)
 Return true if the particle is an instance of SlabWithCylindricalPore. More...
 
static SlabWithCylindricalPore setup_particle (IMP::ParticleAdaptor decorator, double thickness, double radius)
 
static SlabWithCylindricalPore setup_particle (Model *m, ParticleIndex pi, double thickness, double radius)
 
- Static Public Member Functions inherited from IMP::npctransport::SlabWithPore
static bool get_is_setup (const IMP::ParticleAdaptor &p)
 
static bool get_is_setup (Model *m, ParticleIndex pi)
 Return true if the particle is an instance of SlabWithPore. More...
 
static FloatKey get_pore_radius_key ()
 Get the key for the pore radius. More...
 
static FloatKey get_thickness_key ()
 Get the decorator key for is_last_entry_from_top. More...
 
static SlabWithPore setup_particle (IMP::ParticleAdaptor decorator, double thickness, double pore_radius)
 
static SlabWithPore setup_particle (Model *m, ParticleIndex pi, double thickness, double pore_radius)
 

Additional Inherited Members

- Protected Member Functions inherited from IMP::Decorator
 Decorator (Model *m, ParticleIndex pi)
 
 Decorator (ParticleAdaptor p)
 

Member Function Documentation

static IntKey IMP::npctransport::SlabWithCylindricalPore::get_cylindrical_pore_key ( )
static

Get the decorator key indicating a cylindrical pore.

static bool IMP::npctransport::SlabWithCylindricalPore::get_is_setup ( Model m,
ParticleIndex  pi 
)
static

Return true if the particle is an instance of SlabWithCylindricalPore.

Definition at line 70 of file SlabWithCylindricalPore.h.

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static SlabWithCylindricalPore IMP::npctransport::SlabWithCylindricalPore::setup_particle ( Model m,
ParticleIndex  pi,
double  thickness,
double  radius 
)
static

Decorate a particle that represents a slab (e.g. nuclear envelope) with specified thickness and a cylindrical pore of specified radius.

The slab is parallel to the x,y plain from z=-0.5*thickness to z=0.5*thickness, and the central axis of the pore lies on the origin.

Parameters
mthe model
pithe particle index
thicknessslab thickness
radiuspore radiusSetup the particle so it can be used with this decorator.

Definition at line 67 of file SlabWithCylindricalPore.h.


The documentation for this class was generated from the following file: