Set the coordinates of a particle to be a transformed version of a reference. More...

#include <IMP/core/symmetry.h>

Inheritance diagram for IMP::core::TransformationSymmetry:

Detailed Description

Set the coordinates of a particle to be a transformed version of a reference.

The passed particles must be Reference particles and XYZ particles and can be RigidBody particles iff the reference particle is a rigid body.

See Also: TransformationAndReflectionSymmetry

Definition at line 76 of file core/symmetry.h.

Public Member Functions
	TransformationSymmetry (const algebra::Transformation3D &t)
	Create with both rotation and translation. More...

	TransformationSymmetry (ParticleIndex rb_pi)
	Create based on a rigid body transformation. More...

virtual void	apply_index (Model *m, ParticleIndex p) const

virtual void	apply_indexes (Model *m, const ParticleIndexes &o, unsigned int lower_bound, unsigned int upper_bound) const

virtual ModelObjectsTemp	do_get_inputs (Model *m, const ParticleIndexes &pis) const
	Overload this method to specify the inputs. More...

virtual ModelObjectsTemp	do_get_outputs (Model *m, const ParticleIndexes &pis) const
	Overload this method to specify the outputs. More...

algebra::Transformation3D	get_transformation () const

virtual std::string	get_type_name () const

virtual ::IMP::VersionInfo	get_version_info () const
	Get information about the module and version of the object. More...

void	set_transformation (algebra::Transformation3D t)
	Set a new transformation to use. More...

Public Member Functions inherited from IMP::SingletonModifier
	SingletonModifier (std::string name="SingletonModifier %1%")

Public Member Functions inherited from IMP::ParticleInputs
ModelObjectsTemp	get_inputs (Model *m, const ParticleIndexes &pis) const
	Get the ModelObjects read when the given list of particles is used. More...

Public Member Functions inherited from IMP::ParticleOutputs
ModelObjectsTemp	get_outputs (Model *m, const ParticleIndexes &pis) const
	Get the ModelObjects changed when the given list of particles is used. More...

Public Member Functions inherited from IMP::Object
virtual void	clear_caches ()

CheckLevel	get_check_level () const

LogLevel	get_log_level () const

void	set_check_level (CheckLevel l)

void	set_log_level (LogLevel l)
	Set the logging level used in this object. More...

void	set_was_used (bool tf) const

void	show (std::ostream &out=std::cout) const

const std::string &	get_name () const

void	set_name (std::string name)

Additional Inherited Members
Public Types inherited from IMP::SingletonModifier
typedef Particle *	Argument

typedef ParticleIndex	IndexArgument

Protected Member Functions inherited from IMP::Object
	Object (std::string name)
	Construct an object with the given name. More...

virtual void	do_destroy ()

Constructor & Destructor Documentation

IMP::core::TransformationSymmetry::TransformationSymmetry ( const algebra::Transformation3D & t )

Create with both rotation and translation.

IMP::core::TransformationSymmetry::TransformationSymmetry ( ParticleIndex rb_pi )

Create based on a rigid body transformation.

Note: If the rigid body reference frame changes, the transformation used by this Modifier will also change.

Member Function Documentation

virtual void IMP::core::TransformationSymmetry::apply_index	(	Model *	m,
		ParticleIndex	v
	)		const

virtual

Apply the function to a single value

Implements IMP::SingletonModifier.

virtual void IMP::core::TransformationSymmetry::apply_indexes	(	Model *	m,
		const ParticleIndexes &	o,
		unsigned int	lower_bound,
		unsigned int	upper_bound
	)		const

virtual

Apply the function to a collection of ParticlesTemp If bounds are passed, only apply to ones between the upper and lower bounds.

Reimplemented from IMP::SingletonModifier.

Definition at line 111 of file core/symmetry.h.

virtual ModelObjectsTemp IMP::core::TransformationSymmetry::do_get_inputs	(	Model *	m,
		const ParticleIndexes &	pis
	)		const

virtual

Overload this method to specify the inputs.

Implements IMP::ParticleInputs.

virtual ModelObjectsTemp IMP::core::TransformationSymmetry::do_get_outputs	(	Model *	m,
		const ParticleIndexes &	pis
	)		const

virtual

Overload this method to specify the outputs.

Implements IMP::ParticleOutputs.

virtual ::IMP::VersionInfo IMP::core::TransformationSymmetry::get_version_info ( ) const

virtual

Get information about the module and version of the object.

Reimplemented from IMP::Object.

Definition at line 112 of file core/symmetry.h.

void IMP::core::TransformationSymmetry::set_transformation ( algebra::Transformation3D t )

Set a new transformation to use.

Note: the transformation will not be applied until Model.update() is called or the model score is evaluated

Definition at line 99 of file core/symmetry.h.

The documentation for this class was generated from the following file:

core/symmetry.h

Detailed Description

Public Member Functions

Additional Inherited Members

Constructor & Destructor Documentation

Member Function Documentation