IMP Reference Guide
2.12.0
The Integrative Modeling Platform
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Functionality for handling multi-state models. More...
Functionality for handling multi-state models.
These are used in IMP to model systems that are found simultaneously in multiple states. For example, a hinge protein may be found in both 'open' and 'closed' forms, and so some experiments conducted on a sample of the protein will return data from both forms. Building a single model that tries to be consistent with all the data will therefore fail - two models need to be constructed.
Command line tool to enumerate multi-state models with SAXS profiles. See also IMP::foxs for the similar FoXS command line tool.
Author(s): Dina Schneidman
Maintainer: duhovka
License: LGPL This library is free software; you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version.
Publications:
Classes | |
class | CompareMultiStateModels |
Utility class to help sort MultiStateModel objects. More... | |
class | EnsembleGenerator |
Enumeration of an ensemble of good scoring MultiStateModels. More... | |
class | MultiStateModel |
Keep track of multiple states. More... | |
class | MultiStateModelScore |
Base class for MultiStateModel scoring classes. More... | |
class | SAXSMultiStateModelScore |
Typedefs | |
typedef Vector< MultiStateModel > | Ensemble |
Functions | |
double | get_average (const std::vector< double > &v) |
std::pair< double, double > | get_average_and_stdev (const std::vector< double > &v) |
Standard module functions | |
All | |
std::string | get_module_version () |
std::string | get_module_name () |
std::string | get_data_path (std::string file_name) |
Return the full path to one of this module's data files. More... | |
std::string | get_example_path (std::string file_name) |
Return the full path to one of this module's example files. More... | |
std::string IMP::multi_state::get_data_path | ( | std::string | file_name | ) |
Return the full path to one of this module's data files.
To read the data file "data_library" that was placed in the data
directory of this module, do something like
This will ensure that the code works both when IMP is installed or if used via the setup_environment.sh
script.
std::string IMP::multi_state::get_example_path | ( | std::string | file_name | ) |
Return the full path to one of this module's example files.
To read the example file "example_protein.pdb" that was placed in the examples
directory of this module, do something like
This will ensure that the code works both when IMP is installed or if used via the setup_environment.sh
script.