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IMP Reference Guide  2.12.0
The Integrative Modeling Platform
core/__init__.py
1 # This file was automatically generated by SWIG (http://www.swig.org).
2 # Version 3.0.10
3 #
4 # Do not make changes to this file unless you know what you are doing--modify
5 # the SWIG interface file instead.
6 
7 # This wrapper is part of IMP,
8 # Copyright 2007-2019 IMP Inventors. All rights reserved.
9 
10 from __future__ import print_function, division, absolute_import
11 
12 
13 
14 
15 from sys import version_info as _swig_python_version_info
16 if _swig_python_version_info >= (2, 7, 0):
17  def swig_import_helper():
18  import importlib
19  pkg = __name__.rpartition('.')[0]
20  mname = '.'.join((pkg, '_IMP_core')).lstrip('.')
21  try:
22  return importlib.import_module(mname)
23  except ImportError:
24  return importlib.import_module('_IMP_core')
25  _IMP_core = swig_import_helper()
26  del swig_import_helper
27 elif _swig_python_version_info >= (2, 6, 0):
28  def swig_import_helper():
29  from os.path import dirname
30  import imp
31  fp = None
32  try:
33  fp, pathname, description = imp.find_module('_IMP_core', [dirname(__file__)])
34  except ImportError:
35  import _IMP_core
36  return _IMP_core
37  if fp is not None:
38  try:
39  _mod = imp.load_module('_IMP_core', fp, pathname, description)
40  finally:
41  fp.close()
42  return _mod
43  _IMP_core = swig_import_helper()
44  del swig_import_helper
45 else:
46  import _IMP_core
47 del _swig_python_version_info
48 try:
49  _swig_property = property
50 except NameError:
51  pass # Python < 2.2 doesn't have 'property'.
52 
53 try:
54  import builtins as __builtin__
55 except ImportError:
56  import __builtin__
57 
58 def _swig_setattr_nondynamic(self, class_type, name, value, static=1):
59  if (name == "thisown"):
60  return self.this.own(value)
61  if (name == "this"):
62  if type(value).__name__ == 'SwigPyObject':
63  self.__dict__[name] = value
64  return
65  method = class_type.__swig_setmethods__.get(name, None)
66  if method:
67  return method(self, value)
68  if (not static):
69  object.__setattr__(self, name, value)
70  else:
71  raise AttributeError("You cannot add attributes to %s" % self)
72 
73 
74 def _swig_setattr(self, class_type, name, value):
75  return _swig_setattr_nondynamic(self, class_type, name, value, 0)
76 
77 
78 def _swig_getattr(self, class_type, name):
79  if (name == "thisown"):
80  return self.this.own()
81  method = class_type.__swig_getmethods__.get(name, None)
82  if method:
83  return method(self)
84  raise AttributeError("'%s' object has no attribute '%s'" % (class_type.__name__, name))
85 
86 
87 def _swig_repr(self):
88  try:
89  strthis = "proxy of " + self.this.__repr__()
90  except __builtin__.Exception:
91  strthis = ""
92  return "<%s.%s; %s >" % (self.__class__.__module__, self.__class__.__name__, strthis,)
93 
94 
95 def _swig_setattr_nondynamic_method(set):
96  def set_attr(self, name, value):
97  if (name == "thisown"):
98  return self.this.own(value)
99  if hasattr(self, name) or (name == "this"):
100  set(self, name, value)
101  else:
102  raise AttributeError("You cannot add attributes to %s" % self)
103  return set_attr
104 
105 
106 try:
107  import weakref
108  weakref_proxy = weakref.proxy
109 except __builtin__.Exception:
110  weakref_proxy = lambda x: x
111 
112 
113 class IMP_CORE_SwigPyIterator(object):
114  """Proxy of C++ swig::IMP_CORE_SwigPyIterator class."""
115 
116  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
117 
118  def __init__(self, *args, **kwargs):
119  raise AttributeError("No constructor defined - class is abstract")
120  __repr__ = _swig_repr
121  __swig_destroy__ = _IMP_core.delete_IMP_CORE_SwigPyIterator
122  __del__ = lambda self: None
123 
124  def value(self):
125  """value(IMP_CORE_SwigPyIterator self) -> PyObject *"""
126  return _IMP_core.IMP_CORE_SwigPyIterator_value(self)
127 
128 
129  def incr(self, n=1):
130  """
131  incr(IMP_CORE_SwigPyIterator self, size_t n=1) -> IMP_CORE_SwigPyIterator
132  incr(IMP_CORE_SwigPyIterator self) -> IMP_CORE_SwigPyIterator
133  """
134  return _IMP_core.IMP_CORE_SwigPyIterator_incr(self, n)
135 
136 
137  def decr(self, n=1):
138  """
139  decr(IMP_CORE_SwigPyIterator self, size_t n=1) -> IMP_CORE_SwigPyIterator
140  decr(IMP_CORE_SwigPyIterator self) -> IMP_CORE_SwigPyIterator
141  """
142  return _IMP_core.IMP_CORE_SwigPyIterator_decr(self, n)
143 
144 
145  def distance(self, x):
146  """distance(IMP_CORE_SwigPyIterator self, IMP_CORE_SwigPyIterator x) -> ptrdiff_t"""
147  return _IMP_core.IMP_CORE_SwigPyIterator_distance(self, x)
148 
149 
150  def equal(self, x):
151  """equal(IMP_CORE_SwigPyIterator self, IMP_CORE_SwigPyIterator x) -> bool"""
152  return _IMP_core.IMP_CORE_SwigPyIterator_equal(self, x)
153 
154 
155  def copy(self):
156  """copy(IMP_CORE_SwigPyIterator self) -> IMP_CORE_SwigPyIterator"""
157  return _IMP_core.IMP_CORE_SwigPyIterator_copy(self)
158 
159 
160  def next(self):
161  """next(IMP_CORE_SwigPyIterator self) -> PyObject *"""
162  return _IMP_core.IMP_CORE_SwigPyIterator_next(self)
163 
164 
165  def __next__(self):
166  """__next__(IMP_CORE_SwigPyIterator self) -> PyObject *"""
167  return _IMP_core.IMP_CORE_SwigPyIterator___next__(self)
168 
169 
170  def previous(self):
171  """previous(IMP_CORE_SwigPyIterator self) -> PyObject *"""
172  return _IMP_core.IMP_CORE_SwigPyIterator_previous(self)
173 
174 
175  def advance(self, n):
176  """advance(IMP_CORE_SwigPyIterator self, ptrdiff_t n) -> IMP_CORE_SwigPyIterator"""
177  return _IMP_core.IMP_CORE_SwigPyIterator_advance(self, n)
178 
179 
180  def __eq__(self, x):
181  """__eq__(IMP_CORE_SwigPyIterator self, IMP_CORE_SwigPyIterator x) -> bool"""
182  return _IMP_core.IMP_CORE_SwigPyIterator___eq__(self, x)
183 
184 
185  def __ne__(self, x):
186  """__ne__(IMP_CORE_SwigPyIterator self, IMP_CORE_SwigPyIterator x) -> bool"""
187  return _IMP_core.IMP_CORE_SwigPyIterator___ne__(self, x)
188 
189 
190  def __iadd__(self, n):
191  """__iadd__(IMP_CORE_SwigPyIterator self, ptrdiff_t n) -> IMP_CORE_SwigPyIterator"""
192  return _IMP_core.IMP_CORE_SwigPyIterator___iadd__(self, n)
193 
194 
195  def __isub__(self, n):
196  """__isub__(IMP_CORE_SwigPyIterator self, ptrdiff_t n) -> IMP_CORE_SwigPyIterator"""
197  return _IMP_core.IMP_CORE_SwigPyIterator___isub__(self, n)
198 
199 
200  def __add__(self, n):
201  """__add__(IMP_CORE_SwigPyIterator self, ptrdiff_t n) -> IMP_CORE_SwigPyIterator"""
202  return _IMP_core.IMP_CORE_SwigPyIterator___add__(self, n)
203 
204 
205  def __sub__(self, *args):
206  """
207  __sub__(IMP_CORE_SwigPyIterator self, ptrdiff_t n) -> IMP_CORE_SwigPyIterator
208  __sub__(IMP_CORE_SwigPyIterator self, IMP_CORE_SwigPyIterator x) -> ptrdiff_t
209  """
210  return _IMP_core.IMP_CORE_SwigPyIterator___sub__(self, *args)
211 
212  def __iter__(self):
213  return self
214 IMP_CORE_SwigPyIterator_swigregister = _IMP_core.IMP_CORE_SwigPyIterator_swigregister
215 IMP_CORE_SwigPyIterator_swigregister(IMP_CORE_SwigPyIterator)
216 
217 
218 _value_types=[]
219 _object_types=[]
220 _raii_types=[]
221 _plural_types=[]
222 
223 IMP_DEBUG = _IMP_core.IMP_DEBUG
224 IMP_RELEASE = _IMP_core.IMP_RELEASE
225 IMP_SILENT = _IMP_core.IMP_SILENT
226 IMP_PROGRESS = _IMP_core.IMP_PROGRESS
227 IMP_TERSE = _IMP_core.IMP_TERSE
228 IMP_VERBOSE = _IMP_core.IMP_VERBOSE
229 IMP_MEMORY = _IMP_core.IMP_MEMORY
230 IMP_NONE = _IMP_core.IMP_NONE
231 IMP_USAGE = _IMP_core.IMP_USAGE
232 IMP_INTERNAL = _IMP_core.IMP_INTERNAL
233 IMP_KERNEL_HAS_LOG4CXX = _IMP_core.IMP_KERNEL_HAS_LOG4CXX
234 IMP_COMPILER_HAS_AUTO = _IMP_core.IMP_COMPILER_HAS_AUTO
235 IMP_COMPILER_HAS_DEBUG_VECTOR = _IMP_core.IMP_COMPILER_HAS_DEBUG_VECTOR
236 IMP_COMPILER_HAS_UNIQUE_PTR = _IMP_core.IMP_COMPILER_HAS_UNIQUE_PTR
237 IMP_KERNEL_HAS_BOOST_RANDOM = _IMP_core.IMP_KERNEL_HAS_BOOST_RANDOM
238 IMP_KERNEL_HAS_NUMPY = _IMP_core.IMP_KERNEL_HAS_NUMPY
239 IMP_KERNEL_HAS_GPERFTOOLS = _IMP_core.IMP_KERNEL_HAS_GPERFTOOLS
240 IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER = _IMP_core.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER
241 IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER = _IMP_core.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER
242 IMPKERNEL_SHOW_WARNINGS = _IMP_core.IMPKERNEL_SHOW_WARNINGS
243 
244 import sys
245 class _DirectorObjects(object):
246  """@internal Simple class to keep references to director objects
247  to prevent premature deletion."""
248  def __init__(self):
249  self._objects = []
250  def register(self, obj):
251  """Take a reference to a director object; will only work for
252  refcounted C++ classes"""
253  if hasattr(obj, 'get_ref_count'):
254  self._objects.append(obj)
255  def cleanup(self):
256  """Only drop our reference and allow cleanup by Python if no other
257  Python references exist (we hold 3 references: one in self._objects,
258  one in x, and one in the argument list for getrefcount) *and* no
259  other C++ references exist (the Python object always holds one)"""
260  objs = [x for x in self._objects if sys.getrefcount(x) > 3 \
261  or x.get_ref_count() > 1]
262 # Do in two steps so the references are kept until the end of the
263 # function (deleting references may trigger a fresh call to this method)
264  self._objects = objs
265  def get_object_count(self):
266  """Get number of director objects (useful for testing only)"""
267  return len(self._objects)
268 _director_objects = _DirectorObjects()
269 
270 class _ostream(object):
271  """Proxy of C++ std::ostream class."""
272 
273  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
274 
275  def __init__(self, *args, **kwargs):
276  raise AttributeError("No constructor defined")
277  __repr__ = _swig_repr
278 
279  def write(self, osa_buf):
280  """write(_ostream self, char const * osa_buf)"""
281  return _IMP_core._ostream_write(self, osa_buf)
282 
283 _ostream_swigregister = _IMP_core._ostream_swigregister
284 _ostream_swigregister(_ostream)
285 
286 IMP_COMPILER_HAS_OVERRIDE = _IMP_core.IMP_COMPILER_HAS_OVERRIDE
287 IMP_COMPILER_HAS_FINAL = _IMP_core.IMP_COMPILER_HAS_FINAL
288 IMP_HAS_NOEXCEPT = _IMP_core.IMP_HAS_NOEXCEPT
289 IMP_C_OPEN_BINARY = _IMP_core.IMP_C_OPEN_BINARY
290 import IMP
291 IMP_CGAL_HAS_BOOST_FILESYSTEM = _IMP_core.IMP_CGAL_HAS_BOOST_FILESYSTEM
292 IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS = _IMP_core.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS
293 IMP_CGAL_HAS_BOOST_RANDOM = _IMP_core.IMP_CGAL_HAS_BOOST_RANDOM
294 IMP_CGAL_HAS_BOOST_SYSTEM = _IMP_core.IMP_CGAL_HAS_BOOST_SYSTEM
295 IMP_CGAL_HAS_NUMPY = _IMP_core.IMP_CGAL_HAS_NUMPY
296 IMPCGAL_SHOW_WARNINGS = _IMP_core.IMPCGAL_SHOW_WARNINGS
297 import IMP.cgal
298 IMP_ALGEBRA_HAS_IMP_CGAL = _IMP_core.IMP_ALGEBRA_HAS_IMP_CGAL
299 IMP_ALGEBRA_HAS_BOOST_FILESYSTEM = _IMP_core.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM
300 IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS = _IMP_core.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS
301 IMP_ALGEBRA_HAS_BOOST_RANDOM = _IMP_core.IMP_ALGEBRA_HAS_BOOST_RANDOM
302 IMP_ALGEBRA_HAS_BOOST_SYSTEM = _IMP_core.IMP_ALGEBRA_HAS_BOOST_SYSTEM
303 IMP_ALGEBRA_HAS_CGAL = _IMP_core.IMP_ALGEBRA_HAS_CGAL
304 IMP_ALGEBRA_HAS_NUMPY = _IMP_core.IMP_ALGEBRA_HAS_NUMPY
305 IMP_ALGEBRA_HAS_ANN = _IMP_core.IMP_ALGEBRA_HAS_ANN
306 IMPALGEBRA_SHOW_WARNINGS = _IMP_core.IMPALGEBRA_SHOW_WARNINGS
307 import IMP.algebra
308 IMP_DISPLAY_HAS_IMP_CGAL = _IMP_core.IMP_DISPLAY_HAS_IMP_CGAL
309 IMP_DISPLAY_HAS_BOOST_FILESYSTEM = _IMP_core.IMP_DISPLAY_HAS_BOOST_FILESYSTEM
310 IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS = _IMP_core.IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS
311 IMP_DISPLAY_HAS_BOOST_RANDOM = _IMP_core.IMP_DISPLAY_HAS_BOOST_RANDOM
312 IMP_DISPLAY_HAS_BOOST_SYSTEM = _IMP_core.IMP_DISPLAY_HAS_BOOST_SYSTEM
313 IMP_DISPLAY_HAS_CGAL = _IMP_core.IMP_DISPLAY_HAS_CGAL
314 IMP_DISPLAY_HAS_NUMPY = _IMP_core.IMP_DISPLAY_HAS_NUMPY
315 IMPDISPLAY_SHOW_WARNINGS = _IMP_core.IMPDISPLAY_SHOW_WARNINGS
316 import IMP.display
317 IMP_SCORE_FUNCTOR_HAS_IMP_CGAL = _IMP_core.IMP_SCORE_FUNCTOR_HAS_IMP_CGAL
318 IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM = _IMP_core.IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM
319 IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS = _IMP_core.IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS
320 IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM = _IMP_core.IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM
321 IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM = _IMP_core.IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM
322 IMP_SCORE_FUNCTOR_HAS_CGAL = _IMP_core.IMP_SCORE_FUNCTOR_HAS_CGAL
323 IMP_SCORE_FUNCTOR_HAS_HDF5 = _IMP_core.IMP_SCORE_FUNCTOR_HAS_HDF5
324 IMP_SCORE_FUNCTOR_HAS_NUMPY = _IMP_core.IMP_SCORE_FUNCTOR_HAS_NUMPY
325 IMPSCOREFUNCTOR_SHOW_WARNINGS = _IMP_core.IMPSCOREFUNCTOR_SHOW_WARNINGS
326 import IMP.score_functor
327 IMP_CORE_HAS_IMP_CGAL = _IMP_core.IMP_CORE_HAS_IMP_CGAL
328 IMP_CORE_HAS_IMP_KERNEL = _IMP_core.IMP_CORE_HAS_IMP_KERNEL
329 IMP_CORE_HAS_BOOST_FILESYSTEM = _IMP_core.IMP_CORE_HAS_BOOST_FILESYSTEM
330 IMP_CORE_HAS_BOOST_PROGRAMOPTIONS = _IMP_core.IMP_CORE_HAS_BOOST_PROGRAMOPTIONS
331 IMP_CORE_HAS_BOOST_RANDOM = _IMP_core.IMP_CORE_HAS_BOOST_RANDOM
332 IMP_CORE_HAS_BOOST_SYSTEM = _IMP_core.IMP_CORE_HAS_BOOST_SYSTEM
333 IMP_CORE_HAS_CGAL = _IMP_core.IMP_CORE_HAS_CGAL
334 IMP_CORE_HAS_HDF5 = _IMP_core.IMP_CORE_HAS_HDF5
335 IMP_CORE_HAS_NUMPY = _IMP_core.IMP_CORE_HAS_NUMPY
336 IMPCORE_SHOW_WARNINGS = _IMP_core.IMPCORE_SHOW_WARNINGS
337 class _OpenCubicSplineBase(IMP.UnaryFunction):
338  """Proxy of C++ IMP::score_functor::ScoreUnaryFunction<(IMP::score_functor::OpenCubicSpline)> class."""
339 
340  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
341  __repr__ = _swig_repr
342 
343  def __init__(self, *args):
344  """
345  __init__(IMP::score_functor::ScoreUnaryFunction<(IMP::score_functor::OpenCubicSpline)> self, IMP::score_functor::OpenCubicSpline const & score, std::string name) -> _OpenCubicSplineBase
346  __init__(IMP::score_functor::ScoreUnaryFunction<(IMP::score_functor::OpenCubicSpline)> self, IMP::score_functor::OpenCubicSpline const & score) -> _OpenCubicSplineBase
347  """
348  this = _IMP_core.new__OpenCubicSplineBase(*args)
349  try:
350  self.this.append(this)
351  except __builtin__.Exception:
352  self.this = this
353 
354  def get_version_info(self):
355  """get_version_info(_OpenCubicSplineBase self) -> VersionInfo"""
356  return _IMP_core._OpenCubicSplineBase_get_version_info(self)
357 
358 _OpenCubicSplineBase_swigregister = _IMP_core._OpenCubicSplineBase_swigregister
359 _OpenCubicSplineBase_swigregister(_OpenCubicSplineBase)
360 
361 
362 _object_types.append("MonteCarloMover")
363 
364 
365 def _object_cast_to_MonteCarloMover(o):
366  """_object_cast_to_MonteCarloMover(Object o) -> MonteCarloMover"""
367  return _IMP_core._object_cast_to_MonteCarloMover(o)
368 
369 MonteCarloMoverResults=list
370 _plural_types.append("MonteCarloMoverResults")
371 _value_types.append("MonteCarloMoverResult")
372 
373 
374 _object_types.append("AngleRestraint")
375 
376 
377 def _object_cast_to_AngleRestraint(o):
378  """_object_cast_to_AngleRestraint(Object o) -> AngleRestraint"""
379  return _IMP_core._object_cast_to_AngleRestraint(o)
380 
381 _object_types.append("AngleTripletScore")
382 
383 
384 def _object_cast_to_AngleTripletScore(o):
385  """_object_cast_to_AngleTripletScore(Object o) -> AngleTripletScore"""
386  return _IMP_core._object_cast_to_AngleTripletScore(o)
387 
388 _object_types.append("AttributeSingletonScore")
389 
390 
391 def _object_cast_to_AttributeSingletonScore(o):
392  """_object_cast_to_AttributeSingletonScore(Object o) -> AttributeSingletonScore"""
393  return _IMP_core._object_cast_to_AttributeSingletonScore(o)
394 
395 _object_types.append("BallMover")
396 
397 
398 def _object_cast_to_BallMover(o):
399  """_object_cast_to_BallMover(Object o) -> BallMover"""
400  return _IMP_core._object_cast_to_BallMover(o)
401 
402 _object_types.append("SerialMover")
403 
404 
405 def _object_cast_to_SerialMover(o):
406  """_object_cast_to_SerialMover(Object o) -> SerialMover"""
407  return _IMP_core._object_cast_to_SerialMover(o)
408 
409 _object_types.append("SubsetMover")
410 
411 
412 def _object_cast_to_SubsetMover(o):
413  """_object_cast_to_SubsetMover(Object o) -> SubsetMover"""
414  return _IMP_core._object_cast_to_SubsetMover(o)
415 
416 _object_types.append("DirectionMover")
417 
418 
419 def _object_cast_to_DirectionMover(o):
420  """_object_cast_to_DirectionMover(Object o) -> DirectionMover"""
421  return _IMP_core._object_cast_to_DirectionMover(o)
422 
423 _object_types.append("SurfaceMover")
424 
425 
426 def _object_cast_to_SurfaceMover(o):
427  """_object_cast_to_SurfaceMover(Object o) -> SurfaceMover"""
428  return _IMP_core._object_cast_to_SurfaceMover(o)
429 
430 _object_types.append("BoundingBox3DSingletonScore")
431 
432 
433 def _object_cast_to_BoundingBox3DSingletonScore(o):
434  """_object_cast_to_BoundingBox3DSingletonScore(Object o) -> BoundingBox3DSingletonScore"""
435  return _IMP_core._object_cast_to_BoundingBox3DSingletonScore(o)
436 
437 _object_types.append("BoundingSphere3DSingletonScore")
438 
439 
440 def _object_cast_to_BoundingSphere3DSingletonScore(o):
441  """_object_cast_to_BoundingSphere3DSingletonScore(Object o) -> BoundingSphere3DSingletonScore"""
442  return _IMP_core._object_cast_to_BoundingSphere3DSingletonScore(o)
443 
444 _object_types.append("BoxSweepClosePairsFinder")
445 
446 
447 def _object_cast_to_BoxSweepClosePairsFinder(o):
448  """_object_cast_to_BoxSweepClosePairsFinder(Object o) -> BoxSweepClosePairsFinder"""
449  return _IMP_core._object_cast_to_BoxSweepClosePairsFinder(o)
450 
451 _object_types.append("NearestNeighborsClosePairsFinder")
452 
453 
454 def _object_cast_to_NearestNeighborsClosePairsFinder(o):
455  """_object_cast_to_NearestNeighborsClosePairsFinder(Object o) -> NearestNeighborsClosePairsFinder"""
456  return _IMP_core._object_cast_to_NearestNeighborsClosePairsFinder(o)
457 
458 _object_types.append("CentroidOfRefined")
459 
460 
461 def _object_cast_to_CentroidOfRefined(o):
462  """_object_cast_to_CentroidOfRefined(Object o) -> CentroidOfRefined"""
463  return _IMP_core._object_cast_to_CentroidOfRefined(o)
464 
465 _object_types.append("ChecksScoreState")
466 
467 
468 def _object_cast_to_ChecksScoreState(o):
469  """_object_cast_to_ChecksScoreState(Object o) -> ChecksScoreState"""
470  return _IMP_core._object_cast_to_ChecksScoreState(o)
471 
472 _object_types.append("ChildrenRefiner")
473 
474 
475 def _object_cast_to_ChildrenRefiner(o):
476  """_object_cast_to_ChildrenRefiner(Object o) -> ChildrenRefiner"""
477  return _IMP_core._object_cast_to_ChildrenRefiner(o)
478 
479 _object_types.append("ClosePairsFinder")
480 
481 
482 def _object_cast_to_ClosePairsFinder(o):
483  """_object_cast_to_ClosePairsFinder(Object o) -> ClosePairsFinder"""
484  return _IMP_core._object_cast_to_ClosePairsFinder(o)
485 
486 _object_types.append("ClosePairsPairScore")
487 
488 
489 def _object_cast_to_ClosePairsPairScore(o):
490  """_object_cast_to_ClosePairsPairScore(Object o) -> ClosePairsPairScore"""
491  return _IMP_core._object_cast_to_ClosePairsPairScore(o)
492 
493 _object_types.append("ClosedCubicSpline")
494 
495 
496 def _object_cast_to_ClosedCubicSpline(o):
497  """_object_cast_to_ClosedCubicSpline(Object o) -> ClosedCubicSpline"""
498  return _IMP_core._object_cast_to_ClosedCubicSpline(o)
499 
500 _object_types.append("ConjugateGradients")
501 
502 
503 def _object_cast_to_ConjugateGradients(o):
504  """_object_cast_to_ConjugateGradients(Object o) -> ConjugateGradients"""
505  return _IMP_core._object_cast_to_ConjugateGradients(o)
506 
507 _object_types.append("ConnectivityRestraint")
508 
509 
510 def _object_cast_to_ConnectivityRestraint(o):
511  """_object_cast_to_ConnectivityRestraint(Object o) -> ConnectivityRestraint"""
512  return _IMP_core._object_cast_to_ConnectivityRestraint(o)
513 
514 _object_types.append("ConstantRestraint")
515 
516 
517 def _object_cast_to_ConstantRestraint(o):
518  """_object_cast_to_ConstantRestraint(Object o) -> ConstantRestraint"""
519  return _IMP_core._object_cast_to_ConstantRestraint(o)
520 
521 _object_types.append("Cosine")
522 
523 
524 def _object_cast_to_Cosine(o):
525  """_object_cast_to_Cosine(Object o) -> Cosine"""
526  return _IMP_core._object_cast_to_Cosine(o)
527 
528 _object_types.append("CoverRefined")
529 
530 
531 def _object_cast_to_CoverRefined(o):
532  """_object_cast_to_CoverRefined(Object o) -> CoverRefined"""
533  return _IMP_core._object_cast_to_CoverRefined(o)
534 
535 _object_types.append("DerivativesFromRefined")
536 
537 
538 def _object_cast_to_DerivativesFromRefined(o):
539  """_object_cast_to_DerivativesFromRefined(Object o) -> DerivativesFromRefined"""
540  return _IMP_core._object_cast_to_DerivativesFromRefined(o)
541 
542 _object_types.append("DerivativesToRefined")
543 
544 
545 def _object_cast_to_DerivativesToRefined(o):
546  """_object_cast_to_DerivativesToRefined(Object o) -> DerivativesToRefined"""
547  return _IMP_core._object_cast_to_DerivativesToRefined(o)
548 
549 _object_types.append("WeightedDerivativesToRefined")
550 
551 
552 def _object_cast_to_WeightedDerivativesToRefined(o):
553  """_object_cast_to_WeightedDerivativesToRefined(Object o) -> IMP::core::WeightedDerivativesToRefined *"""
554  return _IMP_core._object_cast_to_WeightedDerivativesToRefined(o)
555 
556 _object_types.append("DiameterRestraint")
557 
558 
559 def _object_cast_to_DiameterRestraint(o):
560  """_object_cast_to_DiameterRestraint(Object o) -> DiameterRestraint"""
561  return _IMP_core._object_cast_to_DiameterRestraint(o)
562 
563 _object_types.append("DihedralRestraint")
564 
565 
566 def _object_cast_to_DihedralRestraint(o):
567  """_object_cast_to_DihedralRestraint(Object o) -> DihedralRestraint"""
568  return _IMP_core._object_cast_to_DihedralRestraint(o)
569 
570 _object_types.append("DistanceRestraint")
571 
572 
573 def _object_cast_to_DistanceRestraint(o):
574  """_object_cast_to_DistanceRestraint(Object o) -> DistanceRestraint"""
575  return _IMP_core._object_cast_to_DistanceRestraint(o)
576 
577 _object_types.append("DistanceToSingletonScore")
578 
579 
580 def _object_cast_to_DistanceToSingletonScore(o):
581  """_object_cast_to_DistanceToSingletonScore(Object o) -> DistanceToSingletonScore"""
582  return _IMP_core._object_cast_to_DistanceToSingletonScore(o)
583 
584 _object_types.append("ExcludedVolumeRestraint")
585 
586 
587 def _object_cast_to_ExcludedVolumeRestraint(o):
588  """_object_cast_to_ExcludedVolumeRestraint(Object o) -> ExcludedVolumeRestraint"""
589  return _IMP_core._object_cast_to_ExcludedVolumeRestraint(o)
590 
591 _object_types.append("FixedRefiner")
592 
593 
594 def _object_cast_to_FixedRefiner(o):
595  """_object_cast_to_FixedRefiner(Object o) -> FixedRefiner"""
596  return _IMP_core._object_cast_to_FixedRefiner(o)
597 
598 _object_types.append("GridClosePairsFinder")
599 
600 
601 def _object_cast_to_GridClosePairsFinder(o):
602  """_object_cast_to_GridClosePairsFinder(Object o) -> GridClosePairsFinder"""
603  return _IMP_core._object_cast_to_GridClosePairsFinder(o)
604 
605 _object_types.append("Harmonic")
606 
607 
608 def _object_cast_to_Harmonic(o):
609  """_object_cast_to_Harmonic(Object o) -> Harmonic"""
610  return _IMP_core._object_cast_to_Harmonic(o)
611 
612 _object_types.append("HarmonicWell")
613 
614 
615 def _object_cast_to_HarmonicWell(o):
616  """_object_cast_to_HarmonicWell(Object o) -> HarmonicWell"""
617  return _IMP_core._object_cast_to_HarmonicWell(o)
618 
619 _object_types.append("HarmonicLowerBound")
620 
621 
622 def _object_cast_to_HarmonicLowerBound(o):
623  """_object_cast_to_HarmonicLowerBound(Object o) -> HarmonicLowerBound"""
624  return _IMP_core._object_cast_to_HarmonicLowerBound(o)
625 
626 _object_types.append("HarmonicUpperBound")
627 
628 
629 def _object_cast_to_HarmonicUpperBound(o):
630  """_object_cast_to_HarmonicUpperBound(Object o) -> HarmonicUpperBound"""
631  return _IMP_core._object_cast_to_HarmonicUpperBound(o)
632 
633 _object_types.append("HarmonicSphereDistancePairScore")
634 
635 
636 def _object_cast_to_HarmonicSphereDistancePairScore(o):
637  """_object_cast_to_HarmonicSphereDistancePairScore(Object o) -> HarmonicSphereDistancePairScore"""
638  return _IMP_core._object_cast_to_HarmonicSphereDistancePairScore(o)
639 
640 _object_types.append("HarmonicUpperBoundSphereDistancePairScore")
641 
642 
643 def _object_cast_to_HarmonicUpperBoundSphereDistancePairScore(o):
644  """_object_cast_to_HarmonicUpperBoundSphereDistancePairScore(Object o) -> HarmonicUpperBoundSphereDistancePairScore"""
645  return _IMP_core._object_cast_to_HarmonicUpperBoundSphereDistancePairScore(o)
646 
647 _object_types.append("HarmonicUpperBoundSphereDiameterPairScore")
648 
649 
650 def _object_cast_to_HarmonicUpperBoundSphereDiameterPairScore(o):
651  """_object_cast_to_HarmonicUpperBoundSphereDiameterPairScore(Object o) -> HarmonicUpperBoundSphereDiameterPairScore"""
652  return _IMP_core._object_cast_to_HarmonicUpperBoundSphereDiameterPairScore(o)
653 
654 _object_types.append("HarmonicSurfaceDistancePairScore")
655 
656 
657 def _object_cast_to_HarmonicSurfaceDistancePairScore(o):
658  """_object_cast_to_HarmonicSurfaceDistancePairScore(Object o) -> HarmonicSurfaceDistancePairScore"""
659  return _IMP_core._object_cast_to_HarmonicSurfaceDistancePairScore(o)
660 
661 _object_types.append("HarmonicSurfaceHeightPairScore")
662 
663 
664 def _object_cast_to_HarmonicSurfaceHeightPairScore(o):
665  """_object_cast_to_HarmonicSurfaceHeightPairScore(Object o) -> HarmonicSurfaceHeightPairScore"""
666  return _IMP_core._object_cast_to_HarmonicSurfaceHeightPairScore(o)
667 
668 _object_types.append("HarmonicSurfaceDepthPairScore")
669 
670 
671 def _object_cast_to_HarmonicSurfaceDepthPairScore(o):
672  """_object_cast_to_HarmonicSurfaceDepthPairScore(Object o) -> HarmonicSurfaceDepthPairScore"""
673  return _IMP_core._object_cast_to_HarmonicSurfaceDepthPairScore(o)
674 
675 _object_types.append("WeightedSum")
676 
677 
678 def _object_cast_to_WeightedSum(o):
679  """_object_cast_to_WeightedSum(Object o) -> WeightedSum"""
680  return _IMP_core._object_cast_to_WeightedSum(o)
681 
682 _object_types.append("WeightedSumOfExponential")
683 
684 
685 def _object_cast_to_WeightedSumOfExponential(o):
686  """_object_cast_to_WeightedSumOfExponential(Object o) -> WeightedSumOfExponential"""
687  return _IMP_core._object_cast_to_WeightedSumOfExponential(o)
688 
689 _object_types.append("IncrementalScoringFunction")
690 
691 
692 def _object_cast_to_IncrementalScoringFunction(o):
693  """_object_cast_to_IncrementalScoringFunction(Object o) -> IncrementalScoringFunction"""
694  return _IMP_core._object_cast_to_IncrementalScoringFunction(o)
695 
696 _object_types.append("KClosePairsPairScore")
697 
698 
699 def _object_cast_to_KClosePairsPairScore(o):
700  """_object_cast_to_KClosePairsPairScore(Object o) -> KClosePairsPairScore"""
701  return _IMP_core._object_cast_to_KClosePairsPairScore(o)
702 
703 _object_types.append("LeavesRefiner")
704 
705 
706 def _object_cast_to_LeavesRefiner(o):
707  """_object_cast_to_LeavesRefiner(Object o) -> LeavesRefiner"""
708  return _IMP_core._object_cast_to_LeavesRefiner(o)
709 
710 _object_types.append("Linear")
711 
712 
713 def _object_cast_to_Linear(o):
714  """_object_cast_to_Linear(Object o) -> Linear"""
715  return _IMP_core._object_cast_to_Linear(o)
716 
717 _object_types.append("LogNormalMover")
718 
719 
720 def _object_cast_to_LogNormalMover(o):
721  """_object_cast_to_LogNormalMover(Object o) -> LogNormalMover"""
722  return _IMP_core._object_cast_to_LogNormalMover(o)
723 
724 _object_types.append("MCCGSampler")
725 
726 
727 def _object_cast_to_MCCGSampler(o):
728  """_object_cast_to_MCCGSampler(Object o) -> MCCGSampler"""
729  return _IMP_core._object_cast_to_MCCGSampler(o)
730 
731 _object_types.append("MonteCarlo")
732 
733 
734 def _object_cast_to_MonteCarlo(o):
735  """_object_cast_to_MonteCarlo(Object o) -> MonteCarlo"""
736  return _IMP_core._object_cast_to_MonteCarlo(o)
737 
738 _object_types.append("MonteCarloWithLocalOptimization")
739 
740 
741 def _object_cast_to_MonteCarloWithLocalOptimization(o):
742  """_object_cast_to_MonteCarloWithLocalOptimization(Object o) -> MonteCarloWithLocalOptimization"""
743  return _IMP_core._object_cast_to_MonteCarloWithLocalOptimization(o)
744 
745 _object_types.append("MonteCarloWithBasinHopping")
746 
747 
748 def _object_cast_to_MonteCarloWithBasinHopping(o):
749  """_object_cast_to_MonteCarloWithBasinHopping(Object o) -> MonteCarloWithBasinHopping"""
750  return _IMP_core._object_cast_to_MonteCarloWithBasinHopping(o)
751 
752 _object_types.append("MSConnectivityRestraint")
753 
754 
755 def _object_cast_to_MSConnectivityRestraint(o):
756  """_object_cast_to_MSConnectivityRestraint(Object o) -> MSConnectivityRestraint"""
757  return _IMP_core._object_cast_to_MSConnectivityRestraint(o)
758 
759 _object_types.append("NeighborsTable")
760 
761 
762 def _object_cast_to_NeighborsTable(o):
763  """_object_cast_to_NeighborsTable(Object o) -> NeighborsTable"""
764  return _IMP_core._object_cast_to_NeighborsTable(o)
765 
766 _object_types.append("NormalMover")
767 
768 
769 def _object_cast_to_NormalMover(o):
770  """_object_cast_to_NormalMover(Object o) -> NormalMover"""
771  return _IMP_core._object_cast_to_NormalMover(o)
772 
773 _object_types.append("NormalizedSphereDistancePairScore")
774 
775 
776 def _object_cast_to_NormalizedSphereDistancePairScore(o):
777  """_object_cast_to_NormalizedSphereDistancePairScore(Object o) -> NormalizedSphereDistancePairScore"""
778  return _IMP_core._object_cast_to_NormalizedSphereDistancePairScore(o)
779 
780 _object_types.append("OpenCubicSpline")
781 
782 
783 def _object_cast_to_OpenCubicSpline(o):
784  """_object_cast_to_OpenCubicSpline(Object o) -> OpenCubicSpline"""
785  return _IMP_core._object_cast_to_OpenCubicSpline(o)
786 
787 _object_types.append("PairConstraint")
788 
789 
790 def _object_cast_to_PairConstraint(o):
791  """_object_cast_to_PairConstraint(Object o) -> PairConstraint"""
792  return _IMP_core._object_cast_to_PairConstraint(o)
793 
794 _object_types.append("PairRestraint")
795 
796 
797 def _object_cast_to_PairRestraint(o):
798  """_object_cast_to_PairRestraint(Object o) -> PairRestraint"""
799  return _IMP_core._object_cast_to_PairRestraint(o)
800 
801 _object_types.append("QuadConstraint")
802 
803 
804 def _object_cast_to_QuadConstraint(o):
805  """_object_cast_to_QuadConstraint(Object o) -> QuadConstraint"""
806  return _IMP_core._object_cast_to_QuadConstraint(o)
807 
808 _object_types.append("QuadRestraint")
809 
810 
811 def _object_cast_to_QuadRestraint(o):
812  """_object_cast_to_QuadRestraint(Object o) -> QuadRestraint"""
813  return _IMP_core._object_cast_to_QuadRestraint(o)
814 
815 _object_types.append("QuadraticClosePairsFinder")
816 
817 
818 def _object_cast_to_QuadraticClosePairsFinder(o):
819  """_object_cast_to_QuadraticClosePairsFinder(Object o) -> QuadraticClosePairsFinder"""
820  return _IMP_core._object_cast_to_QuadraticClosePairsFinder(o)
821 
822 _object_types.append("RefinedPairsPairScore")
823 
824 
825 def _object_cast_to_RefinedPairsPairScore(o):
826  """_object_cast_to_RefinedPairsPairScore(Object o) -> RefinedPairsPairScore"""
827  return _IMP_core._object_cast_to_RefinedPairsPairScore(o)
828 
829 _object_types.append("RestraintsScoringFunction")
830 
831 
832 def _object_cast_to_RestraintsScoringFunction(o):
833  """_object_cast_to_RestraintsScoringFunction(Object o) -> RestraintsScoringFunction"""
834  return _IMP_core._object_cast_to_RestraintsScoringFunction(o)
835 
836 _object_types.append("RigidBodyDistancePairScore")
837 
838 
839 def _object_cast_to_RigidBodyDistancePairScore(o):
840  """_object_cast_to_RigidBodyDistancePairScore(Object o) -> RigidBodyDistancePairScore"""
841  return _IMP_core._object_cast_to_RigidBodyDistancePairScore(o)
842 
843 _object_types.append("RigidBodyAnglePairScore")
844 
845 
846 def _object_cast_to_RigidBodyAnglePairScore(o):
847  """_object_cast_to_RigidBodyAnglePairScore(Object o) -> RigidBodyAnglePairScore"""
848  return _IMP_core._object_cast_to_RigidBodyAnglePairScore(o)
849 
850 _object_types.append("RigidBodyMover")
851 
852 
853 def _object_cast_to_RigidBodyMover(o):
854  """_object_cast_to_RigidBodyMover(Object o) -> RigidBodyMover"""
855  return _IMP_core._object_cast_to_RigidBodyMover(o)
856 
857 _object_types.append("RigidBodyTunneler")
858 
859 
860 def _object_cast_to_RigidBodyTunneler(o):
861  """_object_cast_to_RigidBodyTunneler(Object o) -> RigidBodyTunneler"""
862  return _IMP_core._object_cast_to_RigidBodyTunneler(o)
863 
864 _object_types.append("RigidBodyUmbrella")
865 
866 
867 def _object_cast_to_RigidBodyUmbrella(o):
868  """_object_cast_to_RigidBodyUmbrella(Object o) -> RigidBodyUmbrella"""
869  return _IMP_core._object_cast_to_RigidBodyUmbrella(o)
870 
871 _object_types.append("RigidClosePairsFinder")
872 
873 
874 def _object_cast_to_RigidClosePairsFinder(o):
875  """_object_cast_to_RigidClosePairsFinder(Object o) -> RigidClosePairsFinder"""
876  return _IMP_core._object_cast_to_RigidClosePairsFinder(o)
877 
878 _object_types.append("RigidMembersRefiner")
879 
880 
881 def _object_cast_to_RigidMembersRefiner(o):
882  """_object_cast_to_RigidMembersRefiner(Object o) -> RigidMembersRefiner"""
883  return _IMP_core._object_cast_to_RigidMembersRefiner(o)
884 
885 _object_types.append("SingletonConstraint")
886 
887 
888 def _object_cast_to_SingletonConstraint(o):
889  """_object_cast_to_SingletonConstraint(Object o) -> SingletonConstraint"""
890  return _IMP_core._object_cast_to_SingletonConstraint(o)
891 
892 _object_types.append("SingletonRestraint")
893 
894 
895 def _object_cast_to_SingletonRestraint(o):
896  """_object_cast_to_SingletonRestraint(Object o) -> SingletonRestraint"""
897  return _IMP_core._object_cast_to_SingletonRestraint(o)
898 
899 _object_types.append("SoftSpherePairScore")
900 
901 
902 def _object_cast_to_SoftSpherePairScore(o):
903  """_object_cast_to_SoftSpherePairScore(Object o) -> SoftSpherePairScore"""
904  return _IMP_core._object_cast_to_SoftSpherePairScore(o)
905 
906 _object_types.append("SphereDistancePairScore")
907 
908 
909 def _object_cast_to_SphereDistancePairScore(o):
910  """_object_cast_to_SphereDistancePairScore(Object o) -> SphereDistancePairScore"""
911  return _IMP_core._object_cast_to_SphereDistancePairScore(o)
912 
913 _object_types.append("SphereDistanceToSingletonScore")
914 
915 
916 def _object_cast_to_SphereDistanceToSingletonScore(o):
917  """_object_cast_to_SphereDistanceToSingletonScore(Object o) -> SphereDistanceToSingletonScore"""
918  return _IMP_core._object_cast_to_SphereDistanceToSingletonScore(o)
919 
920 _object_types.append("SoftSubSurfacePairScore")
921 
922 
923 def _object_cast_to_SoftSubSurfacePairScore(o):
924  """_object_cast_to_SoftSubSurfacePairScore(Object o) -> SoftSubSurfacePairScore"""
925  return _IMP_core._object_cast_to_SoftSubSurfacePairScore(o)
926 
927 _object_types.append("SoftSuperSurfacePairScore")
928 
929 
930 def _object_cast_to_SoftSuperSurfacePairScore(o):
931  """_object_cast_to_SoftSuperSurfacePairScore(Object o) -> SoftSuperSurfacePairScore"""
932  return _IMP_core._object_cast_to_SoftSuperSurfacePairScore(o)
933 
934 _object_types.append("SurfaceDistancePairScore")
935 
936 
937 def _object_cast_to_SurfaceDistancePairScore(o):
938  """_object_cast_to_SurfaceDistancePairScore(Object o) -> SurfaceDistancePairScore"""
939  return _IMP_core._object_cast_to_SurfaceDistancePairScore(o)
940 
941 _object_types.append("SurfaceHeightPairScore")
942 
943 
944 def _object_cast_to_SurfaceHeightPairScore(o):
945  """_object_cast_to_SurfaceHeightPairScore(Object o) -> SurfaceHeightPairScore"""
946  return _IMP_core._object_cast_to_SurfaceHeightPairScore(o)
947 
948 _object_types.append("SurfaceDepthPairScore")
949 
950 
951 def _object_cast_to_SurfaceDepthPairScore(o):
952  """_object_cast_to_SurfaceDepthPairScore(Object o) -> SurfaceDepthPairScore"""
953  return _IMP_core._object_cast_to_SurfaceDepthPairScore(o)
954 
955 _object_types.append("SurfaceTetheredChain")
956 
957 
958 def _object_cast_to_SurfaceTetheredChain(o):
959  """_object_cast_to_SurfaceTetheredChain(Object o) -> SurfaceTetheredChain"""
960  return _IMP_core._object_cast_to_SurfaceTetheredChain(o)
961 
962 _object_types.append("SurfaceSymmetryConstraint")
963 
964 
965 def _object_cast_to_SurfaceSymmetryConstraint(o):
966  """_object_cast_to_SurfaceSymmetryConstraint(Object o) -> SurfaceSymmetryConstraint"""
967  return _IMP_core._object_cast_to_SurfaceSymmetryConstraint(o)
968 
969 _object_types.append("SteepestDescent")
970 
971 
972 def _object_cast_to_SteepestDescent(o):
973  """_object_cast_to_SteepestDescent(Object o) -> SteepestDescent"""
974  return _IMP_core._object_cast_to_SteepestDescent(o)
975 
976 _object_types.append("TableRefiner")
977 
978 
979 def _object_cast_to_TableRefiner(o):
980  """_object_cast_to_TableRefiner(Object o) -> TableRefiner"""
981  return _IMP_core._object_cast_to_TableRefiner(o)
982 
983 _object_types.append("Transform")
984 
985 
986 def _object_cast_to_Transform(o):
987  """_object_cast_to_Transform(Object o) -> Transform"""
988  return _IMP_core._object_cast_to_Transform(o)
989 
990 _object_types.append("TransformationAndReflectionSymmetry")
991 
992 
993 def _object_cast_to_TransformationAndReflectionSymmetry(o):
994  """_object_cast_to_TransformationAndReflectionSymmetry(Object o) -> TransformationAndReflectionSymmetry"""
995  return _IMP_core._object_cast_to_TransformationAndReflectionSymmetry(o)
996 
997 _object_types.append("TransformationSymmetry")
998 
999 
1000 def _object_cast_to_TransformationSymmetry(o):
1001  """_object_cast_to_TransformationSymmetry(Object o) -> TransformationSymmetry"""
1002  return _IMP_core._object_cast_to_TransformationSymmetry(o)
1003 
1004 _object_types.append("TransformationSymmetryMover")
1005 
1006 
1007 def _object_cast_to_TransformationSymmetryMover(o):
1008  """_object_cast_to_TransformationSymmetryMover(Object o) -> TransformationSymmetryMover"""
1009  return _IMP_core._object_cast_to_TransformationSymmetryMover(o)
1010 
1011 _object_types.append("TransformedDistancePairScore")
1012 
1013 
1014 def _object_cast_to_TransformedDistancePairScore(o):
1015  """_object_cast_to_TransformedDistancePairScore(Object o) -> TransformedDistancePairScore"""
1016  return _IMP_core._object_cast_to_TransformedDistancePairScore(o)
1017 
1018 _object_types.append("TripletConstraint")
1019 
1020 
1021 def _object_cast_to_TripletConstraint(o):
1022  """_object_cast_to_TripletConstraint(Object o) -> TripletConstraint"""
1023  return _IMP_core._object_cast_to_TripletConstraint(o)
1024 
1025 _object_types.append("TripletRestraint")
1026 
1027 
1028 def _object_cast_to_TripletRestraint(o):
1029  """_object_cast_to_TripletRestraint(Object o) -> TripletRestraint"""
1030  return _IMP_core._object_cast_to_TripletRestraint(o)
1031 
1032 _object_types.append("TypedPairScore")
1033 
1034 
1035 def _object_cast_to_TypedPairScore(o):
1036  """_object_cast_to_TypedPairScore(Object o) -> TypedPairScore"""
1037  return _IMP_core._object_cast_to_TypedPairScore(o)
1038 
1039 _object_types.append("VolumeRestraint")
1040 
1041 
1042 def _object_cast_to_VolumeRestraint(o):
1043  """_object_cast_to_VolumeRestraint(Object o) -> VolumeRestraint"""
1044  return _IMP_core._object_cast_to_VolumeRestraint(o)
1045 
1046 _object_types.append("WeightedSphereDistancePairScore")
1047 
1048 
1049 def _object_cast_to_WeightedSphereDistancePairScore(o):
1050  """_object_cast_to_WeightedSphereDistancePairScore(Object o) -> WeightedSphereDistancePairScore"""
1051  return _IMP_core._object_cast_to_WeightedSphereDistancePairScore(o)
1052 
1053 _object_types.append("MoveStatisticsScoreState")
1054 
1055 
1056 def _object_cast_to_MoveStatisticsScoreState(o):
1057  """_object_cast_to_MoveStatisticsScoreState(Object o) -> MoveStatisticsScoreState"""
1058  return _IMP_core._object_cast_to_MoveStatisticsScoreState(o)
1059 
1060 _object_types.append("MinimumRestraint")
1061 
1062 
1063 def _object_cast_to_MinimumRestraint(o):
1064  """_object_cast_to_MinimumRestraint(Object o) -> MinimumRestraint"""
1065  return _IMP_core._object_cast_to_MinimumRestraint(o)
1066 
1067 _object_types.append("WriteRestraintScoresOptimizerState")
1068 
1069 
1070 def _object_cast_to_WriteRestraintScoresOptimizerState(o):
1071  """_object_cast_to_WriteRestraintScoresOptimizerState(Object o) -> WriteRestraintScoresOptimizerState"""
1072  return _IMP_core._object_cast_to_WriteRestraintScoresOptimizerState(o)
1073 
1074 _object_types.append("LateralSurfaceConstraint")
1075 
1076 
1077 def _object_cast_to_LateralSurfaceConstraint(o):
1078  """_object_cast_to_LateralSurfaceConstraint(Object o) -> LateralSurfaceConstraint"""
1079  return _IMP_core._object_cast_to_LateralSurfaceConstraint(o)
1080 
1081 _object_types.append("ConstantSingletonPredicate")
1082 
1083 
1084 def _object_cast_to_ConstantSingletonPredicate(o):
1085  """_object_cast_to_ConstantSingletonPredicate(Object o) -> ConstantSingletonPredicate"""
1086  return _IMP_core._object_cast_to_ConstantSingletonPredicate(o)
1087 
1088 _object_types.append("ConstantPairPredicate")
1089 
1090 
1091 def _object_cast_to_ConstantPairPredicate(o):
1092  """_object_cast_to_ConstantPairPredicate(Object o) -> ConstantPairPredicate"""
1093  return _IMP_core._object_cast_to_ConstantPairPredicate(o)
1094 
1095 _object_types.append("ConstantTripletPredicate")
1096 
1097 
1098 def _object_cast_to_ConstantTripletPredicate(o):
1099  """_object_cast_to_ConstantTripletPredicate(Object o) -> ConstantTripletPredicate"""
1100  return _IMP_core._object_cast_to_ConstantTripletPredicate(o)
1101 
1102 _object_types.append("ConstantQuadPredicate")
1103 
1104 
1105 def _object_cast_to_ConstantQuadPredicate(o):
1106  """_object_cast_to_ConstantQuadPredicate(Object o) -> ConstantQuadPredicate"""
1107  return _IMP_core._object_cast_to_ConstantQuadPredicate(o)
1108 
1109 _object_types.append("CoinFlipSingletonPredicate")
1110 
1111 
1112 def _object_cast_to_CoinFlipSingletonPredicate(o):
1113  """_object_cast_to_CoinFlipSingletonPredicate(Object o) -> CoinFlipSingletonPredicate"""
1114  return _IMP_core._object_cast_to_CoinFlipSingletonPredicate(o)
1115 
1116 _object_types.append("CoinFlipPairPredicate")
1117 
1118 
1119 def _object_cast_to_CoinFlipPairPredicate(o):
1120  """_object_cast_to_CoinFlipPairPredicate(Object o) -> CoinFlipPairPredicate"""
1121  return _IMP_core._object_cast_to_CoinFlipPairPredicate(o)
1122 
1123 _object_types.append("CoinFlipTripletPredicate")
1124 
1125 
1126 def _object_cast_to_CoinFlipTripletPredicate(o):
1127  """_object_cast_to_CoinFlipTripletPredicate(Object o) -> CoinFlipTripletPredicate"""
1128  return _IMP_core._object_cast_to_CoinFlipTripletPredicate(o)
1129 
1130 _object_types.append("CoinFlipQuadPredicate")
1131 
1132 
1133 def _object_cast_to_CoinFlipQuadPredicate(o):
1134  """_object_cast_to_CoinFlipQuadPredicate(Object o) -> CoinFlipQuadPredicate"""
1135  return _IMP_core._object_cast_to_CoinFlipQuadPredicate(o)
1136 
1137 _object_types.append("UnorderedTypeSingletonPredicate")
1138 
1139 
1140 def _object_cast_to_UnorderedTypeSingletonPredicate(o):
1141  """_object_cast_to_UnorderedTypeSingletonPredicate(Object o) -> UnorderedTypeSingletonPredicate"""
1142  return _IMP_core._object_cast_to_UnorderedTypeSingletonPredicate(o)
1143 
1144 _object_types.append("UnorderedTypePairPredicate")
1145 
1146 
1147 def _object_cast_to_UnorderedTypePairPredicate(o):
1148  """_object_cast_to_UnorderedTypePairPredicate(Object o) -> UnorderedTypePairPredicate"""
1149  return _IMP_core._object_cast_to_UnorderedTypePairPredicate(o)
1150 
1151 _object_types.append("UnorderedTypeTripletPredicate")
1152 
1153 
1154 def _object_cast_to_UnorderedTypeTripletPredicate(o):
1155  """_object_cast_to_UnorderedTypeTripletPredicate(Object o) -> UnorderedTypeTripletPredicate"""
1156  return _IMP_core._object_cast_to_UnorderedTypeTripletPredicate(o)
1157 
1158 _object_types.append("UnorderedTypeQuadPredicate")
1159 
1160 
1161 def _object_cast_to_UnorderedTypeQuadPredicate(o):
1162  """_object_cast_to_UnorderedTypeQuadPredicate(Object o) -> UnorderedTypeQuadPredicate"""
1163  return _IMP_core._object_cast_to_UnorderedTypeQuadPredicate(o)
1164 
1165 _object_types.append("OrderedTypeSingletonPredicate")
1166 
1167 
1168 def _object_cast_to_OrderedTypeSingletonPredicate(o):
1169  """_object_cast_to_OrderedTypeSingletonPredicate(Object o) -> OrderedTypeSingletonPredicate"""
1170  return _IMP_core._object_cast_to_OrderedTypeSingletonPredicate(o)
1171 
1172 _object_types.append("OrderedTypePairPredicate")
1173 
1174 
1175 def _object_cast_to_OrderedTypePairPredicate(o):
1176  """_object_cast_to_OrderedTypePairPredicate(Object o) -> OrderedTypePairPredicate"""
