IMP.pmi.mmcif Namespace Reference

Support for the mmCIF file format. More...

Detailed Description

Support for the mmCIF file format.

IMP has basic support for writing out files in mmCIF format, for deposition in PDB-Dev. mmCIF files are currently generated by creating an IMP.pmi.mmcif.ProtocolOutput class, and attaching it to an IMP.pmi.representation.Representation object, after which any generated models and metadata are collected and output as mmCIF.

Classes
class	AsymUnit
	A single asymmetric unit in the system. More...
class	Entity
	A single entity in the system. More...
class	GMMParser
	Extract metadata from an EM density GMM file. More...
class	ProtocolOutput
	Class to encode a modeling protocol as mmCIF. More...

Functions
def	read
	Read data from the mmCIF file handle fh. More...

Function Documentation

def IMP.pmi.mmcif.read	(		fh,
			model_class = ihm.model.Model,
			format = 'mmCIF',
			handlers = []
	)

Read data from the mmCIF file handle fh.

This is a simple wrapper around ihm.reader.read(), which also reads PMI-specific information from the mmCIF or BinaryCIF file.

Note

This function is only available in Python.

Definition at line 1602 of file mmcif.py.