#include <IMP/npctransport/ParticleTransportStatisticsOptimizerState.h>

Inheritance diagram for IMP::npctransport::ParticleTransportStatisticsOptimizerState:

Detailed Description

Maintains transport statistics about a particle p in a z-axis aligned channel,

Definition at line 28 of file ParticleTransportStatisticsOptimizerState.h.

Public Member Functions
	ParticleTransportStatisticsOptimizerState (Particle *p, Float bottom_z, Float top_z, WeakPointer< IMP::npctransport::Statistics > statistics_manager=nullptr, WeakPointer< IMP::atom::Simulator > owner=nullptr)

virtual void	do_update (unsigned int call_num)

unsigned int	get_n_transports_down () const

unsigned int	get_n_transports_up () const

WeakPointer< IMP::atom::Simulator >	get_owner () const
	returns the simulator that was declared in the constructor or by More...

unsigned int	get_total_n_transports () const

Floats const &	get_transport_time_points_in_ns () const

virtual std::string	get_type_name () const

virtual ::IMP::VersionInfo	get_version_info () const
	Get information about the module and version of the object. More...

void	reset ()

void	set_owner (WeakPointer< IMP::atom::Simulator > owner)

Public Member Functions inherited from IMP::OptimizerState
	OptimizerState (Model *m, std::string name)
	Constructor. More...

unsigned int	get_number_of_updates () const
	Return the number of times do_update() has been called. More...

Optimizer *	get_optimizer () const

unsigned int	get_period () const
	Get the periodicity of this state. More...

virtual void	set_is_optimizing (bool)
	Called by an Optimizer to signal begin/end of an optimize run. More...

void	set_number_of_updates (unsigned int n)
	Set the counter of number of times do_update() has been called. More...

void	set_period (unsigned int p)
	Set the periodicity of this state. More...

virtual void	update ()
	Called when the Optimizer accepts a new conformation. More...

void	update_always ()
	Force the state to perform its action now, ignoring the periodicity. More...

Public Member Functions inherited from IMP::ModelObject
	ModelObject (Model *m, std::string name)

bool	get_has_dependencies () const
	Return whether this object has dependencies computed. More...

bool	get_has_required_score_states () const
	Return whether score states are computed. More...

ModelObjectsTemp	get_inputs () const

ModelObjectsTemps	get_interactions () const
	Get the interacting sets induced by this ModelObject. More...

Model *	get_model () const

ModelObjectsTemp	get_outputs () const

const ScoreStatesTemp &	get_required_score_states () const
	Get the score states that are ancestors of this in the dependency graph. More...

void	set_has_dependencies (bool tf)
	Either invalidate the dependencies or ensure they are correct. More...

void	set_has_required_score_states (bool tf)
	Compute the required score states. More...

Public Member Functions inherited from IMP::Object
virtual void	clear_caches ()

CheckLevel	get_check_level () const

LogLevel	get_log_level () const

void	set_check_level (CheckLevel l)

void	set_log_level (LogLevel l)
	Set the logging level used in this object. More...

void	set_was_used (bool tf) const

void	show (std::ostream &out=std::cout) const

const std::string &	get_name () const

void	set_name (std::string name)

Additional Inherited Members
Protected Member Functions inherited from IMP::OptimizerState
virtual ModelObjectsTemp	do_get_inputs () const

virtual ModelObjectsTemp	do_get_outputs () const

virtual void	do_set_is_optimizing (bool)

Protected Member Functions inherited from IMP::ModelObject
virtual ModelObjectsTemps	do_get_interactions () const

virtual void	handle_set_has_required_score_states (bool)

Protected Member Functions inherited from IMP::Object
	Object (std::string name)
	Construct an object with the given name. More...

virtual void	do_destroy ()

Constructor & Destructor Documentation

IMP::npctransport::ParticleTransportStatisticsOptimizerState::ParticleTransportStatisticsOptimizerState	(	Particle *	p,
		Float	bottom_z,
		Float	top_z,
		WeakPointer< IMP::npctransport::Statistics >	statistics_manager = `nullptr`,
		WeakPointer< IMP::atom::Simulator >	owner = `nullptr`
	)

Initiates transport statistics about a particle p in a z-axis aligned channel, whose bottom and top are at z-coordinates bottom_z and top_z, respectively.

Parameters

p	the particle, assumed to be decorated as a RigidBody
bottom_z	the z coordinate of the channel bottom
top_z	the z coordinate of the channel top
statistics_manager	Statistics object that can be used to communicate back pertinent information from this object, or nullptr if not managed
owner	a simulator that is moving this particle and can provide it with time information, or nullptr

Member Function Documentation

virtual void IMP::npctransport::ParticleTransportStatisticsOptimizerState::do_update ( unsigned int )

virtual

This method is called every get_period() update calls. The number of times this method has been called since the last reset or start of the optimization run is passed.

Reimplemented from IMP::OptimizerState.

unsigned int IMP::npctransport::ParticleTransportStatisticsOptimizerState::get_n_transports_down ( ) const

Returns the number of times the particle crossed the channel from its top to its bottom

Definition at line 86 of file ParticleTransportStatisticsOptimizerState.h.

unsigned int IMP::npctransport::ParticleTransportStatisticsOptimizerState::get_n_transports_up ( ) const

Returns the number of times the particle crossed the channel from its bottom to its top

Definition at line 81 of file ParticleTransportStatisticsOptimizerState.h.

WeakPointer<IMP::atom::Simulator> IMP::npctransport::ParticleTransportStatisticsOptimizerState::get_owner ( ) const

returns the simulator that was declared in the constructor or by

to moves this particle, and provide simulation time information about it.

Definition at line 75 of file ParticleTransportStatisticsOptimizerState.h.

unsigned int IMP::npctransport::ParticleTransportStatisticsOptimizerState::get_total_n_transports ( ) const

Returns the number of times the particle crossed the channel from any one side to the other

Definition at line 91 of file ParticleTransportStatisticsOptimizerState.h.

Floats const& IMP::npctransport::ParticleTransportStatisticsOptimizerState::get_transport_time_points_in_ns ( ) const

returns a list of all the simulation time points in nanoseconds when a transport even has occurred (according to the owner of this OptimizerState). An empty list is returned if no transport events are known or if there was no owner when they occurred

Definition at line 101 of file ParticleTransportStatisticsOptimizerState.h.

virtual ::IMP::VersionInfo IMP::npctransport::ParticleTransportStatisticsOptimizerState::get_version_info ( ) const

virtual

Get information about the module and version of the object.

Reimplemented from IMP::Object.

Definition at line 109 of file ParticleTransportStatisticsOptimizerState.h.

void IMP::npctransport::ParticleTransportStatisticsOptimizerState::reset ( )

virtual

resets the number of transports statistics to 0

Reimplemented from IMP::OptimizerState.

void IMP::npctransport::ParticleTransportStatisticsOptimizerState::set_owner ( WeakPointer< IMP::atom::Simulator > owner )

sets a simulator that moves this particle and can provide simulation time information about it, or IMP::nullptr if none