1177  return _IMP_core._object_cast_to_OrderedTypePairPredicate(o)
1178 
1179 _object_types.append("OrderedTypeTripletPredicate")
1180 
1181 
1182 def _object_cast_to_OrderedTypeTripletPredicate(o):
1183  """_object_cast_to_OrderedTypeTripletPredicate(Object o) -> OrderedTypeTripletPredicate"""
1184  return _IMP_core._object_cast_to_OrderedTypeTripletPredicate(o)
1185 
1186 _object_types.append("OrderedTypeQuadPredicate")
1187 
1188 
1189 def _object_cast_to_OrderedTypeQuadPredicate(o):
1190  """_object_cast_to_OrderedTypeQuadPredicate(Object o) -> OrderedTypeQuadPredicate"""
1191  return _IMP_core._object_cast_to_OrderedTypeQuadPredicate(o)
1192 
1193 _object_types.append("AllSameSingletonPredicate")
1194 
1195 
1196 def _object_cast_to_AllSameSingletonPredicate(o):
1197  """_object_cast_to_AllSameSingletonPredicate(Object o) -> AllSameSingletonPredicate"""
1198  return _IMP_core._object_cast_to_AllSameSingletonPredicate(o)
1199 
1200 _object_types.append("AllSamePairPredicate")
1201 
1202 
1203 def _object_cast_to_AllSamePairPredicate(o):
1204  """_object_cast_to_AllSamePairPredicate(Object o) -> AllSamePairPredicate"""
1205  return _IMP_core._object_cast_to_AllSamePairPredicate(o)
1206 
1207 _object_types.append("AllSameTripletPredicate")
1208 
1209 
1210 def _object_cast_to_AllSameTripletPredicate(o):
1211  """_object_cast_to_AllSameTripletPredicate(Object o) -> AllSameTripletPredicate"""
1212  return _IMP_core._object_cast_to_AllSameTripletPredicate(o)
1213 
1214 _object_types.append("AllSameQuadPredicate")
1215 
1216 
1217 def _object_cast_to_AllSameQuadPredicate(o):
1218  """_object_cast_to_AllSameQuadPredicate(Object o) -> AllSameQuadPredicate"""
1219  return _IMP_core._object_cast_to_AllSameQuadPredicate(o)
1220 
1221 def XYZs(l=[]):
1222  return [XYZ(x) for x in l]
1223 _plural_types.append("XYZs")
1224 
1225 
1226 _value_types.append("XYZ")
1227 
1228 
1229 def XYZRs(l=[]):
1230  return [XYZR(x) for x in l]
1231 _plural_types.append("XYZRs")
1232 
1233 
1234 _value_types.append("XYZR")
1235 
1236 
1237 def RigidBodies(l=[]):
1238  return [RigidBody(x) for x in l]
1239 _plural_types.append("RigidBodies")
1240 
1241 
1242 _value_types.append("RigidBody")
1243 
1244 
1245 def RigidBodyMembers(l=[]):
1246  return [RigidBodyMember(x) for x in l]
1247 _plural_types.append("RigidBodyMembers")
1248 
1249 
1250 _value_types.append("RigidBodyMember")
1251 
1252 
1253 def RigidMembers(l=[]):
1254  return [RigidMember(x) for x in l]
1255 _plural_types.append("RigidMembers")
1256 
1257 
1258 _value_types.append("RigidMember")
1259 
1260 
1261 def NonRigidMembers(l=[]):
1262  return [NonRigidMember(x) for x in l]
1263 _plural_types.append("NonRigidMembers")
1264 
1265 
1266 _value_types.append("NonRigidMember")
1267 
1268 
1269 def Centroids(l=[]):
1270  return [Centroid(x) for x in l]
1271 _plural_types.append("Centroids")
1272 
1273 
1274 _value_types.append("Centroid")
1275 
1276 
1277 def Covers(l=[]):
1278  return [Cover(x) for x in l]
1279 _plural_types.append("Covers")
1280 
1281 
1282 _value_types.append("Cover")
1283 
1284 
1285 def References(l=[]):
1286  return [Reference(x) for x in l]
1287 _plural_types.append("References")
1288 
1289 
1290 _value_types.append("Reference")
1291 
1292 
1293 ParticleTypes=list
1294 _plural_types.append("ParticleTypes")
1295 _value_types.append("ParticleType")
1296 
1297 
1298 def Typeds(l=[]):
1299  return [Typed(x) for x in l]
1300 _plural_types.append("Typeds")
1301 
1302 
1303 _value_types.append("Typed")
1304 
1305 
1306 def GenericHierarchies(l=[]):
1307  return [Hierarchy(x) for x in l]
1308 _plural_types.append("GenericHierarchies")
1309 
1310 
1311 _value_types.append("Hierarchy")
1312 
1313 
1314 def Gaussians(l=[]):
1315  return [Gaussian(x) for x in l]
1316 _plural_types.append("Gaussians")
1317 
1318 
1319 _value_types.append("Gaussian")
1320 
1321 
1322 def Directions(l=[]):
1323  return [Direction(x) for x in l]
1324 _plural_types.append("Directions")
1325 
1326 
1327 _value_types.append("Direction")
1328 
1329 
1330 def DirectionAngles(l=[]):
1331  return [DirectionAngle(x) for x in l]
1332 _plural_types.append("DirectionAngles")
1333 
1334 
1335 _value_types.append("DirectionAngle")
1336 
1337 
1338 def Surfaces(l=[]):
1339  return [Surface(x) for x in l]
1340 _plural_types.append("Surfaces")
1341 
1342 
1343 _value_types.append("Surface")
1344 
1345 
1346 def Provenances(l=[]):
1347  return [Provenance(x) for x in l]
1348 _plural_types.append("Provenances")
1349 
1350 
1351 _value_types.append("Provenance")
1352 
1353 
1354 def StructureProvenances(l=[]):
1355  return [StructureProvenance(x) for x in l]
1356 _plural_types.append("StructureProvenances")
1357 
1358 
1359 _value_types.append("StructureProvenance")
1360 
1361 
1362 def SampleProvenances(l=[]):
1363  return [SampleProvenance(x) for x in l]
1364 _plural_types.append("SampleProvenances")
1365 
1366 
1367 _value_types.append("SampleProvenance")
1368 
1369 
1370 def ClusterProvenances(l=[]):
1371  return [ClusterProvenance(x) for x in l]
1372 _plural_types.append("ClusterProvenances")
1373 
1374 
1375 _value_types.append("ClusterProvenance")
1376 
1377 
1378 def CombineProvenances(l=[]):
1379  return [CombineProvenance(x) for x in l]
1380 _plural_types.append("CombineProvenances")
1381 
1382 
1383 _value_types.append("CombineProvenance")
1384 
1385 
1386 def FilterProvenances(l=[]):
1387  return [FilterProvenance(x) for x in l]
1388 _plural_types.append("FilterProvenances")
1389 
1390 
1391 _value_types.append("FilterProvenance")
1392 
1393 
1394 def ScriptProvenances(l=[]):
1395  return [ScriptProvenance(x) for x in l]
1396 _plural_types.append("ScriptProvenances")
1397 
1398 
1399 _value_types.append("ScriptProvenance")
1400 
1401 
1402 def SoftwareProvenances(l=[]):
1403  return [SoftwareProvenance(x) for x in l]
1404 _plural_types.append("SoftwareProvenances")
1405 
1406 
1407 _value_types.append("SoftwareProvenance")
1408 
1409 
1410 def Provenanceds(l=[]):
1411  return [Provenanced(x) for x in l]
1412 _plural_types.append("Provenanceds")
1413 
1414 
1415 _value_types.append("Provenanced")
1416 
1417 
1418 HierarchyCounters=list
1419 _plural_types.append("HierarchyCounters")
1420 _value_types.append("HierarchyCounter")
1421 
1422 
1423 HierarchyTraitsList=list
1424 _plural_types.append("HierarchyTraitsList")
1425 _value_types.append("HierarchyTraits")
1426 
1427 
1428 _object_types.append("TruncatedHarmonicBound")
1429 
1430 
1431 def _object_cast_to_TruncatedHarmonicBound(o):
1432  """_object_cast_to_TruncatedHarmonicBound(Object o) -> TruncatedHarmonicBound"""
1433  return _IMP_core._object_cast_to_TruncatedHarmonicBound(o)
1434 
1435 _object_types.append("TruncatedHarmonicLowerBound")
1436 
1437 
1438 def _object_cast_to_TruncatedHarmonicLowerBound(o):
1439  """_object_cast_to_TruncatedHarmonicLowerBound(Object o) -> TruncatedHarmonicLowerBound"""
1440  return _IMP_core._object_cast_to_TruncatedHarmonicLowerBound(o)
1441 
1442 _object_types.append("TruncatedHarmonicUpperBound")
1443 
1444 
1445 def _object_cast_to_TruncatedHarmonicUpperBound(o):
1446  """_object_cast_to_TruncatedHarmonicUpperBound(Object o) -> TruncatedHarmonicUpperBound"""
1447  return _IMP_core._object_cast_to_TruncatedHarmonicUpperBound(o)
1448 
1449 _object_types.append("HarmonicDistancePairScore")
1450 
1451 
1452 def _object_cast_to_HarmonicDistancePairScore(o):
1453  """_object_cast_to_HarmonicDistancePairScore(Object o) -> HarmonicDistancePairScore"""
1454  return _IMP_core._object_cast_to_HarmonicDistancePairScore(o)
1455 
1456 _object_types.append("DistancePairScore")
1457 
1458 
1459 def _object_cast_to_DistancePairScore(o):
1460  """_object_cast_to_DistancePairScore(Object o) -> DistancePairScore"""
1461  return _IMP_core._object_cast_to_DistancePairScore(o)
1462 
1463 _object_types.append("XYZRGeometry")
1464 
1465 
1466 def _object_cast_to_XYZRGeometry(o):
1467  """_object_cast_to_XYZRGeometry(Object o) -> XYZRGeometry"""
1468  return _IMP_core._object_cast_to_XYZRGeometry(o)
1469 
1470 _object_types.append("XYZRsGeometry")
1471 
1472 
1473 def _object_cast_to_XYZRsGeometry(o):
1474  """_object_cast_to_XYZRsGeometry(Object o) -> XYZRsGeometry"""
1475  return _IMP_core._object_cast_to_XYZRsGeometry(o)
1476 
1477 _object_types.append("XYZDerivativeGeometry")
1478 
1479 
1480 def _object_cast_to_XYZDerivativeGeometry(o):
1481  """_object_cast_to_XYZDerivativeGeometry(Object o) -> XYZDerivativeGeometry"""
1482  return _IMP_core._object_cast_to_XYZDerivativeGeometry(o)
1483 
1484 _object_types.append("XYZDerivativesGeometry")
1485 
1486 
1487 def _object_cast_to_XYZDerivativesGeometry(o):
1488  """_object_cast_to_XYZDerivativesGeometry(Object o) -> XYZDerivativesGeometry"""
1489  return _IMP_core._object_cast_to_XYZDerivativesGeometry(o)
1490 
1491 _object_types.append("RigidBodyDerivativeGeometry")
1492 
1493 
1494 def _object_cast_to_RigidBodyDerivativeGeometry(o):
1495  """_object_cast_to_RigidBodyDerivativeGeometry(Object o) -> RigidBodyDerivativeGeometry"""
1496  return _IMP_core._object_cast_to_RigidBodyDerivativeGeometry(o)
1497 
1498 _object_types.append("RigidBodyDerivativesGeometry")
1499 
1500 
1501 def _object_cast_to_RigidBodyDerivativesGeometry(o):
1502  """_object_cast_to_RigidBodyDerivativesGeometry(Object o) -> RigidBodyDerivativesGeometry"""
1503  return _IMP_core._object_cast_to_RigidBodyDerivativesGeometry(o)
1504 
1505 _object_types.append("RigidBodyHierarchyGeometry")
1506 
1507 
1508 def _object_cast_to_RigidBodyHierarchyGeometry(o):
1509  """_object_cast_to_RigidBodyHierarchyGeometry(Object o) -> RigidBodyHierarchyGeometry"""
1510  return _IMP_core._object_cast_to_RigidBodyHierarchyGeometry(o)
1511 
1512 _object_types.append("RigidBodyFrameGeometry")
1513 
1514 
1515 def _object_cast_to_RigidBodyFrameGeometry(o):
1516  """_object_cast_to_RigidBodyFrameGeometry(Object o) -> RigidBodyFrameGeometry"""
1517  return _IMP_core._object_cast_to_RigidBodyFrameGeometry(o)
1518 
1519 _object_types.append("RigidBodyFramesGeometry")
1520 
1521 
1522 def _object_cast_to_RigidBodyFramesGeometry(o):
1523  """_object_cast_to_RigidBodyFramesGeometry(Object o) -> RigidBodyFramesGeometry"""
1524  return _IMP_core._object_cast_to_RigidBodyFramesGeometry(o)
1525 
1526 _object_types.append("RigidBodyTorque")
1527 
1528 
1529 def _object_cast_to_RigidBodyTorque(o):
1530  """_object_cast_to_RigidBodyTorque(Object o) -> RigidBodyTorque"""
1531  return _IMP_core._object_cast_to_RigidBodyTorque(o)
1532 
1533 _object_types.append("EdgePairGeometry")
1534 
1535 
1536 def _object_cast_to_EdgePairGeometry(o):
1537  """_object_cast_to_EdgePairGeometry(Object o) -> EdgePairGeometry"""
1538  return _IMP_core._object_cast_to_EdgePairGeometry(o)
1539 
1540 _object_types.append("EdgePairsGeometry")
1541 
1542 
1543 def _object_cast_to_EdgePairsGeometry(o):
1544  """_object_cast_to_EdgePairsGeometry(Object o) -> EdgePairsGeometry"""
1545  return _IMP_core._object_cast_to_EdgePairsGeometry(o)
1546 
1547 _object_types.append("SurfaceGeometry")
1548 
1549 
1550 def _object_cast_to_SurfaceGeometry(o):
1551  """_object_cast_to_SurfaceGeometry(Object o) -> SurfaceGeometry"""
1552  return _IMP_core._object_cast_to_SurfaceGeometry(o)
1553 
1554 _object_types.append("SurfaceGeometryConstraint")
1555 
1556 
1557 def _object_cast_to_SurfaceGeometryConstraint(o):
1558  """_object_cast_to_SurfaceGeometryConstraint(Object o) -> SurfaceGeometryConstraint"""
1559  return _IMP_core._object_cast_to_SurfaceGeometryConstraint(o)
1560 
1561 _object_types.append("AttributeSingletonPredicate")
1562 
1563 
1564 def _object_cast_to_AttributeSingletonPredicate(o):
1565  """_object_cast_to_AttributeSingletonPredicate(Object o) -> AttributeSingletonPredicate"""
1566  return _IMP_core._object_cast_to_AttributeSingletonPredicate(o)
1567 
1568 _object_types.append("InBoundingBox3DSingletonPredicate")
1569 
1570 
1571 def _object_cast_to_InBoundingBox3DSingletonPredicate(o):
1572  """_object_cast_to_InBoundingBox3DSingletonPredicate(Object o) -> InBoundingBox3DSingletonPredicate"""
1573  return _IMP_core._object_cast_to_InBoundingBox3DSingletonPredicate(o)
1574 
1575 _object_types.append("IsCollisionPairPredicate")
1576 
1577 
1578 def _object_cast_to_IsCollisionPairPredicate(o):
1579  """_object_cast_to_IsCollisionPairPredicate(Object o) -> IsCollisionPairPredicate"""
1580  return _IMP_core._object_cast_to_IsCollisionPairPredicate(o)
1581 
1582 BinormalTermList=list
1583 _plural_types.append("BinormalTermList")
1584 _value_types.append("BinormalTerm")
1585 
1586 
1587 _object_types.append("MultipleBinormalRestraint")
1588 
1589 
1590 def _object_cast_to_MultipleBinormalRestraint(o):
1591  """_object_cast_to_MultipleBinormalRestraint(Object o) -> MultipleBinormalRestraint"""
1592  return _IMP_core._object_cast_to_MultipleBinormalRestraint(o)
1593 class ClosePairsFinder(IMP._ParticleInputs, IMP.Object):
1594  """Proxy of C++ IMP::core::ClosePairsFinder class."""
1595 
1596  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1597 
1598  def __init__(self, *args, **kwargs):
1599  raise AttributeError("No constructor defined - class is abstract")
1600  __swig_destroy__ = _IMP_core.delete_ClosePairsFinder
1601  __del__ = lambda self: None
1602 
1603  def get_close_pairs(self, *args):
1604  """
1605  get_close_pairs(ClosePairsFinder self, Model m, IMP::ParticleIndexes const & pc) -> IMP::ParticleIndexPairs
1606  get_close_pairs(ClosePairsFinder self, Model m, IMP::ParticleIndexes const & pca, IMP::ParticleIndexes const & pcb) -> IMP::ParticleIndexPairs
1607  get_close_pairs(ClosePairsFinder self, IMP::algebra::BoundingBox3Ds const & bbs) -> IMP::IntPairs
1608  get_close_pairs(ClosePairsFinder self, IMP::algebra::BoundingBox3Ds const & bas, IMP::algebra::BoundingBox3Ds const & bbs) -> IMP::IntPairs
1609  """
1610  return _IMP_core.ClosePairsFinder_get_close_pairs(self, *args)
1611 
1612 
1613  def set_distance(self, d):
1614  """set_distance(ClosePairsFinder self, double d)"""
1615  return _IMP_core.ClosePairsFinder_set_distance(self, d)
1616 
1617 
1618  def get_distance(self):
1619  """get_distance(ClosePairsFinder self) -> double"""
1620  return _IMP_core.ClosePairsFinder_get_distance(self)
1621 
1622 
1623  def remove_pair_filter(self, d):
1624  """remove_pair_filter(ClosePairsFinder self, PairPredicate d)"""
1625  return _IMP_core.ClosePairsFinder_remove_pair_filter(self, d)
1626 
1627 
1628  def remove_pair_filters(self, d):
1629  """remove_pair_filters(ClosePairsFinder self, IMP::PairPredicates const & d)"""
1630  return _IMP_core.ClosePairsFinder_remove_pair_filters(self, d)
1631 
1632 
1633  def set_pair_filters(self, ps):
1634  """set_pair_filters(ClosePairsFinder self, IMP::PairPredicates const & ps)"""
1635  return _IMP_core.ClosePairsFinder_set_pair_filters(self, ps)
1636 
1637 
1638  def set_pair_filters_order(self, objs):
1639  """set_pair_filters_order(ClosePairsFinder self, IMP::PairPredicates const & objs)"""
1640  return _IMP_core.ClosePairsFinder_set_pair_filters_order(self, objs)
1641 
1642 
1643  def add_pair_filter(self, obj):
1644  """add_pair_filter(ClosePairsFinder self, PairPredicate obj) -> unsigned int"""
1645  return _IMP_core.ClosePairsFinder_add_pair_filter(self, obj)
1646 
1647 
1648  def add_pair_filters(self, objs):
1649  """add_pair_filters(ClosePairsFinder self, IMP::PairPredicates const & objs)"""
1650  return _IMP_core.ClosePairsFinder_add_pair_filters(self, objs)
1651 
1652 
1653  def clear_pair_filters(self):
1654  """clear_pair_filters(ClosePairsFinder self)"""
1655  return _IMP_core.ClosePairsFinder_clear_pair_filters(self)
1656 
1657 
1658  def get_number_of_pair_filters(self):
1659  """get_number_of_pair_filters(ClosePairsFinder self) -> unsigned int"""
1660  return _IMP_core.ClosePairsFinder_get_number_of_pair_filters(self)
1661 
1662 
1663  def get_has_pair_filters(self):
1664  """get_has_pair_filters(ClosePairsFinder self) -> bool"""
1665  return _IMP_core.ClosePairsFinder_get_has_pair_filters(self)
1666 
1667 
1668  def get_pair_filter(self, i):
1669  """get_pair_filter(ClosePairsFinder self, unsigned int i) -> PairPredicate"""
1670  return _IMP_core.ClosePairsFinder_get_pair_filter(self, i)
1671 
1672 
1673  def get_pair_filters(self):
1674  """get_pair_filters(ClosePairsFinder self) -> IMP::PairPredicates"""
1675  return _IMP_core.ClosePairsFinder_get_pair_filters(self)
1676 
1677 
1678  def reserve_pair_filters(self, sz):
1679  """reserve_pair_filters(ClosePairsFinder self, unsigned int sz)"""
1680  return _IMP_core.ClosePairsFinder_reserve_pair_filters(self, sz)
1681 
1682 
1683  def __str__(self):
1684  """__str__(ClosePairsFinder self) -> std::string"""
1685  return _IMP_core.ClosePairsFinder___str__(self)
1686 
1687 
1688  def __repr__(self):
1689  """__repr__(ClosePairsFinder self) -> std::string"""
1690  return _IMP_core.ClosePairsFinder___repr__(self)
1691 
1692 
1693  @staticmethod
1694  def get_from(o):
1695  return _object_cast_to_ClosePairsFinder(o)
1696 
1697 ClosePairsFinder_swigregister = _IMP_core.ClosePairsFinder_swigregister
1698 ClosePairsFinder_swigregister(ClosePairsFinder)
1699 
1700 class MonteCarloMoverResult(IMP._Value):
1701  """Proxy of C++ IMP::core::MonteCarloMoverResult class."""
1702 
1703  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1704 
1705  def __init__(self, *args):
1706  """
1707  __init__(IMP::core::MonteCarloMoverResult self, IMP::ParticleIndexes i0, double i1) -> MonteCarloMoverResult
1708  __init__(IMP::core::MonteCarloMoverResult self, IMP::ParticleIndexes i0) -> MonteCarloMoverResult
1709  __init__(IMP::core::MonteCarloMoverResult self) -> MonteCarloMoverResult
1710  """
1711  this = _IMP_core.new_MonteCarloMoverResult(*args)
1712  try:
1713  self.this.append(this)
1714  except __builtin__.Exception:
1715  self.this = this
1716 
1717  def __hash__(self):
1718  """__hash__(MonteCarloMoverResult self) -> std::size_t"""
1719  return _IMP_core.MonteCarloMoverResult___hash__(self)
1720 
1721 
1722  def show(self, *args):
1723  """
1724  show(MonteCarloMoverResult self, _ostream out)
1725  show(MonteCarloMoverResult self)
1726  """
1727  return _IMP_core.MonteCarloMoverResult_show(self, *args)
1728 
1729 
1730  def __cmp__(self, o):
1731  """__cmp__(MonteCarloMoverResult self, MonteCarloMoverResult o) -> int"""
1732  return _IMP_core.MonteCarloMoverResult___cmp__(self, o)
1733 
1734 
1735  def __eq__(self, o):
1736  """__eq__(MonteCarloMoverResult self, MonteCarloMoverResult o) -> bool"""
1737  return _IMP_core.MonteCarloMoverResult___eq__(self, o)
1738 
1739 
1740  def __ne__(self, o):
1741  """__ne__(MonteCarloMoverResult self, MonteCarloMoverResult o) -> bool"""
1742  return _IMP_core.MonteCarloMoverResult___ne__(self, o)
1743 
1744 
1745  def __lt__(self, o):
1746  """__lt__(MonteCarloMoverResult self, MonteCarloMoverResult o) -> bool"""
1747  return _IMP_core.MonteCarloMoverResult___lt__(self, o)
1748 
1749 
1750  def __gt__(self, o):
1751  """__gt__(MonteCarloMoverResult self, MonteCarloMoverResult o) -> bool"""
1752  return _IMP_core.MonteCarloMoverResult___gt__(self, o)
1753 
1754 
1755  def __ge__(self, o):
1756  """__ge__(MonteCarloMoverResult self, MonteCarloMoverResult o) -> bool"""
1757  return _IMP_core.MonteCarloMoverResult___ge__(self, o)
1758 
1759 
1760  def __le__(self, o):
1761  """__le__(MonteCarloMoverResult self, MonteCarloMoverResult o) -> bool"""
1762  return _IMP_core.MonteCarloMoverResult___le__(self, o)
1763 
1764 
1765  def get_moved_particles(self):
1766  """get_moved_particles(MonteCarloMoverResult self) -> IMP::ParticleIndexes const &"""
1767  return _IMP_core.MonteCarloMoverResult_get_moved_particles(self)
1768 
1769 
1770  def set_moved_particles(self, v):
1771  """set_moved_particles(MonteCarloMoverResult self, IMP::ParticleIndexes const & v)"""
1772  return _IMP_core.MonteCarloMoverResult_set_moved_particles(self, v)
1773 
1774 
1775  def get_proposal_ratio(self):
1776  """get_proposal_ratio(MonteCarloMoverResult self) -> double const &"""
1777  return _IMP_core.MonteCarloMoverResult_get_proposal_ratio(self)
1778 
1779 
1780  def set_proposal_ratio(self, v):
1781  """set_proposal_ratio(MonteCarloMoverResult self, double const & v)"""
1782  return _IMP_core.MonteCarloMoverResult_set_proposal_ratio(self, v)
1783 
1784 
1785  def __str__(self):
1786  """__str__(MonteCarloMoverResult self) -> std::string"""
1787  return _IMP_core.MonteCarloMoverResult___str__(self)
1788 
1789 
1790  def __repr__(self):
1791  """__repr__(MonteCarloMoverResult self) -> std::string"""
1792  return _IMP_core.MonteCarloMoverResult___repr__(self)
1793 
1794  __swig_destroy__ = _IMP_core.delete_MonteCarloMoverResult
1795  __del__ = lambda self: None
1796 MonteCarloMoverResult_swigregister = _IMP_core.MonteCarloMoverResult_swigregister
1797 MonteCarloMoverResult_swigregister(MonteCarloMoverResult)
1798 
1799 class MonteCarloMover(IMP.ModelObject):
1800  """Proxy of C++ IMP::core::MonteCarloMover class."""
1801 
1802  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1803 
1804  def __init__(self, m, name):
1805  """__init__(IMP::core::MonteCarloMover self, Model m, std::string name) -> MonteCarloMover"""
1806  if self.__class__ == MonteCarloMover:
1807  _self = None
1808  else:
1809  _self = self
1810  this = _IMP_core.new_MonteCarloMover(_self, m, name)
1811  try:
1812  self.this.append(this)
1813  except __builtin__.Exception:
1814  self.this = this
1815 
1816  if self.__class__ != MonteCarloMover:
1817  _director_objects.register(self)
1818 
1819 
1820 
1821 
1822  def propose(self):
1823  """propose(MonteCarloMover self) -> MonteCarloMoverResult"""
1824  return _IMP_core.MonteCarloMover_propose(self)
1825 
1826 
1827  def reject(self):
1828  """reject(MonteCarloMover self)"""
1829  return _IMP_core.MonteCarloMover_reject(self)
1830 
1831 
1832  def accept(self):
1833  """accept(MonteCarloMover self)"""
1834  return _IMP_core.MonteCarloMover_accept(self)
1835 
1836 
1837  def get_number_of_proposed(self):
1838  """get_number_of_proposed(MonteCarloMover self) -> unsigned int"""
1839  return _IMP_core.MonteCarloMover_get_number_of_proposed(self)
1840 
1841 
1842  def get_number_of_accepted(self):
1843  """get_number_of_accepted(MonteCarloMover self) -> unsigned int"""
1844  return _IMP_core.MonteCarloMover_get_number_of_accepted(self)
1845 
1846 
1847  def reset_statistics(self):
1848  """reset_statistics(MonteCarloMover self)"""
1849  return _IMP_core.MonteCarloMover_reset_statistics(self)
1850 
1851 
1852  def do_propose(self):
1853  """do_propose(MonteCarloMover self) -> MonteCarloMoverResult"""
1854  return _IMP_core.MonteCarloMover_do_propose(self)
1855 
1856 
1857  def do_reject(self):
1858  """do_reject(MonteCarloMover self)"""
1859  return _IMP_core.MonteCarloMover_do_reject(self)
1860 
1861 
1862  def do_accept(self):
1863  """do_accept(MonteCarloMover self)"""
1864  return _IMP_core.MonteCarloMover_do_accept(self)
1865 
1866 
1867  def do_get_outputs(self):
1868  """do_get_outputs(MonteCarloMover self) -> IMP::ModelObjectsTemp"""
1869  return _IMP_core.MonteCarloMover_do_get_outputs(self)
1870 
1871 
1872  def __str__(self):
1873  """__str__(MonteCarloMover self) -> std::string"""
1874  return _IMP_core.MonteCarloMover___str__(self)
1875 
1876 
1877  def __repr__(self):
1878  """__repr__(MonteCarloMover self) -> std::string"""
1879  return _IMP_core.MonteCarloMover___repr__(self)
1880 
1881 
1882  @staticmethod
1883  def get_from(o):
1884  return _object_cast_to_MonteCarloMover(o)
1885 
1886 
1887  def get_type_name(self):
1888  return self.__class__.__name__
1889  def do_show(self, out):
1890  pass
1891  def get_version_info(self):
1892  if"IMP::core" == "IMP":
1893  return VersionInfo(self.__module__,
1894  __import__(self.__module__).get_module_version())
1895  else:
1896  return IMP.VersionInfo(self.__module__,
1897  __import__(self.__module__).get_module_version())
1898  @staticmethod
1899  def get_from(o):
1900  return _object_cast_to_MonteCarloMover(o)
1901 
1902  __swig_destroy__ = _IMP_core.delete_MonteCarloMover
1903  __del__ = lambda self: None
1904  def __disown__(self):
1905  self.this.disown()
1906  _IMP_core.disown_MonteCarloMover(self)
1907  return weakref_proxy(self)
1908 
1909  def do_destroy(self):
1910  """do_destroy(MonteCarloMover self)"""
1911  return _IMP_core.MonteCarloMover_do_destroy(self)
1912 
1913 
1914  def handle_set_has_required_score_states(self, arg0):
1915  """handle_set_has_required_score_states(MonteCarloMover self, bool arg0)"""
1916  return _IMP_core.MonteCarloMover_handle_set_has_required_score_states(self, arg0)
1917 
1918 
1919  def do_get_inputs(self):
1920  """do_get_inputs(MonteCarloMover self) -> IMP::ModelObjectsTemp"""
1921  return _IMP_core.MonteCarloMover_do_get_inputs(self)
1922 
1923 
1924  def do_get_interactions(self):
1925  """do_get_interactions(MonteCarloMover self) -> IMP::ModelObjectsTemps"""
1926  return _IMP_core.MonteCarloMover_do_get_interactions(self)
1927 
1928 MonteCarloMover_swigregister = _IMP_core.MonteCarloMover_swigregister
1929 MonteCarloMover_swigregister(MonteCarloMover)
1930 
1931 class XYZ(IMP.Decorator):
1932  """Proxy of C++ IMP::core::XYZ class."""
1933 
1934  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1935 
1936  def get_coordinate_key(i):
1937  """get_coordinate_key(unsigned int i) -> FloatKey"""
1938  return _IMP_core.XYZ_get_coordinate_key(i)
1939 
1940  get_coordinate_key = staticmethod(get_coordinate_key)
1941 
1942  def __init__(self, *args):
1943  """
1944  __init__(IMP::core::XYZ self) -> XYZ
1945  __init__(IMP::core::XYZ self, Model m, ParticleIndex id) -> XYZ
1946  __init__(IMP::core::XYZ self, _ParticleAdaptor d) -> XYZ
1947  """
1948  this = _IMP_core.new_XYZ(*args)
1949  try:
1950  self.this.append(this)
1951  except __builtin__.Exception:
1952  self.this = this
1953 
1954  def show(self, *args):
1955  """
1956  show(XYZ self, _ostream out)
1957  show(XYZ self)
1958  """
1959  return _IMP_core.XYZ_show(self, *args)
1960 
1961 
1962  def setup_particle(*args):
1963  """
1964  setup_particle(Model m, ParticleIndex pi) -> XYZ
1965  setup_particle(_ParticleAdaptor decorator) -> XYZ
1966  setup_particle(Model m, ParticleIndex pi, Vector3D v) -> XYZ
1967  setup_particle(_ParticleAdaptor decorator, Vector3D v) -> XYZ
1968  """
1969  return _IMP_core.XYZ_setup_particle(*args)
1970 
1971  setup_particle = staticmethod(setup_particle)
1972 
1973  def get_x(self):
1974  """get_x(XYZ self) -> IMP::Float"""
1975  return _IMP_core.XYZ_get_x(self)
1976 
1977 
1978  def set_x(self, t):
1979  """set_x(XYZ self, IMP::Float t)"""
1980  return _IMP_core.XYZ_set_x(self, t)
1981 
1982 
1983  def get_y(self):
1984  """get_y(XYZ self) -> IMP::Float"""
1985  return _IMP_core.XYZ_get_y(self)
1986 
1987 
1988  def set_y(self, t):
1989  """set_y(XYZ self, IMP::Float t)"""
1990  return _IMP_core.XYZ_set_y(self, t)
1991 
1992 
1993  def get_z(self):
1994  """get_z(XYZ self) -> IMP::Float"""
1995  return _IMP_core.XYZ_get_z(self)
1996 
1997 
1998  def set_z(self, t):
1999  """set_z(XYZ self, IMP::Float t)"""
2000  return _IMP_core.XYZ_set_z(self, t)
2001 
2002 
2003  def set_coordinate(self, i, v):
2004  """set_coordinate(XYZ self, unsigned int i, IMP::Float v)"""
2005  return _IMP_core.XYZ_set_coordinate(self, i, v)
2006 
2007 
2008  def set_coordinates(self, v):
2009  """set_coordinates(XYZ self, Vector3D v)"""
2010  return _IMP_core.XYZ_set_coordinates(self, v)
2011 
2012 
2013  def get_coordinate(self, i):
2014  """get_coordinate(XYZ self, int i) -> IMP::Float"""
2015  return _IMP_core.XYZ_get_coordinate(self, i)
2016 
2017 
2018  def add_to_derivatives(self, v, d):
2019  """add_to_derivatives(XYZ self, Vector3D v, DerivativeAccumulator d)"""
2020  return _IMP_core.XYZ_add_to_derivatives(self, v, d)
2021 
2022 
2023  def get_coordinates_are_optimized(self):
2024  """get_coordinates_are_optimized(XYZ self) -> bool"""
2025  return _IMP_core.XYZ_get_coordinates_are_optimized(self)
2026 
2027 
2028  def set_coordinates_are_optimized(self, tf):
2029  """set_coordinates_are_optimized(XYZ self, bool tf)"""
2030  return _IMP_core.XYZ_set_coordinates_are_optimized(self, tf)
2031 
2032 
2033  def get_vector_to(self, b):
2034  """get_vector_to(XYZ self, XYZ b) -> Vector3D"""
2035  return _IMP_core.XYZ_get_vector_to(self, b)
2036 
2037 
2038  def get_coordinates(self):
2039  """get_coordinates(XYZ self) -> Vector3D"""
2040  return _IMP_core.XYZ_get_coordinates(self)
2041 
2042 
2043  def get_derivatives(self):
2044  """get_derivatives(XYZ self) -> Vector3D"""
2045  return _IMP_core.XYZ_get_derivatives(self)
2046 
2047 
2048  def get_is_setup(*args):
2049  """
2050  get_is_setup(_ParticleAdaptor p) -> bool
2051  get_is_setup(Model m, ParticleIndex pi) -> bool
2052  """
2053  return _IMP_core.XYZ_get_is_setup(*args)
2054 
2055  get_is_setup = staticmethod(get_is_setup)
2056 
2057  def get_xyz_keys():
2058  """get_xyz_keys() -> IMP::FloatKeys const &"""
2059  return _IMP_core.XYZ_get_xyz_keys()
2060 
2061  get_xyz_keys = staticmethod(get_xyz_keys)
2062 
2063  def add_attribute(self, *args):
2064  """
2065  add_attribute(XYZ self, FloatKey k, IMP::Float v, bool opt)
2066  add_attribute(XYZ self, FloatKey a0, IMP::Float a1)
2067  add_attribute(XYZ self, IntKey a0, IMP::Int a1)
2068  add_attribute(XYZ self, StringKey a0, IMP::String a1)
2069  add_attribute(XYZ self, ParticleIndexKey a0, Particle a1)
2070  add_attribute(XYZ self, ObjectKey a0, Object a1)
2071  """
2072  return _IMP_core.XYZ_add_attribute(self, *args)
2073 
2074 
2075  def get_value(self, *args):
2076  """
2077  get_value(XYZ self, FloatKey a0) -> IMP::Float
2078  get_value(XYZ self, IntKey a0) -> IMP::Int
2079  get_value(XYZ self, StringKey a0) -> IMP::String
2080  get_value(XYZ self, ParticleIndexKey a0) -> Particle
2081  get_value(XYZ self, ObjectKey a0) -> Object
2082  """
2083  return _IMP_core.XYZ_get_value(self, *args)
2084 
2085 
2086  def set_value(self, *args):
2087  """
2088  set_value(XYZ self, FloatKey a0, IMP::Float a1)
2089  set_value(XYZ self, IntKey a0, IMP::Int a1)
2090  set_value(XYZ self, StringKey a0, IMP::String a1)
2091  set_value(XYZ self, ParticleIndexKey a0, Particle a1)
2092  set_value(XYZ self, ObjectKey a0, Object a1)
2093  """
2094  return _IMP_core.XYZ_set_value(self, *args)
2095 
2096 
2097  def remove_attribute(self, *args):
2098  """
2099  remove_attribute(XYZ self, FloatKey a0)
2100  remove_attribute(XYZ self, IntKey a0)
2101  remove_attribute(XYZ self, StringKey a0)
2102  remove_attribute(XYZ self, ParticleIndexKey a0)
2103  remove_attribute(XYZ self, ObjectKey a0)
2104  """
2105  return _IMP_core.XYZ_remove_attribute(self, *args)
2106 
2107 
2108  def has_attribute(self, *args):
2109  """
2110  has_attribute(XYZ self, FloatKey a0) -> bool
2111  has_attribute(XYZ self, IntKey a0) -> bool
2112  has_attribute(XYZ self, StringKey a0) -> bool
2113  has_attribute(XYZ self, ParticleIndexKey a0) -> bool
2114  has_attribute(XYZ self, ObjectKey a0) -> bool
2115  """
2116  return _IMP_core.XYZ_has_attribute(self, *args)
2117 
2118 
2119  def get_derivative(self, *args):
2120  """
2121  get_derivative(XYZ self, int i) -> IMP::Float
2122  get_derivative(XYZ self, FloatKey a0) -> double
2123  """
2124  return _IMP_core.XYZ_get_derivative(self, *args)
2125 
2126 
2127  def get_name(self):
2128  """get_name(XYZ self) -> std::string"""
2129  return _IMP_core.XYZ_get_name(self)
2130 
2131 
2132  def clear_caches(self):
2133  """clear_caches(XYZ self)"""
2134  return _IMP_core.XYZ_clear_caches(self)
2135 
2136 
2137  def set_name(self, a0):
2138  """set_name(XYZ self, std::string a0)"""
2139  return _IMP_core.XYZ_set_name(self, a0)
2140 
2141 
2142  def set_check_level(self, a0):
2143  """set_check_level(XYZ self, IMP::CheckLevel a0)"""
2144  return _IMP_core.XYZ_set_check_level(self, a0)
2145 
2146 
2147  def add_to_derivative(self, *args):
2148  """
2149  add_to_derivative(XYZ self, int i, IMP::Float v, DerivativeAccumulator d)
2150  add_to_derivative(XYZ self, FloatKey a0, double a1, DerivativeAccumulator a2)
2151  """
2152  return _IMP_core.XYZ_add_to_derivative(self, *args)
2153 
2154 
2155  def set_is_optimized(self, a0, a1):
2156  """set_is_optimized(XYZ self, FloatKey a0, bool a1)"""
2157  return _IMP_core.XYZ_set_is_optimized(self, a0, a1)
2158 
2159 
2160  def get_is_optimized(self, a0):
2161  """get_is_optimized(XYZ self, FloatKey a0) -> bool"""
2162  return _IMP_core.XYZ_get_is_optimized(self, a0)
2163 
2164 
2165  def get_check_level(self):
2166  """get_check_level(XYZ self) -> IMP::CheckLevel"""
2167  return _IMP_core.XYZ_get_check_level(self)
2168 
2169 
2170  def __eq__(self, *args):
2171  """
2172  __eq__(XYZ self, XYZ o) -> bool
2173  __eq__(XYZ self, Particle d) -> bool
2174  """
2175  return _IMP_core.XYZ___eq__(self, *args)
2176 
2177 
2178  def __ne__(self, *args):
2179  """
2180  __ne__(XYZ self, XYZ o) -> bool
2181  __ne__(XYZ self, Particle d) -> bool
2182  """
2183  return _IMP_core.XYZ___ne__(self, *args)
2184 
2185 
2186  def __le__(self, *args):
2187  """
2188  __le__(XYZ self, XYZ o) -> bool
2189  __le__(XYZ self, Particle d) -> bool
2190  """
2191  return _IMP_core.XYZ___le__(self, *args)
2192 
2193 
2194  def __lt__(self, *args):
2195  """
2196  __lt__(XYZ self, XYZ o) -> bool
2197  __lt__(XYZ self, Particle d) -> bool
2198  """
2199  return _IMP_core.XYZ___lt__(self, *args)
2200 
2201 
2202  def __ge__(self, *args):
2203  """
2204  __ge__(XYZ self, XYZ o) -> bool
2205  __ge__(XYZ self, Particle d) -> bool
2206  """
2207  return _IMP_core.XYZ___ge__(self, *args)
2208 
2209 
2210  def __gt__(self, *args):
2211  """
2212  __gt__(XYZ self, XYZ o) -> bool
2213  __gt__(XYZ self, Particle d) -> bool
2214  """
2215  return _IMP_core.XYZ___gt__(self, *args)
2216 
2217 
2218  def __hash__(self):
2219  """__hash__(XYZ self) -> std::size_t"""
2220  return _IMP_core.XYZ___hash__(self)
2221 
2222 
2223  def __str__(self):
2224  """__str__(XYZ self) -> std::string"""
2225  return _IMP_core.XYZ___str__(self)
2226 
2227 
2228  def __repr__(self):
2229  """__repr__(XYZ self) -> std::string"""
2230  return _IMP_core.XYZ___repr__(self)
2231 
2232  __swig_destroy__ = _IMP_core.delete_XYZ
2233  __del__ = lambda self: None
2234 XYZ_swigregister = _IMP_core.XYZ_swigregister
2235 XYZ_swigregister(XYZ)
2236 
2237 def XYZ_get_coordinate_key(i):
2238  """XYZ_get_coordinate_key(unsigned int i) -> FloatKey"""
2239  return _IMP_core.XYZ_get_coordinate_key(i)
2240 
2241 def XYZ_setup_particle(*args):
2242  """
2243  setup_particle(Model m, ParticleIndex pi) -> XYZ
2244  setup_particle(_ParticleAdaptor decorator) -> XYZ
2245  setup_particle(Model m, ParticleIndex pi, Vector3D v) -> XYZ
2246  XYZ_setup_particle(_ParticleAdaptor decorator, Vector3D v) -> XYZ
2247  """
2248  return _IMP_core.XYZ_setup_particle(*args)
2249 
2250 def XYZ_get_is_setup(*args):
2251  """
2252  get_is_setup(_ParticleAdaptor p) -> bool
2253  XYZ_get_is_setup(Model m, ParticleIndex pi) -> bool
2254  """
2255  return _IMP_core.XYZ_get_is_setup(*args)
2256 
2257 def XYZ_get_xyz_keys():
2258  """XYZ_get_xyz_keys() -> IMP::FloatKeys const &"""
2259  return _IMP_core.XYZ_get_xyz_keys()
2260 
2261 
2262 def set_vector_geometry(d, v):
2263  """set_vector_geometry(XYZ d, Vector3D v)"""
2264  return _IMP_core.set_vector_geometry(d, v)
2265 
2266 def get_vector_geometry(d):
2267  """get_vector_geometry(XYZ d) -> Vector3D"""
2268  return _IMP_core.get_vector_geometry(d)
2269 
2270 def get_dihedral(a, b, c, d):
2271  """get_dihedral(XYZ a, XYZ b, XYZ c, XYZ d) -> double"""
2272  return _IMP_core.get_dihedral(a, b, c, d)
2273 class XYZR(XYZ):
2274  """Proxy of C++ IMP::core::XYZR class."""
2275 
2276  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2277 
2278  def __init__(self, *args):
2279  """
2280  __init__(IMP::core::XYZR self) -> XYZR
2281  __init__(IMP::core::XYZR self, Model m, ParticleIndex id) -> XYZR
2282  __init__(IMP::core::XYZR self, _ParticleAdaptor d) -> XYZR
2283  """
2284  this = _IMP_core.new_XYZR(*args)
2285  try:
2286  self.this.append(this)
2287  except __builtin__.Exception:
2288  self.this = this
2289 
2290  def show(self, *args):
2291  """
2292  show(XYZR self, _ostream out)
2293  show(XYZR self)
2294  """
2295  return _IMP_core.XYZR_show(self, *args)
2296 
2297 
2298  def setup_particle(*args):
2299  """
2300  setup_particle(Model m, ParticleIndex pi) -> XYZR
2301  setup_particle(_ParticleAdaptor decorator) -> XYZR
2302  setup_particle(Model m, ParticleIndex pi, IMP::Float radius) -> XYZR
2303  setup_particle(_ParticleAdaptor decorator, IMP::Float radius) -> XYZR
2304  setup_particle(Model m, ParticleIndex pi, Sphere3D ball) -> XYZR
2305  setup_particle(_ParticleAdaptor decorator, Sphere3D ball) -> XYZR
2306  """
2307  return _IMP_core.XYZR_setup_particle(*args)
2308 
2309  setup_particle = staticmethod(setup_particle)
2310 
2311  def get_is_setup(*args):
2312  """
2313  get_is_setup(_ParticleAdaptor p) -> bool
2314  get_is_setup(Model m, ParticleIndex pi) -> bool
2315  """
2316  return _IMP_core.XYZR_get_is_setup(*args)
2317 
2318  get_is_setup = staticmethod(get_is_setup)
2319 
2320  def get_radius(self):
2321  """get_radius(XYZR self) -> double"""
2322  return _IMP_core.XYZR_get_radius(self)
2323 
2324 
2325  def set_radius(self, r):
2326  """set_radius(XYZR self, double r)"""
2327  return _IMP_core.XYZR_set_radius(self, r)
2328 
2329 
2330  def get_sphere(self):
2331  """get_sphere(XYZR self) -> Sphere3D"""
2332  return _IMP_core.XYZR_get_sphere(self)
2333 
2334 
2335  def set_sphere(self, s):
2336  """set_sphere(XYZR self, Sphere3D s)"""
2337  return _IMP_core.XYZR_set_sphere(self, s)
2338 
2339 
2340  def get_radius_key():
2341  """get_radius_key() -> FloatKey"""
2342  return _IMP_core.XYZR_get_radius_key()
2343 
2344  get_radius_key = staticmethod(get_radius_key)
2345 
2346  def add_to_radius_derivative(self, v, d):
2347  """add_to_radius_derivative(XYZR self, double v, DerivativeAccumulator d)"""
2348  return _IMP_core.XYZR_add_to_radius_derivative(self, v, d)
2349 
2350 
2351  def add_attribute(self, *args):
2352  """
2353  add_attribute(XYZR self, FloatKey k, IMP::Float v, bool opt)
2354  add_attribute(XYZR self, FloatKey a0, IMP::Float a1)
2355  add_attribute(XYZR self, IntKey a0, IMP::Int a1)
2356  add_attribute(XYZR self, StringKey a0, IMP::String a1)
2357  add_attribute(XYZR self, ParticleIndexKey a0, Particle a1)
2358  add_attribute(XYZR self, ObjectKey a0, Object a1)
2359  """
2360  return _IMP_core.XYZR_add_attribute(self, *args)
2361 
2362 
2363  def get_value(self, *args):
2364  """
2365  get_value(XYZR self, FloatKey a0) -> IMP::Float
2366  get_value(XYZR self, IntKey a0) -> IMP::Int
2367  get_value(XYZR self, StringKey a0) -> IMP::String
2368  get_value(XYZR self, ParticleIndexKey a0) -> Particle
2369  get_value(XYZR self, ObjectKey a0) -> Object
2370  """
2371  return _IMP_core.XYZR_get_value(self, *args)
2372 
2373 
2374  def set_value(self, *args):
2375  """
2376  set_value(XYZR self, FloatKey a0, IMP::Float a1)
2377  set_value(XYZR self, IntKey a0, IMP::Int a1)
2378  set_value(XYZR self, StringKey a0, IMP::String a1)
2379  set_value(XYZR self, ParticleIndexKey a0, Particle a1)
2380  set_value(XYZR self, ObjectKey a0, Object a1)
2381  """
2382  return _IMP_core.XYZR_set_value(self, *args)
2383 
2384 
2385  def remove_attribute(self, *args):
2386  """
2387  remove_attribute(XYZR self, FloatKey a0)
2388  remove_attribute(XYZR self, IntKey a0)
2389  remove_attribute(XYZR self, StringKey a0)
2390  remove_attribute(XYZR self, ParticleIndexKey a0)
2391  remove_attribute(XYZR self, ObjectKey a0)
2392  """
2393  return _IMP_core.XYZR_remove_attribute(self, *args)
2394 
2395 
2396  def has_attribute(self, *args):
2397  """
2398  has_attribute(XYZR self, FloatKey a0) -> bool
2399  has_attribute(XYZR self, IntKey a0) -> bool
2400  has_attribute(XYZR self, StringKey a0) -> bool
2401  has_attribute(XYZR self, ParticleIndexKey a0) -> bool
2402  has_attribute(XYZR self, ObjectKey a0) -> bool
2403  """
2404  return _IMP_core.XYZR_has_attribute(self, *args)
2405 
2406 
2407  def get_derivative(self, a0):
2408  """get_derivative(XYZR self, FloatKey a0) -> double"""
2409  return _IMP_core.XYZR_get_derivative(self, a0)
2410 
2411 
2412  def get_name(self):
2413  """get_name(XYZR self) -> std::string"""
2414  return _IMP_core.XYZR_get_name(self)
2415 
2416 
2417  def clear_caches(self):
2418  """clear_caches(XYZR self)"""
2419  return _IMP_core.XYZR_clear_caches(self)
2420 
2421 
2422  def set_name(self, a0):
2423  """set_name(XYZR self, std::string a0)"""
2424  return _IMP_core.XYZR_set_name(self, a0)
2425 
2426 
2427  def set_check_level(self, a0):
2428  """set_check_level(XYZR self, IMP::CheckLevel a0)"""
2429  return _IMP_core.XYZR_set_check_level(self, a0)
2430 
2431 
2432  def add_to_derivative(self, a0, a1, a2):
2433  """add_to_derivative(XYZR self, FloatKey a0, double a1, DerivativeAccumulator a2)"""
2434  return _IMP_core.XYZR_add_to_derivative(self, a0, a1, a2)
2435 
2436 
2437  def set_is_optimized(self, a0, a1):
2438  """set_is_optimized(XYZR self, FloatKey a0, bool a1)"""
2439  return _IMP_core.XYZR_set_is_optimized(self, a0, a1)
2440 
2441 
2442  def get_is_optimized(self, a0):
2443  """get_is_optimized(XYZR self, FloatKey a0) -> bool"""
2444  return _IMP_core.XYZR_get_is_optimized(self, a0)
2445 
2446 
2447  def get_check_level(self):
2448  """get_check_level(XYZR self) -> IMP::CheckLevel"""
2449  return _IMP_core.XYZR_get_check_level(self)
2450 
2451 
2452  def __eq__(self, *args):
2453  """
2454  __eq__(XYZR self, XYZR o) -> bool
2455  __eq__(XYZR self, Particle d) -> bool
2456  """
2457  return _IMP_core.XYZR___eq__(self, *args)
2458 
2459 
2460  def __ne__(self, *args):
2461  """
2462  __ne__(XYZR self, XYZR o) -> bool
2463  __ne__(XYZR self, Particle d) -> bool
2464  """
2465  return _IMP_core.XYZR___ne__(self, *args)
2466 
2467 
2468  def __le__(self, *args):
2469  """
2470  __le__(XYZR self, XYZR o) -> bool
2471  __le__(XYZR self, Particle d) -> bool
2472  """
2473  return _IMP_core.XYZR___le__(self, *args)
2474 
2475 
2476  def __lt__(self, *args):
2477  """
2478  __lt__(XYZR self, XYZR o) -> bool
2479  __lt__(XYZR self, Particle d) -> bool
2480  """
2481  return _IMP_core.XYZR___lt__(self, *args)
2482 
2483 
2484  def __ge__(self, *args):
2485  """
2486  __ge__(XYZR self, XYZR o) -> bool
2487  __ge__(XYZR self, Particle d) -> bool
2488  """
2489  return _IMP_core.XYZR___ge__(self, *args)
2490 
2491 
2492  def __gt__(self, *args):
2493  """
2494  __gt__(XYZR self, XYZR o) -> bool
2495  __gt__(XYZR self, Particle d) -> bool
2496  """
2497  return _IMP_core.XYZR___gt__(self, *args)
2498 
2499 
2500  def __hash__(self):
2501  """__hash__(XYZR self) -> std::size_t"""
2502  return _IMP_core.XYZR___hash__(self)
2503 
2504 
2505  def __str__(self):
2506  """__str__(XYZR self) -> std::string"""
2507  return _IMP_core.XYZR___str__(self)
2508 
2509 
2510  def __repr__(self):
2511  """__repr__(XYZR self) -> std::string"""
2512  return _IMP_core.XYZR___repr__(self)
2513 
2514  __swig_destroy__ = _IMP_core.delete_XYZR
2515  __del__ = lambda self: None
2516 XYZR_swigregister = _IMP_core.XYZR_swigregister
2517 XYZR_swigregister(XYZR)
2518 
2519 def XYZR_setup_particle(*args):
2520  """
2521  setup_particle(Model m, ParticleIndex pi) -> XYZR
2522  setup_particle(_ParticleAdaptor decorator) -> XYZR
2523  setup_particle(Model m, ParticleIndex pi, IMP::Float radius) -> XYZR
2524  setup_particle(_ParticleAdaptor decorator, IMP::Float radius) -> XYZR
2525  setup_particle(Model m, ParticleIndex pi, Sphere3D ball) -> XYZR
2526  XYZR_setup_particle(_ParticleAdaptor decorator, Sphere3D ball) -> XYZR
2527  """
2528  return _IMP_core.XYZR_setup_particle(*args)
2529 
2530 def XYZR_get_is_setup(*args):
2531  """
2532  get_is_setup(_ParticleAdaptor p) -> bool
2533  XYZR_get_is_setup(Model m, ParticleIndex pi) -> bool
2534  """
2535  return _IMP_core.XYZR_get_is_setup(*args)
2536 
2537 def XYZR_get_radius_key():
2538  """XYZR_get_radius_key() -> FloatKey"""
2539  return _IMP_core.XYZR_get_radius_key()
2540 
2541 
2542 def set_enclosing_sphere(b, v, slack=0):
2543  """
2544  set_enclosing_sphere(XYZR b, IMP::core::XYZs const & v, double slack=0)
2545  set_enclosing_sphere(XYZR b, IMP::core::XYZs const & v)
2546  """
2547  return _IMP_core.set_enclosing_sphere(b, v, slack)
2548 
2549 def set_enclosing_radius(b, v):
2550  """set_enclosing_radius(XYZR b, IMP::core::XYZs const & v)"""
2551  return _IMP_core.set_enclosing_radius(b, v)
2552 
2553 def get_enclosing_sphere(v):
2554  """get_enclosing_sphere(IMP::core::XYZs const & v) -> Sphere3D"""
2555  return _IMP_core.get_enclosing_sphere(v)
2556 
2557 def create_xyzr_particles(m, num, radius, box_side=10):
2558  """
2559  create_xyzr_particles(Model m, unsigned int num, IMP::Float radius, IMP::Float box_side=10) -> IMP::core::XYZRs
2560  create_xyzr_particles(Model m, unsigned int num, IMP::Float radius) -> IMP::core::XYZRs
2561  """
2562  return _IMP_core.create_xyzr_particles(m, num, radius, box_side)
2563 class XYZRGeometry(IMP.display.SingletonGeometry):
2564  """Proxy of C++ IMP::core::XYZRGeometry class."""
2565 
2566  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2567 
2568  def __init__(self, *args):
2569  """
2570  __init__(IMP::core::XYZRGeometry self, Particle p) -> XYZRGeometry
2571  __init__(IMP::core::XYZRGeometry self, XYZR d) -> XYZRGeometry
2572  """
2573  this = _IMP_core.new_XYZRGeometry(*args)
2574  try:
2575  self.this.append(this)
2576  except __builtin__.Exception:
2577  self.this = this
2578 
2579  def get_version_info(self):
2580  """get_version_info(XYZRGeometry self) -> VersionInfo"""
2581  return _IMP_core.XYZRGeometry_get_version_info(self)
2582 
2583 
2584  def __str__(self):
2585  """__str__(XYZRGeometry self) -> std::string"""
2586  return _IMP_core.XYZRGeometry___str__(self)
2587 
2588 
2589  def __repr__(self):
2590  """__repr__(XYZRGeometry self) -> std::string"""
2591  return _IMP_core.XYZRGeometry___repr__(self)
2592 
2593 
2594  @staticmethod
2595  def get_from(o):
2596  return _object_cast_to_XYZRGeometry(o)
2597 
2598 XYZRGeometry_swigregister = _IMP_core.XYZRGeometry_swigregister
2599 XYZRGeometry_swigregister(XYZRGeometry)
2600 
2601 class XYZRsGeometry(IMP.display.SingletonsGeometry):
2602  """Proxy of C++ IMP::core::XYZRsGeometry class."""
2603 
2604  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2605 
2606  def __init__(self, sc):
2607  """__init__(IMP::core::XYZRsGeometry self, SingletonContainer sc) -> XYZRsGeometry"""
2608  this = _IMP_core.new_XYZRsGeometry(sc)
2609  try:
2610  self.this.append(this)
2611  except __builtin__.Exception:
2612  self.this = this
2613 
2614  def get_version_info(self):
2615  """get_version_info(XYZRsGeometry self) -> VersionInfo"""
2616  return _IMP_core.XYZRsGeometry_get_version_info(self)
2617 
2618 
2619  def __str__(self):
2620  """__str__(XYZRsGeometry self) -> std::string"""
2621  return _IMP_core.XYZRsGeometry___str__(self)
2622 
2623 
2624  def __repr__(self):
2625  """__repr__(XYZRsGeometry self) -> std::string"""
2626  return _IMP_core.XYZRsGeometry___repr__(self)
2627 
2628 
2629  @staticmethod
2630  def get_from(o):
2631  return _object_cast_to_XYZRsGeometry(o)
2632 
2633 XYZRsGeometry_swigregister = _IMP_core.XYZRsGeometry_swigregister
2634 XYZRsGeometry_swigregister(XYZRsGeometry)
2635 
2636 class XYZDerivativeGeometry(IMP.display.SingletonGeometry):
2637  """Proxy of C++ IMP::core::XYZDerivativeGeometry class."""
2638 
2639  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2640 
2641  def __init__(self, *args):
2642  """
2643  __init__(IMP::core::XYZDerivativeGeometry self, Particle p) -> XYZDerivativeGeometry
2644  __init__(IMP::core::XYZDerivativeGeometry self, XYZ d) -> XYZDerivativeGeometry
2645  """
2646  this = _IMP_core.new_XYZDerivativeGeometry(*args)
2647  try:
2648  self.this.append(this)
2649  except __builtin__.Exception:
2650  self.this = this
2651 
2652  def get_version_info(self):
2653  """get_version_info(XYZDerivativeGeometry self) -> VersionInfo"""
2654  return _IMP_core.XYZDerivativeGeometry_get_version_info(self)
2655 
2656 
2657  def __str__(self):
2658  """__str__(XYZDerivativeGeometry self) -> std::string"""
2659  return _IMP_core.XYZDerivativeGeometry___str__(self)
2660 
2661 
2662  def __repr__(self):
2663  """__repr__(XYZDerivativeGeometry self) -> std::string"""
2664  return _IMP_core.XYZDerivativeGeometry___repr__(self)
2665 
2666 
2667  @staticmethod
2668  def get_from(o):
2669  return _object_cast_to_XYZDerivativeGeometry(o)
2670 
2671 XYZDerivativeGeometry_swigregister = _IMP_core.XYZDerivativeGeometry_swigregister
2672 XYZDerivativeGeometry_swigregister(XYZDerivativeGeometry)
2673 
2674 class XYZDerivativesGeometry(IMP.display.SingletonsGeometry):
2675  """Proxy of C++ IMP::core::XYZDerivativesGeometry class."""
2676 
2677  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2678 
2679  def __init__(self, sc):
2680  """__init__(IMP::core::XYZDerivativesGeometry self, SingletonContainer sc) -> XYZDerivativesGeometry"""
2681  this = _IMP_core.new_XYZDerivativesGeometry(sc)
2682  try:
2683  self.this.append(this)
2684  except __builtin__.Exception:
2685  self.this = this
2686 
2687  def get_version_info(self):
2688  """get_version_info(XYZDerivativesGeometry self) -> VersionInfo"""
2689  return _IMP_core.XYZDerivativesGeometry_get_version_info(self)
2690 
2691 
2692  def __str__(self):
2693  """__str__(XYZDerivativesGeometry self) -> std::string"""
2694  return _IMP_core.XYZDerivativesGeometry___str__(self)
2695 
2696 
2697  def __repr__(self):
2698  """__repr__(XYZDerivativesGeometry self) -> std::string"""
2699  return _IMP_core.XYZDerivativesGeometry___repr__(self)
2700 
2701 
2702  @staticmethod
2703  def get_from(o):
2704  return _object_cast_to_XYZDerivativesGeometry(o)
2705 
2706 XYZDerivativesGeometry_swigregister = _IMP_core.XYZDerivativesGeometry_swigregister
2707 XYZDerivativesGeometry_swigregister(XYZDerivativesGeometry)
2708 
2709 class EdgePairGeometry(IMP.display.PairGeometry):
2710  """Proxy of C++ IMP::core::EdgePairGeometry class."""
2711 
2712  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2713 
2714  def __init__(self, pp):
2715  """__init__(IMP::core::EdgePairGeometry self, IMP::ParticlePair const & pp) -> EdgePairGeometry"""
2716  this = _IMP_core.new_EdgePairGeometry(pp)
2717  try:
2718  self.this.append(this)
2719  except __builtin__.Exception:
2720  self.this = this
2721 
2722  def get_version_info(self):
2723  """get_version_info(EdgePairGeometry self) -> VersionInfo"""
2724  return _IMP_core.EdgePairGeometry_get_version_info(self)
2725 
2726 
2727  def __str__(self):
2728  """__str__(EdgePairGeometry self) -> std::string"""
2729  return _IMP_core.EdgePairGeometry___str__(self)
2730 
2731 
2732  def __repr__(self):
2733  """__repr__(EdgePairGeometry self) -> std::string"""
2734  return _IMP_core.EdgePairGeometry___repr__(self)
2735 
2736 
2737  @staticmethod
2738  def get_from(o):
2739  return _object_cast_to_EdgePairGeometry(o)
2740 
2741 EdgePairGeometry_swigregister = _IMP_core.EdgePairGeometry_swigregister
2742 EdgePairGeometry_swigregister(EdgePairGeometry)
2743 
2744 class EdgePairsGeometry(IMP.display.PairsGeometry):
2745  """Proxy of C++ IMP::core::EdgePairsGeometry class."""
2746 
2747  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2748 
2749  def __init__(self, sc):
2750  """__init__(IMP::core::EdgePairsGeometry self, PairContainer sc) -> EdgePairsGeometry"""
2751  this = _IMP_core.new_EdgePairsGeometry(sc)
2752  try:
2753  self.this.append(this)
2754  except __builtin__.Exception:
2755  self.this = this
2756 
2757  def get_version_info(self):
2758  """get_version_info(EdgePairsGeometry self) -> VersionInfo"""
2759  return _IMP_core.EdgePairsGeometry_get_version_info(self)
2760 
2761 
2762  def __str__(self):
2763  """__str__(EdgePairsGeometry self) -> std::string"""
2764  return _IMP_core.EdgePairsGeometry___str__(self)
2765 
2766 
2767  def __repr__(self):
2768  """__repr__(EdgePairsGeometry self) -> std::string"""
2769  return _IMP_core.EdgePairsGeometry___repr__(self)
2770 
2771 
2772  @staticmethod
2773  def get_from(o):
2774  return _object_cast_to_EdgePairsGeometry(o)
2775 
2776 EdgePairsGeometry_swigregister = _IMP_core.EdgePairsGeometry_swigregister
2777 EdgePairsGeometry_swigregister(EdgePairsGeometry)
2778 
2779 class Direction(IMP.Decorator):
2780  """Proxy of C++ IMP::core::Direction class."""
2781 
2782  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2783 
2784  def do_setup_particle(m, pi, v):
2785  """do_setup_particle(Model m, ParticleIndex pi, Vector3D v)"""
2786  return _IMP_core.Direction_do_setup_particle(m, pi, v)
2787 
2788  do_setup_particle = staticmethod(do_setup_particle)
2789 
2790  def __init__(self, *args):
2791  """
2792  __init__(IMP::core::Direction self) -> Direction
2793  __init__(IMP::core::Direction self, Model m, ParticleIndex id) -> Direction
2794  __init__(IMP::core::Direction self, _ParticleAdaptor d) -> Direction
2795  """
2796  this = _IMP_core.new_Direction(*args)
2797  try:
2798  self.this.append(this)
2799  except __builtin__.Exception:
2800  self.this = this
2801 
2802  def show(self, *args):
2803  """
2804  show(Direction self, _ostream out)
2805  show(Direction self)
2806  """
2807  return _IMP_core.Direction_show(self, *args)
2808 
2809 
2810  def setup_particle(*args):
2811  """
2812  setup_particle(Model m, ParticleIndex pi, Vector3D v) -> Direction
2813  setup_particle(_ParticleAdaptor decorator, Vector3D v) -> Direction
2814  """
2815  return _IMP_core.Direction_setup_particle(*args)
2816 
2817  setup_particle = staticmethod(setup_particle)
2818 
2819  def get_is_setup(*args):
2820  """
2821  get_is_setup(_ParticleAdaptor p) -> bool
2822  get_is_setup(Model m, ParticleIndex pi) -> bool
2823  """
2824  return _IMP_core.Direction_get_is_setup(*args)
2825 
2826  get_is_setup = staticmethod(get_is_setup)
2827 
2828  def get_direction_key(i):
2829  """get_direction_key(unsigned int i) -> FloatKey"""
2830  return _IMP_core.Direction_get_direction_key(i)
2831 
2832  get_direction_key = staticmethod(get_direction_key)
2833 
2834  def get_direction_derivative(self, i):
2835  """get_direction_derivative(Direction self, int i) -> IMP::Float"""
2836  return _IMP_core.Direction_get_direction_derivative(self, i)
2837 
2838 
2839  def get_direction_derivatives(self):
2840  """get_direction_derivatives(Direction self) -> Vector3D"""
2841  return _IMP_core.Direction_get_direction_derivatives(self)
2842 
2843 
2844  def add_to_direction_derivative(self, i, v, d):
2845  """add_to_direction_derivative(Direction self, int i, IMP::Float v, DerivativeAccumulator d)"""
2846  return _IMP_core.Direction_add_to_direction_derivative(self, i, v, d)
2847 
2848 
2849  def add_to_direction_derivatives(self, v, d):
2850  """add_to_direction_derivatives(Direction self, Vector3D v, DerivativeAccumulator d)"""
2851  return _IMP_core.Direction_add_to_direction_derivatives(self, v, d)
2852 
2853 
2854  def get_direction_is_optimized(self):
2855  """get_direction_is_optimized(Direction self) -> bool"""
2856  return _IMP_core.Direction_get_direction_is_optimized(self)
2857 
2858 
2859  def set_direction_is_optimized(self, tf):
2860  """set_direction_is_optimized(Direction self, bool tf)"""
2861  return _IMP_core.Direction_set_direction_is_optimized(self, tf)
2862 
2863 
2864  def get_direction(self):
2865  """get_direction(Direction self) -> Vector3D"""
2866  return _IMP_core.Direction_get_direction(self)
2867 
2868 
2869  def set_direction(self, v):
2870  """set_direction(Direction self, Vector3D v)"""
2871  return _IMP_core.Direction_set_direction(self, v)
2872 
2873 
2874  def reflect(self):
2875  """reflect(Direction self)"""
2876  return _IMP_core.Direction_reflect(self)
2877 
2878 
2879  def add_attribute(self, *args):
2880  """
2881  add_attribute(Direction self, FloatKey k, IMP::Float v, bool opt)
2882  add_attribute(Direction self, FloatKey a0, IMP::Float a1)
2883  add_attribute(Direction self, IntKey a0, IMP::Int a1)
2884  add_attribute(Direction self, StringKey a0, IMP::String a1)
2885  add_attribute(Direction self, ParticleIndexKey a0, Particle a1)
2886  add_attribute(Direction self, ObjectKey a0, Object a1)
2887  """
2888  return _IMP_core.Direction_add_attribute(self, *args)
2889 
2890 
2891  def get_value(self, *args):
2892  """
2893  get_value(Direction self, FloatKey a0) -> IMP::Float
2894  get_value(Direction self, IntKey a0) -> IMP::Int
2895  get_value(Direction self, StringKey a0) -> IMP::String
2896  get_value(Direction self, ParticleIndexKey a0) -> Particle
2897  get_value(Direction self, ObjectKey a0) -> Object
2898  """
2899  return _IMP_core.Direction_get_value(self, *args)
2900 
2901 
2902  def set_value(self, *args):
2903  """
2904  set_value(Direction self, FloatKey a0, IMP::Float a1)
2905  set_value(Direction self, IntKey a0, IMP::Int a1)
2906  set_value(Direction self, StringKey a0, IMP::String a1)
2907  set_value(Direction self, ParticleIndexKey a0, Particle a1)
2908  set_value(Direction self, ObjectKey a0, Object a1)
2909  """
2910  return _IMP_core.Direction_set_value(self, *args)
2911 
2912 
2913  def remove_attribute(self, *args):
2914  """
2915  remove_attribute(Direction self, FloatKey a0)
2916  remove_attribute(Direction self, IntKey a0)
2917  remove_attribute(Direction self, StringKey a0)
2918  remove_attribute(Direction self, ParticleIndexKey a0)
2919  remove_attribute(Direction self, ObjectKey a0)
2920  """
2921  return _IMP_core.Direction_remove_attribute(self, *args)
2922 
2923 
2924  def has_attribute(self, *args):
2925  """
2926  has_attribute(Direction self, FloatKey a0) -> bool
2927  has_attribute(Direction self, IntKey a0) -> bool
2928  has_attribute(Direction self, StringKey a0) -> bool
2929  has_attribute(Direction self, ParticleIndexKey a0) -> bool
2930  has_attribute(Direction self, ObjectKey a0) -> bool
2931  """
2932  return _IMP_core.Direction_has_attribute(self, *args)
2933 
2934 
2935  def get_derivative(self, a0):
2936  """get_derivative(Direction self, FloatKey a0) -> double"""
2937  return _IMP_core.Direction_get_derivative(self, a0)
2938 
2939 
2940  def get_name(self):
2941  """get_name(Direction self) -> std::string"""
2942  return _IMP_core.Direction_get_name(self)
2943 
2944 
2945  def clear_caches(self):
2946  """clear_caches(Direction self)"""
2947  return _IMP_core.Direction_clear_caches(self)
2948 
2949 
2950  def set_name(self, a0):
2951  """set_name(Direction self, std::string a0)"""
2952  return _IMP_core.Direction_set_name(self, a0)
2953 
2954 
2955  def set_check_level(self, a0):
2956  """set_check_level(Direction self, IMP::CheckLevel a0)"""
2957  return _IMP_core.Direction_set_check_level(self, a0)
2958 
2959 
2960  def add_to_derivative(self, a0, a1, a2):
2961  """add_to_derivative(Direction self, FloatKey a0, double a1, DerivativeAccumulator a2)"""
2962  return _IMP_core.Direction_add_to_derivative(self, a0, a1, a2)
2963 
2964 
2965  def set_is_optimized(self, a0, a1):
2966  """set_is_optimized(Direction self, FloatKey a0, bool a1)"""
2967  return _IMP_core.Direction_set_is_optimized(self, a0, a1)
2968 
2969 
2970  def get_is_optimized(self, a0):
2971  """get_is_optimized(Direction self, FloatKey a0) -> bool"""
2972  return _IMP_core.Direction_get_is_optimized(self, a0)
2973 
2974 
2975  def get_check_level(self):
2976  """get_check_level(Direction self) -> IMP::CheckLevel"""
2977  return _IMP_core.Direction_get_check_level(self)
2978 
2979 
2980  def __eq__(self, *args):
2981  """
2982  __eq__(Direction self, Direction o) -> bool
2983  __eq__(Direction self, Particle d) -> bool
2984  """
2985  return _IMP_core.Direction___eq__(self, *args)
2986 
2987 
2988  def __ne__(self, *args):
2989  """
2990  __ne__(Direction self, Direction o) -> bool
2991  __ne__(Direction self, Particle d) -> bool
2992  """
2993  return _IMP_core.Direction___ne__(self, *args)
2994 
2995 
2996  def __le__(self, *args):
2997  """
2998  __le__(Direction self, Direction o) -> bool
2999  __le__(Direction self, Particle d) -> bool
3000  """
3001  return _IMP_core.Direction___le__(self, *args)
3002 
3003 
3004  def __lt__(self, *args):
3005  """
3006  __lt__(Direction self, Direction o) -> bool
3007  __lt__(Direction self, Particle d) -> bool
3008  """
3009  return _IMP_core.Direction___lt__(self, *args)
3010 
3011 
3012  def __ge__(self, *args):
3013  """
3014  __ge__(Direction self, Direction o) -> bool
3015  __ge__(Direction self, Particle d) -> bool
3016  """
3017  return _IMP_core.Direction___ge__(self, *args)
3018 
3019 
3020  def __gt__(self, *args):
3021  """
3022  __gt__(Direction self, Direction o) -> bool
3023  __gt__(Direction self, Particle d) -> bool
3024  """
3025  return _IMP_core.Direction___gt__(self, *args)
3026 
3027 
3028  def __hash__(self):
3029  """__hash__(Direction self) -> std::size_t"""
3030  return _IMP_core.Direction___hash__(self)
3031 
3032 
3033  def __str__(self):
3034  """__str__(Direction self) -> std::string"""
3035  return _IMP_core.Direction___str__(self)
3036 
3037 
3038  def __repr__(self):
3039  """__repr__(Direction self) -> std::string"""
3040  return _IMP_core.Direction___repr__(self)
3041 
3042  __swig_destroy__ = _IMP_core.delete_Direction
3043  __del__ = lambda self: None
3044 Direction_swigregister = _IMP_core.Direction_swigregister
3045 Direction_swigregister(Direction)
3046 
3047 def Direction_do_setup_particle(m, pi, v):
3048  """Direction_do_setup_particle(Model m, ParticleIndex pi, Vector3D v)"""
3049  return _IMP_core.Direction_do_setup_particle(m, pi, v)
3050 
3051 def Direction_setup_particle(*args):
3052  """
3053  setup_particle(Model m, ParticleIndex pi, Vector3D v) -> Direction
3054  Direction_setup_particle(_ParticleAdaptor decorator, Vector3D v) -> Direction
3055  """
3056  return _IMP_core.Direction_setup_particle(*args)
3057 
3058 def Direction_get_is_setup(*args):
3059  """
3060  get_is_setup(_ParticleAdaptor p) -> bool
3061  Direction_get_is_setup(Model m, ParticleIndex pi) -> bool
3062  """
3063  return _IMP_core.Direction_get_is_setup(*args)
3064 
3065 def Direction_get_direction_key(i):
3066  """Direction_get_direction_key(unsigned int i) -> FloatKey"""
3067  return _IMP_core.Direction_get_direction_key(i)
3068 
3069 
3070 def get_angle(a, b):
3071  """get_angle(Direction a, Direction b) -> double"""
3072  return _IMP_core.get_angle(a, b)
3073 class DirectionAngle(IMP.Decorator):
3074  """Proxy of C++ IMP::core::DirectionAngle class."""
3075 
3076  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
3077 
3078  def __init__(self, *args):
3079  """
3080  __init__(IMP::core::DirectionAngle self) -> DirectionAngle
3081  __init__(IMP::core::DirectionAngle self, Model m, ParticleIndex id) -> DirectionAngle
3082  __init__(IMP::core::DirectionAngle self, _ParticleAdaptor d) -> DirectionAngle
3083  """
3084  this = _IMP_core.new_DirectionAngle(*args)
3085  try:
3086  self.this.append(this)
3087  except __builtin__.Exception:
3088  self.this = this
3089 
3090  def show(self, *args):
3091  """
3092  show(DirectionAngle self, _ostream out)
3093  show(DirectionAngle self)
3094  """
3095  return _IMP_core.DirectionAngle_show(self, *args)
3096 
3097 
3098  def setup_particle(*args):
3099  """
3100  setup_particle(Model m, ParticleIndex pi, IMP::ParticleIndexPair ds) -> DirectionAngle
3101  setup_particle(_ParticleAdaptor decorator, IMP::ParticleIndexPair ds) -> DirectionAngle
3102  setup_particle(Model m, ParticleIndex pi, _ParticleIndexAdaptor d0, _ParticleIndexAdaptor d1) -> DirectionAngle
3103  setup_particle(_ParticleAdaptor decorator, _ParticleIndexAdaptor d0, _ParticleIndexAdaptor d1) -> DirectionAngle
3104  """
3105  return _IMP_core.DirectionAngle_setup_particle(*args)
3106 
3107  setup_particle = staticmethod(setup_particle)
3108 
3109  def get_is_setup(*args):
3110  """
3111  get_is_setup(_ParticleAdaptor p) -> bool
3112  get_is_setup(Model m, ParticleIndex pi) -> bool
3113  """
3114  return _IMP_core.DirectionAngle_get_is_setup(*args)
3115 
3116  get_is_setup = staticmethod(get_is_setup)
3117 
3118  def get_angle_key():
3119  """get_angle_key() -> FloatKey"""
3120  return _IMP_core.DirectionAngle_get_angle_key()
3121 
3122  get_angle_key = staticmethod(get_angle_key)
3123 
3124  def get_particle_key(i):
3125  """get_particle_key(unsigned int i) -> ParticleIndexKey"""
3126  return _IMP_core.DirectionAngle_get_particle_key(i)
3127 
3128  get_particle_key = staticmethod(get_particle_key)
3129 
3130  def get_particle(self, *args):
3131  """
3132  get_particle(DirectionAngle self, unsigned int i) -> Particle
3133  get_particle(DirectionAngle self) -> Particle
3134  """
3135  return _IMP_core.DirectionAngle_get_particle(self, *args)
3136 
3137 
3138  def get_particle_index(self, *args):
3139  """
3140  get_particle_index(DirectionAngle self, unsigned int i) -> ParticleIndex
3141  get_particle_index(DirectionAngle self) -> ParticleIndex
3142  """
3143  return _IMP_core.DirectionAngle_get_particle_index(self, *args)
3144 
3145 
3146  def get_angle(self):
3147  """get_angle(DirectionAngle self) -> IMP::Float"""
3148  return _IMP_core.DirectionAngle_get_angle(self)
3149 
3150 
3151  def get_angle_derivative(self):
3152  """get_angle_derivative(DirectionAngle self) -> IMP::Float"""
3153  return _IMP_core.DirectionAngle_get_angle_derivative(self)
3154 
3155 
3156  def add_to_angle_derivative(self, v, d):
3157  """add_to_angle_derivative(DirectionAngle self, IMP::Float v, DerivativeAccumulator d)"""
3158  return _IMP_core.DirectionAngle_add_to_angle_derivative(self, v, d)
3159 
3160 
3161  def add_attribute(self, *args):
3162  """
3163  add_attribute(DirectionAngle self, FloatKey k, IMP::Float v, bool opt)
3164  add_attribute(DirectionAngle self, FloatKey a0, IMP::Float a1)
3165  add_attribute(DirectionAngle self, IntKey a0, IMP::Int a1)
3166  add_attribute(DirectionAngle self, StringKey a0, IMP::String a1)
3167  add_attribute(DirectionAngle self, ParticleIndexKey a0, Particle a1)
3168  add_attribute(DirectionAngle self, ObjectKey a0, Object a1)
3169  """
3170  return _IMP_core.DirectionAngle_add_attribute(self, *args)
3171 
3172 
3173  def get_value(self, *args):
3174  """
3175  get_value(DirectionAngle self, FloatKey a0) -> IMP::Float
3176  get_value(DirectionAngle self, IntKey a0) -> IMP::Int
3177  get_value(DirectionAngle self, StringKey a0) -> IMP::String
3178  get_value(DirectionAngle self, ParticleIndexKey a0) -> Particle
3179  get_value(DirectionAngle self, ObjectKey a0) -> Object
3180  """
3181  return _IMP_core.DirectionAngle_get_value(self, *args)
3182 
3183 
3184  def set_value(self, *args):
3185  """
3186  set_value(DirectionAngle self, FloatKey a0, IMP::Float a1)
3187  set_value(DirectionAngle self, IntKey a0, IMP::Int a1)
3188  set_value(DirectionAngle self, StringKey a0, IMP::String a1)
3189  set_value(DirectionAngle self, ParticleIndexKey a0, Particle a1)
3190  set_value(DirectionAngle self, ObjectKey a0, Object a1)
3191  """
3192  return _IMP_core.DirectionAngle_set_value(self, *args)
3193 
3194 
3195  def remove_attribute(self, *args):
3196  """
3197  remove_attribute(DirectionAngle self, FloatKey a0)
3198  remove_attribute(DirectionAngle self, IntKey a0)
3199  remove_attribute(DirectionAngle self, StringKey a0)
3200  remove_attribute(DirectionAngle self, ParticleIndexKey a0)
3201  remove_attribute(DirectionAngle self, ObjectKey a0)
3202  """
3203  return _IMP_core.DirectionAngle_remove_attribute(self, *args)
3204 
3205 
3206  def has_attribute(self, *args):
3207  """
3208  has_attribute(DirectionAngle self, FloatKey a0) -> bool
3209  has_attribute(DirectionAngle self, IntKey a0) -> bool
3210  has_attribute(DirectionAngle self, StringKey a0) -> bool
3211  has_attribute(DirectionAngle self, ParticleIndexKey a0) -> bool
3212  has_attribute(DirectionAngle self, ObjectKey a0) -> bool
3213  """
3214  return _IMP_core.DirectionAngle_has_attribute(self, *args)
3215 
3216 
3217  def get_derivative(self, a0):
3218  """get_derivative(DirectionAngle self, FloatKey a0) -> double"""
3219  return _IMP_core.DirectionAngle_get_derivative(self, a0)
3220 
3221 
3222  def get_name(self):
3223  """get_name(DirectionAngle self) -> std::string"""
3224  return _IMP_core.DirectionAngle_get_name(self)
3225 
3226 
3227  def clear_caches(self):
3228  """clear_caches(DirectionAngle self)"""
3229  return _IMP_core.DirectionAngle_clear_caches(self)
3230 
3231 
3232  def set_name(self, a0):
3233  """set_name(DirectionAngle self, std::string a0)"""
3234  return _IMP_core.DirectionAngle_set_name(self, a0)
3235 
3236 
3237  def set_check_level(self, a0):
3238  """set_check_level(DirectionAngle self, IMP::CheckLevel a0)"""
3239  return _IMP_core.DirectionAngle_set_check_level(self, a0)
3240 
3241 
3242  def add_to_derivative(self, a0, a1, a2):
3243  """add_to_derivative(DirectionAngle self, FloatKey a0, double a1, DerivativeAccumulator a2)"""
3244  return _IMP_core.DirectionAngle_add_to_derivative(self, a0, a1, a2)
3245 
3246 
3247  def set_is_optimized(self, a0, a1):
3248  """set_is_optimized(DirectionAngle self, FloatKey a0, bool a1)"""
3249  return _IMP_core.DirectionAngle_set_is_optimized(self, a0, a1)
3250 
3251 
3252  def get_is_optimized(self, a0):
3253  """get_is_optimized(DirectionAngle self, FloatKey a0) -> bool"""
3254  return _IMP_core.DirectionAngle_get_is_optimized(self, a0)
3255 
3256 
3257  def get_check_level(self):
3258  """get_check_level(DirectionAngle self) -> IMP::CheckLevel"""
3259  return _IMP_core.DirectionAngle_get_check_level(self)
3260 
3261 
3262  def __eq__(self, *args):
3263  """
3264  __eq__(DirectionAngle self, DirectionAngle o) -> bool
3265  __eq__(DirectionAngle self, Particle d) -> bool
3266  """
3267  return _IMP_core.DirectionAngle___eq__(self, *args)
3268 
3269 
3270  def __ne__(self, *args):
3271  """
3272  __ne__(DirectionAngle self, DirectionAngle o) -> bool
3273  __ne__(DirectionAngle self, Particle d) -> bool
3274  """
3275  return _IMP_core.DirectionAngle___ne__(self, *args)
3276 
3277 
3278  def __le__(self, *args):
3279  """
3280  __le__(DirectionAngle self, DirectionAngle o) -> bool
3281  __le__(DirectionAngle self, Particle d) -> bool
3282  """
3283  return _IMP_core.DirectionAngle___le__(self, *args)
3284 
3285 
3286  def __lt__(self, *args):
3287  """
3288  __lt__(DirectionAngle self, DirectionAngle o) -> bool
3289  __lt__(DirectionAngle self, Particle d) -> bool
3290  """
3291  return _IMP_core.DirectionAngle___lt__(self, *args)
3292 
3293 
3294  def __ge__(self, *args):
3295  """
3296  __ge__(DirectionAngle self, DirectionAngle o) -> bool
3297  __ge__(DirectionAngle self, Particle d) -> bool
3298  """
3299  return _IMP_core.DirectionAngle___ge__(self, *args)
3300 
3301 
3302  def __gt__(self, *args):
3303  """
3304  __gt__(DirectionAngle self, DirectionAngle o) -> bool
3305  __gt__(DirectionAngle self, Particle d) -> bool
3306  """
3307  return _IMP_core.DirectionAngle___gt__(self, *args)
3308 
3309 
3310  def __hash__(self):
3311  """__hash__(DirectionAngle self) -> std::size_t"""
3312  return _IMP_core.DirectionAngle___hash__(self)
3313 
3314 
3315  def __str__(self):
3316  """__str__(DirectionAngle self) -> std::string"""
3317  return _IMP_core.DirectionAngle___str__(self)
3318 
3319 
3320  def __repr__(self):
3321  """__repr__(DirectionAngle self) -> std::string"""
3322  return _IMP_core.DirectionAngle___repr__(self)
3323 
3324  __swig_destroy__ = _IMP_core.delete_DirectionAngle
3325  __del__ = lambda self: None
3326 DirectionAngle_swigregister = _IMP_core.DirectionAngle_swigregister
3327 DirectionAngle_swigregister(DirectionAngle)
3328 
3329 def DirectionAngle_setup_particle(*args):
3330  """
3331  setup_particle(Model m, ParticleIndex pi, IMP::ParticleIndexPair ds) -> DirectionAngle
3332  setup_particle(_ParticleAdaptor decorator, IMP::ParticleIndexPair ds) -> DirectionAngle
3333  setup_particle(Model m, ParticleIndex pi, _ParticleIndexAdaptor d0, _ParticleIndexAdaptor d1) -> DirectionAngle
3334  DirectionAngle_setup_particle(_ParticleAdaptor decorator, _ParticleIndexAdaptor d0, _ParticleIndexAdaptor d1) -> DirectionAngle
3335  """
3336  return _IMP_core.DirectionAngle_setup_particle(*args)
3337 
3338 def DirectionAngle_get_is_setup(*args):
3339  """
3340  get_is_setup(_ParticleAdaptor p) -> bool
3341  DirectionAngle_get_is_setup(Model m, ParticleIndex pi) -> bool
3342  """
3343  return _IMP_core.DirectionAngle_get_is_setup(*args)
3344 
3345 def DirectionAngle_get_angle_key():
3346  """DirectionAngle_get_angle_key() -> FloatKey"""
3347  return _IMP_core.DirectionAngle_get_angle_key()
3348 
3349 def DirectionAngle_get_particle_key(i):
3350  """DirectionAngle_get_particle_key(unsigned int i) -> ParticleIndexKey"""
3351  return _IMP_core.DirectionAngle_get_particle_key(i)
3352 
3353 class Surface(XYZ):
3354  """Proxy of C++ IMP::core::Surface class."""
3355 
3356  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
3357 
3358  def do_setup_particle(*args):
3359  """
3360  do_setup_particle(Model m, ParticleIndex pi, Vector3D center, Vector3D normal)
3361  do_setup_particle(Model m, ParticleIndex pi, Vector3D center)
3362  do_setup_particle(Model m, ParticleIndex pi)
3363  do_setup_particle(Model m, ParticleIndex pi, ReferenceFrame3D rf)
3364  """
3365  return _IMP_core.Surface_do_setup_particle(*args)
3366 
3367  do_setup_particle = staticmethod(do_setup_particle)
3368 
3369  def __init__(self, *args):
3370  """
3371  __init__(IMP::core::Surface self) -> Surface
3372  __init__(IMP::core::Surface self, Model m, ParticleIndex id) -> Surface
3373  __init__(IMP::core::Surface self, _ParticleAdaptor d) -> Surface
3374  """
3375  this = _IMP_core.new_Surface(*args)
3376  try:
3377  self.this.append(this)
3378  except __builtin__.Exception:
3379  self.this = this
3380 
3381  def show(self, *args):
3382  """
3383  show(Surface self, _ostream out)
3384  show(Surface self)
3385  """
3386  return _IMP_core.Surface_show(self, *args)
3387 
3388 
3389  def setup_particle(*args):
3390  """
3391  setup_particle(Model m, ParticleIndex pi) -> Surface
3392  setup_particle(_ParticleAdaptor decorator) -> Surface
3393  setup_particle(Model m, ParticleIndex pi, ReferenceFrame3D rf) -> Surface
3394  setup_particle(_ParticleAdaptor decorator, ReferenceFrame3D rf) -> Surface
3395  setup_particle(Model m, ParticleIndex pi, Vector3D center) -> Surface
3396  setup_particle(_ParticleAdaptor decorator, Vector3D center) -> Surface
3397  setup_particle(Model m, ParticleIndex pi, Vector3D center, Vector3D normal) -> Surface
3398  setup_particle(_ParticleAdaptor decorator, Vector3D center, Vector3D normal) -> Surface
3399  """
3400  return _IMP_core.Surface_setup_particle(*args)
3401 
3402  setup_particle = staticmethod(setup_particle)
3403 
3404  def get_normal_x(self):
3405  """get_normal_x(Surface self) -> IMP::Float"""
3406  return _IMP_core.Surface_get_normal_x(self)
3407 
3408 
3409  def set_normal_x(self, t):
3410  """set_normal_x(Surface self, IMP::Float t)"""
3411  return _IMP_core.Surface_set_normal_x(self, t)
3412 
3413 
3414  def get_normal_y(self):
3415  """get_normal_y(Surface self) -> IMP::Float"""
3416  return _IMP_core.Surface_get_normal_y(self)
3417 
3418 
3419  def set_normal_y(self, t):
3420  """set_normal_y(Surface self, IMP::Float t)"""
3421  return _IMP_core.Surface_set_normal_y(self, t)
3422 
3423 
3424  def get_normal_z(self):
3425  """get_normal_z(Surface self) -> IMP::Float"""
3426  return _IMP_core.Surface_get_normal_z(self)
3427 
3428 
3429  def set_normal_z(self, t):
3430  """set_normal_z(Surface self, IMP::Float t)"""
3431  return _IMP_core.Surface_set_normal_z(self, t)
3432 
3433 
3434  def get_is_setup(*args):
3435  """
3436  get_is_setup(_ParticleAdaptor p) -> bool
3437  get_is_setup(Model m, ParticleIndex pi) -> bool
3438  """
3439  return _IMP_core.Surface_get_is_setup(*args)
3440 
3441  get_is_setup = staticmethod(get_is_setup)
3442 
3443  def get_normal_key(i):
3444  """get_normal_key(unsigned int i) -> FloatKey"""
3445  return _IMP_core.Surface_get_normal_key(i)
3446 
3447  get_normal_key = staticmethod(get_normal_key)
3448 
3449  def get_normal_derivative(self, i):
3450  """get_normal_derivative(Surface self, int i) -> IMP::Float"""
3451  return _IMP_core.Surface_get_normal_derivative(self, i)
3452 
3453 
3454  def get_normal_derivatives(self):
3455  """get_normal_derivatives(Surface self) -> Vector3D"""
3456  return _IMP_core.Surface_get_normal_derivatives(self)
3457 
3458 
3459  def add_to_normal_derivative(self, i, v, d):
3460  """add_to_normal_derivative(Surface self, int i, IMP::Float v, DerivativeAccumulator d)"""
3461  return _IMP_core.Surface_add_to_normal_derivative(self, i, v, d)
3462 
3463 
3464  def add_to_normal_derivatives(self, v, d):
3465  """add_to_normal_derivatives(Surface self, Vector3D v, DerivativeAccumulator d)"""
3466  return _IMP_core.Surface_add_to_normal_derivatives(self, v, d)
3467 
3468 
3469  def get_normal_is_optimized(self):
3470  """get_normal_is_optimized(Surface self) -> bool"""
3471  return _IMP_core.Surface_get_normal_is_optimized(self)
3472 
3473 
3474  def set_normal_is_optimized(self, tf):
3475  """set_normal_is_optimized(Surface self, bool tf)"""
3476  return _IMP_core.Surface_set_normal_is_optimized(self, tf)
3477 
3478 
3479  def get_normal(self):
3480  """get_normal(Surface self) -> Vector3D"""
3481  return _IMP_core.Surface_get_normal(self)
3482 
3483 
3484  def set_normal(self, normal):
3485  """set_normal(Surface self, Vector3D normal)"""
3486  return _IMP_core.Surface_set_normal(self, normal)
3487 
3488 
3489  def reflect(self):
3490  """reflect(Surface self)"""
3491  return _IMP_core.Surface_reflect(self)
3492 
3493 
3494  def get_height(self, v):
3495  """get_height(Surface self, Vector3D v) -> double"""
3496  return _IMP_core.Surface_get_height(self, v)
3497 
3498 
3499  def get_depth(self, v):
3500  """get_depth(Surface self, Vector3D v) -> double"""
3501  return _IMP_core.Surface_get_depth(self, v)
3502 
3503 
3504  def get_distance_to(self, v):
3505  """get_distance_to(Surface self, Vector3D v) -> double"""
3506  return _IMP_core.Surface_get_distance_to(self, v)
3507 
3508 
3509  def get_distance_to_center(self, v):
3510  """get_distance_to_center(Surface self, Vector3D v) -> double"""
3511  return _IMP_core.Surface_get_distance_to_center(self, v)
3512 
3513 
3514  def set_reference_frame(self, rf):
3515  """set_reference_frame(Surface self, ReferenceFrame3D rf)"""
3516  return _IMP_core.Surface_set_reference_frame(self, rf)
3517 
3518 
3519  def get_reference_frame(self):
3520  """get_reference_frame(Surface self) -> ReferenceFrame3D"""
3521  return _IMP_core.Surface_get_reference_frame(self)
3522 
3523 
3524  def get_plane(self):
3525  """get_plane(Surface self) -> Plane3D"""
3526  return _IMP_core.Surface_get_plane(self)
3527 
3528 
3529  def add_attribute(self, *args):
3530  """
3531  add_attribute(Surface self, FloatKey k, IMP::Float v, bool opt)
3532  add_attribute(Surface self, FloatKey a0, IMP::Float a1)
3533  add_attribute(Surface self, IntKey a0, IMP::Int a1)
3534  add_attribute(Surface self, StringKey a0, IMP::String a1)
3535  add_attribute(Surface self, ParticleIndexKey a0, Particle a1)
3536  add_attribute(Surface self, ObjectKey a0, Object a1)
3537  """
3538  return _IMP_core.Surface_add_attribute(self, *args)
3539 
3540 
3541  def get_value(self, *args):
3542  """
3543  get_value(Surface self, FloatKey a0) -> IMP::Float
3544  get_value(Surface self, IntKey a0) -> IMP::Int
3545  get_value(Surface self, StringKey a0) -> IMP::String
3546  get_value(Surface self, ParticleIndexKey a0) -> Particle
3547  get_value(Surface self, ObjectKey a0) -> Object
3548  """
3549  return _IMP_core.Surface_get_value(self, *args)
3550 
3551 
3552  def set_value(self, *args):
3553  """
3554  set_value(Surface self, FloatKey a0, IMP::Float a1)
3555  set_value(Surface self, IntKey a0, IMP::Int a1)
3556  set_value(Surface self, StringKey a0, IMP::String a1)
3557  set_value(Surface self, ParticleIndexKey a0, Particle a1)
3558  set_value(Surface self, ObjectKey a0, Object a1)
3559  """
3560  return _IMP_core.Surface_set_value(self, *args)
3561 
3562 
3563  def remove_attribute(self, *args):
3564  """
3565  remove_attribute(Surface self, FloatKey a0)
3566  remove_attribute(Surface self, IntKey a0)
3567  remove_attribute(Surface self, StringKey a0)
3568  remove_attribute(Surface self, ParticleIndexKey a0)
3569  remove_attribute(Surface self, ObjectKey a0)
3570  """
3571  return _IMP_core.Surface_remove_attribute(self, *args)
3572 
3573 
3574  def has_attribute(self, *args):
3575  """
3576  has_attribute(Surface self, FloatKey a0) -> bool
3577  has_attribute(Surface self, IntKey a0) -> bool
3578  has_attribute(Surface self, StringKey a0) -> bool
3579  has_attribute(Surface self, ParticleIndexKey a0) -> bool
3580  has_attribute(Surface self, ObjectKey a0) -> bool
3581  """
3582  return _IMP_core.Surface_has_attribute(self, *args)
3583 
3584 
3585  def get_derivative(self, a0):
3586  """get_derivative(Surface self, FloatKey a0) -> double"""
3587  return _IMP_core.Surface_get_derivative(self, a0)
3588 
3589 
3590  def get_name(self):
3591  """get_name(Surface self) -> std::string"""
3592  return _IMP_core.Surface_get_name(self)
3593 
3594 
3595  def clear_caches(self):
3596  """clear_caches(Surface self)"""
3597  return _IMP_core.Surface_clear_caches(self)
3598 
3599 
3600  def set_name(self, a0):
3601  """set_name(Surface self, std::string a0)"""
3602  return _IMP_core.Surface_set_name(self, a0)
3603 
3604 
3605  def set_check_level(self, a0):
3606  """set_check_level(Surface self, IMP::CheckLevel a0)"""
3607  return _IMP_core.Surface_set_check_level(self, a0)
3608 
3609 
3610  def add_to_derivative(self, a0, a1, a2):
3611  """add_to_derivative(Surface self, FloatKey a0, double a1, DerivativeAccumulator a2)"""
3612  return _IMP_core.Surface_add_to_derivative(self, a0, a1, a2)
3613 
3614 
3615  def set_is_optimized(self, a0, a1):
3616  """set_is_optimized(Surface self, FloatKey a0, bool a1)"""
3617  return _IMP_core.Surface_set_is_optimized(self, a0, a1)
3618 
3619 
3620  def get_is_optimized(self, a0):
3621  """get_is_optimized(Surface self, FloatKey a0) -> bool"""
3622  return _IMP_core.Surface_get_is_optimized(self, a0)
3623 
3624 
3625  def get_check_level(self):
3626  """get_check_level(Surface self) -> IMP::CheckLevel"""
3627  return _IMP_core.Surface_get_check_level(self)
3628 
3629 
3630  def __eq__(self, *args):
3631  """
3632  __eq__(Surface self, Surface o) -> bool
3633  __eq__(Surface self, Particle d) -> bool
3634  """
3635  return _IMP_core.Surface___eq__(self, *args)
3636 
3637 
3638  def __ne__(self, *args):
3639  """
3640  __ne__(Surface self, Surface o) -> bool
3641  __ne__(Surface self, Particle d) -> bool
3642  """
3643  return _IMP_core.Surface___ne__(self, *args)
3644 
3645 
3646  def __le__(self, *args):
3647  """
3648  __le__(Surface self, Surface o) -> bool
3649  __le__(Surface self, Particle d) -> bool
3650  """
3651  return _IMP_core.Surface___le__(self, *args)
3652 
3653 
3654  def __lt__(self, *args):
3655  """
3656  __lt__(Surface self, Surface o) -> bool
3657  __lt__(Surface self, Particle d) -> bool
3658  """
3659  return _IMP_core.Surface___lt__(self, *args)
3660 
3661 
3662  def __ge__(self, *args):
3663  """
3664  __ge__(Surface self, Surface o) -> bool
3665  __ge__(Surface self, Particle d) -> bool
3666  """
3667  return _IMP_core.Surface___ge__(self, *args)
3668 
3669 
3670  def __gt__(self, *args):
3671  """
3672  __gt__(Surface self, Surface o) -> bool
3673  __gt__(Surface self, Particle d) -> bool
3674  """
3675  return _IMP_core.Surface___gt__(self, *args)
3676 
3677 
3678  def __hash__(self):
3679  """__hash__(Surface self) -> std::size_t"""
3680  return _IMP_core.Surface___hash__(self)
3681 
3682 
3683  def __str__(self):
3684  """__str__(Surface self) -> std::string"""
3685  return _IMP_core.Surface___str__(self)
3686 
3687 
3688  def __repr__(self):
3689  """__repr__(Surface self) -> std::string"""
3690  return _IMP_core.Surface___repr__(self)
3691 
3692  __swig_destroy__ = _IMP_core.delete_Surface
3693  __del__ = lambda self: None
3694 Surface_swigregister = _IMP_core.Surface_swigregister
3695 Surface_swigregister(Surface)
3696 
3697 def Surface_do_setup_particle(*args):
3698  """
3699  do_setup_particle(Model m, ParticleIndex pi, Vector3D center, Vector3D normal)
3700  do_setup_particle(Model m, ParticleIndex pi, Vector3D center)
3701  do_setup_particle(Model m, ParticleIndex pi)
3702  Surface_do_setup_particle(Model m, ParticleIndex pi, ReferenceFrame3D rf)
3703  """
3704  return _IMP_core.Surface_do_setup_particle(*args)
3705 
3706 def Surface_setup_particle(*args):
3707  """
3708  setup_particle(Model m, ParticleIndex pi) -> Surface
3709  setup_particle(_ParticleAdaptor decorator) -> Surface
3710  setup_particle(Model m, ParticleIndex pi, ReferenceFrame3D rf) -> Surface
3711  setup_particle(_ParticleAdaptor decorator, ReferenceFrame3D rf) -> Surface
3712  setup_particle(Model m, ParticleIndex pi, Vector3D center) -> Surface
3713  setup_particle(_ParticleAdaptor decorator, Vector3D center) -> Surface
3714  setup_particle(Model m, ParticleIndex pi, Vector3D center, Vector3D normal) -> Surface
3715  Surface_setup_particle(_ParticleAdaptor decorator, Vector3D center, Vector3D normal) -> Surface
3716  """
3717  return _IMP_core.Surface_setup_particle(*args)
3718 
3719 def Surface_get_is_setup(*args):
3720  """
3721  get_is_setup(_ParticleAdaptor p) -> bool
3722  Surface_get_is_setup(Model m, ParticleIndex pi) -> bool
3723  """
3724  return _IMP_core.Surface_get_is_setup(*args)
3725 
3726 def Surface_get_normal_key(i):
3727  """Surface_get_normal_key(unsigned int i) -> FloatKey"""
3728  return _IMP_core.Surface_get_normal_key(i)
3729 
3730 
3731 def get_height(*args):
3732  """
3733  get_height(Surface s, XYZR d) -> double
3734  get_height(Surface s, XYZ d) -> double
3735  """
3736  return _IMP_core.get_height(*args)
3737 
3738 def get_depth(*args):
3739  """
3740  get_depth(Surface s, XYZR d) -> double
3741  get_depth(Surface s, XYZ d) -> double
3742  """
3743  return _IMP_core.get_depth(*args)
3744 
3745 def get_distance(*args):
3746  """
3747  get_distance(XYZ a, XYZ b) -> double
3748  get_distance(XYZR a, XYZR b) -> double
3749  get_distance(Surface s, XYZR d) -> double
3750  get_distance(Surface s, XYZ d) -> double
3751  """
3752  return _IMP_core.get_distance(*args)
3753 class SurfaceGeometry(IMP.display.Geometry):
3754  """Proxy of C++ IMP::core::SurfaceGeometry class."""
3755 
3756  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
3757 
3758  def __init__(self, *args):
3759  """
3760  __init__(IMP::core::SurfaceGeometry self, std::string n) -> SurfaceGeometry
3761  __init__(IMP::core::SurfaceGeometry self) -> SurfaceGeometry
3762  __init__(IMP::core::SurfaceGeometry self, Surface s, std::string const n) -> SurfaceGeometry
3763  __init__(IMP::core::SurfaceGeometry self, Surface s) -> SurfaceGeometry
3764  __init__(IMP::core::SurfaceGeometry self, Surface s, Color c, std::string n) -> SurfaceGeometry
3765  __init__(IMP::core::SurfaceGeometry self, Surface s, Color c) -> SurfaceGeometry
3766  """
3767  this = _IMP_core.new_SurfaceGeometry(*args)
3768  try:
3769  self.this.append(this)
3770  except __builtin__.Exception:
3771  self.this = this
3772 
3773  def get_geometry(self):
3774  """get_geometry(SurfaceGeometry self) -> Surface"""
3775  return _IMP_core.SurfaceGeometry_get_geometry(self)
3776 
3777 
3778  def set_geometry(self, s):
3779  """set_geometry(SurfaceGeometry self, Surface s)"""
3780  return _IMP_core.SurfaceGeometry_set_geometry(self, s)
3781 
3782 
3783  def get_version_info(self):
3784  """get_version_info(SurfaceGeometry self) -> VersionInfo"""
3785  return _IMP_core.SurfaceGeometry_get_version_info(self)
3786 
3787 
3788  def __str__(self):
3789  """__str__(SurfaceGeometry self) -> std::string"""
3790  return _IMP_core.SurfaceGeometry___str__(self)
3791 
3792 
3793  def __repr__(self):
3794  """__repr__(SurfaceGeometry self) -> std::string"""
3795  return _IMP_core.SurfaceGeometry___repr__(self)
3796 
3797 
3798  @staticmethod
3799  def get_from(o):
3800  return _object_cast_to_SurfaceGeometry(o)
3801 
3802 SurfaceGeometry_swigregister = _IMP_core.SurfaceGeometry_swigregister
3803 SurfaceGeometry_swigregister(SurfaceGeometry)
3804 
3805 
3806 def create_geometry(*args):
3807  """
3808  create_geometry(Surface s, std::string name) -> SurfaceGeometry
3809  create_geometry(Surface s) -> SurfaceGeometry
3810  """
3811  return _IMP_core.create_geometry(*args)
3812 class SurfaceGeometryConstraint(IMP.Constraint):
3813  """Proxy of C++ IMP::core::SurfaceGeometryConstraint class."""
3814 
3815  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
3816 
3817  def __init__(self, s, g):
3818  """__init__(IMP::core::SurfaceGeometryConstraint self, Surface s, SurfaceGeometry g) -> SurfaceGeometryConstraint"""
3819  this = _IMP_core.new_SurfaceGeometryConstraint(s, g)
3820  try:
3821  self.this.append(this)
3822  except __builtin__.Exception:
3823  self.this = this
3824 
3825  def get_surface(self):
3826  """get_surface(SurfaceGeometryConstraint self) -> Surface"""
3827  return _IMP_core.SurfaceGeometryConstraint_get_surface(self)
3828 
3829 
3830  def get_geometry(self):
3831  """get_geometry(SurfaceGeometryConstraint self) -> SurfaceGeometry"""
3832  return _IMP_core.SurfaceGeometryConstraint_get_geometry(self)
3833 
3834 
3835  def do_get_inputs(self):
3836  """do_get_inputs(SurfaceGeometryConstraint self) -> IMP::ModelObjectsTemp"""
3837  return _IMP_core.SurfaceGeometryConstraint_do_get_inputs(self)
3838 
3839 
3840  def do_get_outputs(self):
3841  """do_get_outputs(SurfaceGeometryConstraint self) -> IMP::ModelObjectsTemp"""
3842  return _IMP_core.SurfaceGeometryConstraint_do_get_outputs(self)
3843 
3844 
3845  def get_version_info(self):
3846  """get_version_info(SurfaceGeometryConstraint self) -> VersionInfo"""
3847  return _IMP_core.SurfaceGeometryConstraint_get_version_info(self)
3848 
3849 
3850  def __str__(self):
3851  """__str__(SurfaceGeometryConstraint self) -> std::string"""
3852  return _IMP_core.SurfaceGeometryConstraint___str__(self)
3853 
3854 
3855  def __repr__(self):
3856  """__repr__(SurfaceGeometryConstraint self) -> std::string"""
3857  return _IMP_core.SurfaceGeometryConstraint___repr__(self)
3858 
3859 
3860  @staticmethod
3861  def get_from(o):
3862  return _object_cast_to_SurfaceGeometryConstraint(o)
3863 
3864 SurfaceGeometryConstraint_swigregister = _IMP_core.SurfaceGeometryConstraint_swigregister
3865 SurfaceGeometryConstraint_swigregister(SurfaceGeometryConstraint)
3866 
3867 
3869  """
3870  get_constrained_surface_geometry(Surface s, std::string name) -> SurfaceGeometry
3871  get_constrained_surface_geometry(Surface s) -> SurfaceGeometry
3872  """
3873  return _IMP_core.get_constrained_surface_geometry(*args)
3874 class LateralSurfaceConstraint(IMP.Constraint):
3875  """Proxy of C++ IMP::core::LateralSurfaceConstraint class."""
3876 
3877  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
3878 
3879  def __init__(self, s, d):
3880  """__init__(IMP::core::LateralSurfaceConstraint self, Surface s, XYZ d) -> LateralSurfaceConstraint"""
3881  this = _IMP_core.new_LateralSurfaceConstraint(s, d)
3882  try:
3883  self.this.append(this)
3884  except __builtin__.Exception:
3885  self.this = this
3886 
3887  def do_get_inputs(self):
3888  """do_get_inputs(LateralSurfaceConstraint self) -> IMP::ModelObjectsTemp"""
3889  return _IMP_core.LateralSurfaceConstraint_do_get_inputs(self)
3890 
3891 
3892  def do_get_outputs(self):
3893  """do_get_outputs(LateralSurfaceConstraint self) -> IMP::ModelObjectsTemp"""
3894  return _IMP_core.LateralSurfaceConstraint_do_get_outputs(self)
3895 
3896 
3897  def get_version_info(self):
3898  """get_version_info(LateralSurfaceConstraint self) -> VersionInfo"""
3899  return _IMP_core.LateralSurfaceConstraint_get_version_info(self)
3900 
3901 
3902  def __str__(self):
3903  """__str__(LateralSurfaceConstraint self) -> std::string"""
3904  return _IMP_core.LateralSurfaceConstraint___str__(self)
3905 
3906 
3907  def __repr__(self):
3908  """__repr__(LateralSurfaceConstraint self) -> std::string"""
3909  return _IMP_core.LateralSurfaceConstraint___repr__(self)
3910 
3911 
3912  @staticmethod
3913  def get_from(o):
3914  return _object_cast_to_LateralSurfaceConstraint(o)
3915 
3916 LateralSurfaceConstraint_swigregister = _IMP_core.LateralSurfaceConstraint_swigregister
3917 LateralSurfaceConstraint_swigregister(LateralSurfaceConstraint)
3918 
3919 class AngleTripletScore(IMP.TripletScore):
3920  """Proxy of C++ IMP::core::AngleTripletScore class."""
3921 
3922  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
3923 
3924  def __init__(self, f):
3925  """__init__(IMP::core::AngleTripletScore self, UnaryFunction f) -> AngleTripletScore"""
3926  this = _IMP_core.new_AngleTripletScore(f)
3927  try:
3928  self.this.append(this)
3929  except __builtin__.Exception:
3930  self.this = this
3931 
3932  def do_get_inputs(self, m, pis):
3933  """do_get_inputs(AngleTripletScore self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
3934  return _IMP_core.AngleTripletScore_do_get_inputs(self, m, pis)
3935 
3936 
3937  def get_version_info(self):
3938  """get_version_info(AngleTripletScore self) -> VersionInfo"""
3939  return _IMP_core.AngleTripletScore_get_version_info(self)
3940 
3941 
3942  def __str__(self):
3943  """__str__(AngleTripletScore self) -> std::string"""
3944  return _IMP_core.AngleTripletScore___str__(self)
3945 
3946 
3947  def __repr__(self):
3948  """__repr__(AngleTripletScore self) -> std::string"""
3949  return _IMP_core.AngleTripletScore___repr__(self)
3950 
3951 
3952  @staticmethod
3953  def get_from(o):
3954  return _object_cast_to_AngleTripletScore(o)
3955 
3956 AngleTripletScore_swigregister = _IMP_core.AngleTripletScore_swigregister
3957 AngleTripletScore_swigregister(AngleTripletScore)
3958 
3959 class BallMover(MonteCarloMover):
3960  """Proxy of C++ IMP::core::BallMover class."""
3961 
3962  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
3963 
3964  def __init__(self, *args):
3965  """
3966  __init__(IMP::core::BallMover self, Model m, ParticleIndex pi, IMP::FloatKeys const & vars, double radius) -> BallMover
3967  __init__(IMP::core::BallMover self, Model m, ParticleIndex pi, double radius) -> BallMover
3968  __init__(IMP::core::BallMover self, Model m, IMP::ParticleIndexes const & pis, IMP::FloatKeys const & vars, IMP::Float radius) -> BallMover
3969  __init__(IMP::core::BallMover self, Model m, IMP::ParticleIndexes const & pis, IMP::Float radius) -> BallMover
3970  """
3971  this = _IMP_core.new_BallMover(*args)
3972  try:
3973  self.this.append(this)
3974  except __builtin__.Exception:
3975  self.this = this
3976 
3977  def set_radius(self, radius):
3978  """set_radius(BallMover self, IMP::Float radius)"""
3979  return _IMP_core.BallMover_set_radius(self, radius)
3980 
3981 
3982  def get_radius(self):
3983  """get_radius(BallMover self) -> IMP::Float"""
3984  return _IMP_core.BallMover_get_radius(self)
3985 
3986 
3987  def get_version_info(self):
3988  """get_version_info(BallMover self) -> VersionInfo"""
3989  return _IMP_core.BallMover_get_version_info(self)
3990 
3991 
3992  def __str__(self):
3993  """__str__(BallMover self) -> std::string"""
3994  return _IMP_core.BallMover___str__(self)
3995 
3996 
3997  def __repr__(self):
3998  """__repr__(BallMover self) -> std::string"""
3999  return _IMP_core.BallMover___repr__(self)
4000 
4001 
4002  @staticmethod
4003  def get_from(o):
4004  return _object_cast_to_BallMover(o)
4005 
4006 BallMover_swigregister = _IMP_core.BallMover_swigregister
4007 BallMover_swigregister(BallMover)
4008 
4009 class SerialMover(MonteCarloMover):
4010  """Proxy of C++ IMP::core::SerialMover class."""
4011 
4012  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
4013 
4014  def __init__(self, mvs):
4015  """__init__(IMP::core::SerialMover self, IMP::core::MonteCarloMoversTemp const & mvs) -> SerialMover"""
4016  this = _IMP_core.new_SerialMover(mvs)
4017  try:
4018  self.this.append(this)
4019  except __builtin__.Exception:
4020  self.this = this
4021 
4022  def get_movers(self):
4023  """get_movers(SerialMover self) -> IMP::core::MonteCarloMovers const &"""
4024  return _IMP_core.SerialMover_get_movers(self)
4025 
4026 
4027  def get_version_info(self):
4028  """get_version_info(SerialMover self) -> VersionInfo"""
4029  return _IMP_core.SerialMover_get_version_info(self)
4030 
4031 
4032  def __str__(self):
4033  """__str__(SerialMover self) -> std::string"""
4034  return _IMP_core.SerialMover___str__(self)
4035 
4036 
4037  def __repr__(self):
4038  """__repr__(SerialMover self) -> std::string"""
4039  return _IMP_core.SerialMover___repr__(self)
4040 
4041 
4042  @staticmethod
4043  def get_from(o):
4044  return _object_cast_to_SerialMover(o)
4045 
4046 SerialMover_swigregister = _IMP_core.SerialMover_swigregister
4047 SerialMover_swigregister(SerialMover)
4048 
4049 class SubsetMover(MonteCarloMover):
4050  """Proxy of C++ IMP::core::SubsetMover class."""
4051 
4052  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
4053 
4054  def __init__(self, mvs, n):
4055  """__init__(IMP::core::SubsetMover self, IMP::core::MonteCarloMoversTemp const & mvs, unsigned int n) -> SubsetMover"""
4056  this = _IMP_core.new_SubsetMover(mvs, n)
4057  try:
4058  self.this.append(this)
4059  except __builtin__.Exception:
4060  self.this = this
4061 
4062  def get_movers(self):
4063  """get_movers(SubsetMover self) -> IMP::core::MonteCarloMovers const &"""
4064  return _IMP_core.SubsetMover_get_movers(self)
4065 
4066 
4067  def get_subset_size(self):
4068  """get_subset_size(SubsetMover self) -> unsigned int"""
4069  return _IMP_core.SubsetMover_get_subset_size(self)
4070 
4071 
4072  def get_version_info(self):
4073  """get_version_info(SubsetMover self) -> VersionInfo"""
4074  return _IMP_core.SubsetMover_get_version_info(self)
4075 
4076 
4077  def __str__(self):
4078  """__str__(SubsetMover self) -> std::string"""
4079  return _IMP_core.SubsetMover___str__(self)
4080 
4081 
4082  def __repr__(self):
4083  """__repr__(SubsetMover self) -> std::string"""
4084  return _IMP_core.SubsetMover___repr__(self)
4085 
4086 
4087  @staticmethod
4088  def get_from(o):
4089  return _object_cast_to_SubsetMover(o)
4090 
4091 SubsetMover_swigregister = _IMP_core.SubsetMover_swigregister
4092 SubsetMover_swigregister(SubsetMover)
4093 
4094 class DirectionMover(MonteCarloMover):
4095  """Proxy of C++ IMP::core::DirectionMover class."""
4096 
4097  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
4098 
4099  def __init__(self, *args):
4100  """
4101  __init__(IMP::core::DirectionMover self, Model m, ParticleIndex pi, IMP::Float max_rotation, IMP::Float reflect_probability) -> DirectionMover
4102  __init__(IMP::core::DirectionMover self, Direction d, IMP::Float max_rotation, IMP::Float reflect_probability) -> DirectionMover
4103  """
4104  this = _IMP_core.new_DirectionMover(*args)
4105  try:
4106  self.this.append(this)
4107  except __builtin__.Exception:
4108  self.this = this
4109 
4110  def set_maximum_rotation(self, mr):
4111  """set_maximum_rotation(DirectionMover self, IMP::Float mr)"""
4112  return _IMP_core.DirectionMover_set_maximum_rotation(self, mr)
4113 
4114 
4115  def set_reflect_probability(self, rp):
4116  """set_reflect_probability(DirectionMover self, IMP::Float rp)"""
4117  return _IMP_core.DirectionMover_set_reflect_probability(self, rp)
4118 
4119 
4120  def get_maximum_rotation(self):
4121  """get_maximum_rotation(DirectionMover self) -> IMP::Float"""
4122  return _IMP_core.DirectionMover_get_maximum_rotation(self)
4123 
4124 
4125  def get_reflect_probability(self):
4126  """get_reflect_probability(DirectionMover self) -> IMP::Float"""
4127  return _IMP_core.DirectionMover_get_reflect_probability(self)
4128 
4129 
4130  def get_direction(self):
4131  """get_direction(DirectionMover self) -> Direction"""
4132  return _IMP_core.DirectionMover_get_direction(self)
4133 
4134 
4135  def get_version_info(self):
4136  """get_version_info(DirectionMover self) -> VersionInfo"""
4137  return _IMP_core.DirectionMover_get_version_info(self)
4138 
4139 
4140  def __str__(self):
4141  """__str__(DirectionMover self) -> std::string"""
4142  return _IMP_core.DirectionMover___str__(self)
4143 
4144 
4145  def __repr__(self):
4146  """__repr__(DirectionMover self) -> std::string"""
4147  return _IMP_core.DirectionMover___repr__(self)
4148 
4149 
4150  @staticmethod
4151  def get_from(o):
4152  return _object_cast_to_DirectionMover(o)
4153 
4154 DirectionMover_swigregister = _IMP_core.DirectionMover_swigregister
4155 DirectionMover_swigregister(DirectionMover)
4156 
4157 class SurfaceMover(MonteCarloMover):
4158  """Proxy of C++ IMP::core::SurfaceMover class."""
4159 
4160  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
4161 
4162  def __init__(self, *args):
4163  """
4164  __init__(IMP::core::SurfaceMover self, Model m, ParticleIndex pi, IMP::Float max_translation, IMP::Float max_rotation, IMP::Float reflect_probability) -> SurfaceMover
4165  __init__(IMP::core::SurfaceMover self, Surface s, IMP::Float max_translation, IMP::Float max_rotation, IMP::Float reflect_probability) -> SurfaceMover
4166  """
4167  this = _IMP_core.new_SurfaceMover(*args)
4168  try:
4169  self.this.append(this)
4170  except __builtin__.Exception:
4171  self.this = this
4172 
4173  def set_maximum_translation(self, mt):
4174  """set_maximum_translation(SurfaceMover self, IMP::Float mt)"""
4175  return _IMP_core.SurfaceMover_set_maximum_translation(self, mt)
4176 
4177 
4178  def set_maximum_rotation(self, mr):
4179  """set_maximum_rotation(SurfaceMover self, IMP::Float mr)"""
4180  return _IMP_core.SurfaceMover_set_maximum_rotation(self, mr)
4181 
4182 
4183  def set_reflect_probability(self, rp):
4184  """set_reflect_probability(SurfaceMover self, IMP::Float rp)"""
4185  return _IMP_core.SurfaceMover_set_reflect_probability(self, rp)
4186 
4187 
4188  def get_maximum_translation(self):
4189  """get_maximum_translation(SurfaceMover self) -> IMP::Float"""
4190  return _IMP_core.SurfaceMover_get_maximum_translation(self)
4191 
4192 
4193  def get_maximum_rotation(self):
4194  """get_maximum_rotation(SurfaceMover self) -> IMP::Float"""
4195  return _IMP_core.SurfaceMover_get_maximum_rotation(self)
4196 
4197 
4198  def get_reflect_probability(self):
4199  """get_reflect_probability(SurfaceMover self) -> IMP::Float"""
4200  return _IMP_core.SurfaceMover_get_reflect_probability(self)
4201 
4202 
4203  def get_surface(self):
4204  """get_surface(SurfaceMover self) -> Surface"""
4205  return _IMP_core.SurfaceMover_get_surface(self)
4206 
4207 
4208  def get_version_info(self):
4209  """get_version_info(SurfaceMover self) -> VersionInfo"""
4210  return _IMP_core.SurfaceMover_get_version_info(self)
4211 
4212 
4213  def __str__(self):
4214  """__str__(SurfaceMover self) -> std::string"""
4215  return _IMP_core.SurfaceMover___str__(self)
4216 
4217 
4218  def __repr__(self):
4219  """__repr__(SurfaceMover self) -> std::string"""
4220  return _IMP_core.SurfaceMover___repr__(self)
4221 
4222 
4223  @staticmethod
4224  def get_from(o):
4225  return _object_cast_to_SurfaceMover(o)
4226 
4227 SurfaceMover_swigregister = _IMP_core.SurfaceMover_swigregister
4228 SurfaceMover_swigregister(SurfaceMover)
4229 
4230 class BoxSweepClosePairsFinder(ClosePairsFinder):
4231  """Proxy of C++ IMP::core::BoxSweepClosePairsFinder class."""
4232 
4233  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
4234 
4235  def __init__(self):
4236  """__init__(IMP::core::BoxSweepClosePairsFinder self) -> BoxSweepClosePairsFinder"""
4237  this = _IMP_core.new_BoxSweepClosePairsFinder()
4238  try:
4239  self.this.append(this)
4240  except __builtin__.Exception:
4241  self.this = this
4242 
4243  def get_close_pairs(self, *args):
4244  """
4245  get_close_pairs(BoxSweepClosePairsFinder self, IMP::algebra::BoundingBox3Ds const & bbs) -> IMP::IntPairs
4246  get_close_pairs(BoxSweepClosePairsFinder self, IMP::algebra::BoundingBox3Ds const & bas, IMP::algebra::BoundingBox3Ds const & bbs) -> IMP::IntPairs
4247  get_close_pairs(BoxSweepClosePairsFinder self, Model m, IMP::ParticleIndexes const & pc) -> IMP::ParticleIndexPairs
4248  get_close_pairs(BoxSweepClosePairsFinder self, Model m, IMP::ParticleIndexes const & pca, IMP::ParticleIndexes const & pcb) -> IMP::ParticleIndexPairs
4249  """
4250  return _IMP_core.BoxSweepClosePairsFinder_get_close_pairs(self, *args)
4251 
4252 
4253  def do_get_inputs(self, m, pis):
4254  """do_get_inputs(BoxSweepClosePairsFinder self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
4255  return _IMP_core.BoxSweepClosePairsFinder_do_get_inputs(self, m, pis)
4256 
4257 
4258  def get_version_info(self):
4259  """get_version_info(BoxSweepClosePairsFinder self) -> VersionInfo"""
4260  return _IMP_core.BoxSweepClosePairsFinder_get_version_info(self)
4261 
4262 
4263  def __str__(self):
4264  """__str__(BoxSweepClosePairsFinder self) -> std::string"""
4265  return _IMP_core.BoxSweepClosePairsFinder___str__(self)
4266 
4267 
4268  def __repr__(self):
4269  """__repr__(BoxSweepClosePairsFinder self) -> std::string"""
4270  return _IMP_core.BoxSweepClosePairsFinder___repr__(self)
4271 
4272 
4273  @staticmethod
4274  def get_from(o):
4275  return _object_cast_to_BoxSweepClosePairsFinder(o)
4276 
4277 BoxSweepClosePairsFinder_swigregister = _IMP_core.BoxSweepClosePairsFinder_swigregister
4278 BoxSweepClosePairsFinder_swigregister(BoxSweepClosePairsFinder)
4279 
4280 class CentroidOfRefined(IMP.SingletonModifier):
4281  """Proxy of C++ IMP::core::CentroidOfRefined class."""
4282 
4283  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
4284 
4285  def __init__(self, *args):
4286  """
4287  __init__(IMP::core::CentroidOfRefined self, Refiner r, FloatKey weight, IMP::FloatKeys ks) -> CentroidOfRefined
4288  __init__(IMP::core::CentroidOfRefined self, Refiner r, FloatKey weight) -> CentroidOfRefined
4289  __init__(IMP::core::CentroidOfRefined self, Refiner r) -> CentroidOfRefined
4290  """
4291  this = _IMP_core.new_CentroidOfRefined(*args)
4292  try:
4293  self.this.append(this)
4294  except __builtin__.Exception:
4295  self.this = this
4296 
4297  def do_get_inputs(self, m, pis):
4298  """do_get_inputs(CentroidOfRefined self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
4299  return _IMP_core.CentroidOfRefined_do_get_inputs(self, m, pis)
4300 
4301 
4302  def do_get_outputs(self, m, pis):
4303  """do_get_outputs(CentroidOfRefined self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
4304  return _IMP_core.CentroidOfRefined_do_get_outputs(self, m, pis)
4305 
4306 
4307  def get_version_info(self):
4308  """get_version_info(CentroidOfRefined self) -> VersionInfo"""
4309  return _IMP_core.CentroidOfRefined_get_version_info(self)
4310 
4311 
4312  def __str__(self):
4313  """__str__(CentroidOfRefined self) -> std::string"""
4314  return _IMP_core.CentroidOfRefined___str__(self)
4315 
4316 
4317  def __repr__(self):
4318  """__repr__(CentroidOfRefined self) -> std::string"""
4319  return _IMP_core.CentroidOfRefined___repr__(self)
4320 
4321 
4322  @staticmethod
4323  def get_from(o):
4324  return _object_cast_to_CentroidOfRefined(o)
4325 
4326 CentroidOfRefined_swigregister = _IMP_core.CentroidOfRefined_swigregister
4327 CentroidOfRefined_swigregister(CentroidOfRefined)
4328 
4329 class Centroid(XYZ):
4330  """Proxy of C++ IMP::core::Centroid class."""
4331 
4332  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
4333 
4334  def get_constraint(self):
4335  """get_constraint(Centroid self) -> Constraint"""
4336  return _IMP_core.Centroid_get_constraint(self)
4337 
4338 
4339  def __init__(self, *args):
4340  """
4341  __init__(IMP::core::Centroid self) -> Centroid
4342  __init__(IMP::core::Centroid self, Model m, ParticleIndex id) -> Centroid
4343  __init__(IMP::core::Centroid self, _ParticleAdaptor d) -> Centroid
4344  """
4345  this = _IMP_core.new_Centroid(*args)
4346  try:
4347  self.this.append(this)
4348  except __builtin__.Exception:
4349  self.this = this
4350 
4351  def show(self, *args):
4352  """
4353  show(Centroid self, _ostream out)
4354  show(Centroid self)
4355  """
4356  return _IMP_core.Centroid_show(self, *args)
4357 
4358 
4359  def setup_particle(*args):
4360  """
4361  setup_particle(Model m, ParticleIndex pi, _ParticleIndexesAdaptor members) -> Centroid
4362  setup_particle(_ParticleAdaptor decorator, _ParticleIndexesAdaptor members) -> Centroid
4363  setup_particle(Model m, ParticleIndex pi, Refiner refiner) -> Centroid
4364  setup_particle(_ParticleAdaptor decorator, Refiner refiner) -> Centroid
4365  """
4366  return _IMP_core.Centroid_setup_particle(*args)
4367 
4368  setup_particle = staticmethod(setup_particle)
4369 
4370  def get_is_setup(*args):
4371  """
4372  get_is_setup(_ParticleAdaptor p) -> bool
4373  get_is_setup(Model m, ParticleIndex pi) -> bool
4374  """
4375  return _IMP_core.Centroid_get_is_setup(*args)
4376 
4377  get_is_setup = staticmethod(get_is_setup)
4378 
4379  def add_attribute(self, *args):
4380  """
4381  add_attribute(Centroid self, FloatKey k, IMP::Float v, bool opt)
4382  add_attribute(Centroid self, FloatKey a0, IMP::Float a1)
4383  add_attribute(Centroid self, IntKey a0, IMP::Int a1)
4384  add_attribute(Centroid self, StringKey a0, IMP::String a1)
4385  add_attribute(Centroid self, ParticleIndexKey a0, Particle a1)
4386  add_attribute(Centroid self, ObjectKey a0, Object a1)
4387  """
4388  return _IMP_core.Centroid_add_attribute(self, *args)
4389 
4390 
4391  def get_value(self, *args):
4392  """
4393  get_value(Centroid self, FloatKey a0) -> IMP::Float
4394  get_value(Centroid self, IntKey a0) -> IMP::Int
4395  get_value(Centroid self, StringKey a0) -> IMP::String
4396  get_value(Centroid self, ParticleIndexKey a0) -> Particle
4397  get_value(Centroid self, ObjectKey a0) -> Object
4398  """
4399  return _IMP_core.Centroid_get_value(self, *args)
4400 
4401 
4402  def set_value(self, *args):
4403  """
4404  set_value(Centroid self, FloatKey a0, IMP::Float a1)
4405  set_value(Centroid self, IntKey a0, IMP::Int a1)
4406  set_value(Centroid self, StringKey a0, IMP::String a1)
4407  set_value(Centroid self, ParticleIndexKey a0, Particle a1)
4408  set_value(Centroid self, ObjectKey a0, Object a1)
4409  """
4410  return _IMP_core.Centroid_set_value(self, *args)
4411 
4412 
4413  def remove_attribute(self, *args):
4414  """
4415  remove_attribute(Centroid self, FloatKey a0)
4416  remove_attribute(Centroid self, IntKey a0)
4417  remove_attribute(Centroid self, StringKey a0)
4418  remove_attribute(Centroid self, ParticleIndexKey a0)
4419  remove_attribute(Centroid self, ObjectKey a0)
4420  """
4421  return _IMP_core.Centroid_remove_attribute(self, *args)
4422 
4423 
4424  def has_attribute(self, *args):
4425  """
4426  has_attribute(Centroid self, FloatKey a0) -> bool
4427  has_attribute(Centroid self, IntKey a0) -> bool
4428  has_attribute(Centroid self, StringKey a0) -> bool
4429  has_attribute(Centroid self, ParticleIndexKey a0) -> bool
4430  has_attribute(Centroid self, ObjectKey a0) -> bool
4431  """
4432  return _IMP_core.Centroid_has_attribute(self, *args)
4433 
4434 
4435  def get_derivative(self, a0):
4436  """get_derivative(Centroid self, FloatKey a0) -> double"""
4437  return _IMP_core.Centroid_get_derivative(self, a0)
4438 
4439 
4440  def get_name(self):
4441  """get_name(Centroid self) -> std::string"""
4442  return _IMP_core.Centroid_get_name(self)
4443 
4444 
4445  def clear_caches(self):
4446  """clear_caches(Centroid self)"""
4447  return _IMP_core.Centroid_clear_caches(self)
4448 
4449 
4450  def set_name(self, a0):
4451  """set_name(Centroid self, std::string a0)"""
4452  return _IMP_core.Centroid_set_name(self, a0)
4453 
4454 
4455  def set_check_level(self, a0):
4456  """set_check_level(Centroid self, IMP::CheckLevel a0)"""
4457  return _IMP_core.Centroid_set_check_level(self, a0)
4458 
4459 
4460  def add_to_derivative(self, a0, a1, a2):
4461  """add_to_derivative(Centroid self, FloatKey a0, double a1, DerivativeAccumulator a2)"""
4462  return _IMP_core.Centroid_add_to_derivative(self, a0, a1, a2)
4463 
4464 
4465  def set_is_optimized(self, a0, a1):
4466  """set_is_optimized(Centroid self, FloatKey a0, bool a1)"""
4467  return _IMP_core.Centroid_set_is_optimized(self, a0, a1)
4468 
4469 
4470  def get_is_optimized(self, a0):
4471  """get_is_optimized(Centroid self, FloatKey a0) -> bool"""
4472  return _IMP_core.Centroid_get_is_optimized(self, a0)
4473 
4474 
4475  def get_check_level(self):
4476  """get_check_level(Centroid self) -> IMP::CheckLevel"""
4477  return _IMP_core.Centroid_get_check_level(self)
4478 
4479 
4480  def __eq__(self, *args):
4481  """
4482  __eq__(Centroid self, Centroid o) -> bool
4483  __eq__(Centroid self, Particle d) -> bool
4484  """
4485  return _IMP_core.Centroid___eq__(self, *args)
4486 
4487 
4488  def __ne__(self, *args):
4489  """
4490  __ne__(Centroid self, Centroid o) -> bool
4491  __ne__(Centroid self, Particle d) -> bool
4492  """
4493  return _IMP_core.Centroid___ne__(self, *args)
4494 
4495 
4496  def __le__(self, *args):
4497  """
4498  __le__(Centroid self, Centroid o) -> bool
4499  __le__(Centroid self, Particle d) -> bool
4500  """
4501  return _IMP_core.Centroid___le__(self, *args)
4502 
4503 
4504  def __lt__(self, *args):
4505  """
4506  __lt__(Centroid self, Centroid o) -> bool
4507  __lt__(Centroid self, Particle d) -> bool
4508  """
4509  return _IMP_core.Centroid___lt__(self, *args)
4510 
4511 
4512  def __ge__(self, *args):
4513  """
4514  __ge__(Centroid self, Centroid o) -> bool
4515  __ge__(Centroid self, Particle d) -> bool
4516  """
4517  return _IMP_core.Centroid___ge__(self, *args)
4518 
4519 
4520  def __gt__(self, *args):
4521  """
4522  __gt__(Centroid self, Centroid o) -> bool
4523  __gt__(Centroid self, Particle d) -> bool
4524  """
4525  return _IMP_core.Centroid___gt__(self, *args)
4526 
4527 
4528  def __hash__(self):
4529  """__hash__(Centroid self) -> std::size_t"""
4530  return _IMP_core.Centroid___hash__(self)
4531 
4532 
4533  def __str__(self):
4534  """__str__(Centroid self) -> std::string"""
4535  return _IMP_core.Centroid___str__(self)
4536 
4537 
4538  def __repr__(self):
4539  """__repr__(Centroid self) -> std::string"""
4540  return _IMP_core.Centroid___repr__(self)
4541 
4542  __swig_destroy__ = _IMP_core.delete_Centroid
4543  __del__ = lambda self: None
4544 Centroid_swigregister = _IMP_core.Centroid_swigregister
4545 Centroid_swigregister(Centroid)
4546 
4547 def Centroid_setup_particle(*args):
4548  """
4549  setup_particle(Model m, ParticleIndex pi, _ParticleIndexesAdaptor members) -> Centroid
4550  setup_particle(_ParticleAdaptor decorator, _ParticleIndexesAdaptor members) -> Centroid
4551  setup_particle(Model m, ParticleIndex pi, Refiner refiner) -> Centroid
4552  Centroid_setup_particle(_ParticleAdaptor decorator, Refiner refiner) -> Centroid
4553  """
4554  return _IMP_core.Centroid_setup_particle(*args)
4555 
4556 def Centroid_get_is_setup(*args):
4557  """
4558  get_is_setup(_ParticleAdaptor p) -> bool
4559  Centroid_get_is_setup(Model m, ParticleIndex pi) -> bool
4560  """
4561  return _IMP_core.Centroid_get_is_setup(*args)
4562 
4563 class ChecksScoreState(IMP.ScoreState):
4564  """Proxy of C++ IMP::core::ChecksScoreState class."""
4565 
4566  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
4567 
4568  def __init__(self, m, probability):
4569  """__init__(IMP::core::ChecksScoreState self, Model m, double probability) -> ChecksScoreState"""
4570  this = _IMP_core.new_ChecksScoreState(m, probability)
4571  try:
4572  self.this.append(this)
4573  except __builtin__.Exception:
4574  self.this = this
4575 
4576  def get_number_of_checked(self):
4577  """get_number_of_checked(ChecksScoreState self) -> unsigned int"""
4578  return _IMP_core.ChecksScoreState_get_number_of_checked(self)
4579 
4580 
4581  def do_before_evaluate(self):
4582  """do_before_evaluate(ChecksScoreState self)"""
4583  return _IMP_core.ChecksScoreState_do_before_evaluate(self)
4584 
4585 
4586  def do_after_evaluate(self, da):
4587  """do_after_evaluate(ChecksScoreState self, DerivativeAccumulator da)"""
4588  return _IMP_core.ChecksScoreState_do_after_evaluate(self, da)
4589 
4590 
4591  def do_get_outputs(self):
4592  """do_get_outputs(ChecksScoreState self) -> IMP::ModelObjectsTemp"""
4593  return _IMP_core.ChecksScoreState_do_get_outputs(self)
4594 
4595 
4596  def do_get_inputs(self):
4597  """do_get_inputs(ChecksScoreState self) -> IMP::ModelObjectsTemp"""
4598  return _IMP_core.ChecksScoreState_do_get_inputs(self)
4599 
4600 
4601  def get_version_info(self):
4602  """get_version_info(ChecksScoreState self) -> VersionInfo"""
4603  return _IMP_core.ChecksScoreState_get_version_info(self)
4604 
4605 
4606  def __str__(self):
4607  """__str__(ChecksScoreState self) -> std::string"""
4608  return _IMP_core.ChecksScoreState___str__(self)
4609 
4610 
4611  def __repr__(self):
4612  """__repr__(ChecksScoreState self) -> std::string"""
4613  return _IMP_core.ChecksScoreState___repr__(self)
4614 
4615 
4616  @staticmethod
4617  def get_from(o):
4618  return _object_cast_to_ChecksScoreState(o)
4619 
4620 ChecksScoreState_swigregister = _IMP_core.ChecksScoreState_swigregister
4621 ChecksScoreState_swigregister(ChecksScoreState)
4622 
4623 class ChildrenRefiner(IMP.Refiner):
4624  """Proxy of C++ IMP::core::ChildrenRefiner class."""
4625 
4626  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
4627 
4628  def __init__(self, tr):
4629  """__init__(IMP::core::ChildrenRefiner self, HierarchyTraits tr) -> ChildrenRefiner"""
4630  this = _IMP_core.new_ChildrenRefiner(tr)
4631  try:
4632  self.this.append(this)
4633  except __builtin__.Exception:
4634  self.this = this
4635 
4636  def do_get_inputs(self, m, pis):
4637  """do_get_inputs(ChildrenRefiner self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
4638  return _IMP_core.ChildrenRefiner_do_get_inputs(self, m, pis)
4639 
4640 
4641  def get_version_info(self):
4642  """get_version_info(ChildrenRefiner self) -> VersionInfo"""
4643  return _IMP_core.ChildrenRefiner_get_version_info(self)
4644 
4645 
4646  def __str__(self):
4647  """__str__(ChildrenRefiner self) -> std::string"""
4648  return _IMP_core.ChildrenRefiner___str__(self)
4649 
4650 
4651  def __repr__(self):
4652  """__repr__(ChildrenRefiner self) -> std::string"""
4653  return _IMP_core.ChildrenRefiner___repr__(self)
4654 
4655 
4656  @staticmethod
4657  def get_from(o):
4658  return _object_cast_to_ChildrenRefiner(o)
4659 
4660 ChildrenRefiner_swigregister = _IMP_core.ChildrenRefiner_swigregister
4661 ChildrenRefiner_swigregister(ChildrenRefiner)
4662 
4663 class ClosedCubicSpline(IMP.UnaryFunction):
4664  """Proxy of C++ IMP::core::ClosedCubicSpline class."""
4665 
4666  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
4667 
4668  def __init__(self, values, minrange, spacing):
4669  """__init__(IMP::core::ClosedCubicSpline self, IMP::Floats const & values, double minrange, double spacing) -> ClosedCubicSpline"""
4670  this = _IMP_core.new_ClosedCubicSpline(values, minrange, spacing)
4671  try:
4672  self.this.append(this)
4673  except __builtin__.Exception:
4674  self.this = this
4675 
4676  def get_version_info(self):
4677  """get_version_info(ClosedCubicSpline self) -> VersionInfo"""
4678  return _IMP_core.ClosedCubicSpline_get_version_info(self)
4679 
4680 
4681  def do_show(self, out):
4682  """do_show(ClosedCubicSpline self, _ostream out)"""
4683  return _IMP_core.ClosedCubicSpline_do_show(self, out)
4684 
4685 
4686  def __str__(self):
4687  """__str__(ClosedCubicSpline self) -> std::string"""
4688  return _IMP_core.ClosedCubicSpline___str__(self)
4689 
4690 
4691  def __repr__(self):
4692  """__repr__(ClosedCubicSpline self) -> std::string"""
4693  return _IMP_core.ClosedCubicSpline___repr__(self)
4694 
4695 
4696  @staticmethod
4697  def get_from(o):
4698  return _object_cast_to_ClosedCubicSpline(o)
4699 
4700 ClosedCubicSpline_swigregister = _IMP_core.ClosedCubicSpline_swigregister
4701 ClosedCubicSpline_swigregister(ClosedCubicSpline)
4702 
4703 class KClosePairsPairScore(IMP.PairScore):
4704  """Proxy of C++ IMP::core::KClosePairsPairScore class."""
4705 
4706  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
4707 
4708  def __init__(self, f, r, k=1):
4709  """
4710  __init__(IMP::core::KClosePairsPairScore self, PairScore f, Refiner r, int k=1) -> KClosePairsPairScore
4711  __init__(IMP::core::KClosePairsPairScore self, PairScore f, Refiner r) -> KClosePairsPairScore
4712  """
4713  this = _IMP_core.new_KClosePairsPairScore(f, r, k)
4714  try:
4715  self.this.append(this)
4716  except __builtin__.Exception:
4717  self.this = this
4718 
4719  def get_close_pairs(self, pp):
4720  """get_close_pairs(KClosePairsPairScore self, IMP::ParticlePair const & pp) -> IMP::ParticlePairsTemp"""
4721  return _IMP_core.KClosePairsPairScore_get_close_pairs(self, pp)
4722 
4723 
4724  def create_current_decomposition(self, m, vt):
4725  """create_current_decomposition(KClosePairsPairScore self, Model m, IMP::ParticleIndexPair const & vt) -> IMP::Restraints"""
4726  return _IMP_core.KClosePairsPairScore_create_current_decomposition(self, m, vt)
4727 
4728 
4729  def do_get_inputs(self, m, pis):
4730  """do_get_inputs(KClosePairsPairScore self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
4731  return _IMP_core.KClosePairsPairScore_do_get_inputs(self, m, pis)
4732 
4733 
4734  def get_version_info(self):
4735  """get_version_info(KClosePairsPairScore self) -> VersionInfo"""
4736  return _IMP_core.KClosePairsPairScore_get_version_info(self)
4737 
4738 
4739  def __str__(self):
4740  """__str__(KClosePairsPairScore self) -> std::string"""
4741  return _IMP_core.KClosePairsPairScore___str__(self)
4742 
4743 
4744  def __repr__(self):
4745  """__repr__(KClosePairsPairScore self) -> std::string"""
4746  return _IMP_core.KClosePairsPairScore___repr__(self)
4747 
4748 
4749  @staticmethod
4750  def get_from(o):
4751  return _object_cast_to_KClosePairsPairScore(o)
4752 
4753 KClosePairsPairScore_swigregister = _IMP_core.KClosePairsPairScore_swigregister
4754 KClosePairsPairScore_swigregister(KClosePairsPairScore)
4755 
4756 class ClosePairsPairScore(IMP.PairScore):
4757  """Proxy of C++ IMP::core::ClosePairsPairScore class."""
4758 
4759  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
4760 
4761  def __init__(self, f, r, max_distance):
4762  """__init__(IMP::core::ClosePairsPairScore self, PairScore f, Refiner r, IMP::Float max_distance) -> ClosePairsPairScore"""
4763  this = _IMP_core.new_ClosePairsPairScore(f, r, max_distance)
4764  try:
4765  self.this.append(this)
4766  except __builtin__.Exception:
4767  self.this = this
4768 
4769  def get_close_pairs(self, pp):
4770  """get_close_pairs(ClosePairsPairScore self, IMP::ParticlePair const & pp) -> IMP::ParticlePairsTemp"""
4771  return _IMP_core.ClosePairsPairScore_get_close_pairs(self, pp)
4772 
4773 
4774  def create_current_decomposition(self, m, vt):
4775  """create_current_decomposition(ClosePairsPairScore self, Model m, IMP::ParticleIndexPair const & vt) -> IMP::Restraints"""
4776  return _IMP_core.ClosePairsPairScore_create_current_decomposition(self, m, vt)
4777 
4778 
4779  def do_get_inputs(self, m, pis):
4780  """do_get_inputs(ClosePairsPairScore self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
4781  return _IMP_core.ClosePairsPairScore_do_get_inputs(self, m, pis)
4782 
4783 
4784  def get_version_info(self):
4785  """get_version_info(ClosePairsPairScore self) -> VersionInfo"""
4786  return _IMP_core.ClosePairsPairScore_get_version_info(self)
4787 
4788 
4789  def __str__(self):
4790  """__str__(ClosePairsPairScore self) -> std::string"""
4791  return _IMP_core.ClosePairsPairScore___str__(self)
4792 
4793 
4794  def __repr__(self):
4795  """__repr__(ClosePairsPairScore self) -> std::string"""
4796  return _IMP_core.ClosePairsPairScore___repr__(self)
4797 
4798 
4799  @staticmethod
4800  def get_from(o):
4801  return _object_cast_to_ClosePairsPairScore(o)
4802 
4803 ClosePairsPairScore_swigregister = _IMP_core.ClosePairsPairScore_swigregister
4804 ClosePairsPairScore_swigregister(ClosePairsPairScore)
4805 
4806 class ConjugateGradients(IMP.AttributeOptimizer):
4807  """Proxy of C++ IMP::core::ConjugateGradients class."""
4808 
4809  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
4810 
4811  def __init__(self, *args):
4812  """
4813  __init__(IMP::core::ConjugateGradients self, Model m, std::string name) -> ConjugateGradients
4814  __init__(IMP::core::ConjugateGradients self, Model m) -> ConjugateGradients
4815  """
4816  this = _IMP_core.new_ConjugateGradients(*args)
4817  try:
4818  self.this.append(this)
4819  except __builtin__.Exception:
4820  self.this = this
4821 
4822  def set_gradient_threshold(self, t):
4823  """set_gradient_threshold(ConjugateGradients self, IMP::Float t)"""
4824  return _IMP_core.ConjugateGradients_set_gradient_threshold(self, t)
4825 
4826 
4827  def set_threshold(self, t):
4828  """set_threshold(ConjugateGradients self, IMP::Float t)"""
4829  return _IMP_core.ConjugateGradients_set_threshold(self, t)
4830 
4831 
4832  def set_max_change(self, t):
4833  """set_max_change(ConjugateGradients self, IMP::Float t)"""
4834  return _IMP_core.ConjugateGradients_set_max_change(self, t)
4835 
4836 
4837  def do_optimize(self, max_steps):
4838  """do_optimize(ConjugateGradients self, unsigned int max_steps) -> IMP::Float"""
4839  return _IMP_core.ConjugateGradients_do_optimize(self, max_steps)
4840 
4841 
4842  def get_version_info(self):
4843  """get_version_info(ConjugateGradients self) -> VersionInfo"""
4844  return _IMP_core.ConjugateGradients_get_version_info(self)
4845 
4846 
4847  def __str__(self):
4848  """__str__(ConjugateGradients self) -> std::string"""
4849  return _IMP_core.ConjugateGradients___str__(self)
4850 
4851 
4852  def __repr__(self):
4853  """__repr__(ConjugateGradients self) -> std::string"""
4854  return _IMP_core.ConjugateGradients___repr__(self)
4855 
4856 
4857  @staticmethod
4858  def get_from(o):
4859  return _object_cast_to_ConjugateGradients(o)
4860 
4861 ConjugateGradients_swigregister = _IMP_core.ConjugateGradients_swigregister
4862 ConjugateGradients_swigregister(ConjugateGradients)
4863 
4864 class ConnectivityRestraint(IMP.Restraint):
4865  """Proxy of C++ IMP::core::ConnectivityRestraint class."""
4866 
4867  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
4868 
4869  def __init__(self, ps, sc):
4870  """__init__(IMP::core::ConnectivityRestraint self, PairScore ps, _SingletonContainerAdaptor sc) -> ConnectivityRestraint"""
4871  this = _IMP_core.new_ConnectivityRestraint(ps, sc)
4872  try:
4873  self.this.append(this)
4874  except __builtin__.Exception:
4875  self.this = this
4876 
4877  def get_connected_index_pairs(self):
4878  """get_connected_index_pairs(ConnectivityRestraint self) -> IMP::ParticleIndexPairs"""
4879  return _IMP_core.ConnectivityRestraint_get_connected_index_pairs(self)
4880 
4881 
4882  def get_pair_score(self):
4883  """get_pair_score(ConnectivityRestraint self) -> PairScore"""
4884  return _IMP_core.ConnectivityRestraint_get_pair_score(self)
4885 
4886 
4887  def do_create_current_decomposition(self):
4888  """do_create_current_decomposition(ConnectivityRestraint self) -> IMP::Restraints"""
4889  return _IMP_core.ConnectivityRestraint_do_create_current_decomposition(self)
4890 
4891 
4892  def do_get_inputs(self):
4893  """do_get_inputs(ConnectivityRestraint self) -> IMP::ModelObjectsTemp"""
4894  return _IMP_core.ConnectivityRestraint_do_get_inputs(self)
4895 
4896 
4897  def get_version_info(self):
4898  """get_version_info(ConnectivityRestraint self) -> VersionInfo"""
4899  return _IMP_core.ConnectivityRestraint_get_version_info(self)
4900 
4901 
4902  def __str__(self):
4903  """__str__(ConnectivityRestraint self) -> std::string"""
4904  return _IMP_core.ConnectivityRestraint___str__(self)
4905 
4906 
4907  def __repr__(self):
4908  """__repr__(ConnectivityRestraint self) -> std::string"""
4909  return _IMP_core.ConnectivityRestraint___repr__(self)
4910 
4911 
4912  @staticmethod
4913  def get_from(o):
4914  return _object_cast_to_ConnectivityRestraint(o)
4915 
4916 ConnectivityRestraint_swigregister = _IMP_core.ConnectivityRestraint_swigregister
4917 ConnectivityRestraint_swigregister(ConnectivityRestraint)
4918 
4919 class ConstantRestraint(IMP.Restraint):
4920  """Proxy of C++ IMP::core::ConstantRestraint class."""
4921 
4922  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
4923 
4924  def __init__(self, m, v):
4925  """__init__(IMP::core::ConstantRestraint self, Model m, IMP::Float v) -> ConstantRestraint"""
4926  this = _IMP_core.new_ConstantRestraint(m, v)
4927  try:
4928  self.this.append(this)
4929  except __builtin__.Exception:
4930  self.this = this
4931 
4932  def do_get_inputs(self):
4933  """do_get_inputs(ConstantRestraint self) -> IMP::ModelObjectsTemp"""
4934  return _IMP_core.ConstantRestraint_do_get_inputs(self)
4935 
4936 
4937  def get_version_info(self):
4938  """get_version_info(ConstantRestraint self) -> VersionInfo"""
4939  return _IMP_core.ConstantRestraint_get_version_info(self)
4940 
4941 
4942  def __str__(self):
4943  """__str__(ConstantRestraint self) -> std::string"""
4944  return _IMP_core.ConstantRestraint___str__(self)
4945 
4946 
4947  def __repr__(self):
4948  """__repr__(ConstantRestraint self) -> std::string"""
4949  return _IMP_core.ConstantRestraint___repr__(self)
4950 
4951 
4952  @staticmethod
4953  def get_from(o):
4954  return _object_cast_to_ConstantRestraint(o)
4955 
4956 ConstantRestraint_swigregister = _IMP_core.ConstantRestraint_swigregister
4957 ConstantRestraint_swigregister(ConstantRestraint)
4958 
4959 class Cosine(IMP.UnaryFunction):
4960  """Proxy of C++ IMP::core::Cosine class."""
4961 
4962  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
4963 
4964  def __init__(self, force_constant, periodicity, phase):
4965  """__init__(IMP::core::Cosine self, IMP::Float force_constant, int periodicity, IMP::Float phase) -> Cosine"""
4966  this = _IMP_core.new_Cosine(force_constant, periodicity, phase)
4967  try:
4968  self.this.append(this)
4969  except __builtin__.Exception:
4970  self.this = this
4971 
4972  def get_version_info(self):
4973  """get_version_info(Cosine self) -> VersionInfo"""
4974  return _IMP_core.Cosine_get_version_info(self)
4975 
4976 
4977  def do_show(self, out):
4978  """do_show(Cosine self, _ostream out)"""
4979  return _IMP_core.Cosine_do_show(self, out)
4980 
4981 
4982  def __str__(self):
4983  """__str__(Cosine self) -> std::string"""
4984  return _IMP_core.Cosine___str__(self)
4985 
4986 
4987  def __repr__(self):
4988  """__repr__(Cosine self) -> std::string"""
4989  return _IMP_core.Cosine___repr__(self)
4990 
4991 
4992  @staticmethod
4993  def get_from(o):
4994  return _object_cast_to_Cosine(o)
4995 
4996 Cosine_swigregister = _IMP_core.Cosine_swigregister
4997 Cosine_swigregister(Cosine)
4998 
4999 class CoverRefined(IMP.SingletonModifier):
5000  """Proxy of C++ IMP::core::CoverRefined class."""
5001 
5002  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
5003 
5004  def __init__(self, ref, slack=0):
5005  """
5006  __init__(IMP::core::CoverRefined self, Refiner ref, IMP::Float slack=0) -> CoverRefined
5007  __init__(IMP::core::CoverRefined self, Refiner ref) -> CoverRefined
5008  """
5009  this = _IMP_core.new_CoverRefined(ref, slack)
5010  try:
5011  self.this.append(this)
5012  except __builtin__.Exception:
5013  self.this = this
5014 
5015  def set_slack(self, slack):
5016  """set_slack(CoverRefined self, IMP::Float slack)"""
5017  return _IMP_core.CoverRefined_set_slack(self, slack)
5018 
5019 
5020  def do_get_inputs(self, m, pis):
5021  """do_get_inputs(CoverRefined self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
5022  return _IMP_core.CoverRefined_do_get_inputs(self, m, pis)
5023 
5024 
5025  def do_get_outputs(self, m, pis):
5026  """do_get_outputs(CoverRefined self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
5027  return _IMP_core.CoverRefined_do_get_outputs(self, m, pis)
5028 
5029 
5030  def get_version_info(self):
5031  """get_version_info(CoverRefined self) -> VersionInfo"""
5032  return _IMP_core.CoverRefined_get_version_info(self)
5033 
5034 
5035  def __str__(self):
5036  """__str__(CoverRefined self) -> std::string"""
5037  return _IMP_core.CoverRefined___str__(self)
5038 
5039 
5040  def __repr__(self):
5041  """__repr__(CoverRefined self) -> std::string"""
5042  return _IMP_core.CoverRefined___repr__(self)
5043 
5044 
5045  @staticmethod
5046  def get_from(o):
5047  return _object_cast_to_CoverRefined(o)
5048 
5049 CoverRefined_swigregister = _IMP_core.CoverRefined_swigregister
5050 CoverRefined_swigregister(CoverRefined)
5051 
5052 class Cover(XYZR):
5053  """Proxy of C++ IMP::core::Cover class."""
5054 
5055  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
5056 
5057  def get_constraint(self):
5058  """get_constraint(Cover self) -> Constraint"""
5059  return _IMP_core.Cover_get_constraint(self)
5060 
5061 
5062  def __init__(self, *args):
5063  """
5064  __init__(IMP::core::Cover self) -> Cover
5065  __init__(IMP::core::Cover self, Model m, ParticleIndex id) -> Cover
5066  __init__(IMP::core::Cover self, _ParticleAdaptor d) -> Cover
5067  """
5068  this = _IMP_core.new_Cover(*args)
5069  try:
5070  self.this.append(this)
5071  except __builtin__.Exception:
5072  self.this = this
5073 
5074  def show(self, *args):
5075  """
5076  show(Cover self, _ostream out)
5077  show(Cover self)
5078  """
5079  return _IMP_core.Cover_show(self, *args)
5080 
5081 
5082  def setup_particle(*args):
5083  """
5084  setup_particle(Model m, ParticleIndex pi, _ParticleIndexesAdaptor members) -> Cover
5085  setup_particle(_ParticleAdaptor decorator, _ParticleIndexesAdaptor members) -> Cover
5086  setup_particle(Model m, ParticleIndex pi, Refiner refiner) -> Cover
5087  setup_particle(_ParticleAdaptor decorator, Refiner refiner) -> Cover
5088  """
5089  return _IMP_core.Cover_setup_particle(*args)
5090 
5091  setup_particle = staticmethod(setup_particle)
5092 
5093  def get_is_setup(*args):
5094  """
5095  get_is_setup(_ParticleAdaptor p) -> bool
5096  get_is_setup(Model m, ParticleIndex pi) -> bool
5097  """
5098  return _IMP_core.Cover_get_is_setup(*args)
5099 
5100  get_is_setup = staticmethod(get_is_setup)
5101 
5102  def add_attribute(self, *args):
5103  """
5104  add_attribute(Cover self, FloatKey k, IMP::Float v, bool opt)
5105  add_attribute(Cover self, FloatKey a0, IMP::Float a1)
5106  add_attribute(Cover self, IntKey a0, IMP::Int a1)
5107  add_attribute(Cover self, StringKey a0, IMP::String a1)
5108  add_attribute(Cover self, ParticleIndexKey a0, Particle a1)
5109  add_attribute(Cover self, ObjectKey a0, Object a1)
5110  """
5111  return _IMP_core.Cover_add_attribute(self, *args)
5112 
5113 
5114  def get_value(self, *args):
5115  """
5116  get_value(Cover self, FloatKey a0) -> IMP::Float
5117  get_value(Cover self, IntKey a0) -> IMP::Int
5118  get_value(Cover self, StringKey a0) -> IMP::String
5119  get_value(Cover self, ParticleIndexKey a0) -> Particle
5120  get_value(Cover self, ObjectKey a0) -> Object
5121  """
5122  return _IMP_core.Cover_get_value(self, *args)
5123 
5124 
5125  def set_value(self, *args):
5126  """
5127  set_value(Cover self, FloatKey a0, IMP::Float a1)
5128  set_value(Cover self, IntKey a0, IMP::Int a1)
5129  set_value(Cover self, StringKey a0, IMP::String a1)
5130  set_value(Cover self, ParticleIndexKey a0, Particle a1)
5131  set_value(Cover self, ObjectKey a0, Object a1)
5132  """
5133  return _IMP_core.Cover_set_value(self, *args)
5134 
5135 
5136  def remove_attribute(self, *args):
5137  """
5138  remove_attribute(Cover self, FloatKey a0)
5139  remove_attribute(Cover self, IntKey a0)
5140  remove_attribute(Cover self, StringKey a0)
5141  remove_attribute(Cover self, ParticleIndexKey a0)
5142  remove_attribute(Cover self, ObjectKey a0)
5143  """
5144  return _IMP_core.Cover_remove_attribute(self, *args)
5145 
5146 
5147  def has_attribute(self, *args):
5148  """
5149  has_attribute(Cover self, FloatKey a0) -> bool
5150  has_attribute(Cover self, IntKey a0) -> bool
5151  has_attribute(Cover self, StringKey a0) -> bool
5152  has_attribute(Cover self, ParticleIndexKey a0) -> bool
5153  has_attribute(Cover self, ObjectKey a0) -> bool
5154  """
5155  return _IMP_core.Cover_has_attribute(self, *args)
5156 
5157 
5158  def get_derivative(self, a0):
5159  """get_derivative(Cover self, FloatKey a0) -> double"""
5160  return _IMP_core.Cover_get_derivative(self, a0)
5161 
5162 
5163  def get_name(self):
5164  """get_name(Cover self) -> std::string"""
5165  return _IMP_core.Cover_get_name(self)
5166 
5167 
5168  def clear_caches(self):
5169  """clear_caches(Cover self)"""
5170  return _IMP_core.Cover_clear_caches(self)
5171 
5172 
5173  def set_name(self, a0):
5174  """set_name(Cover self, std::string a0)"""
5175  return _IMP_core.Cover_set_name(self, a0)
5176 
5177 
5178  def set_check_level(self, a0):
5179  """set_check_level(Cover self, IMP::CheckLevel a0)"""
5180  return _IMP_core.Cover_set_check_level(self, a0)
5181 
5182 
5183  def add_to_derivative(self, a0, a1, a2):
5184  """add_to_derivative(Cover self, FloatKey a0, double a1, DerivativeAccumulator a2)"""
5185  return _IMP_core.Cover_add_to_derivative(self, a0, a1, a2)
5186 
5187 
5188  def set_is_optimized(self, a0, a1):
5189  """set_is_optimized(Cover self, FloatKey a0, bool a1)"""
5190  return _IMP_core.Cover_set_is_optimized(self, a0, a1)
5191 
5192 
5193  def get_is_optimized(self, a0):
5194  """get_is_optimized(Cover self, FloatKey a0) -> bool"""
5195  return _IMP_core.Cover_get_is_optimized(self, a0)
5196 
5197 
5198  def get_check_level(self):
5199  """get_check_level(Cover self) -> IMP::CheckLevel"""
5200  return _IMP_core.Cover_get_check_level(self)
5201 
5202 
5203  def __eq__(self, *args):
5204  """
5205  __eq__(Cover self, Cover o) -> bool
5206  __eq__(Cover self, Particle d) -> bool
5207  """
5208  return _IMP_core.Cover___eq__(self, *args)
5209 
5210 
5211  def __ne__(self, *args):
5212  """
5213  __ne__(Cover self, Cover o) -> bool
5214  __ne__(Cover self, Particle d) -> bool
5215  """
5216  return _IMP_core.Cover___ne__(self, *args)
5217 
5218 
5219  def __le__(self, *args):
5220  """
5221  __le__(Cover self, Cover o) -> bool
5222  __le__(Cover self, Particle d) -> bool
5223  """
5224  return _IMP_core.Cover___le__(self, *args)
5225 
5226 
5227  def __lt__(self, *args):
5228  """
5229  __lt__(Cover self, Cover o) -> bool
5230  __lt__(Cover self, Particle d) -> bool
5231  """
5232  return _IMP_core.Cover___lt__(self, *args)
5233 
5234 
5235  def __ge__(self, *args):
5236  """
5237  __ge__(Cover self, Cover o) -> bool
5238  __ge__(Cover self, Particle d) -> bool
5239  """
5240  return _IMP_core.Cover___ge__(self, *args)
5241 
5242 
5243  def __gt__(self, *args):
5244  """
5245  __gt__(Cover self, Cover o) -> bool
5246  __gt__(Cover self, Particle d) -> bool
5247  """
5248  return _IMP_core.Cover___gt__(self, *args)
5249 
5250 
5251  def __hash__(self):
5252  """__hash__(Cover self) -> std::size_t"""
5253  return _IMP_core.Cover___hash__(self)
5254 
5255 
5256  def __str__(self):
5257  """__str__(Cover self) -> std::string"""
5258  return _IMP_core.Cover___str__(self)
5259 
5260 
5261  def __repr__(self):
5262  """__repr__(Cover self) -> std::string"""
5263  return _IMP_core.Cover___repr__(self)
5264 
5265  __swig_destroy__ = _IMP_core.delete_Cover
5266  __del__ = lambda self: None
5267 Cover_swigregister = _IMP_core.Cover_swigregister
5268 Cover_swigregister(Cover)
5269 
5270 def Cover_setup_particle(*args):
5271  """
5272  setup_particle(Model m, ParticleIndex pi, _ParticleIndexesAdaptor members) -> Cover
5273  setup_particle(_ParticleAdaptor decorator, _ParticleIndexesAdaptor members) -> Cover
5274  setup_particle(Model m, ParticleIndex pi, Refiner refiner) -> Cover
5275  Cover_setup_particle(_ParticleAdaptor decorator, Refiner refiner) -> Cover
5276  """
5277  return _IMP_core.Cover_setup_particle(*args)
5278 
5279 def Cover_get_is_setup(*args):
5280  """
5281  get_is_setup(_ParticleAdaptor p) -> bool
5282  Cover_get_is_setup(Model m, ParticleIndex pi) -> bool
5283  """
5284  return _IMP_core.Cover_get_is_setup(*args)
5285 
5286 class DerivativesFromRefined(IMP.SingletonModifier):
5287  """Proxy of C++ IMP::core::DerivativesFromRefined class."""
5288 
5289  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
5290 
5291  def __init__(self, *args):
5292  """
5293  __init__(IMP::core::DerivativesFromRefined self, Refiner r, IMP::FloatKeys ks) -> DerivativesFromRefined
5294  __init__(IMP::core::DerivativesFromRefined self, Refiner r) -> DerivativesFromRefined
5295  """
5296  this = _IMP_core.new_DerivativesFromRefined(*args)
5297  try:
5298  self.this.append(this)
5299  except __builtin__.Exception:
5300  self.this = this
5301 
5302  def do_get_inputs(self, m, pis):
5303  """do_get_inputs(DerivativesFromRefined self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
5304  return _IMP_core.DerivativesFromRefined_do_get_inputs(self, m, pis)
5305 
5306 
5307  def do_get_outputs(self, m, pis):
5308  """do_get_outputs(DerivativesFromRefined self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
5309  return _IMP_core.DerivativesFromRefined_do_get_outputs(self, m, pis)
5310 
5311 
5312  def get_version_info(self):
5313  """get_version_info(DerivativesFromRefined self) -> VersionInfo"""
5314  return _IMP_core.DerivativesFromRefined_get_version_info(self)
5315 
5316 
5317  def __str__(self):
5318  """__str__(DerivativesFromRefined self) -> std::string"""
5319  return _IMP_core.DerivativesFromRefined___str__(self)
5320 
5321 
5322  def __repr__(self):
5323  """__repr__(DerivativesFromRefined self) -> std::string"""
5324  return _IMP_core.DerivativesFromRefined___repr__(self)
5325 
5326 
5327  @staticmethod
5328  def get_from(o):
5329  return _object_cast_to_DerivativesFromRefined(o)
5330 
5331 DerivativesFromRefined_swigregister = _IMP_core.DerivativesFromRefined_swigregister
5332 DerivativesFromRefined_swigregister(DerivativesFromRefined)
5333 
5334 class DerivativesToRefined(IMP.SingletonModifier):
5335  """Proxy of C++ IMP::core::DerivativesToRefined class."""
5336 
5337  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
5338 
5339  def __init__(self, *args):
5340  """
5341  __init__(IMP::core::DerivativesToRefined self, Refiner r, IMP::FloatKeys ks) -> DerivativesToRefined
5342  __init__(IMP::core::DerivativesToRefined self, Refiner r) -> DerivativesToRefined
5343  """
5344  this = _IMP_core.new_DerivativesToRefined(*args)
5345  try:
5346  self.this.append(this)
5347  except __builtin__.Exception:
5348  self.this = this
5349 
5350  def do_get_inputs(self, m, pis):
5351  """do_get_inputs(DerivativesToRefined self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
5352  return _IMP_core.DerivativesToRefined_do_get_inputs(self, m, pis)
5353 
5354 
5355  def do_get_outputs(self, m, pis):
5356  """do_get_outputs(DerivativesToRefined self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
5357  return _IMP_core.DerivativesToRefined_do_get_outputs(self, m, pis)
5358 
5359 
5360  def get_version_info(self):
5361  """get_version_info(DerivativesToRefined self) -> VersionInfo"""
5362  return _IMP_core.DerivativesToRefined_get_version_info(self)
5363 
5364 
5365  def __str__(self):
5366  """__str__(DerivativesToRefined self) -> std::string"""
5367  return _IMP_core.DerivativesToRefined___str__(self)
5368 
5369 
5370  def __repr__(self):
5371  """__repr__(DerivativesToRefined self) -> std::string"""
5372  return _IMP_core.DerivativesToRefined___repr__(self)
5373 
5374 
5375  @staticmethod
5376  def get_from(o):
5377  return _object_cast_to_DerivativesToRefined(o)
5378 
5379 DerivativesToRefined_swigregister = _IMP_core.DerivativesToRefined_swigregister
5380 DerivativesToRefined_swigregister(DerivativesToRefined)
5381 
5382 class DiameterRestraint(IMP.Restraint):
5383  """Proxy of C++ IMP::core::DiameterRestraint class."""
5384 
5385  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
5386 
5387  def __init__(self, f, sc, diameter):
5388  """__init__(IMP::core::DiameterRestraint self, UnaryFunction f, SingletonContainer sc, IMP::Float diameter) -> DiameterRestraint"""
5389  this = _IMP_core.new_DiameterRestraint(f, sc, diameter)
5390  try:
5391  self.this.append(this)
5392  except __builtin__.Exception:
5393  self.this = this
5394 
5395  def do_get_inputs(self):
5396  """do_get_inputs(DiameterRestraint self) -> IMP::ModelObjectsTemp"""
5397  return _IMP_core.DiameterRestraint_do_get_inputs(self)
5398 
5399 
5400  def get_version_info(self):
5401  """get_version_info(DiameterRestraint self) -> VersionInfo"""
5402  return _IMP_core.DiameterRestraint_get_version_info(self)
5403 
5404 
5405  def do_create_decomposition(self):
5406  """do_create_decomposition(DiameterRestraint self) -> IMP::Restraints"""
5407  return _IMP_core.DiameterRestraint_do_create_decomposition(self)
5408 
5409 
5410  def do_create_current_decomposition(self):
5411  """do_create_current_decomposition(DiameterRestraint self) -> IMP::Restraints"""
5412  return _IMP_core.DiameterRestraint_do_create_current_decomposition(self)
5413 
5414 
5415  def __str__(self):
5416  """__str__(DiameterRestraint self) -> std::string"""
5417  return _IMP_core.DiameterRestraint___str__(self)
5418 
5419 
5420  def __repr__(self):
5421  """__repr__(DiameterRestraint self) -> std::string"""
5422  return _IMP_core.DiameterRestraint___repr__(self)
5423 
5424 
5425  @staticmethod
5426  def get_from(o):
5427  return _object_cast_to_DiameterRestraint(o)
5428 
5429 DiameterRestraint_swigregister = _IMP_core.DiameterRestraint_swigregister
5430 DiameterRestraint_swigregister(DiameterRestraint)
5431 
5432 class Transform(IMP.SingletonModifier):
5433  """Proxy of C++ IMP::core::Transform class."""
5434 
5435  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
5436 
5437  def __init__(self, t, ignore_non_xyz=False):
5438  """
5439  __init__(IMP::core::Transform self, Transformation3D t, bool ignore_non_xyz=False) -> Transform
5440  __init__(IMP::core::Transform self, Transformation3D t) -> Transform
5441  """
5442  this = _IMP_core.new_Transform(t, ignore_non_xyz)
5443  try:
5444  self.this.append(this)
5445  except __builtin__.Exception:
5446  self.this = this
5447 
5448  def do_get_inputs(self, m, pis):
5449  """do_get_inputs(Transform self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
5450  return _IMP_core.Transform_do_get_inputs(self, m, pis)
5451 
5452 
5453  def do_get_outputs(self, m, pis):
5454  """do_get_outputs(Transform self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
5455  return _IMP_core.Transform_do_get_outputs(self, m, pis)
5456 
5457 
5458  def get_version_info(self):
5459  """get_version_info(Transform self) -> VersionInfo"""
5460  return _IMP_core.Transform_get_version_info(self)
5461 
5462 
5463  def __str__(self):
5464  """__str__(Transform self) -> std::string"""
5465  return _IMP_core.Transform___str__(self)
5466 
5467 
5468  def __repr__(self):
5469  """__repr__(Transform self) -> std::string"""
5470  return _IMP_core.Transform___repr__(self)
5471 
5472 
5473  @staticmethod
5474  def get_from(o):
5475  return _object_cast_to_Transform(o)
5476 
5477 Transform_swigregister = _IMP_core.Transform_swigregister
5478 Transform_swigregister(Transform)
5479 
5480 class Reference(IMP.Decorator):
5481  """Proxy of C++ IMP::core::Reference class."""
5482 
5483  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
5484 
5485  def __init__(self, *args):
5486  """
5487  __init__(IMP::core::Reference self) -> Reference
5488  __init__(IMP::core::Reference self, Model m, ParticleIndex id) -> Reference
5489  __init__(IMP::core::Reference self, _ParticleAdaptor d) -> Reference
5490  """
5491  this = _IMP_core.new_Reference(*args)
5492  try:
5493  self.this.append(this)
5494  except __builtin__.Exception:
5495  self.this = this
5496 
5497  def show(self, *args):
5498  """
5499  show(Reference self, _ostream out)
5500  show(Reference self)
5501  """
5502  return _IMP_core.Reference_show(self, *args)
5503 
5504 
5505  def setup_particle(*args):
5506  """
5507  setup_particle(Model m, ParticleIndex pi, _ParticleIndexAdaptor reference) -> Reference
5508  setup_particle(_ParticleAdaptor decorator, _ParticleIndexAdaptor reference) -> Reference
5509  """
5510  return _IMP_core.Reference_setup_particle(*args)
5511 
5512  setup_particle = staticmethod(setup_particle)
5513 
5514  def get_reference_particle(self):
5515  """get_reference_particle(Reference self) -> Particle"""
5516  return _IMP_core.Reference_get_reference_particle(self)
5517 
5518 
5519  def get_is_setup(*args):
5520  """
5521  get_is_setup(_ParticleAdaptor p) -> bool
5522  get_is_setup(Model m, ParticleIndex pi) -> bool
5523  """
5524  return _IMP_core.Reference_get_is_setup(*args)
5525 
5526  get_is_setup = staticmethod(get_is_setup)
5527 
5528  def get_reference_key():
5529  """get_reference_key() -> ParticleIndexKey"""
5530  return _IMP_core.Reference_get_reference_key()
5531 
5532  get_reference_key = staticmethod(get_reference_key)
5533 
5534  def add_attribute(self, *args):
5535  """
5536  add_attribute(Reference self, FloatKey k, IMP::Float v, bool opt)
5537  add_attribute(Reference self, FloatKey a0, IMP::Float a1)
5538  add_attribute(Reference self, IntKey a0, IMP::Int a1)
5539  add_attribute(Reference self, StringKey a0, IMP::String a1)
5540  add_attribute(Reference self, ParticleIndexKey a0, Particle a1)
5541  add_attribute(Reference self, ObjectKey a0, Object a1)
5542  """
5543  return _IMP_core.Reference_add_attribute(self, *args)
5544 
5545 
5546  def get_value(self, *args):
5547  """
5548  get_value(Reference self, FloatKey a0) -> IMP::Float
5549  get_value(Reference self, IntKey a0) -> IMP::Int
5550  get_value(Reference self, StringKey a0) -> IMP::String
5551  get_value(Reference self, ParticleIndexKey a0) -> Particle
5552  get_value(Reference self, ObjectKey a0) -> Object
5553  """
5554  return _IMP_core.Reference_get_value(self, *args)
5555 
5556 
5557  def set_value(self, *args):
5558  """
5559  set_value(Reference self, FloatKey a0, IMP::Float a1)
5560  set_value(Reference self, IntKey a0, IMP::Int a1)
5561  set_value(Reference self, StringKey a0, IMP::String a1)
5562  set_value(Reference self, ParticleIndexKey a0, Particle a1)
5563  set_value(Reference self, ObjectKey a0, Object a1)
5564  """
5565  return _IMP_core.Reference_set_value(self, *args)
5566 
5567 
5568  def remove_attribute(self, *args):
5569  """
5570  remove_attribute(Reference self, FloatKey a0)
5571  remove_attribute(Reference self, IntKey a0)
5572  remove_attribute(Reference self, StringKey a0)
5573  remove_attribute(Reference self, ParticleIndexKey a0)
5574  remove_attribute(Reference self, ObjectKey a0)
5575  """
5576  return _IMP_core.Reference_remove_attribute(self, *args)
5577 
5578 
5579  def has_attribute(self, *args):
5580  """
5581  has_attribute(Reference self, FloatKey a0) -> bool
5582  has_attribute(Reference self, IntKey a0) -> bool
5583  has_attribute(Reference self, StringKey a0) -> bool
5584  has_attribute(Reference self, ParticleIndexKey a0) -> bool
5585  has_attribute(Reference self, ObjectKey a0) -> bool
5586  """
5587  return _IMP_core.Reference_has_attribute(self, *args)
5588 
5589 
5590  def get_derivative(self, a0):
5591  """get_derivative(Reference self, FloatKey a0) -> double"""
5592  return _IMP_core.Reference_get_derivative(self, a0)
5593 
5594 
5595  def get_name(self):
5596  """get_name(Reference self) -> std::string"""
5597  return _IMP_core.Reference_get_name(self)
5598 
5599 
5600  def clear_caches(self):
5601  """clear_caches(Reference self)"""
5602  return _IMP_core.Reference_clear_caches(self)
5603 
5604 
5605  def set_name(self, a0):
5606  """set_name(Reference self, std::string a0)"""
5607  return _IMP_core.Reference_set_name(self, a0)
5608 
5609 
5610  def set_check_level(self, a0):
5611  """set_check_level(Reference self, IMP::CheckLevel a0)"""
5612  return _IMP_core.Reference_set_check_level(self, a0)
5613 
5614 
5615  def add_to_derivative(self, a0, a1, a2):
5616  """add_to_derivative(Reference self, FloatKey a0, double a1, DerivativeAccumulator a2)"""
5617  return _IMP_core.Reference_add_to_derivative(self, a0, a1, a2)
5618 
5619 
5620  def set_is_optimized(self, a0, a1):
5621  """set_is_optimized(Reference self, FloatKey a0, bool a1)"""
5622  return _IMP_core.Reference_set_is_optimized(self, a0, a1)
5623 
5624 
5625  def get_is_optimized(self, a0):
5626  """get_is_optimized(Reference self, FloatKey a0) -> bool"""
5627  return _IMP_core.Reference_get_is_optimized(self, a0)
5628 
5629 
5630  def get_check_level(self):
5631  """get_check_level(Reference self) -> IMP::CheckLevel"""
5632  return _IMP_core.Reference_get_check_level(self)
5633 
5634 
5635  def __eq__(self, *args):
5636  """
5637  __eq__(Reference self, Reference o) -> bool
5638  __eq__(Reference self, Particle d) -> bool
5639  """
5640  return _IMP_core.Reference___eq__(self, *args)
5641 
5642 
5643  def __ne__(self, *args):
5644  """
5645  __ne__(Reference self, Reference o) -> bool
5646  __ne__(Reference self, Particle d) -> bool
5647  """
5648  return _IMP_core.Reference___ne__(self, *args)
5649 
5650 
5651  def __le__(self, *args):
5652  """
5653  __le__(Reference self, Reference o) -> bool
5654  __le__(Reference self, Particle d) -> bool
5655  """
5656  return _IMP_core.Reference___le__(self, *args)
5657 
5658 
5659  def __lt__(self, *args):
5660  """
5661  __lt__(Reference self, Reference o) -> bool
5662  __lt__(Reference self, Particle d) -> bool
5663  """
5664  return _IMP_core.Reference___lt__(self, *args)
5665 
5666 
5667  def __ge__(self, *args):
5668  """
5669  __ge__(Reference self, Reference o) -> bool
5670  __ge__(Reference self, Particle d) -> bool
5671  """
5672  return _IMP_core.Reference___ge__(self, *args)
5673 
5674 
5675  def __gt__(self, *args):
5676  """
5677  __gt__(Reference self, Reference o) -> bool
5678  __gt__(Reference self, Particle d) -> bool
5679  """
5680  return _IMP_core.Reference___gt__(self, *args)
5681 
5682 
5683  def __hash__(self):
5684  """__hash__(Reference self) -> std::size_t"""
5685  return _IMP_core.Reference___hash__(self)
5686 
5687 
5688  def __str__(self):
5689  """__str__(Reference self) -> std::string"""
5690  return _IMP_core.Reference___str__(self)
5691 
5692 
5693  def __repr__(self):
5694  """__repr__(Reference self) -> std::string"""
5695  return _IMP_core.Reference___repr__(self)
5696 
5697  __swig_destroy__ = _IMP_core.delete_Reference
5698  __del__ = lambda self: None
5699 Reference_swigregister = _IMP_core.Reference_swigregister
5700 Reference_swigregister(Reference)
5701 
5702 def Reference_setup_particle(*args):
5703  """
5704  setup_particle(Model m, ParticleIndex pi, _ParticleIndexAdaptor reference) -> Reference
5705  Reference_setup_particle(_ParticleAdaptor decorator, _ParticleIndexAdaptor reference) -> Reference
5706  """
5707  return _IMP_core.Reference_setup_particle(*args)
5708 
5709 def Reference_get_is_setup(*args):
5710  """
5711  get_is_setup(_ParticleAdaptor p) -> bool
5712  Reference_get_is_setup(Model m, ParticleIndex pi) -> bool
5713  """
5714  return _IMP_core.Reference_get_is_setup(*args)
5715 
5716 def Reference_get_reference_key():
5717  """Reference_get_reference_key() -> ParticleIndexKey"""
5718  return _IMP_core.Reference_get_reference_key()
5719 
5720 class TransformationAndReflectionSymmetry(IMP.SingletonModifier):
5721  """Proxy of C++ IMP::core::TransformationAndReflectionSymmetry class."""
5722 
5723  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
5724 
5725  def __init__(self, t, r):
5726  """__init__(IMP::core::TransformationAndReflectionSymmetry self, Transformation3D t, Reflection3D r) -> TransformationAndReflectionSymmetry"""
5727  this = _IMP_core.new_TransformationAndReflectionSymmetry(t, r)
5728  try:
5729  self.this.append(this)
5730  except __builtin__.Exception:
5731  self.this = this
5732 
5733  def do_get_inputs(self, m, pis):
5734  """do_get_inputs(TransformationAndReflectionSymmetry self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
5735  return _IMP_core.TransformationAndReflectionSymmetry_do_get_inputs(self, m, pis)
5736 
5737 
5738  def do_get_outputs(self, m, pis):
5739  """do_get_outputs(TransformationAndReflectionSymmetry self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
5740  return _IMP_core.TransformationAndReflectionSymmetry_do_get_outputs(self, m, pis)
5741 
5742 
5743  def get_version_info(self):
5744  """get_version_info(TransformationAndReflectionSymmetry self) -> VersionInfo"""
5745  return _IMP_core.TransformationAndReflectionSymmetry_get_version_info(self)
5746 
5747 
5748  def __str__(self):
5749  """__str__(TransformationAndReflectionSymmetry self) -> std::string"""
5750  return _IMP_core.TransformationAndReflectionSymmetry___str__(self)
5751 
5752 
5753  def __repr__(self):
5754  """__repr__(TransformationAndReflectionSymmetry self) -> std::string"""
5755  return _IMP_core.TransformationAndReflectionSymmetry___repr__(self)
5756 
5757 
5758  @staticmethod
5759  def get_from(o):
5760  return _object_cast_to_TransformationAndReflectionSymmetry(o)
5761 
5762 TransformationAndReflectionSymmetry_swigregister = _IMP_core.TransformationAndReflectionSymmetry_swigregister
5763 TransformationAndReflectionSymmetry_swigregister(TransformationAndReflectionSymmetry)
5764 
5765 class TransformationSymmetry(IMP.SingletonModifier):
5766  """Proxy of C++ IMP::core::TransformationSymmetry class."""
5767 
5768  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
5769 
5770  def __init__(self, *args):
5771  """
5772  __init__(IMP::core::TransformationSymmetry self, Transformation3D t) -> TransformationSymmetry
5773  __init__(IMP::core::TransformationSymmetry self, ParticleIndex rb_pi) -> TransformationSymmetry
5774  """
5775  this = _IMP_core.new_TransformationSymmetry(*args)
5776  try:
5777  self.this.append(this)
5778  except __builtin__.Exception:
5779  self.this = this
5780 
5781  def get_transformation(self):
5782  """get_transformation(TransformationSymmetry self) -> Transformation3D"""
5783  return _IMP_core.TransformationSymmetry_get_transformation(self)
5784 
5785 
5786  def set_transformation(self, t):
5787  """set_transformation(TransformationSymmetry self, Transformation3D t)"""
5788  return _IMP_core.TransformationSymmetry_set_transformation(self, t)
5789 
5790 
5791  def do_get_inputs(self, m, pis):
5792  """do_get_inputs(TransformationSymmetry self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
5793  return _IMP_core.TransformationSymmetry_do_get_inputs(self, m, pis)
5794 
5795 
5796  def do_get_outputs(self, m, pis):
5797  """do_get_outputs(TransformationSymmetry self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
5798  return _IMP_core.TransformationSymmetry_do_get_outputs(self, m, pis)
5799 
5800 
5801  def get_version_info(self):
5802  """get_version_info(TransformationSymmetry self) -> VersionInfo"""
5803  return _IMP_core.TransformationSymmetry_get_version_info(self)
5804 
5805 
5806  def __str__(self):
5807  """__str__(TransformationSymmetry self) -> std::string"""
5808  return _IMP_core.TransformationSymmetry___str__(self)
5809 
5810 
5811  def __repr__(self):
5812  """__repr__(TransformationSymmetry self) -> std::string"""
5813  return _IMP_core.TransformationSymmetry___repr__(self)
5814 
5815 
5816  @staticmethod
5817  def get_from(o):
5818  return _object_cast_to_TransformationSymmetry(o)
5819 
5820 TransformationSymmetry_swigregister = _IMP_core.TransformationSymmetry_swigregister
5821 TransformationSymmetry_swigregister(TransformationSymmetry)
5822 
5823 class TransformationSymmetryMover(MonteCarloMover):
5824  """Proxy of C++ IMP::core::TransformationSymmetryMover class."""
5825 
5826  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
5827 
5828  def __init__(self, m, symm, pivot, max_translation, max_rotation):
5829  """__init__(IMP::core::TransformationSymmetryMover self, Model m, TransformationSymmetry symm, ParticleIndex pivot, IMP::Float max_translation, IMP::Float max_rotation) -> TransformationSymmetryMover"""
5830  this = _IMP_core.new_TransformationSymmetryMover(m, symm, pivot, max_translation, max_rotation)
5831  try:
5832  self.this.append(this)
5833  except __builtin__.Exception:
5834  self.this = this
5835 
5836  def set_maximum_translation(self, mt):
5837  """set_maximum_translation(TransformationSymmetryMover self, IMP::Float mt)"""
5838  return _IMP_core.TransformationSymmetryMover_set_maximum_translation(self, mt)
5839 
5840 
5841  def set_maximum_rotation(self, mr):
5842  """set_maximum_rotation(TransformationSymmetryMover self, IMP::Float mr)"""
5843  return _IMP_core.TransformationSymmetryMover_set_maximum_rotation(self, mr)
5844 
5845 
5846  def get_maximum_translation(self):
5847  """get_maximum_translation(TransformationSymmetryMover self) -> IMP::Float"""
5848  return _IMP_core.TransformationSymmetryMover_get_maximum_translation(self)
5849 
5850 
5851  def get_maximum_rotation(self):
5852  """get_maximum_rotation(TransformationSymmetryMover self) -> IMP::Float"""
5853  return _IMP_core.TransformationSymmetryMover_get_maximum_rotation(self)
5854 
5855 
5856  def get_version_info(self):
5857  """get_version_info(TransformationSymmetryMover self) -> VersionInfo"""
5858  return _IMP_core.TransformationSymmetryMover_get_version_info(self)
5859 
5860 
5861  def __str__(self):
5862  """__str__(TransformationSymmetryMover self) -> std::string"""
5863  return _IMP_core.TransformationSymmetryMover___str__(self)
5864 
5865 
5866  def __repr__(self):
5867  """__repr__(TransformationSymmetryMover self) -> std::string"""
5868  return _IMP_core.TransformationSymmetryMover___repr__(self)
5869 
5870 
5871  @staticmethod
5872  def get_from(o):
5873  return _object_cast_to_TransformationSymmetryMover(o)
5874 
5875 TransformationSymmetryMover_swigregister = _IMP_core.TransformationSymmetryMover_swigregister
5876 TransformationSymmetryMover_swigregister(TransformationSymmetryMover)
5877 
5878 class DihedralRestraint(IMP.Restraint):
5879  """Proxy of C++ IMP::core::DihedralRestraint class."""
5880 
5881  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
5882 
5883  def __init__(self, m, score_func, p1, p2, p3, p4):
5884  """__init__(IMP::core::DihedralRestraint self, Model m, UnaryFunction score_func, _ParticleIndexAdaptor p1, _ParticleIndexAdaptor p2, _ParticleIndexAdaptor p3, _ParticleIndexAdaptor p4) -> DihedralRestraint"""
5885  this = _IMP_core.new_DihedralRestraint(m, score_func, p1, p2, p3, p4)
5886  try:
5887  self.this.append(this)
5888  except __builtin__.Exception:
5889  self.this = this
5890 
5891  def do_get_inputs(self):
5892  """do_get_inputs(DihedralRestraint self) -> IMP::ModelObjectsTemp"""
5893  return _IMP_core.DihedralRestraint_do_get_inputs(self)
5894 
5895 
5896  def get_version_info(self):
5897  """get_version_info(DihedralRestraint self) -> VersionInfo"""
5898  return _IMP_core.DihedralRestraint_get_version_info(self)
5899 
5900 
5901  def __str__(self):
5902  """__str__(DihedralRestraint self) -> std::string"""
5903  return _IMP_core.DihedralRestraint___str__(self)
5904 
5905 
5906  def __repr__(self):
5907  """__repr__(DihedralRestraint self) -> std::string"""
5908  return _IMP_core.DihedralRestraint___repr__(self)
5909 
5910 
5911  @staticmethod
5912  def get_from(o):
5913  return _object_cast_to_DihedralRestraint(o)
5914 
5915 DihedralRestraint_swigregister = _IMP_core.DihedralRestraint_swigregister
5916 DihedralRestraint_swigregister(DihedralRestraint)
5917 
5918 class DistancePairScore(IMP.PairScore):
5919  """Proxy of C++ IMP::core::DistancePairScore class."""
5920 
5921  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
5922 
5923  def __init__(self, *args):
5924  """
5925  __init__(IMP::core::DistancePairScore self, UnaryFunction uf, std::string name) -> DistancePairScore
5926  __init__(IMP::core::DistancePairScore self, UnaryFunction uf) -> DistancePairScore
5927  """
5928  this = _IMP_core.new_DistancePairScore(*args)
5929  try:
5930  self.this.append(this)
5931  except __builtin__.Exception:
5932  self.this = this
5933 
5934  def do_get_inputs(self, m, pis):
5935  """do_get_inputs(DistancePairScore self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
5936  return _IMP_core.DistancePairScore_do_get_inputs(self, m, pis)
5937 
5938 
5939  def get_version_info(self):
5940  """get_version_info(DistancePairScore self) -> VersionInfo"""
5941  return _IMP_core.DistancePairScore_get_version_info(self)
5942 
5943 
5944  def __str__(self):
5945  """__str__(DistancePairScore self) -> std::string"""
5946  return _IMP_core.DistancePairScore___str__(self)
5947 
5948 
5949  def __repr__(self):
5950  """__repr__(DistancePairScore self) -> std::string"""
5951  return _IMP_core.DistancePairScore___repr__(self)
5952 
5953 
5954  @staticmethod
5955  def get_from(o):
5956  return _object_cast_to_DistancePairScore(o)
5957 
5958 DistancePairScore_swigregister = _IMP_core.DistancePairScore_swigregister
5959 DistancePairScore_swigregister(DistancePairScore)
5960 
5961 class HarmonicDistancePairScore(IMP.PairScore):
5962  """Proxy of C++ IMP::core::HarmonicDistancePairScore class."""
5963 
5964  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
5965 
5966  def __init__(self, *args):
5967  """
5968  __init__(IMP::core::HarmonicDistancePairScore self, double x0, double k, std::string name) -> HarmonicDistancePairScore
5969  __init__(IMP::core::HarmonicDistancePairScore self, double x0, double k) -> HarmonicDistancePairScore
5970  """
5971  this = _IMP_core.new_HarmonicDistancePairScore(*args)
5972  try:
5973  self.this.append(this)
5974  except __builtin__.Exception:
5975  self.this = this
5976 
5977  def do_get_inputs(self, m, pis):
5978  """do_get_inputs(HarmonicDistancePairScore self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
5979  return _IMP_core.HarmonicDistancePairScore_do_get_inputs(self, m, pis)
5980 
5981 
5982  def get_version_info(self):
5983  """get_version_info(HarmonicDistancePairScore self) -> VersionInfo"""
5984  return _IMP_core.HarmonicDistancePairScore_get_version_info(self)
5985 
5986 
5987  def __str__(self):
5988  """__str__(HarmonicDistancePairScore self) -> std::string"""
5989  return _IMP_core.HarmonicDistancePairScore___str__(self)
5990 
5991 
5992  def __repr__(self):
5993  """__repr__(HarmonicDistancePairScore self) -> std::string"""
5994  return _IMP_core.HarmonicDistancePairScore___repr__(self)
5995 
5996 
5997  @staticmethod
5998  def get_from(o):
5999  return _object_cast_to_HarmonicDistancePairScore(o)
6000 
6001 HarmonicDistancePairScore_swigregister = _IMP_core.HarmonicDistancePairScore_swigregister
6002 HarmonicDistancePairScore_swigregister(HarmonicDistancePairScore)
6003 
6004 class DistanceRestraint(IMP.Restraint):
6005  """Proxy of C++ IMP::core::DistanceRestraint class."""
6006 
6007  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
6008 
6009  def __init__(self, *args):
6010  """
6011  __init__(IMP::core::DistanceRestraint self, Model m, UnaryFunction score_func, _ParticleIndexAdaptor a, _ParticleIndexAdaptor b, std::string name) -> DistanceRestraint
6012  __init__(IMP::core::DistanceRestraint self, Model m, UnaryFunction score_func, _ParticleIndexAdaptor a, _ParticleIndexAdaptor b) -> DistanceRestraint
6013  """
6014  this = _IMP_core.new_DistanceRestraint(*args)
6015  try:
6016  self.this.append(this)
6017  except __builtin__.Exception:
6018  self.this = this
6019 
6020  def get_version_info(self):
6021  """get_version_info(DistanceRestraint self) -> VersionInfo"""
6022  return _IMP_core.DistanceRestraint_get_version_info(self)
6023 
6024 
6025  def __str__(self):
6026  """__str__(DistanceRestraint self) -> std::string"""
6027  return _IMP_core.DistanceRestraint___str__(self)
6028 
6029 
6030  def __repr__(self):
6031  """__repr__(DistanceRestraint self) -> std::string"""
6032  return _IMP_core.DistanceRestraint___repr__(self)
6033 
6034 
6035  @staticmethod
6036  def get_from(o):
6037  return _object_cast_to_DistanceRestraint(o)
6038 
6039 DistanceRestraint_swigregister = _IMP_core.DistanceRestraint_swigregister
6040 DistanceRestraint_swigregister(DistanceRestraint)
6041 
6042 class SphereDistanceToSingletonScore(IMP.SingletonScore):
6043  """Proxy of C++ IMP::core::SphereDistanceToSingletonScore class."""
6044 
6045  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
6046 
6047  def __init__(self, f, pt):
6048  """__init__(IMP::core::SphereDistanceToSingletonScore self, UnaryFunction f, Vector3D pt) -> SphereDistanceToSingletonScore"""
6049  this = _IMP_core.new_SphereDistanceToSingletonScore(f, pt)
6050  try:
6051  self.this.append(this)
6052  except __builtin__.Exception:
6053  self.this = this
6054 
6055  def do_get_inputs(self, m, pis):
6056  """do_get_inputs(SphereDistanceToSingletonScore self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
6057  return _IMP_core.SphereDistanceToSingletonScore_do_get_inputs(self, m, pis)
6058 
6059 
6060  def get_version_info(self):
6061  """get_version_info(SphereDistanceToSingletonScore self) -> VersionInfo"""
6062  return _IMP_core.SphereDistanceToSingletonScore_get_version_info(self)
6063 
6064 
6065  def __str__(self):
6066  """__str__(SphereDistanceToSingletonScore self) -> std::string"""
6067  return _IMP_core.SphereDistanceToSingletonScore___str__(self)
6068 
6069 
6070  def __repr__(self):
6071  """__repr__(SphereDistanceToSingletonScore self) -> std::string"""
6072  return _IMP_core.SphereDistanceToSingletonScore___repr__(self)
6073 
6074 
6075  @staticmethod
6076  def get_from(o):
6077  return _object_cast_to_SphereDistanceToSingletonScore(o)
6078 
6079 SphereDistanceToSingletonScore_swigregister = _IMP_core.SphereDistanceToSingletonScore_swigregister
6080 SphereDistanceToSingletonScore_swigregister(SphereDistanceToSingletonScore)
6081 
6082 class ExcludedVolumeRestraint(IMP.Restraint):
6083  """Proxy of C++ IMP::core::ExcludedVolumeRestraint class."""
6084 
6085  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
6086 
6087  def __init__(self, *args):
6088  """
6089  __init__(IMP::core::ExcludedVolumeRestraint self, _SingletonContainerAdaptor sc, double k=1, double slack=10, std::string name) -> ExcludedVolumeRestraint
6090  __init__(IMP::core::ExcludedVolumeRestraint self, _SingletonContainerAdaptor sc, double k=1, double slack=10) -> ExcludedVolumeRestraint
6091  __init__(IMP::core::ExcludedVolumeRestraint self, _SingletonContainerAdaptor sc, double k=1) -> ExcludedVolumeRestraint
6092  __init__(IMP::core::ExcludedVolumeRestraint self, _SingletonContainerAdaptor sc) -> ExcludedVolumeRestraint
6093  """
6094  this = _IMP_core.new_ExcludedVolumeRestraint(*args)
6095  try:
6096  self.this.append(this)
6097  except __builtin__.Exception:
6098  self.this = this
6099 
6100  def do_get_inputs(self):
6101  """do_get_inputs(ExcludedVolumeRestraint self) -> IMP::ModelObjectsTemp"""
6102  return _IMP_core.ExcludedVolumeRestraint_do_get_inputs(self)
6103 
6104 
6105  def get_version_info(self):
6106  """get_version_info(ExcludedVolumeRestraint self) -> VersionInfo"""
6107  return _IMP_core.ExcludedVolumeRestraint_get_version_info(self)
6108 
6109 
6110  def do_create_decomposition(self):
6111  """do_create_decomposition(ExcludedVolumeRestraint self) -> IMP::Restraints"""
6112  return _IMP_core.ExcludedVolumeRestraint_do_create_decomposition(self)
6113 
6114 
6115  def do_create_current_decomposition(self):
6116  """do_create_current_decomposition(ExcludedVolumeRestraint self) -> IMP::Restraints"""
6117  return _IMP_core.ExcludedVolumeRestraint_do_create_current_decomposition(self)
6118 
6119 
6120  def get_indexes(self):
6121  """get_indexes(ExcludedVolumeRestraint self) -> IMP::ParticleIndexPairs const &"""
6122  return _IMP_core.ExcludedVolumeRestraint_get_indexes(self)
6123 
6124 
6125  def remove_pair_filter(self, d):
6126  """remove_pair_filter(ExcludedVolumeRestraint self, PairPredicate d)"""
6127  return _IMP_core.ExcludedVolumeRestraint_remove_pair_filter(self, d)
6128 
6129 
6130  def remove_pair_filters(self, d):
6131  """remove_pair_filters(ExcludedVolumeRestraint self, IMP::PairPredicates const & d)"""
6132  return _IMP_core.ExcludedVolumeRestraint_remove_pair_filters(self, d)
6133 
6134 
6135  def set_pair_filters(self, ps):
6136  """set_pair_filters(ExcludedVolumeRestraint self, IMP::PairPredicates const & ps)"""
6137  return _IMP_core.ExcludedVolumeRestraint_set_pair_filters(self, ps)
6138 
6139 
6140  def set_pair_filters_order(self, objs):
6141  """set_pair_filters_order(ExcludedVolumeRestraint self, IMP::PairPredicates const & objs)"""
6142  return _IMP_core.ExcludedVolumeRestraint_set_pair_filters_order(self, objs)
6143 
6144 
6145  def add_pair_filter(self, obj):
6146  """add_pair_filter(ExcludedVolumeRestraint self, PairPredicate obj) -> unsigned int"""
6147  return _IMP_core.ExcludedVolumeRestraint_add_pair_filter(self, obj)
6148 
6149 
6150  def add_pair_filters(self, objs):
6151  """add_pair_filters(ExcludedVolumeRestraint self, IMP::PairPredicates const & objs)"""
6152  return _IMP_core.ExcludedVolumeRestraint_add_pair_filters(self, objs)
6153 
6154 
6155  def clear_pair_filters(self):
6156  """clear_pair_filters(ExcludedVolumeRestraint self)"""
6157  return _IMP_core.ExcludedVolumeRestraint_clear_pair_filters(self)
6158 
6159 
6160  def get_number_of_pair_filters(self):
6161  """get_number_of_pair_filters(ExcludedVolumeRestraint self) -> unsigned int"""
6162  return _IMP_core.ExcludedVolumeRestraint_get_number_of_pair_filters(self)
6163 
6164 
6165  def get_has_pair_filters(self):
6166  """get_has_pair_filters(ExcludedVolumeRestraint self) -> bool"""
6167  return _IMP_core.ExcludedVolumeRestraint_get_has_pair_filters(self)
6168 
6169 
6170  def get_pair_filter(self, i):
6171  """get_pair_filter(ExcludedVolumeRestraint self, unsigned int i) -> PairPredicate"""
6172  return _IMP_core.ExcludedVolumeRestraint_get_pair_filter(self, i)
6173 
6174 
6175  def get_pair_filters(self):
6176  """get_pair_filters(ExcludedVolumeRestraint self) -> IMP::PairPredicates"""
6177  return _IMP_core.ExcludedVolumeRestraint_get_pair_filters(self)
6178 
6179 
6180  def reserve_pair_filters(self, sz):
6181  """reserve_pair_filters(ExcludedVolumeRestraint self, unsigned int sz)"""
6182  return _IMP_core.ExcludedVolumeRestraint_reserve_pair_filters(self, sz)
6183 
6184 
6185  def __str__(self):
6186  """__str__(ExcludedVolumeRestraint self) -> std::string"""
6187  return _IMP_core.ExcludedVolumeRestraint___str__(self)
6188 
6189 
6190  def __repr__(self):
6191  """__repr__(ExcludedVolumeRestraint self) -> std::string"""
6192  return _IMP_core.ExcludedVolumeRestraint___repr__(self)
6193 
6194 
6195  @staticmethod
6196  def get_from(o):
6197  return _object_cast_to_ExcludedVolumeRestraint(o)
6198 
6199 ExcludedVolumeRestraint_swigregister = _IMP_core.ExcludedVolumeRestraint_swigregister
6200 ExcludedVolumeRestraint_swigregister(ExcludedVolumeRestraint)
6201 
6202 class FixedRefiner(IMP.Refiner):
6203  """Proxy of C++ IMP::core::FixedRefiner class."""
6204 
6205  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
6206 
6207  def __init__(self, *args):
6208  """
6209  __init__(IMP::core::FixedRefiner self, IMP::ParticlesTemp const & ps) -> FixedRefiner
6210  __init__(IMP::core::FixedRefiner self, Model m, IMP::ParticleIndexes const & pis) -> FixedRefiner
6211  """
6212  this = _IMP_core.new_FixedRefiner(*args)
6213  try:
6214  self.this.append(this)
6215  except __builtin__.Exception:
6216  self.this = this
6217 
6218  def do_get_inputs(self, m, pis):
6219  """do_get_inputs(FixedRefiner self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
6220  return _IMP_core.FixedRefiner_do_get_inputs(self, m, pis)
6221 
6222 
6223  def get_version_info(self):
6224  """get_version_info(FixedRefiner self) -> VersionInfo"""
6225  return _IMP_core.FixedRefiner_get_version_info(self)
6226 
6227 
6228  def __str__(self):
6229  """__str__(FixedRefiner self) -> std::string"""
6230  return _IMP_core.FixedRefiner___str__(self)
6231 
6232 
6233  def __repr__(self):
6234  """__repr__(FixedRefiner self) -> std::string"""
6235  return _IMP_core.FixedRefiner___repr__(self)
6236 
6237 
6238  @staticmethod
6239  def get_from(o):
6240  return _object_cast_to_FixedRefiner(o)
6241 
6242 FixedRefiner_swigregister = _IMP_core.FixedRefiner_swigregister
6243 FixedRefiner_swigregister(FixedRefiner)
6244 
6245 class GridClosePairsFinder(ClosePairsFinder):
6246  """Proxy of C++ IMP::core::GridClosePairsFinder class."""
6247 
6248  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
6249 
6250  def __init__(self):
6251  """__init__(IMP::core::GridClosePairsFinder self) -> GridClosePairsFinder"""
6252  this = _IMP_core.new_GridClosePairsFinder()
6253  try:
6254  self.this.append(this)
6255  except __builtin__.Exception:
6256  self.this = this
6257 
6258  def get_close_pairs(self, *args):
6259  """
6260  get_close_pairs(GridClosePairsFinder self, IMP::algebra::BoundingBox3Ds const & bbs) -> IMP::IntPairs
6261  get_close_pairs(GridClosePairsFinder self, IMP::algebra::BoundingBox3Ds const & bas, IMP::algebra::BoundingBox3Ds const & bbs) -> IMP::IntPairs
6262  get_close_pairs(GridClosePairsFinder self, Model m, IMP::ParticleIndexes const & pc) -> IMP::ParticleIndexPairs
6263  get_close_pairs(GridClosePairsFinder self, Model m, IMP::ParticleIndexes const & pca, IMP::ParticleIndexes const & pcb) -> IMP::ParticleIndexPairs
6264  """
6265  return _IMP_core.GridClosePairsFinder_get_close_pairs(self, *args)
6266 
6267 
6268  def do_get_inputs(self, m, pis):
6269  """do_get_inputs(GridClosePairsFinder self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
6270  return _IMP_core.GridClosePairsFinder_do_get_inputs(self, m, pis)
6271 
6272 
6273  def get_version_info(self):
6274  """get_version_info(GridClosePairsFinder self) -> VersionInfo"""
6275  return _IMP_core.GridClosePairsFinder_get_version_info(self)
6276 
6277 
6278  def __str__(self):
6279  """__str__(GridClosePairsFinder self) -> std::string"""
6280  return _IMP_core.GridClosePairsFinder___str__(self)
6281 
6282 
6283  def __repr__(self):
6284  """__repr__(GridClosePairsFinder self) -> std::string"""
6285  return _IMP_core.GridClosePairsFinder___repr__(self)
6286 
6287 
6288  @staticmethod
6289  def get_from(o):
6290  return _object_cast_to_GridClosePairsFinder(o)
6291 
6292 GridClosePairsFinder_swigregister = _IMP_core.GridClosePairsFinder_swigregister
6293 GridClosePairsFinder_swigregister(GridClosePairsFinder)
6294 
6295 class Harmonic(IMP.UnaryFunction):
6296  """Proxy of C++ IMP::core::Harmonic class."""
6297 
6298  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
6299 
6300  def __init__(self, mean, k):
6301  """__init__(IMP::core::Harmonic self, IMP::Float mean, IMP::Float k) -> Harmonic"""
6302  this = _IMP_core.new_Harmonic(mean, k)
6303  try:
6304  self.this.append(this)
6305  except __builtin__.Exception:
6306  self.this = this
6307 
6308  def get_version_info(self):
6309  """get_version_info(Harmonic self) -> VersionInfo"""
6310  return _IMP_core.Harmonic_get_version_info(self)
6311 
6312 
6313  def get_mean(self):
6314  """get_mean(Harmonic self) -> IMP::Float"""
6315  return _IMP_core.Harmonic_get_mean(self)
6316 
6317 
6318  def get_k(self):
6319  """get_k(Harmonic self) -> IMP::Float"""
6320  return _IMP_core.Harmonic_get_k(self)
6321 
6322 
6323  def set_mean(self, mean):
6324  """set_mean(Harmonic self, IMP::Float mean)"""
6325  return _IMP_core.Harmonic_set_mean(self, mean)
6326 
6327 
6328  def set_k(self, k):
6329  """set_k(Harmonic self, IMP::Float k)"""
6330  return _IMP_core.Harmonic_set_k(self, k)
6331 
6332 
6333  def get_k_from_standard_deviation(sd, t=297.15):
6334  """
6335  get_k_from_standard_deviation(IMP::Float sd, IMP::Float t=297.15) -> IMP::Float
6336  get_k_from_standard_deviation(IMP::Float sd) -> IMP::Float
6337  """
6338  return _IMP_core.Harmonic_get_k_from_standard_deviation(sd, t)
6339 
6340  get_k_from_standard_deviation = staticmethod(get_k_from_standard_deviation)
6341 
6342  def __str__(self):
6343  """__str__(Harmonic self) -> std::string"""
6344  return _IMP_core.Harmonic___str__(self)
6345 
6346 
6347  def __repr__(self):
6348  """__repr__(Harmonic self) -> std::string"""
6349  return _IMP_core.Harmonic___repr__(self)
6350 
6351 
6352  @staticmethod
6353  def get_from(o):
6354  return _object_cast_to_Harmonic(o)
6355 
6356 Harmonic_swigregister = _IMP_core.Harmonic_swigregister
6357 Harmonic_swigregister(Harmonic)
6358 
6359 def Harmonic_get_k_from_standard_deviation(sd, t=297.15):
6360  """
6361  get_k_from_standard_deviation(IMP::Float sd, IMP::Float t=297.15) -> IMP::Float
6362  Harmonic_get_k_from_standard_deviation(IMP::Float sd) -> IMP::Float
6363  """
6364  return _IMP_core.Harmonic_get_k_from_standard_deviation(sd, t)
6365 
6366 class HarmonicWell(IMP.UnaryFunction):
6367  """Proxy of C++ IMP::core::HarmonicWell class."""
6368 
6369  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
6370 
6371  def __init__(self, well, k):
6372  """__init__(IMP::core::HarmonicWell self, IMP::FloatRange const & well, double k) -> HarmonicWell"""
6373  this = _IMP_core.new_HarmonicWell(well, k)
6374  try:
6375  self.this.append(this)
6376  except __builtin__.Exception:
6377  self.this = this
6378 
6379  def get_version_info(self):
6380  """get_version_info(HarmonicWell self) -> VersionInfo"""
6381  return _IMP_core.HarmonicWell_get_version_info(self)
6382 
6383 
6384  def __str__(self):
6385  """__str__(HarmonicWell self) -> std::string"""
6386  return _IMP_core.HarmonicWell___str__(self)
6387 
6388 
6389  def __repr__(self):
6390  """__repr__(HarmonicWell self) -> std::string"""
6391  return _IMP_core.HarmonicWell___repr__(self)
6392 
6393 
6394  @staticmethod
6395  def get_from(o):
6396  return _object_cast_to_HarmonicWell(o)
6397 
6398 HarmonicWell_swigregister = _IMP_core.HarmonicWell_swigregister
6399 HarmonicWell_swigregister(HarmonicWell)
6400 
6401 class HarmonicLowerBound(Harmonic):
6402  """Proxy of C++ IMP::core::HarmonicLowerBound class."""
6403 
6404  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
6405 
6406  def __init__(self, mean, k):
6407  """__init__(IMP::core::HarmonicLowerBound self, IMP::Float mean, IMP::Float k) -> HarmonicLowerBound"""
6408  this = _IMP_core.new_HarmonicLowerBound(mean, k)
6409  try:
6410  self.this.append(this)
6411  except __builtin__.Exception:
6412  self.this = this
6413 
6414  def __str__(self):
6415  """__str__(HarmonicLowerBound self) -> std::string"""
6416  return _IMP_core.HarmonicLowerBound___str__(self)
6417 
6418 
6419  def __repr__(self):
6420  """__repr__(HarmonicLowerBound self) -> std::string"""
6421  return _IMP_core.HarmonicLowerBound___repr__(self)
6422 
6423 
6424  @staticmethod
6425  def get_from(o):
6426  return _object_cast_to_HarmonicLowerBound(o)
6427 
6428 HarmonicLowerBound_swigregister = _IMP_core.HarmonicLowerBound_swigregister
6429 HarmonicLowerBound_swigregister(HarmonicLowerBound)
6430 
6431 class HarmonicUpperBound(Harmonic):
6432  """Proxy of C++ IMP::core::HarmonicUpperBound class."""
6433 
6434  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
6435 
6436  def __init__(self, mean, k):
6437  """__init__(IMP::core::HarmonicUpperBound self, IMP::Float mean, IMP::Float k) -> HarmonicUpperBound"""
6438  this = _IMP_core.new_HarmonicUpperBound(mean, k)
6439  try:
6440  self.this.append(this)
6441  except __builtin__.Exception:
6442  self.this = this
6443 
6444  def __str__(self):
6445  """__str__(HarmonicUpperBound self) -> std::string"""
6446  return _IMP_core.HarmonicUpperBound___str__(self)
6447 
6448 
6449  def __repr__(self):
6450  """__repr__(HarmonicUpperBound self) -> std::string"""
6451  return _IMP_core.HarmonicUpperBound___repr__(self)
6452 
6453 
6454  @staticmethod
6455  def get_from(o):
6456  return _object_cast_to_HarmonicUpperBound(o)
6457 
6458 HarmonicUpperBound_swigregister = _IMP_core.HarmonicUpperBound_swigregister
6459 HarmonicUpperBound_swigregister(HarmonicUpperBound)
6460 
6461 class WeightedSum(IMP.UnaryFunction):
6462  """Proxy of C++ IMP::core::WeightedSum class."""
6463 
6464  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
6465 
6466  def __init__(self, funcs, weights):
6467  """__init__(IMP::core::WeightedSum self, IMP::UnaryFunctions funcs, IMP::Floats weights) -> WeightedSum"""
6468  this = _IMP_core.new_WeightedSum(funcs, weights)
6469  try:
6470  self.this.append(this)
6471  except __builtin__.Exception:
6472  self.this = this
6473 
6474  def get_function_number(self):
6475  """get_function_number(WeightedSum self) -> unsigned int"""
6476  return _IMP_core.WeightedSum_get_function_number(self)
6477 
6478 
6479  def set_weights(self, weights):
6480  """set_weights(WeightedSum self, IMP::Floats weights)"""
6481  return _IMP_core.WeightedSum_set_weights(self, weights)
6482 
6483 
6484  def get_weights(self):
6485  """get_weights(WeightedSum self) -> IMP::Floats"""
6486  return _IMP_core.WeightedSum_get_weights(self)
6487 
6488 
6489  def get_weight(self, i):
6490  """get_weight(WeightedSum self, unsigned int i) -> double"""
6491  return _IMP_core.WeightedSum_get_weight(self, i)
6492 
6493 
6494  def get_function(self, i):
6495  """get_function(WeightedSum self, unsigned int i) -> UnaryFunction"""
6496  return _IMP_core.WeightedSum_get_function(self, i)
6497 
6498 
6499  def get_version_info(self):
6500  """get_version_info(WeightedSum self) -> VersionInfo"""
6501  return _IMP_core.WeightedSum_get_version_info(self)
6502 
6503 
6504  def __str__(self):
6505  """__str__(WeightedSum self) -> std::string"""
6506  return _IMP_core.WeightedSum___str__(self)
6507 
6508 
6509  def __repr__(self):
6510  """__repr__(WeightedSum self) -> std::string"""
6511  return _IMP_core.WeightedSum___repr__(self)
6512 
6513 
6514  @staticmethod
6515  def get_from(o):
6516  return _object_cast_to_WeightedSum(o)
6517 
6518 WeightedSum_swigregister = _IMP_core.WeightedSum_swigregister
6519 WeightedSum_swigregister(WeightedSum)
6520 
6521 class WeightedSumOfExponential(IMP.UnaryFunction):
6522  """Proxy of C++ IMP::core::WeightedSumOfExponential class."""
6523 
6524  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
6525 
6526  def __init__(self, funcs, weights, denom=1.0):
6527  """
6528  __init__(IMP::core::WeightedSumOfExponential self, IMP::UnaryFunctions funcs, IMP::Floats weights, IMP::Float denom=1.0) -> WeightedSumOfExponential
6529  __init__(IMP::core::WeightedSumOfExponential self, IMP::UnaryFunctions funcs, IMP::Floats weights) -> WeightedSumOfExponential
6530  """
6531  this = _IMP_core.new_WeightedSumOfExponential(funcs, weights, denom)
6532  try:
6533  self.this.append(this)
6534  except __builtin__.Exception:
6535  self.this = this
6536 
6537  def get_function_number(self):
6538  """get_function_number(WeightedSumOfExponential self) -> unsigned int"""
6539  return _IMP_core.WeightedSumOfExponential_get_function_number(self)
6540 
6541 
6542  def set_weights(self, weights):
6543  """set_weights(WeightedSumOfExponential self, IMP::Floats weights)"""
6544  return _IMP_core.WeightedSumOfExponential_set_weights(self, weights)
6545 
6546 
6547  def get_weights(self):
6548  """get_weights(WeightedSumOfExponential self) -> IMP::Floats"""
6549  return _IMP_core.WeightedSumOfExponential_get_weights(self)
6550 
6551 
6552  def get_weight(self, i):
6553  """get_weight(WeightedSumOfExponential self, unsigned int i) -> double"""
6554  return _IMP_core.WeightedSumOfExponential_get_weight(self, i)
6555 
6556 
6557  def get_function(self, i):
6558  """get_function(WeightedSumOfExponential self, unsigned int i) -> UnaryFunction"""
6559  return _IMP_core.WeightedSumOfExponential_get_function(self, i)
6560 
6561 
6562  def set_denominator(self, denom):
6563  """set_denominator(WeightedSumOfExponential self, double denom)"""
6564  return _IMP_core.WeightedSumOfExponential_set_denominator(self, denom)
6565 
6566 
6567  def get_denominator(self):
6568  """get_denominator(WeightedSumOfExponential self) -> double"""
6569  return _IMP_core.WeightedSumOfExponential_get_denominator(self)
6570 
6571 
6572  def get_version_info(self):
6573  """get_version_info(WeightedSumOfExponential self) -> VersionInfo"""
6574  return _IMP_core.WeightedSumOfExponential_get_version_info(self)
6575 
6576 
6577  def __str__(self):
6578  """__str__(WeightedSumOfExponential self) -> std::string"""
6579  return _IMP_core.WeightedSumOfExponential___str__(self)
6580 
6581 
6582  def __repr__(self):
6583  """__repr__(WeightedSumOfExponential self) -> std::string"""
6584  return _IMP_core.WeightedSumOfExponential___repr__(self)
6585 
6586 
6587  @staticmethod
6588  def get_from(o):
6589  return _object_cast_to_WeightedSumOfExponential(o)
6590 
6591 WeightedSumOfExponential_swigregister = _IMP_core.WeightedSumOfExponential_swigregister
6592 WeightedSumOfExponential_swigregister(WeightedSumOfExponential)
6593 
6594 class MSConnectivityRestraint(IMP.Restraint):
6595  """Proxy of C++ IMP::core::MSConnectivityRestraint class."""
6596 
6597  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
6598 
6599  def __init__(self, m, ps, eps=0.1):
6600  """
6601  __init__(IMP::core::MSConnectivityRestraint self, Model m, PairScore ps, double eps=0.1) -> MSConnectivityRestraint
6602  __init__(IMP::core::MSConnectivityRestraint self, Model m, PairScore ps) -> MSConnectivityRestraint
6603  """
6604  this = _IMP_core.new_MSConnectivityRestraint(m, ps, eps)
6605  try:
6606  self.this.append(this)
6607  except __builtin__.Exception:
6608  self.this = this
6609 
6610  def add_type(self, ps):
6611  """add_type(MSConnectivityRestraint self, IMP::ParticlesTemp const & ps) -> unsigned int"""
6612  return _IMP_core.MSConnectivityRestraint_add_type(self, ps)
6613 
6614 
6615  def add_composite(self, *args):
6616  """
6617  add_composite(MSConnectivityRestraint self, IMP::Ints const & components) -> unsigned int
6618  add_composite(MSConnectivityRestraint self, IMP::Ints const & components, unsigned int parent) -> unsigned int
6619  """
6620  return _IMP_core.MSConnectivityRestraint_add_composite(self, *args)
6621 
6622 
6623  def get_connected_pairs(self):
6624  """get_connected_pairs(MSConnectivityRestraint self) -> IMP::ParticlePairsTemp"""
6625  return _IMP_core.MSConnectivityRestraint_get_connected_pairs(self)
6626 
6627 
6628  def get_pair_score(self):
6629  """get_pair_score(MSConnectivityRestraint self) -> PairScore"""
6630  return _IMP_core.MSConnectivityRestraint_get_pair_score(self)
6631 
6632 
6633  def do_create_current_decomposition(self):
6634  """do_create_current_decomposition(MSConnectivityRestraint self) -> IMP::Restraints"""
6635  return _IMP_core.MSConnectivityRestraint_do_create_current_decomposition(self)
6636 
6637 
6638  def do_get_inputs(self):
6639  """do_get_inputs(MSConnectivityRestraint self) -> IMP::ModelObjectsTemp"""
6640  return _IMP_core.MSConnectivityRestraint_do_get_inputs(self)
6641 
6642 
6643  def get_version_info(self):
6644  """get_version_info(MSConnectivityRestraint self) -> VersionInfo"""
6645  return _IMP_core.MSConnectivityRestraint_get_version_info(self)
6646 
6647 
6648  def __str__(self):
6649  """__str__(MSConnectivityRestraint self) -> std::string"""
6650  return _IMP_core.MSConnectivityRestraint___str__(self)
6651 
6652 
6653  def __repr__(self):
6654  """__repr__(MSConnectivityRestraint self) -> std::string"""
6655  return _IMP_core.MSConnectivityRestraint___repr__(self)
6656 
6657 
6658  @staticmethod
6659  def get_from(o):
6660  return _object_cast_to_MSConnectivityRestraint(o)
6661 
6662 MSConnectivityRestraint_swigregister = _IMP_core.MSConnectivityRestraint_swigregister
6663 MSConnectivityRestraint_swigregister(MSConnectivityRestraint)
6664 
6665 class HierarchyTraits(object):
6666  """Proxy of C++ IMP::core::HierarchyTraits class."""
6667 
6668  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
6669 
6670  def __init__(self, *args):
6671  """
6672  __init__(IMP::core::HierarchyTraits self) -> HierarchyTraits
6673  __init__(IMP::core::HierarchyTraits self, std::string name) -> HierarchyTraits
6674  """
6675  this = _IMP_core.new_HierarchyTraits(*args)
6676  try:
6677  self.this.append(this)
6678  except __builtin__.Exception:
6679  self.this = this
6680 
6681  def get_children_key(self):
6682  """get_children_key(HierarchyTraits self) -> ParticleIndexesKey"""
6683  return _IMP_core.HierarchyTraits_get_children_key(self)
6684 
6685 
6686  def get_parent_key(self):
6687  """get_parent_key(HierarchyTraits self) -> ParticleIndexKey"""
6688  return _IMP_core.HierarchyTraits_get_parent_key(self)
6689 
6690 
6691  def __eq__(self, o):
6692  """__eq__(HierarchyTraits self, HierarchyTraits o) -> bool"""
6693  return _IMP_core.HierarchyTraits___eq__(self, o)
6694 
6695 
6696  def show(self, *args):
6697  """
6698  show(HierarchyTraits self, _ostream out)
6699  show(HierarchyTraits self)
6700  """
6701  return _IMP_core.HierarchyTraits_show(self, *args)
6702 
6703 
6704  def __str__(self):
6705  """__str__(HierarchyTraits self) -> std::string"""
6706  return _IMP_core.HierarchyTraits___str__(self)
6707 
6708 
6709  def __repr__(self):
6710  """__repr__(HierarchyTraits self) -> std::string"""
6711  return _IMP_core.HierarchyTraits___repr__(self)
6712 
6713  __swig_destroy__ = _IMP_core.delete_HierarchyTraits
6714  __del__ = lambda self: None
6715 HierarchyTraits_swigregister = _IMP_core.HierarchyTraits_swigregister
6716 HierarchyTraits_swigregister(HierarchyTraits)
6717 
6718 class Hierarchy(IMP.Decorator):
6719  """Proxy of C++ IMP::core::Hierarchy class."""
6720 
6721  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
6722 
6723  def get_decorator_traits(self):
6724  """get_decorator_traits(Hierarchy self) -> HierarchyTraits"""
6725  return _IMP_core.Hierarchy_get_decorator_traits(self)
6726 
6727 
6728  def get_default_decorator_traits():
6729  """get_default_decorator_traits() -> HierarchyTraits"""
6730  return _IMP_core.Hierarchy_get_default_decorator_traits()
6731 
6732  get_default_decorator_traits = staticmethod(get_default_decorator_traits)
6733 
6734  def __init__(self, *args):
6735  """
6736  __init__(IMP::core::Hierarchy self) -> Hierarchy
6737  __init__(IMP::core::Hierarchy self, Model m, ParticleIndex id, HierarchyTraits tr) -> Hierarchy
6738  __init__(IMP::core::Hierarchy self, Model m, ParticleIndex id) -> Hierarchy
6739  __init__(IMP::core::Hierarchy self, _ParticleAdaptor d, HierarchyTraits tr) -> Hierarchy
6740  __init__(IMP::core::Hierarchy self, _ParticleAdaptor d) -> Hierarchy
6741  """
6742  this = _IMP_core.new_Hierarchy(*args)
6743  try:
6744  self.this.append(this)
6745  except __builtin__.Exception:
6746  self.this = this
6747 
6748  def show(self, *args):
6749  """
6750  show(Hierarchy self, _ostream out)
6751  show(Hierarchy self)
6752  """
6753  return _IMP_core.Hierarchy_show(self, *args)
6754 
6755 
6756  def setup_particle(*args):
6757  """
6758  setup_particle(Model m, ParticleIndex pi, HierarchyTraits tr) -> Hierarchy
6759  setup_particle(Model m, ParticleIndex pi) -> Hierarchy
6760  setup_particle(_ParticleAdaptor d, HierarchyTraits tr) -> Hierarchy
6761  setup_particle(_ParticleAdaptor d) -> Hierarchy
6762  setup_particle(Model m, ParticleIndex pi, IMP::ParticleIndexes children, HierarchyTraits tr) -> Hierarchy
6763  setup_particle(Model m, ParticleIndex pi, IMP::ParticleIndexes children) -> Hierarchy
6764  setup_particle(_ParticleAdaptor d, IMP::ParticleIndexes children, HierarchyTraits tr) -> Hierarchy
6765  setup_particle(_ParticleAdaptor d, IMP::ParticleIndexes children) -> Hierarchy
6766  setup_particle(Model m, ParticleIndex pi, IMP::ParticlesTemp children, HierarchyTraits tr) -> Hierarchy
6767  setup_particle(Model m, ParticleIndex pi, IMP::ParticlesTemp children) -> Hierarchy
6768  setup_particle(_ParticleAdaptor d, IMP::ParticlesTemp children, HierarchyTraits tr) -> Hierarchy
6769  setup_particle(_ParticleAdaptor d, IMP::ParticlesTemp children) -> Hierarchy
6770  """
6771  return _IMP_core.Hierarchy_setup_particle(*args)
6772 
6773  setup_particle = staticmethod(setup_particle)
6774 
6775  def get_is_setup(*args):
6776  """
6777  get_is_setup(_ParticleAdaptor p, HierarchyTraits tr) -> bool
6778  get_is_setup(_ParticleAdaptor p) -> bool
6779  get_is_setup(Model arg1, ParticleIndex arg2, HierarchyTraits arg3) -> bool
6780  get_is_setup(Model arg1, ParticleIndex arg2) -> bool
6781  """
6782  return _IMP_core.Hierarchy_get_is_setup(*args)
6783 
6784  get_is_setup = staticmethod(get_is_setup)
6785 
6786  def get_parent(self):
6787  """get_parent(Hierarchy self) -> Hierarchy"""
6788  return _IMP_core.Hierarchy_get_parent(self)
6789 
6790 
6791  def get_number_of_children(self):
6792  """get_number_of_children(Hierarchy self) -> unsigned int"""
6793  return _IMP_core.Hierarchy_get_number_of_children(self)
6794 
6795 
6796  def get_child(self, i):
6797  """get_child(Hierarchy self, unsigned int i) -> Hierarchy"""
6798  return _IMP_core.Hierarchy_get_child(self, i)
6799 
6800 
6801  def get_children_indexes(self):
6802  """get_children_indexes(Hierarchy self) -> IMP::ParticleIndexes"""
6803  return _IMP_core.Hierarchy_get_children_indexes(self)
6804 
6805 
6806  def get_children(self):
6807  """get_children(Hierarchy self) -> IMP::core::GenericHierarchies"""
6808  return _IMP_core.Hierarchy_get_children(self)
6809 
6810 
6811  def remove_child(self, *args):
6812  """
6813  remove_child(Hierarchy self, unsigned int i)
6814  remove_child(Hierarchy self, Hierarchy h)
6815  """
6816  return _IMP_core.Hierarchy_remove_child(self, *args)
6817 
6818 
6819  def clear_children(self):
6820  """clear_children(Hierarchy self)"""
6821  return _IMP_core.Hierarchy_clear_children(self)
6822 
6823 
6824  def add_child(self, h):
6825  """add_child(Hierarchy self, Hierarchy h)"""
6826  return _IMP_core.Hierarchy_add_child(self, h)
6827 
6828 
6829  def add_child_at(self, h, pos):
6830  """add_child_at(Hierarchy self, Hierarchy h, unsigned int pos)"""
6831  return _IMP_core.Hierarchy_add_child_at(self, h, pos)
6832 
6833 
6834  def get_child_index(self, *args):
6835  """
6836  get_child_index(Hierarchy self, unsigned int i) -> ParticleIndex
6837  get_child_index(Hierarchy self) -> int
6838  """
6839  return _IMP_core.Hierarchy_get_child_index(self, *args)
6840 
6841 
6842  def get_default_traits():
6843  """get_default_traits() -> HierarchyTraits"""
6844  return _IMP_core.Hierarchy_get_default_traits()
6845 
6846  get_default_traits = staticmethod(get_default_traits)
6847 
6848  def get_traits(self):
6849  """get_traits(Hierarchy self) -> HierarchyTraits"""
6850  return _IMP_core.Hierarchy_get_traits(self)
6851 
6852 
6853  def add_attribute(self, *args):
6854  """
6855  add_attribute(Hierarchy self, FloatKey k, IMP::Float v, bool opt)
6856  add_attribute(Hierarchy self, FloatKey a0, IMP::Float a1)
6857  add_attribute(Hierarchy self, IntKey a0, IMP::Int a1)
6858  add_attribute(Hierarchy self, StringKey a0, IMP::String a1)
6859  add_attribute(Hierarchy self, ParticleIndexKey a0, Particle a1)
6860  add_attribute(Hierarchy self, ObjectKey a0, Object a1)
6861  """
6862  return _IMP_core.Hierarchy_add_attribute(self, *args)
6863 
6864 
6865  def get_value(self, *args):
6866  """
6867  get_value(Hierarchy self, FloatKey a0) -> IMP::Float
6868  get_value(Hierarchy self, IntKey a0) -> IMP::Int
6869  get_value(Hierarchy self, StringKey a0) -> IMP::String
6870  get_value(Hierarchy self, ParticleIndexKey a0) -> Particle
6871  get_value(Hierarchy self, ObjectKey a0) -> Object
6872  """
6873  return _IMP_core.Hierarchy_get_value(self, *args)
6874 
6875 
6876  def set_value(self, *args):
6877  """
6878  set_value(Hierarchy self, FloatKey a0, IMP::Float a1)
6879  set_value(Hierarchy self, IntKey a0, IMP::Int a1)
6880  set_value(Hierarchy self, StringKey a0, IMP::String a1)
6881  set_value(Hierarchy self, ParticleIndexKey a0, Particle a1)
6882  set_value(Hierarchy self, ObjectKey a0, Object a1)
6883  """
6884  return _IMP_core.Hierarchy_set_value(self, *args)
6885 
6886 
6887  def remove_attribute(self, *args):
6888  """
6889  remove_attribute(Hierarchy self, FloatKey a0)
6890  remove_attribute(Hierarchy self, IntKey a0)
6891  remove_attribute(Hierarchy self, StringKey a0)
6892  remove_attribute(Hierarchy self, ParticleIndexKey a0)
6893  remove_attribute(Hierarchy self, ObjectKey a0)
6894  """
6895  return _IMP_core.Hierarchy_remove_attribute(self, *args)
6896 
6897 
6898  def has_attribute(self, *args):
6899  """
6900  has_attribute(Hierarchy self, FloatKey a0) -> bool
6901  has_attribute(Hierarchy self, IntKey a0) -> bool
6902  has_attribute(Hierarchy self, StringKey a0) -> bool
6903  has_attribute(Hierarchy self, ParticleIndexKey a0) -> bool
6904  has_attribute(Hierarchy self, ObjectKey a0) -> bool
6905  """
6906  return _IMP_core.Hierarchy_has_attribute(self, *args)
6907 
6908 
6909  def get_derivative(self, a0):
6910  """get_derivative(Hierarchy self, FloatKey a0) -> double"""
6911  return _IMP_core.Hierarchy_get_derivative(self, a0)
6912 
6913 
6914  def get_name(self):
6915  """get_name(Hierarchy self) -> std::string"""
6916  return _IMP_core.Hierarchy_get_name(self)
6917 
6918 
6919  def clear_caches(self):
6920  """clear_caches(Hierarchy self)"""
6921  return _IMP_core.Hierarchy_clear_caches(self)
6922 
6923 
6924  def set_name(self, a0):
6925  """set_name(Hierarchy self, std::string a0)"""
6926  return _IMP_core.Hierarchy_set_name(self, a0)
6927 
6928 
6929  def set_check_level(self, a0):
6930  """set_check_level(Hierarchy self, IMP::CheckLevel a0)"""
6931  return _IMP_core.Hierarchy_set_check_level(self, a0)
6932 
6933 
6934  def add_to_derivative(self, a0, a1, a2):
6935  """add_to_derivative(Hierarchy self, FloatKey a0, double a1, DerivativeAccumulator a2)"""
6936  return _IMP_core.Hierarchy_add_to_derivative(self, a0, a1, a2)
6937 
6938 
6939  def set_is_optimized(self, a0, a1):
6940  """set_is_optimized(Hierarchy self, FloatKey a0, bool a1)"""
6941  return _IMP_core.Hierarchy_set_is_optimized(self, a0, a1)
6942 
6943 
6944  def get_is_optimized(self, a0):
6945  """get_is_optimized(Hierarchy self, FloatKey a0) -> bool"""
6946  return _IMP_core.Hierarchy_get_is_optimized(self, a0)
6947 
6948 
6949  def get_check_level(self):
6950  """get_check_level(Hierarchy self) -> IMP::CheckLevel"""
6951  return _IMP_core.Hierarchy_get_check_level(self)
6952 
6953 
6954  def __eq__(self, *args):
6955  """
6956  __eq__(Hierarchy self, Hierarchy o) -> bool
6957  __eq__(Hierarchy self, Particle d) -> bool
6958  """
6959  return _IMP_core.Hierarchy___eq__(self, *args)
6960 
6961 
6962  def __ne__(self, *args):
6963  """
6964  __ne__(Hierarchy self, Hierarchy o) -> bool
6965  __ne__(Hierarchy self, Particle d) -> bool
6966  """
6967  return _IMP_core.Hierarchy___ne__(self, *args)
6968 
6969 
6970  def __le__(self, *args):
6971  """
6972  __le__(Hierarchy self, Hierarchy o) -> bool
6973  __le__(Hierarchy self, Particle d) -> bool
6974  """
6975  return _IMP_core.Hierarchy___le__(self, *args)
6976 
6977 
6978  def __lt__(self, *args):
6979  """
6980  __lt__(Hierarchy self, Hierarchy o) -> bool
6981  __lt__(Hierarchy self, Particle d) -> bool
6982  """
6983  return _IMP_core.Hierarchy___lt__(self, *args)
6984 
6985 
6986  def __ge__(self, *args):
6987  """
6988  __ge__(Hierarchy self, Hierarchy o) -> bool
6989  __ge__(Hierarchy self, Particle d) -> bool
6990  """
6991  return _IMP_core.Hierarchy___ge__(self, *args)
6992 
6993 
6994  def __gt__(self, *args):
6995  """
6996  __gt__(Hierarchy self, Hierarchy o) -> bool
6997  __gt__(Hierarchy self, Particle d) -> bool
6998  """
6999  return _IMP_core.Hierarchy___gt__(self, *args)
7000 
7001 
7002  def __hash__(self):
7003  """__hash__(Hierarchy self) -> std::size_t"""
7004  return _IMP_core.Hierarchy___hash__(self)
7005 
7006 
7007  def __str__(self):
7008  """__str__(Hierarchy self) -> std::string"""
7009  return _IMP_core.Hierarchy___str__(self)
7010 
7011 
7012  def __repr__(self):
7013  """__repr__(Hierarchy self) -> std::string"""
7014  return _IMP_core.Hierarchy___repr__(self)
7015 
7016  __swig_destroy__ = _IMP_core.delete_Hierarchy
7017  __del__ = lambda self: None
7018 Hierarchy_swigregister = _IMP_core.Hierarchy_swigregister
7019 Hierarchy_swigregister(Hierarchy)
7020 
7021 def Hierarchy_get_default_decorator_traits():
7022  """Hierarchy_get_default_decorator_traits() -> HierarchyTraits"""
7023  return _IMP_core.Hierarchy_get_default_decorator_traits()
7024 
7025 def Hierarchy_setup_particle(*args):
7026  """
7027  setup_particle(Model m, ParticleIndex pi, HierarchyTraits tr) -> Hierarchy
7028  setup_particle(Model m, ParticleIndex pi) -> Hierarchy
7029  setup_particle(_ParticleAdaptor d, HierarchyTraits tr) -> Hierarchy
7030  setup_particle(_ParticleAdaptor d) -> Hierarchy
7031  setup_particle(Model m, ParticleIndex pi, IMP::ParticleIndexes children, HierarchyTraits tr) -> Hierarchy
7032  setup_particle(Model m, ParticleIndex pi, IMP::ParticleIndexes children) -> Hierarchy
7033  setup_particle(_ParticleAdaptor d, IMP::ParticleIndexes children, HierarchyTraits tr) -> Hierarchy
7034  setup_particle(_ParticleAdaptor d, IMP::ParticleIndexes children) -> Hierarchy
7035  setup_particle(Model m, ParticleIndex pi, IMP::ParticlesTemp children, HierarchyTraits tr) -> Hierarchy
7036  setup_particle(Model m, ParticleIndex pi, IMP::ParticlesTemp children) -> Hierarchy
7037  setup_particle(_ParticleAdaptor d, IMP::ParticlesTemp children, HierarchyTraits tr) -> Hierarchy
7038  Hierarchy_setup_particle(_ParticleAdaptor d, IMP::ParticlesTemp children) -> Hierarchy
7039  """
7040  return _IMP_core.Hierarchy_setup_particle(*args)
7041 
7042 def Hierarchy_get_is_setup(*args):
7043  """
7044  get_is_setup(_ParticleAdaptor p, HierarchyTraits tr) -> bool
7045  get_is_setup(_ParticleAdaptor p) -> bool
7046  get_is_setup(Model arg1, ParticleIndex arg2, HierarchyTraits arg3) -> bool
7047  Hierarchy_get_is_setup(Model arg2, ParticleIndex arg3) -> bool
7048  """
7049  return _IMP_core.Hierarchy_get_is_setup(*args)
7050 
7051 def Hierarchy_get_default_traits():
7052  """Hierarchy_get_default_traits() -> HierarchyTraits"""
7053  return _IMP_core.Hierarchy_get_default_traits()
7054 
7055 class HierarchyVisitor(object):
7056  """Proxy of C++ IMP::core::HierarchyVisitor class."""
7057 
7058  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
7059  __repr__ = _swig_repr
7060 
7061  def __init__(self):
7062  """__init__(IMP::core::HierarchyVisitor self) -> HierarchyVisitor"""
7063  if self.__class__ == HierarchyVisitor:
7064  _self = None
7065  else:
7066  _self = self
7067  this = _IMP_core.new_HierarchyVisitor(_self, )
7068  try:
7069  self.this.append(this)
7070  except __builtin__.Exception:
7071  self.this = this
7072 
7073  if self.__class__ != HierarchyVisitor:
7074  _director_objects.register(self)
7075 
7076 
7077 
7078 
7079  def __call__(self, p):
7080  """__call__(HierarchyVisitor self, Hierarchy p) -> bool"""
7081  return _IMP_core.HierarchyVisitor___call__(self, p)
7082 
7083  __swig_destroy__ = _IMP_core.delete_HierarchyVisitor
7084  __del__ = lambda self: None
7085  def __disown__(self):
7086  self.this.disown()
7087  _IMP_core.disown_HierarchyVisitor(self)
7088  return weakref_proxy(self)
7089 HierarchyVisitor_swigregister = _IMP_core.HierarchyVisitor_swigregister
7090 HierarchyVisitor_swigregister(HierarchyVisitor)
7091 
7092 class ModifierVisitor(HierarchyVisitor):
7093  """Proxy of C++ IMP::core::ModifierVisitor class."""
7094 
7095  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
7096  __repr__ = _swig_repr
7097 
7098  def __init__(self, sm):
7099  """__init__(IMP::core::ModifierVisitor self, SingletonModifier sm) -> ModifierVisitor"""
7100  this = _IMP_core.new_ModifierVisitor(sm)
7101  try:
7102  self.this.append(this)
7103  except __builtin__.Exception:
7104  self.this = this
7105  __swig_destroy__ = _IMP_core.delete_ModifierVisitor
7106  __del__ = lambda self: None
7107 ModifierVisitor_swigregister = _IMP_core.ModifierVisitor_swigregister
7108 ModifierVisitor_swigregister(ModifierVisitor)
7109 
7110 class HierarchyCounter(HierarchyVisitor):
7111  """Proxy of C++ IMP::core::HierarchyCounter class."""
7112 
7113  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
7114 
7115  def __init__(self):
7116  """__init__(IMP::core::HierarchyCounter self) -> HierarchyCounter"""
7117  this = _IMP_core.new_HierarchyCounter()
7118  try:
7119  self.this.append(this)
7120  except __builtin__.Exception:
7121  self.this = this
7122 
7123  def get_count(self):
7124  """get_count(HierarchyCounter self) -> unsigned int"""
7125  return _IMP_core.HierarchyCounter_get_count(self)
7126 
7127 
7128  def show(self, *args):
7129  """
7130  show(HierarchyCounter self, _ostream out)
7131  show(HierarchyCounter self)
7132  """
7133  return _IMP_core.HierarchyCounter_show(self, *args)
7134 
7135 
7136  def __str__(self):
7137  """__str__(HierarchyCounter self) -> std::string"""
7138  return _IMP_core.HierarchyCounter___str__(self)
7139 
7140 
7141  def __repr__(self):
7142  """__repr__(HierarchyCounter self) -> std::string"""
7143  return _IMP_core.HierarchyCounter___repr__(self)
7144 
7145  __swig_destroy__ = _IMP_core.delete_HierarchyCounter
7146  __del__ = lambda self: None
7147 HierarchyCounter_swigregister = _IMP_core.HierarchyCounter_swigregister
7148 HierarchyCounter_swigregister(HierarchyCounter)
7149 
7150 
7151 def get_leaves(mhd):
7152  """get_leaves(Hierarchy mhd) -> IMP::core::GenericHierarchies"""
7153  return _IMP_core.get_leaves(mhd)
7154 
7155 def get_internal(mhd):
7156  """get_internal(Hierarchy mhd) -> IMP::core::GenericHierarchies"""
7157  return _IMP_core.get_internal(mhd)
7158 
7159 def get_all_descendants(mhd):
7160  """get_all_descendants(Hierarchy mhd) -> IMP::core::GenericHierarchies"""
7161  return _IMP_core.get_all_descendants(mhd)
7162 
7163 def get_root(h):
7164  """get_root(Hierarchy h) -> Hierarchy"""
7165  return _IMP_core.get_root(h)
7166 
7167 def visit_breadth_first(d, f):
7168  """visit_breadth_first(Hierarchy d, HierarchyVisitor f)"""
7169  return _IMP_core.visit_breadth_first(d, f)
7170 
7171 def visit_depth_first(d, f):
7172  """visit_depth_first(Hierarchy d, HierarchyVisitor f)"""
7173  return _IMP_core.visit_depth_first(d, f)
7174 class LeavesRefiner(IMP.Refiner):
7175  """Proxy of C++ IMP::core::LeavesRefiner class."""
7176 
7177  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
7178 
7179  def __init__(self, tr):
7180  """__init__(IMP::core::LeavesRefiner self, HierarchyTraits tr) -> LeavesRefiner"""
7181  this = _IMP_core.new_LeavesRefiner(tr)
7182  try:
7183  self.this.append(this)
7184  except __builtin__.Exception:
7185  self.this = this
7186 
7187  def do_get_inputs(self, m, pis):
7188  """do_get_inputs(LeavesRefiner self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
7189  return _IMP_core.LeavesRefiner_do_get_inputs(self, m, pis)
7190 
7191 
7192  def get_version_info(self):
7193  """get_version_info(LeavesRefiner self) -> VersionInfo"""
7194  return _IMP_core.LeavesRefiner_get_version_info(self)
7195 
7196 
7197  def __str__(self):
7198  """__str__(LeavesRefiner self) -> std::string"""
7199  return _IMP_core.LeavesRefiner___str__(self)
7200 
7201 
7202  def __repr__(self):
7203  """__repr__(LeavesRefiner self) -> std::string"""
7204  return _IMP_core.LeavesRefiner___repr__(self)
7205 
7206 
7207  @staticmethod
7208  def get_from(o):
7209  return _object_cast_to_LeavesRefiner(o)
7210 
7211 LeavesRefiner_swigregister = _IMP_core.LeavesRefiner_swigregister
7212 LeavesRefiner_swigregister(LeavesRefiner)
7213 
7214 class Linear(IMP.UnaryFunction):
7215  """Proxy of C++ IMP::core::Linear class."""
7216 
7217  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
7218 
7219  def __init__(self, offset, slope):
7220  """__init__(IMP::core::Linear self, double offset, double slope) -> Linear"""
7221  this = _IMP_core.new_Linear(offset, slope)
7222  try:
7223  self.this.append(this)
7224  except __builtin__.Exception:
7225  self.this = this
7226 
7227  def set_slope(self, f):
7228  """set_slope(Linear self, double f)"""
7229  return _IMP_core.Linear_set_slope(self, f)
7230 
7231 
7232  def set_offset(self, f):
7233  """set_offset(Linear self, double f)"""
7234  return _IMP_core.Linear_set_offset(self, f)
7235 
7236 
7237  def get_version_info(self):
7238  """get_version_info(Linear self) -> VersionInfo"""
7239  return _IMP_core.Linear_get_version_info(self)
7240 
7241 
7242  def __str__(self):
7243  """__str__(Linear self) -> std::string"""
7244  return _IMP_core.Linear___str__(self)
7245 
7246 
7247  def __repr__(self):
7248  """__repr__(Linear self) -> std::string"""
7249  return _IMP_core.Linear___repr__(self)
7250 
7251 
7252  @staticmethod
7253  def get_from(o):
7254  return _object_cast_to_Linear(o)
7255 
7256 Linear_swigregister = _IMP_core.Linear_swigregister
7257 Linear_swigregister(Linear)
7258 
7259 class LogNormalMover(MonteCarloMover):
7260  """Proxy of C++ IMP::core::LogNormalMover class."""
7261 
7262  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
7263 
7264  def __init__(self, *args):
7265  """
7266  __init__(IMP::core::LogNormalMover self, Model m, ParticleIndex pi, IMP::FloatKeys const & vars, double stddev) -> LogNormalMover
7267  __init__(IMP::core::LogNormalMover self, Model m, ParticleIndex pi, double stddev) -> LogNormalMover
7268  __init__(IMP::core::LogNormalMover self, IMP::ParticlesTemp const & sc, IMP::FloatKeys const & vars, IMP::Float sigma) -> LogNormalMover
7269  __init__(IMP::core::LogNormalMover self, IMP::ParticlesTemp const & sc, IMP::Float radius) -> LogNormalMover
7270  """
7271  this = _IMP_core.new_LogNormalMover(*args)
7272  try:
7273  self.this.append(this)
7274  except __builtin__.Exception:
7275  self.this = this
7276 
7277  def set_sigma(self, sigma):
7278  """set_sigma(LogNormalMover self, IMP::Float sigma)"""
7279  return _IMP_core.LogNormalMover_set_sigma(self, sigma)
7280 
7281 
7282  def get_sigma(self):
7283  """get_sigma(LogNormalMover self) -> IMP::Float"""
7284  return _IMP_core.LogNormalMover_get_sigma(self)
7285 
7286 
7287  def get_version_info(self):
7288  """get_version_info(LogNormalMover self) -> VersionInfo"""
7289  return _IMP_core.LogNormalMover_get_version_info(self)
7290 
7291 
7292  def __str__(self):
7293  """__str__(LogNormalMover self) -> std::string"""
7294  return _IMP_core.LogNormalMover___str__(self)
7295 
7296 
7297  def __repr__(self):
7298  """__repr__(LogNormalMover self) -> std::string"""
7299  return _IMP_core.LogNormalMover___repr__(self)
7300 
7301 
7302  @staticmethod
7303  def get_from(o):
7304  return _object_cast_to_LogNormalMover(o)
7305 
7306 LogNormalMover_swigregister = _IMP_core.LogNormalMover_swigregister
7307 LogNormalMover_swigregister(LogNormalMover)
7308 
7309 class IncrementalScoringFunction(IMP.ScoringFunction):
7310  """Proxy of C++ IMP::core::IncrementalScoringFunction class."""
7311 
7312  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
7313 
7314  def __init__(self, *args):
7315  """
7316  __init__(IMP::core::IncrementalScoringFunction self, Model m, IMP::ParticleIndexes const & to_move, IMP::RestraintsTemp const & rs, double weight=1.0, double max, std::string name) -> IncrementalScoringFunction
7317  __init__(IMP::core::IncrementalScoringFunction self, Model m, IMP::ParticleIndexes const & to_move, IMP::RestraintsTemp const & rs, double weight=1.0, double max) -> IncrementalScoringFunction
7318  __init__(IMP::core::IncrementalScoringFunction self, Model m, IMP::ParticleIndexes const & to_move, IMP::RestraintsTemp const & rs, double weight=1.0) -> IncrementalScoringFunction
7319  __init__(IMP::core::IncrementalScoringFunction self, Model m, IMP::ParticleIndexes const & to_move, IMP::RestraintsTemp const & rs) -> IncrementalScoringFunction
7320  """
7321  this = _IMP_core.new_IncrementalScoringFunction(*args)
7322  try:
7323  self.this.append(this)
7324  except __builtin__.Exception:
7325  self.this = this
7326 
7327  def reset_moved_particles(self):
7328  """reset_moved_particles(IncrementalScoringFunction self)"""
7329  return _IMP_core.IncrementalScoringFunction_reset_moved_particles(self)
7330 
7331 
7332  def set_moved_particles(self, p):
7333  """set_moved_particles(IncrementalScoringFunction self, IMP::ParticleIndexes const & p)"""
7334  return _IMP_core.IncrementalScoringFunction_set_moved_particles(self, p)
7335 
7336 
7337  def add_close_pair_score(self, *args):
7338  """
7339  add_close_pair_score(IncrementalScoringFunction self, PairScore ps, double distance, IMP::ParticlesTemp const & particles, IMP::PairPredicates const & filters)
7340  add_close_pair_score(IncrementalScoringFunction self, PairScore ps, double distance, IMP::ParticlesTemp const & particles)
7341  """
7342  return _IMP_core.IncrementalScoringFunction_add_close_pair_score(self, *args)
7343 
7344 
7345  def clear_close_pair_scores(self):
7346  """clear_close_pair_scores(IncrementalScoringFunction self)"""
7347  return _IMP_core.IncrementalScoringFunction_clear_close_pair_scores(self)
7348 
7349 
7350  def get_movable_indexes(self):
7351  """get_movable_indexes(IncrementalScoringFunction self) -> IMP::ParticleIndexes"""
7352  return _IMP_core.IncrementalScoringFunction_get_movable_indexes(self)
7353 
7354 
7355  def do_add_score_and_derivatives(self, sa, ss):
7356  """do_add_score_and_derivatives(IncrementalScoringFunction self, ScoreAccumulator sa, IMP::ScoreStatesTemp const & ss)"""
7357  return _IMP_core.IncrementalScoringFunction_do_add_score_and_derivatives(self, sa, ss)
7358 
7359 
7360  def do_get_inputs(self):
7361  """do_get_inputs(IncrementalScoringFunction self) -> IMP::ModelObjectsTemp"""
7362  return _IMP_core.IncrementalScoringFunction_do_get_inputs(self)
7363 
7364 
7365  def handle_set_has_required_score_states(self, arg2):
7366  """handle_set_has_required_score_states(IncrementalScoringFunction self, bool arg2)"""
7367  return _IMP_core.IncrementalScoringFunction_handle_set_has_required_score_states(self, arg2)
7368 
7369 
7370  def get_version_info(self):
7371  """get_version_info(IncrementalScoringFunction self) -> VersionInfo"""
7372  return _IMP_core.IncrementalScoringFunction_get_version_info(self)
7373 
7374 
7375  def __str__(self):
7376  """__str__(IncrementalScoringFunction self) -> std::string"""
7377  return _IMP_core.IncrementalScoringFunction___str__(self)
7378 
7379 
7380  def __repr__(self):
7381  """__repr__(IncrementalScoringFunction self) -> std::string"""
7382  return _IMP_core.IncrementalScoringFunction___repr__(self)
7383 
7384 
7385  @staticmethod
7386  def get_from(o):
7387  return _object_cast_to_IncrementalScoringFunction(o)
7388 
7389 IncrementalScoringFunction_swigregister = _IMP_core.IncrementalScoringFunction_swigregister
7390 IncrementalScoringFunction_swigregister(IncrementalScoringFunction)
7391 
7392 IMP_CORE_HAS_MONTE_CARLO_MOVER = _IMP_core.IMP_CORE_HAS_MONTE_CARLO_MOVER
7393 class MonteCarlo(IMP.Optimizer):
7394  """Proxy of C++ IMP::core::MonteCarlo class."""
7395 
7396  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
7397 
7398  def __init__(self, m):
7399  """__init__(IMP::core::MonteCarlo self, Model m) -> MonteCarlo"""
7400  this = _IMP_core.new_MonteCarlo(m)
7401  try:
7402  self.this.append(this)
7403  except __builtin__.Exception:
7404  self.this = this
7405 
7406  def get_version_info(self):
7407  """get_version_info(MonteCarlo self) -> VersionInfo"""
7408  return _IMP_core.MonteCarlo_get_version_info(self)
7409 
7410 
7411  def set_return_best(self, tf):
7412  """set_return_best(MonteCarlo self, bool tf)"""
7413  return _IMP_core.MonteCarlo_set_return_best(self, tf)
7414 
7415 
7416  def set_kt(self, t):
7417  """set_kt(MonteCarlo self, IMP::Float t)"""
7418  return _IMP_core.MonteCarlo_set_kt(self, t)
7419 
7420 
7421  def get_kt(self):
7422  """get_kt(MonteCarlo self) -> IMP::Float"""
7423  return _IMP_core.MonteCarlo_get_kt(self)
7424 
7425 
7426  def get_last_accepted_energy(self):
7427  """get_last_accepted_energy(MonteCarlo self) -> double"""
7428  return _IMP_core.MonteCarlo_get_last_accepted_energy(self)
7429 
7430 
7431  def get_best_accepted_energy(self):
7432  """get_best_accepted_energy(MonteCarlo self) -> double"""
7433  return _IMP_core.MonteCarlo_get_best_accepted_energy(self)
7434 
7435 
7436  def get_number_of_downward_steps(self):
7437  """get_number_of_downward_steps(MonteCarlo self) -> unsigned int"""
7438  return _IMP_core.MonteCarlo_get_number_of_downward_steps(self)
7439 
7440 
7441  def get_number_of_upward_steps(self):
7442  """get_number_of_upward_steps(MonteCarlo self) -> unsigned int"""
7443  return _IMP_core.MonteCarlo_get_number_of_upward_steps(self)
7444 
7445 
7446  def get_number_of_proposed_steps(self):
7447  """get_number_of_proposed_steps(MonteCarlo self) -> unsigned int"""
7448  return _IMP_core.MonteCarlo_get_number_of_proposed_steps(self)
7449 
7450 
7451  def get_number_of_accepted_steps(self):
7452  """get_number_of_accepted_steps(MonteCarlo self) -> unsigned int"""
7453  return _IMP_core.MonteCarlo_get_number_of_accepted_steps(self)
7454 
7455 
7456  def reset_statistics(self):
7457  """reset_statistics(MonteCarlo self)"""
7458  return _IMP_core.MonteCarlo_reset_statistics(self)
7459 
7460 
7461  def set_score_threshold(self, s):
7462  """set_score_threshold(MonteCarlo self, double s)"""
7463  return _IMP_core.MonteCarlo_set_score_threshold(self, s)
7464 
7465 
7466  def get_score_threshold(self):
7467  """get_score_threshold(MonteCarlo self) -> double"""
7468  return _IMP_core.MonteCarlo_get_score_threshold(self)
7469 
7470 
7471  def set_maximum_difference(self, d):
7472  """set_maximum_difference(MonteCarlo self, double d)"""
7473  return _IMP_core.MonteCarlo_set_maximum_difference(self, d)
7474 
7475 
7476  def get_maximum_difference(self):
7477  """get_maximum_difference(MonteCarlo self) -> double"""
7478  return _IMP_core.MonteCarlo_get_maximum_difference(self)
7479 
7480 
7481  def remove_mover(self, d):
7482  """remove_mover(MonteCarlo self, MonteCarloMover d)"""
7483  return _IMP_core.MonteCarlo_remove_mover(self, d)
7484 
7485 
7486  def remove_movers(self, d):
7487  """remove_movers(MonteCarlo self, IMP::core::MonteCarloMovers const & d)"""
7488  return _IMP_core.MonteCarlo_remove_movers(self, d)
7489 
7490 
7491  def set_movers(self, ps):
7492  """set_movers(MonteCarlo self, IMP::core::MonteCarloMovers const & ps)"""
7493  return _IMP_core.MonteCarlo_set_movers(self, ps)
7494 
7495 
7496  def set_movers_order(self, objs):
7497  """set_movers_order(MonteCarlo self, IMP::core::MonteCarloMovers const & objs)"""
7498  return _IMP_core.MonteCarlo_set_movers_order(self, objs)
7499 
7500 
7501  def add_mover(self, obj):
7502  """add_mover(MonteCarlo self, MonteCarloMover obj) -> unsigned int"""
7503  return _IMP_core.MonteCarlo_add_mover(self, obj)
7504 
7505 
7506  def add_movers(self, objs):
7507  """add_movers(MonteCarlo self, IMP::core::MonteCarloMovers const & objs)"""
7508  return _IMP_core.MonteCarlo_add_movers(self, objs)
7509 
7510 
7511  def clear_movers(self):
7512  """clear_movers(MonteCarlo self)"""
7513  return _IMP_core.MonteCarlo_clear_movers(self)
7514 
7515 
7516  def get_number_of_movers(self):
7517  """get_number_of_movers(MonteCarlo self) -> unsigned int"""
7518  return _IMP_core.MonteCarlo_get_number_of_movers(self)
7519 
7520 
7521  def get_has_movers(self):
7522  """get_has_movers(MonteCarlo self) -> bool"""
7523  return _IMP_core.MonteCarlo_get_has_movers(self)
7524 
7525 
7526  def get_mover(self, i):
7527  """get_mover(MonteCarlo self, unsigned int i) -> MonteCarloMover"""
7528  return _IMP_core.MonteCarlo_get_mover(self, i)
7529 
7530 
7531  def get_movers(self):
7532  """get_movers(MonteCarlo self) -> IMP::core::MonteCarloMovers"""
7533  return _IMP_core.MonteCarlo_get_movers(self)
7534 
7535 
7536  def reserve_movers(self, sz):
7537  """reserve_movers(MonteCarlo self, unsigned int sz)"""
7538  return _IMP_core.MonteCarlo_reserve_movers(self, sz)
7539 
7540 
7541  def set_incremental_scoring_function(self, isf):
7542  """set_incremental_scoring_function(MonteCarlo self, IncrementalScoringFunction isf)"""
7543  return _IMP_core.MonteCarlo_set_incremental_scoring_function(self, isf)
7544 
7545 
7546  def get_use_incremental_scoring_function(self):
7547  """get_use_incremental_scoring_function(MonteCarlo self) -> bool"""
7548  return _IMP_core.MonteCarlo_get_use_incremental_scoring_function(self)
7549 
7550 
7551  def get_incremental_scoring_function(self):
7552  """get_incremental_scoring_function(MonteCarlo self) -> IncrementalScoringFunction"""
7553  return _IMP_core.MonteCarlo_get_incremental_scoring_function(self)
7554 
7555 
7556  def __str__(self):
7557  """__str__(MonteCarlo self) -> std::string"""
7558  return _IMP_core.MonteCarlo___str__(self)
7559 
7560 
7561  def __repr__(self):
7562  """__repr__(MonteCarlo self) -> std::string"""
7563  return _IMP_core.MonteCarlo___repr__(self)
7564 
7565 
7566  @staticmethod
7567  def get_from(o):
7568  return _object_cast_to_MonteCarlo(o)
7569 
7570 MonteCarlo_swigregister = _IMP_core.MonteCarlo_swigregister
7571 MonteCarlo_swigregister(MonteCarlo)
7572 
7573 class MonteCarloWithLocalOptimization(MonteCarlo):
7574  """Proxy of C++ IMP::core::MonteCarloWithLocalOptimization class."""
7575 
7576  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
7577 
7578  def __init__(self, opt, steps):
7579  """__init__(IMP::core::MonteCarloWithLocalOptimization self, Optimizer opt, unsigned int steps) -> MonteCarloWithLocalOptimization"""
7580  this = _IMP_core.new_MonteCarloWithLocalOptimization(opt, steps)
7581  try:
7582  self.this.append(this)
7583  except __builtin__.Exception:
7584  self.this = this
7585 
7586  def get_number_of_steps(self):
7587  """get_number_of_steps(MonteCarloWithLocalOptimization self) -> unsigned int"""
7588  return _IMP_core.MonteCarloWithLocalOptimization_get_number_of_steps(self)
7589 
7590 
7591  def get_local_optimizer(self):
7592  """get_local_optimizer(MonteCarloWithLocalOptimization self) -> Optimizer"""
7593  return _IMP_core.MonteCarloWithLocalOptimization_get_local_optimizer(self)
7594 
7595 
7596  def __str__(self):
7597  """__str__(MonteCarloWithLocalOptimization self) -> std::string"""
7598  return _IMP_core.MonteCarloWithLocalOptimization___str__(self)
7599 
7600 
7601  def __repr__(self):
7602  """__repr__(MonteCarloWithLocalOptimization self) -> std::string"""
7603  return _IMP_core.MonteCarloWithLocalOptimization___repr__(self)
7604 
7605 
7606  @staticmethod
7607  def get_from(o):
7608  return _object_cast_to_MonteCarloWithLocalOptimization(o)
7609 
7610 MonteCarloWithLocalOptimization_swigregister = _IMP_core.MonteCarloWithLocalOptimization_swigregister
7611 MonteCarloWithLocalOptimization_swigregister(MonteCarloWithLocalOptimization)
7612 
7613 class MonteCarloWithBasinHopping(MonteCarloWithLocalOptimization):
7614  """Proxy of C++ IMP::core::MonteCarloWithBasinHopping class."""
7615 
7616  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
7617 
7618  def __init__(self, opt, ns):
7619  """__init__(IMP::core::MonteCarloWithBasinHopping self, Optimizer opt, unsigned int ns) -> MonteCarloWithBasinHopping"""
7620  this = _IMP_core.new_MonteCarloWithBasinHopping(opt, ns)
7621  try:
7622  self.this.append(this)
7623  except __builtin__.Exception:
7624  self.this = this
7625 
7626  def __str__(self):
7627  """__str__(MonteCarloWithBasinHopping self) -> std::string"""
7628  return _IMP_core.MonteCarloWithBasinHopping___str__(self)
7629 
7630 
7631  def __repr__(self):
7632  """__repr__(MonteCarloWithBasinHopping self) -> std::string"""
7633  return _IMP_core.MonteCarloWithBasinHopping___repr__(self)
7634 
7635 
7636  @staticmethod
7637  def get_from(o):
7638  return _object_cast_to_MonteCarloWithBasinHopping(o)
7639 
7640 MonteCarloWithBasinHopping_swigregister = _IMP_core.MonteCarloWithBasinHopping_swigregister
7641 MonteCarloWithBasinHopping_swigregister(MonteCarloWithBasinHopping)
7642 
7643 class NeighborsTable(IMP.ScoreState):
7644  """Proxy of C++ IMP::core::NeighborsTable class."""
7645 
7646  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
7647 
7648  def __init__(self, *args):
7649  """
7650  __init__(IMP::core::NeighborsTable self, PairContainer input, std::string name) -> NeighborsTable
7651  __init__(IMP::core::NeighborsTable self, PairContainer input) -> NeighborsTable
7652  """
7653  this = _IMP_core.new_NeighborsTable(*args)
7654  try:
7655  self.this.append(this)
7656  except __builtin__.Exception:
7657  self.this = this
7658 
7659  def get_neighbors(self, pi):
7660  """get_neighbors(NeighborsTable self, ParticleIndex pi) -> IMP::ParticleIndexes const &"""
7661  return _IMP_core.NeighborsTable_get_neighbors(self, pi)
7662 
7663 
7664  def get_version_info(self):
7665  """get_version_info(NeighborsTable self) -> VersionInfo"""
7666  return _IMP_core.NeighborsTable_get_version_info(self)
7667 
7668 
7669  def __str__(self):
7670  """__str__(NeighborsTable self) -> std::string"""
7671  return _IMP_core.NeighborsTable___str__(self)
7672 
7673 
7674  def __repr__(self):
7675  """__repr__(NeighborsTable self) -> std::string"""
7676  return _IMP_core.NeighborsTable___repr__(self)
7677 
7678 
7679  @staticmethod
7680  def get_from(o):
7681  return _object_cast_to_NeighborsTable(o)
7682 
7683 NeighborsTable_swigregister = _IMP_core.NeighborsTable_swigregister
7684 NeighborsTable_swigregister(NeighborsTable)
7685 
7686 class NormalMover(MonteCarloMover):
7687  """Proxy of C++ IMP::core::NormalMover class."""
7688 
7689  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
7690 
7691  def __init__(self, *args):
7692  """
7693  __init__(IMP::core::NormalMover self, Model m, ParticleIndex pi, IMP::FloatKeys const & vars, double stddev) -> NormalMover
7694  __init__(IMP::core::NormalMover self, Model m, ParticleIndex pi, double stddev) -> NormalMover
7695  __init__(IMP::core::NormalMover self, IMP::ParticlesTemp const & sc, IMP::FloatKeys const & vars, IMP::Float sigma) -> NormalMover
7696  __init__(IMP::core::NormalMover self, IMP::ParticlesTemp const & sc, IMP::Float radius) -> NormalMover
7697  """
7698  this = _IMP_core.new_NormalMover(*args)
7699  try:
7700  self.this.append(this)
7701  except __builtin__.Exception:
7702  self.this = this
7703 
7704  def set_sigma(self, sigma):
7705  """set_sigma(NormalMover self, IMP::Float sigma)"""
7706  return _IMP_core.NormalMover_set_sigma(self, sigma)
7707 
7708 
7709  def get_sigma(self):
7710  """get_sigma(NormalMover self) -> IMP::Float"""
7711  return _IMP_core.NormalMover_get_sigma(self)
7712 
7713 
7714  def get_version_info(self):
7715  """get_version_info(NormalMover self) -> VersionInfo"""
7716  return _IMP_core.NormalMover_get_version_info(self)
7717 
7718 
7719  def __str__(self):
7720  """__str__(NormalMover self) -> std::string"""
7721  return _IMP_core.NormalMover___str__(self)
7722 
7723 
7724  def __repr__(self):
7725  """__repr__(NormalMover self) -> std::string"""
7726  return _IMP_core.NormalMover___repr__(self)
7727 
7728 
7729  @staticmethod
7730  def get_from(o):
7731  return _object_cast_to_NormalMover(o)
7732 
7733 NormalMover_swigregister = _IMP_core.NormalMover_swigregister
7734 NormalMover_swigregister(NormalMover)
7735 
7736 class OpenCubicSpline(_OpenCubicSplineBase):
7737  """Proxy of C++ IMP::core::OpenCubicSpline class."""
7738 
7739  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
7740 
7741  def __init__(self, values, minrange, spacing, extend=False):
7742  """
7743  __init__(IMP::core::OpenCubicSpline self, IMP::Floats const & values, IMP::Float minrange, IMP::Float spacing, bool extend=False) -> OpenCubicSpline
7744  __init__(IMP::core::OpenCubicSpline self, IMP::Floats const & values, IMP::Float minrange, IMP::Float spacing) -> OpenCubicSpline
7745  """
7746  this = _IMP_core.new_OpenCubicSpline(values, minrange, spacing, extend)
7747  try:
7748  self.this.append(this)
7749  except __builtin__.Exception:
7750  self.this = this
7751 
7752  def __str__(self):
7753  """__str__(OpenCubicSpline self) -> std::string"""
7754  return _IMP_core.OpenCubicSpline___str__(self)
7755 
7756 
7757  def __repr__(self):
7758  """__repr__(OpenCubicSpline self) -> std::string"""
7759  return _IMP_core.OpenCubicSpline___repr__(self)
7760 
7761 
7762  @staticmethod
7763  def get_from(o):
7764  return _object_cast_to_OpenCubicSpline(o)
7765 
7766  __swig_destroy__ = _IMP_core.delete_OpenCubicSpline
7767  __del__ = lambda self: None
7768 OpenCubicSpline_swigregister = _IMP_core.OpenCubicSpline_swigregister
7769 OpenCubicSpline_swigregister(OpenCubicSpline)
7770 
7771 class QuadraticClosePairsFinder(ClosePairsFinder):
7772  """Proxy of C++ IMP::core::QuadraticClosePairsFinder class."""
7773 
7774  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
7775 
7776  def __init__(self):
7777  """__init__(IMP::core::QuadraticClosePairsFinder self) -> QuadraticClosePairsFinder"""
7778  this = _IMP_core.new_QuadraticClosePairsFinder()
7779  try:
7780  self.this.append(this)
7781  except __builtin__.Exception:
7782  self.this = this
7783 
7784  def get_are_close_and_filtered(self, *args):
7785  """
7786  get_are_close_and_filtered(QuadraticClosePairsFinder self, Particle a, Particle b) -> bool
7787  get_are_close_and_filtered(QuadraticClosePairsFinder self, Model m, ParticleIndex a, ParticleIndex b) -> bool
7788  """
7789  return _IMP_core.QuadraticClosePairsFinder_get_are_close_and_filtered(self, *args)
7790 
7791 
7792  def get_close_pairs(self, *args):
7793  """
7794  get_close_pairs(QuadraticClosePairsFinder self, IMP::algebra::BoundingBox3Ds const & bbs) -> IMP::IntPairs
7795  get_close_pairs(QuadraticClosePairsFinder self, IMP::algebra::BoundingBox3Ds const & bas, IMP::algebra::BoundingBox3Ds const & bbs) -> IMP::IntPairs
7796  get_close_pairs(QuadraticClosePairsFinder self, Model m, IMP::ParticleIndexes const & pc) -> IMP::ParticleIndexPairs
7797  get_close_pairs(QuadraticClosePairsFinder self, Model m, IMP::ParticleIndexes const & pca, IMP::ParticleIndexes const & pcb) -> IMP::ParticleIndexPairs
7798  """
7799  return _IMP_core.QuadraticClosePairsFinder_get_close_pairs(self, *args)
7800 
7801 
7802  def do_get_inputs(self, m, pis):
7803  """do_get_inputs(QuadraticClosePairsFinder self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
7804  return _IMP_core.QuadraticClosePairsFinder_do_get_inputs(self, m, pis)
7805 
7806 
7807  def get_version_info(self):
7808  """get_version_info(QuadraticClosePairsFinder self) -> VersionInfo"""
7809  return _IMP_core.QuadraticClosePairsFinder_get_version_info(self)
7810 
7811 
7812  def __str__(self):
7813  """__str__(QuadraticClosePairsFinder self) -> std::string"""
7814  return _IMP_core.QuadraticClosePairsFinder___str__(self)
7815 
7816 
7817  def __repr__(self):
7818  """__repr__(QuadraticClosePairsFinder self) -> std::string"""
7819  return _IMP_core.QuadraticClosePairsFinder___repr__(self)
7820 
7821 
7822  @staticmethod
7823  def get_from(o):
7824  return _object_cast_to_QuadraticClosePairsFinder(o)
7825 
7826 QuadraticClosePairsFinder_swigregister = _IMP_core.QuadraticClosePairsFinder_swigregister
7827 QuadraticClosePairsFinder_swigregister(QuadraticClosePairsFinder)
7828 
7829 class RefinedPairsPairScore(IMP.PairScore):
7830  """Proxy of C++ IMP::core::RefinedPairsPairScore class."""
7831 
7832  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
7833 
7834  def __init__(self, r, f):
7835  """__init__(IMP::core::RefinedPairsPairScore self, Refiner r, PairScore f) -> RefinedPairsPairScore"""
7836  this = _IMP_core.new_RefinedPairsPairScore(r, f)
7837  try:
7838  self.this.append(this)
7839  except __builtin__.Exception:
7840  self.this = this
7841 
7842  def do_get_inputs(self, m, pis):
7843  """do_get_inputs(RefinedPairsPairScore self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
7844  return _IMP_core.RefinedPairsPairScore_do_get_inputs(self, m, pis)
7845 
7846 
7847  def get_version_info(self):
7848  """get_version_info(RefinedPairsPairScore self) -> VersionInfo"""
7849  return _IMP_core.RefinedPairsPairScore_get_version_info(self)
7850 
7851 
7852  def __str__(self):
7853  """__str__(RefinedPairsPairScore self) -> std::string"""
7854  return _IMP_core.RefinedPairsPairScore___str__(self)
7855 
7856 
7857  def __repr__(self):
7858  """__repr__(RefinedPairsPairScore self) -> std::string"""
7859  return _IMP_core.RefinedPairsPairScore___repr__(self)
7860 
7861 
7862  @staticmethod
7863  def get_from(o):
7864  return _object_cast_to_RefinedPairsPairScore(o)
7865 
7866 RefinedPairsPairScore_swigregister = _IMP_core.RefinedPairsPairScore_swigregister
7867 RefinedPairsPairScore_swigregister(RefinedPairsPairScore)
7868 
7869 class RigidBody(XYZ):
7870  """Proxy of C++ IMP::core::RigidBody class."""
7871 
7872  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
7873 
7874  def get_rigid_members(self):
7875  """get_rigid_members(RigidBody self) -> IMP::core::RigidMembers"""
7876  return _IMP_core.RigidBody_get_rigid_members(self)
7877 
7878 
7879  def get_rotation_keys():
7880  """get_rotation_keys() -> IMP::FloatKeys"""
7881  return _IMP_core.RigidBody_get_rotation_keys()
7882 
7883  get_rotation_keys = staticmethod(get_rotation_keys)
7884 
7885  def get_member_particle_indexes(self):
7886  """get_member_particle_indexes(RigidBody self) -> IMP::ParticleIndexes const &"""
7887  return _IMP_core.RigidBody_get_member_particle_indexes(self)
7888 
7889 
7890  def get_body_member_particle_indexes(self):
7891  """get_body_member_particle_indexes(RigidBody self) -> IMP::ParticleIndexes const &"""
7892  return _IMP_core.RigidBody_get_body_member_particle_indexes(self)
7893 
7894 
7895  def get_member_indexes(self):
7896  """get_member_indexes(RigidBody self) -> IMP::ParticleIndexes"""
7897  return _IMP_core.RigidBody_get_member_indexes(self)
7898 
7899 
7900  def __init__(self, *args):
7901  """
7902  __init__(IMP::core::RigidBody self) -> RigidBody
7903  __init__(IMP::core::RigidBody self, Model m, ParticleIndex id) -> RigidBody
7904  __init__(IMP::core::RigidBody self, _ParticleAdaptor d) -> RigidBody
7905  """
7906  this = _IMP_core.new_RigidBody(*args)
7907  try:
7908  self.this.append(this)
7909  except __builtin__.Exception:
7910  self.this = this
7911 
7912  def show(self, *args):
7913  """
7914  show(RigidBody self, _ostream out)
7915  show(RigidBody self)
7916  """
7917  return _IMP_core.RigidBody_show(self, *args)
7918 
7919 
7920  def setup_particle(*args):
7921  """
7922  setup_particle(Model m, ParticleIndex pi, _ParticleIndexesAdaptor ps) -> RigidBody
7923  setup_particle(_ParticleAdaptor decorator, _ParticleIndexesAdaptor ps) -> RigidBody
7924  setup_particle(Model m, ParticleIndex pi, ReferenceFrame3D rf) -> RigidBody
7925  setup_particle(_ParticleAdaptor decorator, ReferenceFrame3D rf) -> RigidBody
7926  """
7927  return _IMP_core.RigidBody_setup_particle(*args)
7928 
7929  setup_particle = staticmethod(setup_particle)
7930 
7931  def teardown_particle(rb):
7932  """teardown_particle(RigidBody rb)"""
7933  return _IMP_core.RigidBody_teardown_particle(rb)
7934 
7935  teardown_particle = staticmethod(teardown_particle)
7936  __swig_destroy__ = _IMP_core.delete_RigidBody
7937  __del__ = lambda self: None
7938 
7939  def get_is_setup(*args):
7940  """
7941  get_is_setup(_ParticleAdaptor p) -> bool
7942  get_is_setup(Model m, ParticleIndex pi) -> bool
7943  """
7944  return _IMP_core.RigidBody_get_is_setup(*args)
7945 
7946  get_is_setup = staticmethod(get_is_setup)
7947 
7948  def get_coordinates(self):
7949  """get_coordinates(RigidBody self) -> Vector3D"""
7950  return _IMP_core.RigidBody_get_coordinates(self)
7951 
7952 
7953  def get_rotation(self):
7954  """get_rotation(RigidBody self) -> Rotation3D"""
7955  return _IMP_core.RigidBody_get_rotation(self)
7956 
7957 
7958  def get_reference_frame(self):
7959  """get_reference_frame(RigidBody self) -> ReferenceFrame3D"""
7960  return _IMP_core.RigidBody_get_reference_frame(self)
7961 
7962 
7963  def set_reference_frame(self, tr):
7964  """set_reference_frame(RigidBody self, ReferenceFrame3D tr)"""
7965  return _IMP_core.RigidBody_set_reference_frame(self, tr)
7966 
7967 
7968  def set_reference_frame_lazy(self, tr):
7969  """set_reference_frame_lazy(RigidBody self, ReferenceFrame3D tr)"""
7970  return _IMP_core.RigidBody_set_reference_frame_lazy(self, tr)
7971 
7972 
7973  def set_reference_frame_from_members(self, members):
7974  """set_reference_frame_from_members(RigidBody self, IMP::ParticleIndexes const & members)"""
7975  return _IMP_core.RigidBody_set_reference_frame_from_members(self, members)
7976 
7977 
7978  def pull_back_members_adjoints(self, da):
7979  """pull_back_members_adjoints(RigidBody self, DerivativeAccumulator da)"""
7980  return _IMP_core.RigidBody_pull_back_members_adjoints(self, da)
7981 
7982 
7983  def pull_back_member_adjoints(self, pi, da):
7984  """pull_back_member_adjoints(RigidBody self, ParticleIndex pi, DerivativeAccumulator da)"""
7985  return _IMP_core.RigidBody_pull_back_member_adjoints(self, pi, da)
7986 
7987 
7988  def pull_back_body_member_adjoints(self, pi, da):
7989  """pull_back_body_member_adjoints(RigidBody self, ParticleIndex pi, DerivativeAccumulator da)"""
7990  return _IMP_core.RigidBody_pull_back_body_member_adjoints(self, pi, da)
7991 
7992 
7993  def add_to_derivatives(self, *args):
7994  """
7995  add_to_derivatives(RigidBody self, Vector3D local_derivative, Vector3D local_location, DerivativeAccumulator da)
7996  add_to_derivatives(RigidBody self, Vector3D local_derivative, Vector3D global_derivative, Vector3D local_location, Rotation3D rot_local_to_global, DerivativeAccumulator da)
7997  """
7998  return _IMP_core.RigidBody_add_to_derivatives(self, *args)
7999 
8000 
8001  def add_to_rotational_derivatives(self, *args):
8002  """
8003  add_to_rotational_derivatives(RigidBody self, Vector4D other_qderiv, Rotation3D rot_other_to_local, Rotation3D rot_local_to_global, DerivativeAccumulator da)
8004  add_to_rotational_derivatives(RigidBody self, Vector4D qderiv, DerivativeAccumulator da)
8005  """
8006  return _IMP_core.RigidBody_add_to_rotational_derivatives(self, *args)
8007 
8008 
8009  def add_to_torque(self, torque_local, da):
8010  """add_to_torque(RigidBody self, Vector3D torque_local, DerivativeAccumulator da)"""
8011  return _IMP_core.RigidBody_add_to_torque(self, torque_local, da)
8012 
8013 
8014  def get_torque(self):
8015  """get_torque(RigidBody self) -> Vector3D"""
8016  return _IMP_core.RigidBody_get_torque(self)
8017 
8018 
8019  def get_coordinates_are_optimized(self):
8020  """get_coordinates_are_optimized(RigidBody self) -> bool"""
8021  return _IMP_core.RigidBody_get_coordinates_are_optimized(self)
8022 
8023 
8024  def set_coordinates_are_optimized(self, tf):
8025  """set_coordinates_are_optimized(RigidBody self, bool tf)"""
8026  return _IMP_core.RigidBody_set_coordinates_are_optimized(self, tf)
8027 
8028 
8029  def normalize_rotation(self):
8030  """normalize_rotation(RigidBody self)"""
8031  return _IMP_core.RigidBody_normalize_rotation(self)
8032 
8033 
8034  def update_members(self):
8035  """update_members(RigidBody self)"""
8036  return _IMP_core.RigidBody_update_members(self)
8037 
8038 
8039  def get_rotational_derivatives(self):
8040  """get_rotational_derivatives(RigidBody self) -> Vector4D"""
8041  return _IMP_core.RigidBody_get_rotational_derivatives(self)
8042 
8043 
8044  def get_number_of_members(self):
8045  """get_number_of_members(RigidBody self) -> unsigned int"""
8046  return _IMP_core.RigidBody_get_number_of_members(self)
8047 
8048 
8049  def get_member(self, i):
8050  """get_member(RigidBody self, unsigned int i) -> RigidBodyMember"""
8051  return _IMP_core.RigidBody_get_member(self, i)
8052 
8053 
8054  def add_member(self, p):
8055  """add_member(RigidBody self, _ParticleIndexAdaptor p)"""
8056  return _IMP_core.RigidBody_add_member(self, p)
8057 
8058 
8059  def add_non_rigid_member(self, p):
8060  """add_non_rigid_member(RigidBody self, _ParticleIndexAdaptor p)"""
8061  return _IMP_core.RigidBody_add_non_rigid_member(self, p)
8062 
8063 
8064  def set_is_rigid_member(self, pi, tf):
8065  """set_is_rigid_member(RigidBody self, ParticleIndex pi, bool tf)"""
8066  return _IMP_core.RigidBody_set_is_rigid_member(self, pi, tf)
8067 
8068 
8069  def add_attribute(self, *args):
8070  """
8071  add_attribute(RigidBody self, FloatKey k, IMP::Float v, bool opt)
8072  add_attribute(RigidBody self, FloatKey a0, IMP::Float a1)
8073  add_attribute(RigidBody self, IntKey a0, IMP::Int a1)
8074  add_attribute(RigidBody self, StringKey a0, IMP::String a1)
8075  add_attribute(RigidBody self, ParticleIndexKey a0, Particle a1)
8076  add_attribute(RigidBody self, ObjectKey a0, Object a1)
8077  """
8078  return _IMP_core.RigidBody_add_attribute(self, *args)
8079 
8080 
8081  def get_value(self, *args):
8082  """
8083  get_value(RigidBody self, FloatKey a0) -> IMP::Float
8084  get_value(RigidBody self, IntKey a0) -> IMP::Int
8085  get_value(RigidBody self, StringKey a0) -> IMP::String
8086  get_value(RigidBody self, ParticleIndexKey a0) -> Particle
8087  get_value(RigidBody self, ObjectKey a0) -> Object
8088  """
8089  return _IMP_core.RigidBody_get_value(self, *args)
8090 
8091 
8092  def set_value(self, *args):
8093  """
8094  set_value(RigidBody self, FloatKey a0, IMP::Float a1)
8095  set_value(RigidBody self, IntKey a0, IMP::Int a1)
8096  set_value(RigidBody self, StringKey a0, IMP::String a1)
8097  set_value(RigidBody self, ParticleIndexKey a0, Particle a1)
8098  set_value(RigidBody self, ObjectKey a0, Object a1)
8099  """
8100  return _IMP_core.RigidBody_set_value(self, *args)
8101 
8102 
8103  def remove_attribute(self, *args):
8104  """
8105  remove_attribute(RigidBody self, FloatKey a0)
8106  remove_attribute(RigidBody self, IntKey a0)
8107  remove_attribute(RigidBody self, StringKey a0)
8108  remove_attribute(RigidBody self, ParticleIndexKey a0)
8109  remove_attribute(RigidBody self, ObjectKey a0)
8110  """
8111  return _IMP_core.RigidBody_remove_attribute(self, *args)
8112 
8113 
8114  def has_attribute(self, *args):
8115  """
8116  has_attribute(RigidBody self, FloatKey a0) -> bool
8117  has_attribute(RigidBody self, IntKey a0) -> bool
8118  has_attribute(RigidBody self, StringKey a0) -> bool
8119  has_attribute(RigidBody self, ParticleIndexKey a0) -> bool
8120  has_attribute(RigidBody self, ObjectKey a0) -> bool
8121  """
8122  return _IMP_core.RigidBody_has_attribute(self, *args)
8123 
8124 
8125  def get_derivative(self, a0):
8126  """get_derivative(RigidBody self, FloatKey a0) -> double"""
8127  return _IMP_core.RigidBody_get_derivative(self, a0)
8128 
8129 
8130  def get_name(self):
8131  """get_name(RigidBody self) -> std::string"""
8132  return _IMP_core.RigidBody_get_name(self)
8133 
8134 
8135  def clear_caches(self):
8136  """clear_caches(RigidBody self)"""
8137  return _IMP_core.RigidBody_clear_caches(self)
8138 
8139 
8140  def set_name(self, a0):
8141  """set_name(RigidBody self, std::string a0)"""
8142  return _IMP_core.RigidBody_set_name(self, a0)
8143 
8144 
8145  def set_check_level(self, a0):
8146  """set_check_level(RigidBody self, IMP::CheckLevel a0)"""
8147  return _IMP_core.RigidBody_set_check_level(self, a0)
8148 
8149 
8150  def add_to_derivative(self, a0, a1, a2):
8151  """add_to_derivative(RigidBody self, FloatKey a0, double a1, DerivativeAccumulator a2)"""
8152  return _IMP_core.RigidBody_add_to_derivative(self, a0, a1, a2)
8153 
8154 
8155  def set_is_optimized(self, a0, a1):
8156  """set_is_optimized(RigidBody self, FloatKey a0, bool a1)"""
8157  return _IMP_core.RigidBody_set_is_optimized(self, a0, a1)
8158 
8159 
8160  def get_is_optimized(self, a0):
8161  """get_is_optimized(RigidBody self, FloatKey a0) -> bool"""
8162  return _IMP_core.RigidBody_get_is_optimized(self, a0)
8163 
8164 
8165  def get_check_level(self):
8166  """get_check_level(RigidBody self) -> IMP::CheckLevel"""
8167  return _IMP_core.RigidBody_get_check_level(self)
8168 
8169 
8170  def __eq__(self, *args):
8171  """
8172  __eq__(RigidBody self, RigidBody o) -> bool
8173  __eq__(RigidBody self, Particle d) -> bool
8174  """
8175  return _IMP_core.RigidBody___eq__(self, *args)
8176 
8177 
8178  def __ne__(self, *args):
8179  """
8180  __ne__(RigidBody self, RigidBody o) -> bool
8181  __ne__(RigidBody self, Particle d) -> bool
8182  """
8183  return _IMP_core.RigidBody___ne__(self, *args)
8184 
8185 
8186  def __le__(self, *args):
8187  """
8188  __le__(RigidBody self, RigidBody o) -> bool
8189  __le__(RigidBody self, Particle d) -> bool
8190  """
8191  return _IMP_core.RigidBody___le__(self, *args)
8192 
8193 
8194  def __lt__(self, *args):
8195  """
8196  __lt__(RigidBody self, RigidBody o) -> bool
8197  __lt__(RigidBody self, Particle d) -> bool
8198  """
8199  return _IMP_core.RigidBody___lt__(self, *args)
8200 
8201 
8202  def __ge__(self, *args):
8203  """
8204  __ge__(RigidBody self, RigidBody o) -> bool
8205  __ge__(RigidBody self, Particle d) -> bool
8206  """
8207  return _IMP_core.RigidBody___ge__(self, *args)
8208 
8209 
8210  def __gt__(self, *args):
8211  """
8212  __gt__(RigidBody self, RigidBody o) -> bool
8213  __gt__(RigidBody self, Particle d) -> bool
8214  """
8215  return _IMP_core.RigidBody___gt__(self, *args)
8216 
8217 
8218  def __hash__(self):
8219  """__hash__(RigidBody self) -> std::size_t"""
8220  return _IMP_core.RigidBody___hash__(self)
8221 
8222 
8223  def __str__(self):
8224  """__str__(RigidBody self) -> std::string"""
8225  return _IMP_core.RigidBody___str__(self)
8226 
8227 
8228  def __repr__(self):
8229  """__repr__(RigidBody self) -> std::string"""
8230  return _IMP_core.RigidBody___repr__(self)
8231 
8232 RigidBody_swigregister = _IMP_core.RigidBody_swigregister
8233 RigidBody_swigregister(RigidBody)
8234 
8235 def RigidBody_get_rotation_keys():
8236  """RigidBody_get_rotation_keys() -> IMP::FloatKeys"""
8237  return _IMP_core.RigidBody_get_rotation_keys()
8238 
8239 def RigidBody_setup_particle(*args):
8240  """
8241  setup_particle(Model m, ParticleIndex pi, _ParticleIndexesAdaptor ps) -> RigidBody
8242  setup_particle(_ParticleAdaptor decorator, _ParticleIndexesAdaptor ps) -> RigidBody
8243  setup_particle(Model m, ParticleIndex pi, ReferenceFrame3D rf) -> RigidBody
8244  RigidBody_setup_particle(_ParticleAdaptor decorator, ReferenceFrame3D rf) -> RigidBody
8245  """
8246  return _IMP_core.RigidBody_setup_particle(*args)
8247 
8248 def RigidBody_teardown_particle(rb):
8249  """RigidBody_teardown_particle(RigidBody rb)"""
8250  return _IMP_core.RigidBody_teardown_particle(rb)
8251 
8252 def RigidBody_get_is_setup(*args):
8253  """
8254  get_is_setup(_ParticleAdaptor p) -> bool
8255  RigidBody_get_is_setup(Model m, ParticleIndex pi) -> bool
8256  """
8257  return _IMP_core.RigidBody_get_is_setup(*args)
8258 
8259 
8261  """add_rigid_body_cache_key(ObjectKey k)"""
8262  return _IMP_core.add_rigid_body_cache_key(k)
8263 class RigidBodyMember(XYZ):
8264  """Proxy of C++ IMP::core::RigidBodyMember class."""
8265 
8266  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
8267 
8268  def __init__(self, *args):
8269  """
8270  __init__(IMP::core::RigidBodyMember self) -> RigidBodyMember
8271  __init__(IMP::core::RigidBodyMember self, Model m, ParticleIndex id) -> RigidBodyMember
8272  __init__(IMP::core::RigidBodyMember self, _ParticleAdaptor d) -> RigidBodyMember
8273  """
8274  this = _IMP_core.new_RigidBodyMember(*args)
8275  try:
8276  self.this.append(this)
8277  except __builtin__.Exception:
8278  self.this = this
8279 
8280  def show(self, *args):
8281  """
8282  show(RigidBodyMember self, _ostream out)
8283  show(RigidBodyMember self)
8284  """
8285  return _IMP_core.RigidBodyMember_show(self, *args)
8286 
8287 
8288  def get_rigid_body(self):
8289  """get_rigid_body(RigidBodyMember self) -> RigidBody"""
8290  return _IMP_core.RigidBodyMember_get_rigid_body(self)
8291 
8292 
8293  def get_internal_coordinates(self):
8294  """get_internal_coordinates(RigidBodyMember self) -> Vector3D"""
8295  return _IMP_core.RigidBodyMember_get_internal_coordinates(self)
8296 
8297 
8298  def set_internal_coordinates(self, v):
8299  """set_internal_coordinates(RigidBodyMember self, Vector3D v)"""
8300  return _IMP_core.RigidBodyMember_set_internal_coordinates(self, v)
8301 
8302 
8303  def set_internal_transformation(self, v):
8304  """set_internal_transformation(RigidBodyMember self, Transformation3D v)"""
8305  return _IMP_core.RigidBodyMember_set_internal_transformation(self, v)
8306 
8307 
8308  def get_internal_transformation(self):
8309  """get_internal_transformation(RigidBodyMember self) -> Transformation3D"""
8310  return _IMP_core.RigidBodyMember_get_internal_transformation(self)
8311 
8312  __swig_destroy__ = _IMP_core.delete_RigidBodyMember
8313  __del__ = lambda self: None
8314 
8315  def set_coordinates(self, *args):
8316  """
8317  set_coordinates(RigidBodyMember self, Vector3D center)
8318  set_coordinates(RigidBodyMember self, Transformation3D tr)
8319  """
8320  return _IMP_core.RigidBodyMember_set_coordinates(self, *args)
8321 
8322 
8323  def get_is_setup(*args):
8324  """
8325  get_is_setup(_ParticleAdaptor p) -> bool
8326  get_is_setup(Model m, _ParticleIndexAdaptor p) -> bool
8327  """
8328  return _IMP_core.RigidBodyMember_get_is_setup(*args)
8329 
8330  get_is_setup = staticmethod(get_is_setup)
8331 
8332  def get_internal_coordinate_keys():
8333  """get_internal_coordinate_keys() -> IMP::FloatKeys"""
8334  return _IMP_core.RigidBodyMember_get_internal_coordinate_keys()
8335 
8336  get_internal_coordinate_keys = staticmethod(get_internal_coordinate_keys)
8337 
8338  def get_internal_rotation_keys():
8339  """get_internal_rotation_keys() -> IMP::FloatKeys"""
8340  return _IMP_core.RigidBodyMember_get_internal_rotation_keys()
8341 
8342  get_internal_rotation_keys = staticmethod(get_internal_rotation_keys)
8343 
8344  def add_attribute(self, *args):
8345  """
8346  add_attribute(RigidBodyMember self, FloatKey k, IMP::Float v, bool opt)
8347  add_attribute(RigidBodyMember self, FloatKey a0, IMP::Float a1)
8348  add_attribute(RigidBodyMember self, IntKey a0, IMP::Int a1)
8349  add_attribute(RigidBodyMember self, StringKey a0, IMP::String a1)
8350  add_attribute(RigidBodyMember self, ParticleIndexKey a0, Particle a1)
8351  add_attribute(RigidBodyMember self, ObjectKey a0, Object a1)
8352  """
8353  return _IMP_core.RigidBodyMember_add_attribute(self, *args)
8354 
8355 
8356  def get_value(self, *args):
8357  """
8358  get_value(RigidBodyMember self, FloatKey a0) -> IMP::Float
8359  get_value(RigidBodyMember self, IntKey a0) -> IMP::Int
8360  get_value(RigidBodyMember self, StringKey a0) -> IMP::String
8361  get_value(RigidBodyMember self, ParticleIndexKey a0) -> Particle
8362  get_value(RigidBodyMember self, ObjectKey a0) -> Object
8363  """
8364  return _IMP_core.RigidBodyMember_get_value(self, *args)
8365 
8366 
8367  def set_value(self, *args):
8368  """
8369  set_value(RigidBodyMember self, FloatKey a0, IMP::Float a1)
8370  set_value(RigidBodyMember self, IntKey a0, IMP::Int a1)
8371  set_value(RigidBodyMember self, StringKey a0, IMP::String a1)
8372  set_value(RigidBodyMember self, ParticleIndexKey a0, Particle a1)
8373  set_value(RigidBodyMember self, ObjectKey a0, Object a1)
8374  """
8375  return _IMP_core.RigidBodyMember_set_value(self, *args)
8376 
8377 
8378  def remove_attribute(self, *args):
8379  """
8380  remove_attribute(RigidBodyMember self, FloatKey a0)
8381  remove_attribute(RigidBodyMember self, IntKey a0)
8382  remove_attribute(RigidBodyMember self, StringKey a0)
8383  remove_attribute(RigidBodyMember self, ParticleIndexKey a0)
8384  remove_attribute(RigidBodyMember self, ObjectKey a0)
8385  """
8386  return _IMP_core.RigidBodyMember_remove_attribute(self, *args)
8387 
8388 
8389  def has_attribute(self, *args):
8390  """
8391  has_attribute(RigidBodyMember self, FloatKey a0) -> bool
8392  has_attribute(RigidBodyMember self, IntKey a0) -> bool
8393  has_attribute(RigidBodyMember self, StringKey a0) -> bool
8394  has_attribute(RigidBodyMember self, ParticleIndexKey a0) -> bool
8395  has_attribute(RigidBodyMember self, ObjectKey a0) -> bool
8396  """
8397  return _IMP_core.RigidBodyMember_has_attribute(self, *args)
8398 
8399 
8400  def get_derivative(self, a0):
8401  """get_derivative(RigidBodyMember self, FloatKey a0) -> double"""
8402  return _IMP_core.RigidBodyMember_get_derivative(self, a0)
8403 
8404 
8405  def get_name(self):
8406  """get_name(RigidBodyMember self) -> std::string"""
8407  return _IMP_core.RigidBodyMember_get_name(self)
8408 
8409 
8410  def clear_caches(self):
8411  """clear_caches(RigidBodyMember self)"""
8412  return _IMP_core.RigidBodyMember_clear_caches(self)
8413 
8414 
8415  def set_name(self, a0):
8416  """set_name(RigidBodyMember self, std::string a0)"""
8417  return _IMP_core.RigidBodyMember_set_name(self, a0)
8418 
8419 
8420  def set_check_level(self, a0):
8421  """set_check_level(RigidBodyMember self, IMP::CheckLevel a0)"""
8422  return _IMP_core.RigidBodyMember_set_check_level(self, a0)
8423 
8424 
8425  def add_to_derivative(self, a0, a1, a2):
8426  """add_to_derivative(RigidBodyMember self, FloatKey a0, double a1, DerivativeAccumulator a2)"""
8427  return _IMP_core.RigidBodyMember_add_to_derivative(self, a0, a1, a2)
8428 
8429 
8430  def set_is_optimized(self, a0, a1):
8431  """set_is_optimized(RigidBodyMember self, FloatKey a0, bool a1)"""
8432  return _IMP_core.RigidBodyMember_set_is_optimized(self, a0, a1)
8433 
8434 
8435  def get_is_optimized(self, a0):
8436  """get_is_optimized(RigidBodyMember self, FloatKey a0) -> bool"""
8437  return _IMP_core.RigidBodyMember_get_is_optimized(self, a0)
8438 
8439 
8440  def get_check_level(self):
8441  """get_check_level(RigidBodyMember self) -> IMP::CheckLevel"""
8442  return _IMP_core.RigidBodyMember_get_check_level(self)
8443 
8444 
8445  def __eq__(self, *args):
8446  """
8447  __eq__(RigidBodyMember self, RigidBodyMember o) -> bool
8448  __eq__(RigidBodyMember self, Particle d) -> bool
8449  """
8450  return _IMP_core.RigidBodyMember___eq__(self, *args)
8451 
8452 
8453  def __ne__(self, *args):
8454  """
8455  __ne__(RigidBodyMember self, RigidBodyMember o) -> bool
8456  __ne__(RigidBodyMember self, Particle d) -> bool
8457  """
8458  return _IMP_core.RigidBodyMember___ne__(self, *args)
8459 
8460 
8461  def __le__(self, *args):
8462  """
8463  __le__(RigidBodyMember self, RigidBodyMember o) -> bool
8464  __le__(RigidBodyMember self, Particle d) -> bool
8465  """
8466  return _IMP_core.RigidBodyMember___le__(self, *args)
8467 
8468 
8469  def __lt__(self, *args):
8470  """
8471  __lt__(RigidBodyMember self, RigidBodyMember o) -> bool
8472  __lt__(RigidBodyMember self, Particle d) -> bool
8473  """
8474  return _IMP_core.RigidBodyMember___lt__(self, *args)
8475 
8476 
8477  def __ge__(self, *args):
8478  """
8479  __ge__(RigidBodyMember self, RigidBodyMember o) -> bool
8480  __ge__(RigidBodyMember self, Particle d) -> bool
8481  """
8482  return _IMP_core.RigidBodyMember___ge__(self, *args)
8483 
8484 
8485  def __gt__(self, *args):
8486  """
8487  __gt__(RigidBodyMember self, RigidBodyMember o) -> bool
8488  __gt__(RigidBodyMember self, Particle d) -> bool
8489  """
8490  return _IMP_core.RigidBodyMember___gt__(self, *args)
8491 
8492 
8493  def __hash__(self):
8494  """__hash__(RigidBodyMember self) -> std::size_t"""
8495  return _IMP_core.RigidBodyMember___hash__(self)
8496 
8497 
8498  def __str__(self):
8499  """__str__(RigidBodyMember self) -> std::string"""
8500  return _IMP_core.RigidBodyMember___str__(self)
8501 
8502 
8503  def __repr__(self):
8504  """__repr__(RigidBodyMember self) -> std::string"""
8505  return _IMP_core.RigidBodyMember___repr__(self)
8506 
8507 RigidBodyMember_swigregister = _IMP_core.RigidBodyMember_swigregister
8508 RigidBodyMember_swigregister(RigidBodyMember)
8509 
8510 def RigidBodyMember_get_is_setup(*args):
8511  """
8512  get_is_setup(_ParticleAdaptor p) -> bool
8513  RigidBodyMember_get_is_setup(Model m, _ParticleIndexAdaptor p) -> bool
8514  """
8515  return _IMP_core.RigidBodyMember_get_is_setup(*args)
8516 
8517 def RigidBodyMember_get_internal_coordinate_keys():
8518  """RigidBodyMember_get_internal_coordinate_keys() -> IMP::FloatKeys"""
8519  return _IMP_core.RigidBodyMember_get_internal_coordinate_keys()
8520 
8521 def RigidBodyMember_get_internal_rotation_keys():
8522  """RigidBodyMember_get_internal_rotation_keys() -> IMP::FloatKeys"""
8523  return _IMP_core.RigidBodyMember_get_internal_rotation_keys()
8524 
8525 class RigidMember(RigidBodyMember):
8526  """Proxy of C++ IMP::core::RigidMember class."""
8527 
8528  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
8529 
8530  def __init__(self, *args):
8531  """
8532  __init__(IMP::core::RigidMember self) -> RigidMember
8533  __init__(IMP::core::RigidMember self, Model m, ParticleIndex id) -> RigidMember
8534  __init__(IMP::core::RigidMember self, _ParticleAdaptor d) -> RigidMember
8535  """
8536  this = _IMP_core.new_RigidMember(*args)
8537  try:
8538  self.this.append(this)
8539  except __builtin__.Exception:
8540  self.this = this
8541 
8542  def show(self, *args):
8543  """
8544  show(RigidMember self, _ostream out)
8545  show(RigidMember self)
8546  """
8547  return _IMP_core.RigidMember_show(self, *args)
8548 
8549  __swig_destroy__ = _IMP_core.delete_RigidMember
8550  __del__ = lambda self: None
8551 
8552  def get_is_setup(*args):
8553  """
8554  get_is_setup(_ParticleAdaptor p) -> bool
8555  get_is_setup(Model m, _ParticleIndexAdaptor p) -> bool
8556  """
8557  return _IMP_core.RigidMember_get_is_setup(*args)
8558 
8559  get_is_setup = staticmethod(get_is_setup)
8560 
8561  def add_attribute(self, *args):
8562  """
8563  add_attribute(RigidMember self, FloatKey k, IMP::Float v, bool opt)
8564  add_attribute(RigidMember self, FloatKey a0, IMP::Float a1)
8565  add_attribute(RigidMember self, IntKey a0, IMP::Int a1)
8566  add_attribute(RigidMember self, StringKey a0, IMP::String a1)
8567  add_attribute(RigidMember self, ParticleIndexKey a0, Particle a1)
8568  add_attribute(RigidMember self, ObjectKey a0, Object a1)
8569  """
8570  return _IMP_core.RigidMember_add_attribute(self, *args)
8571 
8572 
8573  def get_value(self, *args):
8574  """
8575  get_value(RigidMember self, FloatKey a0) -> IMP::Float
8576  get_value(RigidMember self, IntKey a0) -> IMP::Int
8577  get_value(RigidMember self, StringKey a0) -> IMP::String
8578  get_value(RigidMember self, ParticleIndexKey a0) -> Particle
8579  get_value(RigidMember self, ObjectKey a0) -> Object
8580  """
8581  return _IMP_core.RigidMember_get_value(self, *args)
8582 
8583 
8584  def set_value(self, *args):
8585  """
8586  set_value(RigidMember self, FloatKey a0, IMP::Float a1)
8587  set_value(RigidMember self, IntKey a0, IMP::Int a1)
8588  set_value(RigidMember self, StringKey a0, IMP::String a1)
8589  set_value(RigidMember self, ParticleIndexKey a0, Particle a1)
8590  set_value(RigidMember self, ObjectKey a0, Object a1)
8591  """
8592  return _IMP_core.RigidMember_set_value(self, *args)
8593 
8594 
8595  def remove_attribute(self, *args):
8596  """
8597  remove_attribute(RigidMember self, FloatKey a0)
8598  remove_attribute(RigidMember self, IntKey a0)
8599  remove_attribute(RigidMember self, StringKey a0)
8600  remove_attribute(RigidMember self, ParticleIndexKey a0)
8601  remove_attribute(RigidMember self, ObjectKey a0)
8602  """
8603  return _IMP_core.RigidMember_remove_attribute(self, *args)
8604 
8605 
8606  def has_attribute(self, *args):
8607  """
8608  has_attribute(RigidMember self, FloatKey a0) -> bool
8609  has_attribute(RigidMember self, IntKey a0) -> bool
8610  has_attribute(RigidMember self, StringKey a0) -> bool
8611  has_attribute(RigidMember self, ParticleIndexKey a0) -> bool
8612  has_attribute(RigidMember self, ObjectKey a0) -> bool
8613  """
8614  return _IMP_core.RigidMember_has_attribute(self, *args)
8615 
8616 
8617  def get_derivative(self, a0):
8618  """get_derivative(RigidMember self, FloatKey a0) -> double"""
8619  return _IMP_core.RigidMember_get_derivative(self, a0)
8620 
8621 
8622  def get_name(self):
8623  """get_name(RigidMember self) -> std::string"""
8624  return _IMP_core.RigidMember_get_name(self)
8625 
8626 
8627  def clear_caches(self):
8628  """clear_caches(RigidMember self)"""
8629  return _IMP_core.RigidMember_clear_caches(self)
8630 
8631 
8632  def set_name(self, a0):
8633  """set_name(RigidMember self, std::string a0)"""
8634  return _IMP_core.RigidMember_set_name(self, a0)
8635 
8636 
8637  def set_check_level(self, a0):
8638  """set_check_level(RigidMember self, IMP::CheckLevel a0)"""
8639  return _IMP_core.RigidMember_set_check_level(self, a0)
8640 
8641 
8642  def add_to_derivative(self, a0, a1, a2):
8643  """add_to_derivative(RigidMember self, FloatKey a0, double a1, DerivativeAccumulator a2)"""
8644  return _IMP_core.RigidMember_add_to_derivative(self, a0, a1, a2)
8645 
8646 
8647  def set_is_optimized(self, a0, a1):
8648  """set_is_optimized(RigidMember self, FloatKey a0, bool a1)"""
8649  return _IMP_core.RigidMember_set_is_optimized(self, a0, a1)
8650 
8651 
8652  def get_is_optimized(self, a0):
8653  """get_is_optimized(RigidMember self, FloatKey a0) -> bool"""
8654  return _IMP_core.RigidMember_get_is_optimized(self, a0)
8655 
8656 
8657  def get_check_level(self):
8658  """get_check_level(RigidMember self) -> IMP::CheckLevel"""
8659  return _IMP_core.RigidMember_get_check_level(self)
8660 
8661 
8662  def __eq__(self, *args):
8663  """
8664  __eq__(RigidMember self, RigidMember o) -> bool
8665  __eq__(RigidMember self, Particle d) -> bool
8666  """
8667  return _IMP_core.RigidMember___eq__(self, *args)
8668 
8669 
8670  def __ne__(self, *args):
8671  """
8672  __ne__(RigidMember self, RigidMember o) -> bool
8673  __ne__(RigidMember self, Particle d) -> bool
8674  """
8675  return _IMP_core.RigidMember___ne__(self, *args)
8676 
8677 
8678  def __le__(self, *args):
8679  """
8680  __le__(RigidMember self, RigidMember o) -> bool
8681  __le__(RigidMember self, Particle d) -> bool
8682  """
8683  return _IMP_core.RigidMember___le__(self, *args)
8684 
8685 
8686  def __lt__(self, *args):
8687  """
8688  __lt__(RigidMember self, RigidMember o) -> bool
8689  __lt__(RigidMember self, Particle d) -> bool
8690  """
8691  return _IMP_core.RigidMember___lt__(self, *args)
8692 
8693 
8694  def __ge__(self, *args):
8695  """
8696  __ge__(RigidMember self, RigidMember o) -> bool
8697  __ge__(RigidMember self, Particle d) -> bool
8698  """
8699  return _IMP_core.RigidMember___ge__(self, *args)
8700 
8701 
8702  def __gt__(self, *args):
8703  """
8704  __gt__(RigidMember self, RigidMember o) -> bool
8705  __gt__(RigidMember self, Particle d) -> bool
8706  """
8707  return _IMP_core.RigidMember___gt__(self, *args)
8708 
8709 
8710  def __hash__(self):
8711  """__hash__(RigidMember self) -> std::size_t"""
8712  return _IMP_core.RigidMember___hash__(self)
8713 
8714 
8715  def __str__(self):
8716  """__str__(RigidMember self) -> std::string"""
8717  return _IMP_core.RigidMember___str__(self)
8718 
8719 
8720  def __repr__(self):
8721  """__repr__(RigidMember self) -> std::string"""
8722  return _IMP_core.RigidMember___repr__(self)
8723 
8724 RigidMember_swigregister = _IMP_core.RigidMember_swigregister
8725 RigidMember_swigregister(RigidMember)
8726 
8727 def RigidMember_get_is_setup(*args):
8728  """
8729  get_is_setup(_ParticleAdaptor p) -> bool
8730  RigidMember_get_is_setup(Model m, _ParticleIndexAdaptor p) -> bool
8731  """
8732  return _IMP_core.RigidMember_get_is_setup(*args)
8733 
8734 class NonRigidMember(RigidBodyMember):
8735  """Proxy of C++ IMP::core::NonRigidMember class."""
8736 
8737  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
8738 
8739  def __init__(self, *args):
8740  """
8741  __init__(IMP::core::NonRigidMember self) -> NonRigidMember
8742  __init__(IMP::core::NonRigidMember self, Model m, ParticleIndex id) -> NonRigidMember
8743  __init__(IMP::core::NonRigidMember self, _ParticleAdaptor d) -> NonRigidMember
8744  """
8745  this = _IMP_core.new_NonRigidMember(*args)
8746  try:
8747  self.this.append(this)
8748  except __builtin__.Exception:
8749  self.this = this
8750 
8751  def show(self, *args):
8752  """
8753  show(NonRigidMember self, _ostream out)
8754  show(NonRigidMember self)
8755  """
8756  return _IMP_core.NonRigidMember_show(self, *args)
8757 
8758  __swig_destroy__ = _IMP_core.delete_NonRigidMember
8759  __del__ = lambda self: None
8760 
8761  def get_is_setup(*args):
8762  """
8763  get_is_setup(_ParticleAdaptor p) -> bool
8764  get_is_setup(Model m, ParticleIndex p) -> bool
8765  """
8766  return _IMP_core.NonRigidMember_get_is_setup(*args)
8767 
8768  get_is_setup = staticmethod(get_is_setup)
8769 
8770  def add_to_internal_derivatives(self, deriv_parent, da):
8771  """add_to_internal_derivatives(NonRigidMember self, Vector3D deriv_parent, DerivativeAccumulator da)"""
8772  return _IMP_core.NonRigidMember_add_to_internal_derivatives(self, deriv_parent, da)
8773 
8774 
8775  def add_to_internal_rotational_derivatives(self, *args):
8776  """
8777  add_to_internal_rotational_derivatives(NonRigidMember self, Vector4D local_qderiv, Rotation3D rot_local_to_parent, Rotation3D rot_parent_to_global, DerivativeAccumulator da)
8778  add_to_internal_rotational_derivatives(NonRigidMember self, Vector4D qderiv, DerivativeAccumulator da)
8779  """
8780  return _IMP_core.NonRigidMember_add_to_internal_rotational_derivatives(self, *args)
8781 
8782 
8783  def get_internal_derivatives(self):
8784  """get_internal_derivatives(NonRigidMember self) -> Vector3D"""
8785  return _IMP_core.NonRigidMember_get_internal_derivatives(self)
8786 
8787 
8788  def get_internal_rotational_derivatives(self):
8789  """get_internal_rotational_derivatives(NonRigidMember self) -> Vector4D"""
8790  return _IMP_core.NonRigidMember_get_internal_rotational_derivatives(self)
8791 
8792 
8793  def add_attribute(self, *args):
8794  """
8795  add_attribute(NonRigidMember self, FloatKey k, IMP::Float v, bool opt)
8796  add_attribute(NonRigidMember self, FloatKey a0, IMP::Float a1)
8797  add_attribute(NonRigidMember self, IntKey a0, IMP::Int a1)
8798  add_attribute(NonRigidMember self, StringKey a0, IMP::String a1)
8799  add_attribute(NonRigidMember self, ParticleIndexKey a0, Particle a1)
8800  add_attribute(NonRigidMember self, ObjectKey a0, Object a1)
8801  """
8802  return _IMP_core.NonRigidMember_add_attribute(self, *args)
8803 
8804 
8805  def get_value(self, *args):
8806  """
8807  get_value(NonRigidMember self, FloatKey a0) -> IMP::Float
8808  get_value(NonRigidMember self, IntKey a0) -> IMP::Int
8809  get_value(NonRigidMember self, StringKey a0) -> IMP::String
8810  get_value(NonRigidMember self, ParticleIndexKey a0) -> Particle
8811  get_value(NonRigidMember self, ObjectKey a0) -> Object
8812  """
8813  return _IMP_core.NonRigidMember_get_value(self, *args)
8814 
8815 
8816  def set_value(self, *args):
8817  """
8818  set_value(NonRigidMember self, FloatKey a0, IMP::Float a1)
8819  set_value(NonRigidMember self, IntKey a0, IMP::Int a1)
8820  set_value(NonRigidMember self, StringKey a0, IMP::String a1)
8821  set_value(NonRigidMember self, ParticleIndexKey a0, Particle a1)
8822  set_value(NonRigidMember self, ObjectKey a0, Object a1)
8823  """
8824  return _IMP_core.NonRigidMember_set_value(self, *args)
8825 
8826 
8827  def remove_attribute(self, *args):
8828  """
8829  remove_attribute(NonRigidMember self, FloatKey a0)
8830  remove_attribute(NonRigidMember self, IntKey a0)
8831  remove_attribute(NonRigidMember self, StringKey a0)
8832  remove_attribute(NonRigidMember self, ParticleIndexKey a0)
8833  remove_attribute(NonRigidMember self, ObjectKey a0)
8834  """
8835  return _IMP_core.NonRigidMember_remove_attribute(self, *args)
8836 
8837 
8838  def has_attribute(self, *args):
8839  """
8840  has_attribute(NonRigidMember self, FloatKey a0) -> bool
8841  has_attribute(NonRigidMember self, IntKey a0) -> bool
8842  has_attribute(NonRigidMember self, StringKey a0) -> bool
8843  has_attribute(NonRigidMember self, ParticleIndexKey a0) -> bool
8844  has_attribute(NonRigidMember self, ObjectKey a0) -> bool
8845  """
8846  return _IMP_core.NonRigidMember_has_attribute(self, *args)
8847 
8848 
8849  def get_derivative(self, a0):
8850  """get_derivative(NonRigidMember self, FloatKey a0) -> double"""
8851  return _IMP_core.NonRigidMember_get_derivative(self, a0)
8852 
8853 
8854  def get_name(self):
8855  """get_name(NonRigidMember self) -> std::string"""
8856  return _IMP_core.NonRigidMember_get_name(self)
8857 
8858 
8859  def clear_caches(self):
8860  """clear_caches(NonRigidMember self)"""
8861  return _IMP_core.NonRigidMember_clear_caches(self)
8862 
8863 
8864  def set_name(self, a0):
8865  """set_name(NonRigidMember self, std::string a0)"""
8866  return _IMP_core.NonRigidMember_set_name(self, a0)
8867 
8868 
8869  def set_check_level(self, a0):
8870  """set_check_level(NonRigidMember self, IMP::CheckLevel a0)"""
8871  return _IMP_core.NonRigidMember_set_check_level(self, a0)
8872 
8873 
8874  def add_to_derivative(self, a0, a1, a2):
8875  """add_to_derivative(NonRigidMember self, FloatKey a0, double a1, DerivativeAccumulator a2)"""
8876  return _IMP_core.NonRigidMember_add_to_derivative(self, a0, a1, a2)
8877 
8878 
8879  def set_is_optimized(self, a0, a1):
8880  """set_is_optimized(NonRigidMember self, FloatKey a0, bool a1)"""
8881  return _IMP_core.NonRigidMember_set_is_optimized(self, a0, a1)
8882 
8883 
8884  def get_is_optimized(self, a0):
8885  """get_is_optimized(NonRigidMember self, FloatKey a0) -> bool"""
8886  return _IMP_core.NonRigidMember_get_is_optimized(self, a0)
8887 
8888 
8889  def get_check_level(self):
8890  """get_check_level(NonRigidMember self) -> IMP::CheckLevel"""
8891  return _IMP_core.NonRigidMember_get_check_level(self)
8892 
8893 
8894  def __eq__(self, *args):
8895  """
8896  __eq__(NonRigidMember self, NonRigidMember o) -> bool
8897  __eq__(NonRigidMember self, Particle d) -> bool
8898  """
8899  return _IMP_core.NonRigidMember___eq__(self, *args)
8900 
8901 
8902  def __ne__(self, *args):
8903  """
8904  __ne__(NonRigidMember self, NonRigidMember o) -> bool
8905  __ne__(NonRigidMember self, Particle d) -> bool
8906  """
8907  return _IMP_core.NonRigidMember___ne__(self, *args)
8908 
8909 
8910  def __le__(self, *args):
8911  """
8912  __le__(NonRigidMember self, NonRigidMember o) -> bool
8913  __le__(NonRigidMember self, Particle d) -> bool
8914  """
8915  return _IMP_core.NonRigidMember___le__(self, *args)
8916 
8917 
8918  def __lt__(self, *args):
8919  """
8920  __lt__(NonRigidMember self, NonRigidMember o) -> bool
8921  __lt__(NonRigidMember self, Particle d) -> bool
8922  """
8923  return _IMP_core.NonRigidMember___lt__(self, *args)
8924 
8925 
8926  def __ge__(self, *args):
8927  """
8928  __ge__(NonRigidMember self, NonRigidMember o) -> bool
8929  __ge__(NonRigidMember self, Particle d) -> bool
8930  """
8931  return _IMP_core.NonRigidMember___ge__(self, *args)
8932 
8933 
8934  def __gt__(self, *args):
8935  """
8936  __gt__(NonRigidMember self, NonRigidMember o) -> bool
8937  __gt__(NonRigidMember self, Particle d) -> bool
8938  """
8939  return _IMP_core.NonRigidMember___gt__(self, *args)
8940 
8941 
8942  def __hash__(self):
8943  """__hash__(NonRigidMember self) -> std::size_t"""
8944  return _IMP_core.NonRigidMember___hash__(self)
8945 
8946 
8947  def __str__(self):
8948  """__str__(NonRigidMember self) -> std::string"""
8949  return _IMP_core.NonRigidMember___str__(self)
8950 
8951 
8952  def __repr__(self):
8953  """__repr__(NonRigidMember self) -> std::string"""
8954  return _IMP_core.NonRigidMember___repr__(self)
8955 
8956 NonRigidMember_swigregister = _IMP_core.NonRigidMember_swigregister
8957 NonRigidMember_swigregister(NonRigidMember)
8958 
8959 def NonRigidMember_get_is_setup(*args):
8960  """
8961  get_is_setup(_ParticleAdaptor p) -> bool
8962  NonRigidMember_get_is_setup(Model m, ParticleIndex p) -> bool
8963  """
8964  return _IMP_core.NonRigidMember_get_is_setup(*args)
8965 
8966 class RigidMembersRefiner(IMP.Refiner):
8967  """Proxy of C++ IMP::core::RigidMembersRefiner class."""
8968 
8969  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
8970 
8971  def __init__(self, *args):
8972  """
8973  __init__(IMP::core::RigidMembersRefiner self, std::string name) -> RigidMembersRefiner
8974  __init__(IMP::core::RigidMembersRefiner self) -> RigidMembersRefiner
8975  """
8976  this = _IMP_core.new_RigidMembersRefiner(*args)
8977  try:
8978  self.this.append(this)
8979  except __builtin__.Exception:
8980  self.this = this
8981 
8982  def do_get_inputs(self, m, pis):
8983  """do_get_inputs(RigidMembersRefiner self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
8984  return _IMP_core.RigidMembersRefiner_do_get_inputs(self, m, pis)
8985 
8986 
8987  def get_version_info(self):
8988  """get_version_info(RigidMembersRefiner self) -> VersionInfo"""
8989  return _IMP_core.RigidMembersRefiner_get_version_info(self)
8990 
8991 
8992  def __str__(self):
8993  """__str__(RigidMembersRefiner self) -> std::string"""
8994  return _IMP_core.RigidMembersRefiner___str__(self)
8995 
8996 
8997  def __repr__(self):
8998  """__repr__(RigidMembersRefiner self) -> std::string"""
8999  return _IMP_core.RigidMembersRefiner___repr__(self)
9000 
9001 
9002  @staticmethod
9003  def get_from(o):
9004  return _object_cast_to_RigidMembersRefiner(o)
9005 
9006 RigidMembersRefiner_swigregister = _IMP_core.RigidMembersRefiner_swigregister
9007 RigidMembersRefiner_swigregister(RigidMembersRefiner)
9008 
9009 
9010 def get_rigid_members_refiner():
9011  """get_rigid_members_refiner() -> RigidMembersRefiner"""
9012  return _IMP_core.get_rigid_members_refiner()
9013 
9014 def transform(*args):
9015  """
9016  transform(XYZ a, Transformation3D tr)
9017  transform(RigidBody a, Transformation3D tr)
9018  """
9019  return _IMP_core.transform(*args)
9020 
9021 def get_initial_reference_frame(*args):
9022  """
9023  get_initial_reference_frame(Model m, IMP::ParticleIndexes const & pis) -> ReferenceFrame3D
9024  get_initial_reference_frame(IMP::ParticlesTemp const & ps) -> ReferenceFrame3D
9025  """
9026  return _IMP_core.get_initial_reference_frame(*args)
9027 
9028 def create_rigid_bodies(m, n, no_members=False):
9029  """
9030  create_rigid_bodies(Model m, unsigned int n, bool no_members=False) -> IMP::ParticlesTemp
9031  create_rigid_bodies(Model m, unsigned int n) -> IMP::ParticlesTemp
9032  """
9033  return _IMP_core.create_rigid_bodies(m, n, no_members)
9034 
9035 def show_rigid_body_hierarchy(*args):
9036  """
9037  show_rigid_body_hierarchy(RigidBody rb, TextOutput out)
9038  show_rigid_body_hierarchy(RigidBody rb)
9039  """
9040  return _IMP_core.show_rigid_body_hierarchy(*args)
9041 
9042 def get_root_rigid_body(m):
9043  """get_root_rigid_body(RigidMember m) -> ParticleIndex"""
9044  return _IMP_core.get_root_rigid_body(m)
9045 class RigidBodyHierarchyGeometry(IMP.display.SingletonGeometry):
9046  """Proxy of C++ IMP::core::RigidBodyHierarchyGeometry class."""
9047 
9048  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
9049 
9050  def __init__(self, rb, constituents):
9051  """__init__(IMP::core::RigidBodyHierarchyGeometry self, RigidBody rb, IMP::ParticlesTemp const & constituents) -> RigidBodyHierarchyGeometry"""
9052  this = _IMP_core.new_RigidBodyHierarchyGeometry(rb, constituents)
9053  try:
9054  self.this.append(this)
9055  except __builtin__.Exception:
9056  self.this = this
9057 
9058  def get_version_info(self):
9059  """get_version_info(RigidBodyHierarchyGeometry self) -> VersionInfo"""
9060  return _IMP_core.RigidBodyHierarchyGeometry_get_version_info(self)
9061 
9062 
9063  def __str__(self):
9064  """__str__(RigidBodyHierarchyGeometry self) -> std::string"""
9065  return _IMP_core.RigidBodyHierarchyGeometry___str__(self)
9066 
9067 
9068  def __repr__(self):
9069  """__repr__(RigidBodyHierarchyGeometry self) -> std::string"""
9070  return _IMP_core.RigidBodyHierarchyGeometry___repr__(self)
9071 
9072 
9073  @staticmethod
9074  def get_from(o):
9075  return _object_cast_to_RigidBodyHierarchyGeometry(o)
9076 
9077 RigidBodyHierarchyGeometry_swigregister = _IMP_core.RigidBodyHierarchyGeometry_swigregister
9078 RigidBodyHierarchyGeometry_swigregister(RigidBodyHierarchyGeometry)
9079 
9080 class RigidBodyDerivativeGeometry(IMP.display.SingletonGeometry):
9081  """Proxy of C++ IMP::core::RigidBodyDerivativeGeometry class."""
9082 
9083  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
9084 
9085  def __init__(self, *args):
9086  """
9087  __init__(IMP::core::RigidBodyDerivativeGeometry self, Particle p) -> RigidBodyDerivativeGeometry
9088  __init__(IMP::core::RigidBodyDerivativeGeometry self, RigidBody d) -> RigidBodyDerivativeGeometry
9089  """
9090  this = _IMP_core.new_RigidBodyDerivativeGeometry(*args)
9091  try:
9092  self.this.append(this)
9093  except __builtin__.Exception:
9094  self.this = this
9095 
9096  def get_version_info(self):
9097  """get_version_info(RigidBodyDerivativeGeometry self) -> VersionInfo"""
9098  return _IMP_core.RigidBodyDerivativeGeometry_get_version_info(self)
9099 
9100 
9101  def __str__(self):
9102  """__str__(RigidBodyDerivativeGeometry self) -> std::string"""
9103  return _IMP_core.RigidBodyDerivativeGeometry___str__(self)
9104 
9105 
9106  def __repr__(self):
9107  """__repr__(RigidBodyDerivativeGeometry self) -> std::string"""
9108  return _IMP_core.RigidBodyDerivativeGeometry___repr__(self)
9109 
9110 
9111  @staticmethod
9112  def get_from(o):
9113  return _object_cast_to_RigidBodyDerivativeGeometry(o)
9114 
9115 RigidBodyDerivativeGeometry_swigregister = _IMP_core.RigidBodyDerivativeGeometry_swigregister
9116 RigidBodyDerivativeGeometry_swigregister(RigidBodyDerivativeGeometry)
9117 
9118 class RigidBodyDerivativesGeometry(IMP.display.SingletonsGeometry):
9119  """Proxy of C++ IMP::core::RigidBodyDerivativesGeometry class."""
9120 
9121  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
9122 
9123  def __init__(self, sc):
9124  """__init__(IMP::core::RigidBodyDerivativesGeometry self, SingletonContainer sc) -> RigidBodyDerivativesGeometry"""
9125  this = _IMP_core.new_RigidBodyDerivativesGeometry(sc)
9126  try:
9127  self.this.append(this)
9128  except __builtin__.Exception:
9129  self.this = this
9130 
9131  def get_version_info(self):
9132  """get_version_info(RigidBodyDerivativesGeometry self) -> VersionInfo"""
9133  return _IMP_core.RigidBodyDerivativesGeometry_get_version_info(self)
9134 
9135 
9136  def __str__(self):
9137  """__str__(RigidBodyDerivativesGeometry self) -> std::string"""
9138  return _IMP_core.RigidBodyDerivativesGeometry___str__(self)
9139 
9140 
9141  def __repr__(self):
9142  """__repr__(RigidBodyDerivativesGeometry self) -> std::string"""
9143  return _IMP_core.RigidBodyDerivativesGeometry___repr__(self)
9144 
9145 
9146  @staticmethod
9147  def get_from(o):
9148  return _object_cast_to_RigidBodyDerivativesGeometry(o)
9149 
9150 RigidBodyDerivativesGeometry_swigregister = _IMP_core.RigidBodyDerivativesGeometry_swigregister
9151 RigidBodyDerivativesGeometry_swigregister(RigidBodyDerivativesGeometry)
9152 
9153 class RigidBodyFrameGeometry(IMP.display.SingletonGeometry):
9154  """Proxy of C++ IMP::core::RigidBodyFrameGeometry class."""
9155 
9156  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
9157 
9158  def __init__(self, *args):
9159  """
9160  __init__(IMP::core::RigidBodyFrameGeometry self, Particle p) -> RigidBodyFrameGeometry
9161  __init__(IMP::core::RigidBodyFrameGeometry self, RigidBody d) -> RigidBodyFrameGeometry
9162  """
9163  this = _IMP_core.new_RigidBodyFrameGeometry(*args)
9164  try:
9165  self.this.append(this)
9166  except __builtin__.Exception:
9167  self.this = this
9168 
9169  def get_version_info(self):
9170  """get_version_info(RigidBodyFrameGeometry self) -> VersionInfo"""
9171  return _IMP_core.RigidBodyFrameGeometry_get_version_info(self)
9172 
9173 
9174  def __str__(self):
9175  """__str__(RigidBodyFrameGeometry self) -> std::string"""
9176  return _IMP_core.RigidBodyFrameGeometry___str__(self)
9177 
9178 
9179  def __repr__(self):
9180  """__repr__(RigidBodyFrameGeometry self) -> std::string"""
9181  return _IMP_core.RigidBodyFrameGeometry___repr__(self)
9182 
9183 
9184  @staticmethod
9185  def get_from(o):
9186  return _object_cast_to_RigidBodyFrameGeometry(o)
9187 
9188 RigidBodyFrameGeometry_swigregister = _IMP_core.RigidBodyFrameGeometry_swigregister
9189 RigidBodyFrameGeometry_swigregister(RigidBodyFrameGeometry)
9190 
9191 class RigidBodyFramesGeometry(IMP.display.SingletonsGeometry):
9192  """Proxy of C++ IMP::core::RigidBodyFramesGeometry class."""
9193 
9194  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
9195 
9196  def __init__(self, sc):
9197  """__init__(IMP::core::RigidBodyFramesGeometry self, SingletonContainer sc) -> RigidBodyFramesGeometry"""
9198  this = _IMP_core.new_RigidBodyFramesGeometry(sc)
9199  try:
9200  self.this.append(this)
9201  except __builtin__.Exception:
9202  self.this = this
9203 
9204  def get_version_info(self):
9205  """get_version_info(RigidBodyFramesGeometry self) -> VersionInfo"""
9206  return _IMP_core.RigidBodyFramesGeometry_get_version_info(self)
9207 
9208 
9209  def __str__(self):
9210  """__str__(RigidBodyFramesGeometry self) -> std::string"""
9211  return _IMP_core.RigidBodyFramesGeometry___str__(self)
9212 
9213 
9214  def __repr__(self):
9215  """__repr__(RigidBodyFramesGeometry self) -> std::string"""
9216  return _IMP_core.RigidBodyFramesGeometry___repr__(self)
9217 
9218 
9219  @staticmethod
9220  def get_from(o):
9221  return _object_cast_to_RigidBodyFramesGeometry(o)
9222 
9223 RigidBodyFramesGeometry_swigregister = _IMP_core.RigidBodyFramesGeometry_swigregister
9224 RigidBodyFramesGeometry_swigregister(RigidBodyFramesGeometry)
9225 
9226 class RigidBodyTorque(IMP.display.SegmentGeometry):
9227  """Proxy of C++ IMP::core::RigidBodyTorque class."""
9228 
9229  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
9230 
9231  def __init__(self, p):
9232  """__init__(IMP::core::RigidBodyTorque self, Particle p) -> RigidBodyTorque"""
9233  this = _IMP_core.new_RigidBodyTorque(p)
9234  try:
9235  self.this.append(this)
9236  except __builtin__.Exception:
9237  self.this = this
9238 
9239  def __str__(self):
9240  """__str__(RigidBodyTorque self) -> std::string"""
9241  return _IMP_core.RigidBodyTorque___str__(self)
9242 
9243 
9244  def __repr__(self):
9245  """__repr__(RigidBodyTorque self) -> std::string"""
9246  return _IMP_core.RigidBodyTorque___repr__(self)
9247 
9248 
9249  @staticmethod
9250  def get_from(o):
9251  return _object_cast_to_RigidBodyTorque(o)
9252 
9253  __swig_destroy__ = _IMP_core.delete_RigidBodyTorque
9254  __del__ = lambda self: None
9255 RigidBodyTorque_swigregister = _IMP_core.RigidBodyTorque_swigregister
9256 RigidBodyTorque_swigregister(RigidBodyTorque)
9257 
9258 class NearestNeighborsClosePairsFinder(ClosePairsFinder):
9259  """Proxy of C++ IMP::core::NearestNeighborsClosePairsFinder class."""
9260 
9261  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
9262 
9263  def __init__(self):
9264  """__init__(IMP::core::NearestNeighborsClosePairsFinder self) -> NearestNeighborsClosePairsFinder"""
9265  this = _IMP_core.new_NearestNeighborsClosePairsFinder()
9266  try:
9267  self.this.append(this)
9268  except __builtin__.Exception:
9269  self.this = this
9270 
9271  def get_close_pairs(self, *args):
9272  """
9273  get_close_pairs(NearestNeighborsClosePairsFinder self, IMP::algebra::BoundingBox3Ds const & bbs) -> IMP::IntPairs
9274  get_close_pairs(NearestNeighborsClosePairsFinder self, IMP::algebra::BoundingBox3Ds const & bas, IMP::algebra::BoundingBox3Ds const & bbs) -> IMP::IntPairs
9275  get_close_pairs(NearestNeighborsClosePairsFinder self, Model m, IMP::ParticleIndexes const & pc) -> IMP::ParticleIndexPairs
9276  get_close_pairs(NearestNeighborsClosePairsFinder self, Model m, IMP::ParticleIndexes const & pca, IMP::ParticleIndexes const & pcb) -> IMP::ParticleIndexPairs
9277  """
9278  return _IMP_core.NearestNeighborsClosePairsFinder_get_close_pairs(self, *args)
9279 
9280 
9281  def do_get_inputs(self, m, pis):
9282  """do_get_inputs(NearestNeighborsClosePairsFinder self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
9283  return _IMP_core.NearestNeighborsClosePairsFinder_do_get_inputs(self, m, pis)
9284 
9285 
9286  def get_version_info(self):
9287  """get_version_info(NearestNeighborsClosePairsFinder self) -> VersionInfo"""
9288  return _IMP_core.NearestNeighborsClosePairsFinder_get_version_info(self)
9289 
9290 
9291  def __str__(self):
9292  """__str__(NearestNeighborsClosePairsFinder self) -> std::string"""
9293  return _IMP_core.NearestNeighborsClosePairsFinder___str__(self)
9294 
9295 
9296  def __repr__(self):
9297  """__repr__(NearestNeighborsClosePairsFinder self) -> std::string"""
9298  return _IMP_core.NearestNeighborsClosePairsFinder___repr__(self)
9299 
9300 
9301  @staticmethod
9302  def get_from(o):
9303  return _object_cast_to_NearestNeighborsClosePairsFinder(o)
9304 
9305 NearestNeighborsClosePairsFinder_swigregister = _IMP_core.NearestNeighborsClosePairsFinder_swigregister
9306 NearestNeighborsClosePairsFinder_swigregister(NearestNeighborsClosePairsFinder)
9307 
9308 class RestraintsScoringFunction(IMP.ScoringFunction):
9309  """Proxy of C++ IMP::core::RestraintsScoringFunction class."""
9310 
9311  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
9312 
9313  def __init__(self, *args):
9314  """
9315  __init__(IMP::core::RestraintsScoringFunction self, _RestraintsAdaptor rs, double weight=1.0, double max, std::string name) -> RestraintsScoringFunction
9316  __init__(IMP::core::RestraintsScoringFunction self, _RestraintsAdaptor rs, double weight=1.0, double max) -> RestraintsScoringFunction
9317  __init__(IMP::core::RestraintsScoringFunction self, _RestraintsAdaptor rs, double weight=1.0) -> RestraintsScoringFunction
9318  __init__(IMP::core::RestraintsScoringFunction self, _RestraintsAdaptor rs) -> RestraintsScoringFunction
9319  __init__(IMP::core::RestraintsScoringFunction self, _RestraintsAdaptor rs, std::string name) -> RestraintsScoringFunction
9320  """
9321  this = _IMP_core.new_RestraintsScoringFunction(*args)
9322  try:
9323  self.this.append(this)
9324  except __builtin__.Exception:
9325  self.this = this
9326 
9327  def do_add_score_and_derivatives(self, sa, ss):
9328  """do_add_score_and_derivatives(RestraintsScoringFunction self, ScoreAccumulator sa, IMP::ScoreStatesTemp const & ss)"""
9329  return _IMP_core.RestraintsScoringFunction_do_add_score_and_derivatives(self, sa, ss)
9330 
9331 
9332  def do_get_inputs(self):
9333  """do_get_inputs(RestraintsScoringFunction self) -> IMP::ModelObjectsTemp"""
9334  return _IMP_core.RestraintsScoringFunction_do_get_inputs(self)
9335 
9336 
9337  def get_version_info(self):
9338  """get_version_info(RestraintsScoringFunction self) -> VersionInfo"""
9339  return _IMP_core.RestraintsScoringFunction_get_version_info(self)
9340 
9341 
9342  def __str__(self):
9343  """__str__(RestraintsScoringFunction self) -> std::string"""
9344  return _IMP_core.RestraintsScoringFunction___str__(self)
9345 
9346 
9347  def __repr__(self):
9348  """__repr__(RestraintsScoringFunction self) -> std::string"""
9349  return _IMP_core.RestraintsScoringFunction___repr__(self)
9350 
9351 
9352  @staticmethod
9353  def get_from(o):
9354  return _object_cast_to_RestraintsScoringFunction(o)
9355 
9356 RestraintsScoringFunction_swigregister = _IMP_core.RestraintsScoringFunction_swigregister
9357 RestraintsScoringFunction_swigregister(RestraintsScoringFunction)
9358 
9359 class RigidClosePairsFinder(ClosePairsFinder):
9360  """Proxy of C++ IMP::core::RigidClosePairsFinder class."""
9361 
9362  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
9363 
9364  def __init__(self, cpf=None):
9365  """
9366  __init__(IMP::core::RigidClosePairsFinder self, ClosePairsFinder cpf=None) -> RigidClosePairsFinder
9367  __init__(IMP::core::RigidClosePairsFinder self) -> RigidClosePairsFinder
9368  """
9369  this = _IMP_core.new_RigidClosePairsFinder(cpf)
9370  try:
9371  self.this.append(this)
9372  except __builtin__.Exception:
9373  self.this = this
9374 
9375  def do_get_inputs(self, m, pis):
9376  """do_get_inputs(RigidClosePairsFinder self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
9377  return _IMP_core.RigidClosePairsFinder_do_get_inputs(self, m, pis)
9378 
9379 
9380  def get_close_pairs(self, *args):
9381  """
9382  get_close_pairs(RigidClosePairsFinder self, Model m, ParticleIndex a, ParticleIndex b, IMP::ParticleIndexes const & pa, IMP::ParticleIndexes const & pb) -> IMP::ParticleIndexPairs
9383  get_close_pairs(RigidClosePairsFinder self, IMP::algebra::BoundingBox3Ds const & bbs) -> IMP::IntPairs
9384  get_close_pairs(RigidClosePairsFinder self, IMP::algebra::BoundingBox3Ds const & bas, IMP::algebra::BoundingBox3Ds const & bbs) -> IMP::IntPairs
9385  get_close_pairs(RigidClosePairsFinder self, Model m, IMP::ParticleIndexes const & pc) -> IMP::ParticleIndexPairs
9386  get_close_pairs(RigidClosePairsFinder self, Model m, IMP::ParticleIndexes const & pca, IMP::ParticleIndexes const & pcb) -> IMP::ParticleIndexPairs
9387  """
9388  return _IMP_core.RigidClosePairsFinder_get_close_pairs(self, *args)
9389 
9390 
9391  def get_version_info(self):
9392  """get_version_info(RigidClosePairsFinder self) -> VersionInfo"""
9393  return _IMP_core.RigidClosePairsFinder_get_version_info(self)
9394 
9395 
9396  def __str__(self):
9397  """__str__(RigidClosePairsFinder self) -> std::string"""
9398  return _IMP_core.RigidClosePairsFinder___str__(self)
9399 
9400 
9401  def __repr__(self):
9402  """__repr__(RigidClosePairsFinder self) -> std::string"""
9403  return _IMP_core.RigidClosePairsFinder___repr__(self)
9404 
9405 
9406  @staticmethod
9407  def get_from(o):
9408  return _object_cast_to_RigidClosePairsFinder(o)
9409 
9410 RigidClosePairsFinder_swigregister = _IMP_core.RigidClosePairsFinder_swigregister
9411 RigidClosePairsFinder_swigregister(RigidClosePairsFinder)
9412 
9413 class SphereDistancePairScore(IMP.PairScore):
9414  """Proxy of C++ IMP::core::SphereDistancePairScore class."""
9415 
9416  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
9417 
9418  def __init__(self, *args):
9419  """
9420  __init__(IMP::core::SphereDistancePairScore self, UnaryFunction uf, std::string name) -> SphereDistancePairScore
9421  __init__(IMP::core::SphereDistancePairScore self, UnaryFunction uf) -> SphereDistancePairScore
9422  """
9423  this = _IMP_core.new_SphereDistancePairScore(*args)
9424  try:
9425  self.this.append(this)
9426  except __builtin__.Exception:
9427  self.this = this
9428 
9429  def do_get_inputs(self, m, pis):
9430  """do_get_inputs(SphereDistancePairScore self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
9431  return _IMP_core.SphereDistancePairScore_do_get_inputs(self, m, pis)
9432 
9433 
9434  def get_version_info(self):
9435  """get_version_info(SphereDistancePairScore self) -> VersionInfo"""
9436  return _IMP_core.SphereDistancePairScore_get_version_info(self)
9437 
9438 
9439  def __str__(self):
9440  """__str__(SphereDistancePairScore self) -> std::string"""
9441  return _IMP_core.SphereDistancePairScore___str__(self)
9442 
9443 
9444  def __repr__(self):
9445  """__repr__(SphereDistancePairScore self) -> std::string"""
9446  return _IMP_core.SphereDistancePairScore___repr__(self)
9447 
9448 
9449  @staticmethod
9450  def get_from(o):
9451  return _object_cast_to_SphereDistancePairScore(o)
9452 
9453 SphereDistancePairScore_swigregister = _IMP_core.SphereDistancePairScore_swigregister
9454 SphereDistancePairScore_swigregister(SphereDistancePairScore)
9455 
9456 class HarmonicUpperBoundSphereDistancePairScore(IMP.PairScore):
9457  """Proxy of C++ IMP::core::HarmonicUpperBoundSphereDistancePairScore class."""
9458 
9459  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
9460 
9461  def __init__(self, *args):
9462  """
9463  __init__(IMP::core::HarmonicUpperBoundSphereDistancePairScore self, double x0, double k, std::string name) -> HarmonicUpperBoundSphereDistancePairScore
9464  __init__(IMP::core::HarmonicUpperBoundSphereDistancePairScore self, double x0, double k) -> HarmonicUpperBoundSphereDistancePairScore
9465  """
9466  this = _IMP_core.new_HarmonicUpperBoundSphereDistancePairScore(*args)
9467  try:
9468  self.this.append(this)
9469  except __builtin__.Exception:
9470  self.this = this
9471 
9472  def do_get_inputs(self, m, pis):
9473  """do_get_inputs(HarmonicUpperBoundSphereDistancePairScore self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
9474  return _IMP_core.HarmonicUpperBoundSphereDistancePairScore_do_get_inputs(self, m, pis)
9475 
9476 
9477  def get_version_info(self):
9478  """get_version_info(HarmonicUpperBoundSphereDistancePairScore self) -> VersionInfo"""
9479  return _IMP_core.HarmonicUpperBoundSphereDistancePairScore_get_version_info(self)
9480 
9481 
9482  def __str__(self):
9483  """__str__(HarmonicUpperBoundSphereDistancePairScore self) -> std::string"""
9484  return _IMP_core.HarmonicUpperBoundSphereDistancePairScore___str__(self)
9485 
9486 
9487  def __repr__(self):
9488  """__repr__(HarmonicUpperBoundSphereDistancePairScore self) -> std::string"""
9489  return _IMP_core.HarmonicUpperBoundSphereDistancePairScore___repr__(self)
9490 
9491 
9492  @staticmethod
9493  def get_from(o):
9494  return _object_cast_to_HarmonicUpperBoundSphereDistancePairScore(o)
9495 
9496 HarmonicUpperBoundSphereDistancePairScore_swigregister = _IMP_core.HarmonicUpperBoundSphereDistancePairScore_swigregister
9497 HarmonicUpperBoundSphereDistancePairScore_swigregister(HarmonicUpperBoundSphereDistancePairScore)
9498 
9499 class HarmonicUpperBoundSphereDiameterPairScore(IMP.PairScore):
9500  """Proxy of C++ IMP::core::HarmonicUpperBoundSphereDiameterPairScore class."""
9501 
9502  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
9503 
9504  def __init__(self, d0, k):
9505  """__init__(IMP::core::HarmonicUpperBoundSphereDiameterPairScore self, double d0, double k) -> HarmonicUpperBoundSphereDiameterPairScore"""
9506  this = _IMP_core.new_HarmonicUpperBoundSphereDiameterPairScore(d0, k)
9507  try:
9508  self.this.append(this)
9509  except __builtin__.Exception:
9510  self.this = this
9511 
9512  def get_rest_length(self):
9513  """get_rest_length(HarmonicUpperBoundSphereDiameterPairScore self) -> double"""
9514  return _IMP_core.HarmonicUpperBoundSphereDiameterPairScore_get_rest_length(self)
9515 
9516 
9517  def get_stiffness(self):
9518  """get_stiffness(HarmonicUpperBoundSphereDiameterPairScore self) -> double"""
9519  return _IMP_core.HarmonicUpperBoundSphereDiameterPairScore_get_stiffness(self)
9520 
9521 
9522  def do_get_inputs(self, m, pis):
9523  """do_get_inputs(HarmonicUpperBoundSphereDiameterPairScore self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
9524  return _IMP_core.HarmonicUpperBoundSphereDiameterPairScore_do_get_inputs(self, m, pis)
9525 
9526 
9527  def get_version_info(self):
9528  """get_version_info(HarmonicUpperBoundSphereDiameterPairScore self) -> VersionInfo"""
9529  return _IMP_core.HarmonicUpperBoundSphereDiameterPairScore_get_version_info(self)
9530 
9531 
9532  def __str__(self):
9533  """__str__(HarmonicUpperBoundSphereDiameterPairScore self) -> std::string"""
9534  return _IMP_core.HarmonicUpperBoundSphereDiameterPairScore___str__(self)
9535 
9536 
9537  def __repr__(self):
9538  """__repr__(HarmonicUpperBoundSphereDiameterPairScore self) -> std::string"""
9539  return _IMP_core.HarmonicUpperBoundSphereDiameterPairScore___repr__(self)
9540 
9541 
9542  @staticmethod
9543  def get_from(o):
9544  return _object_cast_to_HarmonicUpperBoundSphereDiameterPairScore(o)
9545 
9546 HarmonicUpperBoundSphereDiameterPairScore_swigregister = _IMP_core.HarmonicUpperBoundSphereDiameterPairScore_swigregister
9547 HarmonicUpperBoundSphereDiameterPairScore_swigregister(HarmonicUpperBoundSphereDiameterPairScore)
9548 
9549 class HarmonicSphereDistancePairScore(IMP.PairScore):
9550  """Proxy of C++ IMP::core::HarmonicSphereDistancePairScore class."""
9551 
9552  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
9553 
9554  def __init__(self, *args):
9555  """
9556  __init__(IMP::core::HarmonicSphereDistancePairScore self, double x0, double k, std::string name) -> HarmonicSphereDistancePairScore
9557  __init__(IMP::core::HarmonicSphereDistancePairScore self, double x0, double k) -> HarmonicSphereDistancePairScore
9558  """
9559  this = _IMP_core.new_HarmonicSphereDistancePairScore(*args)
9560  try:
9561  self.this.append(this)
9562  except __builtin__.Exception:
9563  self.this = this
9564 
9565  def do_get_inputs(self, m, pis):
9566  """do_get_inputs(HarmonicSphereDistancePairScore self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
9567  return _IMP_core.HarmonicSphereDistancePairScore_do_get_inputs(self, m, pis)
9568 
9569 
9570  def get_version_info(self):
9571  """get_version_info(HarmonicSphereDistancePairScore self) -> VersionInfo"""
9572  return _IMP_core.HarmonicSphereDistancePairScore_get_version_info(self)
9573 
9574 
9575  def __str__(self):
9576  """__str__(HarmonicSphereDistancePairScore self) -> std::string"""
9577  return _IMP_core.HarmonicSphereDistancePairScore___str__(self)
9578 
9579 
9580  def __repr__(self):
9581  """__repr__(HarmonicSphereDistancePairScore self) -> std::string"""
9582  return _IMP_core.HarmonicSphereDistancePairScore___repr__(self)
9583 
9584 
9585  @staticmethod
9586  def get_from(o):
9587  return _object_cast_to_HarmonicSphereDistancePairScore(o)
9588 
9589 HarmonicSphereDistancePairScore_swigregister = _IMP_core.HarmonicSphereDistancePairScore_swigregister
9590 HarmonicSphereDistancePairScore_swigregister(HarmonicSphereDistancePairScore)
9591 
9592 class NormalizedSphereDistancePairScore(IMP.PairScore):
9593  """Proxy of C++ IMP::core::NormalizedSphereDistancePairScore class."""
9594 
9595  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
9596 
9597  def __init__(self, *args):
9598  """
9599  __init__(IMP::core::NormalizedSphereDistancePairScore self, UnaryFunction f, FloatKey radius) -> NormalizedSphereDistancePairScore
9600  __init__(IMP::core::NormalizedSphereDistancePairScore self, UnaryFunction f) -> NormalizedSphereDistancePairScore
9601  """
9602  this = _IMP_core.new_NormalizedSphereDistancePairScore(*args)
9603  try:
9604  self.this.append(this)
9605  except __builtin__.Exception:
9606  self.this = this
9607 
9608  def do_get_inputs(self, m, pis):
9609  """do_get_inputs(NormalizedSphereDistancePairScore self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
9610  return _IMP_core.NormalizedSphereDistancePairScore_do_get_inputs(self, m, pis)
9611 
9612 
9613  def get_version_info(self):
9614  """get_version_info(NormalizedSphereDistancePairScore self) -> VersionInfo"""
9615  return _IMP_core.NormalizedSphereDistancePairScore_get_version_info(self)
9616 
9617 
9618  def __str__(self):
9619  """__str__(NormalizedSphereDistancePairScore self) -> std::string"""
9620  return _IMP_core.NormalizedSphereDistancePairScore___str__(self)
9621 
9622 
9623  def __repr__(self):
9624  """__repr__(NormalizedSphereDistancePairScore self) -> std::string"""
9625  return _IMP_core.NormalizedSphereDistancePairScore___repr__(self)
9626 
9627 
9628  @staticmethod
9629  def get_from(o):
9630  return _object_cast_to_NormalizedSphereDistancePairScore(o)
9631 
9632 NormalizedSphereDistancePairScore_swigregister = _IMP_core.NormalizedSphereDistancePairScore_swigregister
9633 NormalizedSphereDistancePairScore_swigregister(NormalizedSphereDistancePairScore)
9634 
9635 class WeightedSphereDistancePairScore(IMP.PairScore):
9636  """Proxy of C++ IMP::core::WeightedSphereDistancePairScore class."""
9637 
9638  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
9639 
9640  def __init__(self, *args):
9641  """
9642  __init__(IMP::core::WeightedSphereDistancePairScore self, UnaryFunction f, FloatKey weight, FloatKey radius) -> WeightedSphereDistancePairScore
9643  __init__(IMP::core::WeightedSphereDistancePairScore self, UnaryFunction f, FloatKey weight) -> WeightedSphereDistancePairScore
9644  """
9645  this = _IMP_core.new_WeightedSphereDistancePairScore(*args)
9646  try:
9647  self.this.append(this)
9648  except __builtin__.Exception:
9649  self.this = this
9650 
9651  def do_get_inputs(self, m, pis):
9652  """do_get_inputs(WeightedSphereDistancePairScore self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
9653  return _IMP_core.WeightedSphereDistancePairScore_do_get_inputs(self, m, pis)
9654 
9655 
9656  def get_version_info(self):
9657  """get_version_info(WeightedSphereDistancePairScore self) -> VersionInfo"""
9658  return _IMP_core.WeightedSphereDistancePairScore_get_version_info(self)
9659 
9660 
9661  def __str__(self):
9662  """__str__(WeightedSphereDistancePairScore self) -> std::string"""
9663  return _IMP_core.WeightedSphereDistancePairScore___str__(self)
9664 
9665 
9666  def __repr__(self):
9667  """__repr__(WeightedSphereDistancePairScore self) -> std::string"""
9668  return _IMP_core.WeightedSphereDistancePairScore___repr__(self)
9669 
9670 
9671  @staticmethod
9672  def get_from(o):
9673  return _object_cast_to_WeightedSphereDistancePairScore(o)
9674 
9675 WeightedSphereDistancePairScore_swigregister = _IMP_core.WeightedSphereDistancePairScore_swigregister
9676 WeightedSphereDistancePairScore_swigregister(WeightedSphereDistancePairScore)
9677 
9678 class SoftSpherePairScore(IMP.PairScore):
9679  """Proxy of C++ IMP::core::SoftSpherePairScore class."""
9680 
9681  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
9682 
9683  def __init__(self, *args):
9684  """
9685  __init__(IMP::core::SoftSpherePairScore self, double k, std::string name) -> SoftSpherePairScore
9686  __init__(IMP::core::SoftSpherePairScore self, double k) -> SoftSpherePairScore
9687  """
9688  this = _IMP_core.new_SoftSpherePairScore(*args)
9689  try:
9690  self.this.append(this)
9691  except __builtin__.Exception:
9692  self.this = this
9693 
9694  def do_get_inputs(self, m, pis):
9695  """do_get_inputs(SoftSpherePairScore self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
9696  return _IMP_core.SoftSpherePairScore_do_get_inputs(self, m, pis)
9697 
9698 
9699  def get_version_info(self):
9700  """get_version_info(SoftSpherePairScore self) -> VersionInfo"""
9701  return _IMP_core.SoftSpherePairScore_get_version_info(self)
9702 
9703 
9704  def __str__(self):
9705  """__str__(SoftSpherePairScore self) -> std::string"""
9706  return _IMP_core.SoftSpherePairScore___str__(self)
9707 
9708 
9709  def __repr__(self):
9710  """__repr__(SoftSpherePairScore self) -> std::string"""
9711  return _IMP_core.SoftSpherePairScore___repr__(self)
9712 
9713 
9714  @staticmethod
9715  def get_from(o):
9716  return _object_cast_to_SoftSpherePairScore(o)
9717 
9718 SoftSpherePairScore_swigregister = _IMP_core.SoftSpherePairScore_swigregister
9719 SoftSpherePairScore_swigregister(SoftSpherePairScore)
9720 
9721 class SurfaceDistancePairScore(IMP.PairScore):
9722  """Proxy of C++ IMP::core::SurfaceDistancePairScore class."""
9723 
9724  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
9725 
9726  def __init__(self, *args):
9727  """
9728  __init__(IMP::core::SurfaceDistancePairScore self, UnaryFunction uf, std::string name) -> SurfaceDistancePairScore
9729  __init__(IMP::core::SurfaceDistancePairScore self, UnaryFunction uf) -> SurfaceDistancePairScore
9730  """
9731  this = _IMP_core.new_SurfaceDistancePairScore(*args)
9732  try:
9733  self.this.append(this)
9734  except __builtin__.Exception:
9735  self.this = this
9736 
9737  def do_get_inputs(self, m, pis):
9738  """do_get_inputs(SurfaceDistancePairScore self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
9739  return _IMP_core.SurfaceDistancePairScore_do_get_inputs(self, m, pis)
9740 
9741 
9742  def get_version_info(self):
9743  """get_version_info(SurfaceDistancePairScore self) -> VersionInfo"""
9744  return _IMP_core.SurfaceDistancePairScore_get_version_info(self)
9745 
9746 
9747  def __str__(self):
9748  """__str__(SurfaceDistancePairScore self) -> std::string"""
9749  return _IMP_core.SurfaceDistancePairScore___str__(self)
9750 
9751 
9752  def __repr__(self):
9753  """__repr__(SurfaceDistancePairScore self) -> std::string"""
9754  return _IMP_core.SurfaceDistancePairScore___repr__(self)
9755 
9756 
9757  @staticmethod
9758  def get_from(o):
9759  return _object_cast_to_SurfaceDistancePairScore(o)
9760 
9761 SurfaceDistancePairScore_swigregister = _IMP_core.SurfaceDistancePairScore_swigregister
9762 SurfaceDistancePairScore_swigregister(SurfaceDistancePairScore)
9763 
9764 class SurfaceHeightPairScore(IMP.PairScore):
9765  """Proxy of C++ IMP::core::SurfaceHeightPairScore class."""
9766 
9767  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
9768 
9769  def __init__(self, *args):
9770  """
9771  __init__(IMP::core::SurfaceHeightPairScore self, UnaryFunction uf, std::string name) -> SurfaceHeightPairScore
9772  __init__(IMP::core::SurfaceHeightPairScore self, UnaryFunction uf) -> SurfaceHeightPairScore
9773  """
9774  this = _IMP_core.new_SurfaceHeightPairScore(*args)
9775  try:
9776  self.this.append(this)
9777  except __builtin__.Exception:
9778  self.this = this
9779 
9780  def do_get_inputs(self, m, pis):
9781  """do_get_inputs(SurfaceHeightPairScore self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
9782  return _IMP_core.SurfaceHeightPairScore_do_get_inputs(self, m, pis)
9783 
9784 
9785  def get_version_info(self):
9786  """get_version_info(SurfaceHeightPairScore self) -> VersionInfo"""
9787  return _IMP_core.SurfaceHeightPairScore_get_version_info(self)
9788 
9789 
9790  def __str__(self):
9791  """__str__(SurfaceHeightPairScore self) -> std::string"""
9792  return _IMP_core.SurfaceHeightPairScore___str__(self)
9793 
9794 
9795  def __repr__(self):
9796  """__repr__(SurfaceHeightPairScore self) -> std::string"""
9797  return _IMP_core.SurfaceHeightPairScore___repr__(self)
9798 
9799 
9800  @staticmethod
9801  def get_from(o):
9802  return _object_cast_to_SurfaceHeightPairScore(o)
9803 
9804 SurfaceHeightPairScore_swigregister = _IMP_core.SurfaceHeightPairScore_swigregister
9805 SurfaceHeightPairScore_swigregister(SurfaceHeightPairScore)
9806 
9807 class SurfaceDepthPairScore(IMP.PairScore):
9808  """Proxy of C++ IMP::core::SurfaceDepthPairScore class."""
9809 
9810  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
9811 
9812  def __init__(self, *args):
9813  """
9814  __init__(IMP::core::SurfaceDepthPairScore self, UnaryFunction uf, std::string name) -> SurfaceDepthPairScore
9815  __init__(IMP::core::SurfaceDepthPairScore self, UnaryFunction uf) -> SurfaceDepthPairScore
9816  """
9817  this = _IMP_core.new_SurfaceDepthPairScore(*args)
9818  try:
9819  self.this.append(this)
9820  except __builtin__.Exception:
9821  self.this = this
9822 
9823  def do_get_inputs(self, m, pis):
9824  """do_get_inputs(SurfaceDepthPairScore self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
9825  return _IMP_core.SurfaceDepthPairScore_do_get_inputs(self, m, pis)
9826 
9827 
9828  def get_version_info(self):
9829  """get_version_info(SurfaceDepthPairScore self) -> VersionInfo"""
9830  return _IMP_core.SurfaceDepthPairScore_get_version_info(self)
9831 
9832 
9833  def __str__(self):
9834  """__str__(SurfaceDepthPairScore self) -> std::string"""
9835  return _IMP_core.SurfaceDepthPairScore___str__(self)
9836 
9837 
9838  def __repr__(self):
9839  """__repr__(SurfaceDepthPairScore self) -> std::string"""
9840  return _IMP_core.SurfaceDepthPairScore___repr__(self)
9841 
9842 
9843  @staticmethod
9844  def get_from(o):
9845  return _object_cast_to_SurfaceDepthPairScore(o)
9846 
9847 SurfaceDepthPairScore_swigregister = _IMP_core.SurfaceDepthPairScore_swigregister
9848 SurfaceDepthPairScore_swigregister(SurfaceDepthPairScore)
9849 
9850 class HarmonicSurfaceDistancePairScore(IMP.PairScore):
9851  """Proxy of C++ IMP::core::HarmonicSurfaceDistancePairScore class."""
9852 
9853  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
9854 
9855  def __init__(self, *args):
9856  """
9857  __init__(IMP::core::HarmonicSurfaceDistancePairScore self, double x0, double k, std::string name) -> HarmonicSurfaceDistancePairScore
9858  __init__(IMP::core::HarmonicSurfaceDistancePairScore self, double x0, double k) -> HarmonicSurfaceDistancePairScore
9859  """
9860  this = _IMP_core.new_HarmonicSurfaceDistancePairScore(*args)
9861  try:
9862  self.this.append(this)
9863  except __builtin__.Exception:
9864  self.this = this
9865 
9866  def do_get_inputs(self, m, pis):
9867  """do_get_inputs(HarmonicSurfaceDistancePairScore self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
9868  return _IMP_core.HarmonicSurfaceDistancePairScore_do_get_inputs(self, m, pis)
9869 
9870 
9871  def get_version_info(self):
9872  """get_version_info(HarmonicSurfaceDistancePairScore self) -> VersionInfo"""
9873  return _IMP_core.HarmonicSurfaceDistancePairScore_get_version_info(self)
9874 
9875 
9876  def __str__(self):
9877  """__str__(HarmonicSurfaceDistancePairScore self) -> std::string"""
9878  return _IMP_core.HarmonicSurfaceDistancePairScore___str__(self)
9879 
9880 
9881  def __repr__(self):
9882  """__repr__(HarmonicSurfaceDistancePairScore self) -> std::string"""
9883  return _IMP_core.HarmonicSurfaceDistancePairScore___repr__(self)
9884 
9885 
9886  @staticmethod
9887  def get_from(o):
9888  return _object_cast_to_HarmonicSurfaceDistancePairScore(o)
9889 
9890 HarmonicSurfaceDistancePairScore_swigregister = _IMP_core.HarmonicSurfaceDistancePairScore_swigregister
9891 HarmonicSurfaceDistancePairScore_swigregister(HarmonicSurfaceDistancePairScore)
9892 
9893 class HarmonicSurfaceHeightPairScore(IMP.PairScore):
9894  """Proxy of C++ IMP::core::HarmonicSurfaceHeightPairScore class."""
9895 
9896  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
9897 
9898  def __init__(self, *args):
9899  """
9900  __init__(IMP::core::HarmonicSurfaceHeightPairScore self, double x0, double k, std::string name) -> HarmonicSurfaceHeightPairScore
9901  __init__(IMP::core::HarmonicSurfaceHeightPairScore self, double x0, double k) -> HarmonicSurfaceHeightPairScore
9902  """
9903  this = _IMP_core.new_HarmonicSurfaceHeightPairScore(*args)
9904  try:
9905  self.this.append(this)
9906  except __builtin__.Exception:
9907  self.this = this
9908 
9909  def do_get_inputs(self, m, pis):
9910  """do_get_inputs(HarmonicSurfaceHeightPairScore self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
9911  return _IMP_core.HarmonicSurfaceHeightPairScore_do_get_inputs(self, m, pis)
9912 
9913 
9914  def get_version_info(self):
9915  """get_version_info(HarmonicSurfaceHeightPairScore self) -> VersionInfo"""
9916  return _IMP_core.HarmonicSurfaceHeightPairScore_get_version_info(self)
9917 
9918 
9919  def __str__(self):
9920  """__str__(HarmonicSurfaceHeightPairScore self) -> std::string"""
9921  return _IMP_core.HarmonicSurfaceHeightPairScore___str__(self)
9922 
9923 
9924  def __repr__(self):
9925  """__repr__(HarmonicSurfaceHeightPairScore self) -> std::string"""
9926  return _IMP_core.HarmonicSurfaceHeightPairScore___repr__(self)
9927 
9928 
9929  @staticmethod
9930  def get_from(o):
9931  return _object_cast_to_HarmonicSurfaceHeightPairScore(o)
9932 
9933 HarmonicSurfaceHeightPairScore_swigregister = _IMP_core.HarmonicSurfaceHeightPairScore_swigregister
9934 HarmonicSurfaceHeightPairScore_swigregister(HarmonicSurfaceHeightPairScore)
9935 
9936 class HarmonicSurfaceDepthPairScore(IMP.PairScore):
9937  """Proxy of C++ IMP::core::HarmonicSurfaceDepthPairScore class."""
9938 
9939  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
9940 
9941  def __init__(self, *args):
9942  """
9943  __init__(IMP::core::HarmonicSurfaceDepthPairScore self, double x0, double k, std::string name) -> HarmonicSurfaceDepthPairScore
9944  __init__(IMP::core::HarmonicSurfaceDepthPairScore self, double x0, double k) -> HarmonicSurfaceDepthPairScore
9945  """
9946  this = _IMP_core.new_HarmonicSurfaceDepthPairScore(*args)
9947  try:
9948  self.this.append(this)
9949  except __builtin__.Exception:
9950  self.this = this
9951 
9952  def do_get_inputs(self, m, pis):
9953  """do_get_inputs(HarmonicSurfaceDepthPairScore self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
9954  return _IMP_core.HarmonicSurfaceDepthPairScore_do_get_inputs(self, m, pis)
9955 
9956 
9957  def get_version_info(self):
9958  """get_version_info(HarmonicSurfaceDepthPairScore self) -> VersionInfo"""
9959  return _IMP_core.HarmonicSurfaceDepthPairScore_get_version_info(self)
9960 
9961 
9962  def __str__(self):
9963  """__str__(HarmonicSurfaceDepthPairScore self) -> std::string"""
9964  return _IMP_core.HarmonicSurfaceDepthPairScore___str__(self)
9965 
9966 
9967  def __repr__(self):
9968  """__repr__(HarmonicSurfaceDepthPairScore self) -> std::string"""
9969  return _IMP_core.HarmonicSurfaceDepthPairScore___repr__(self)
9970 
9971 
9972  @staticmethod
9973  def get_from(o):
9974  return _object_cast_to_HarmonicSurfaceDepthPairScore(o)
9975 
9976 HarmonicSurfaceDepthPairScore_swigregister = _IMP_core.HarmonicSurfaceDepthPairScore_swigregister
9977 HarmonicSurfaceDepthPairScore_swigregister(HarmonicSurfaceDepthPairScore)
9978 
9979 class SoftSuperSurfacePairScore(IMP.PairScore):
9980  """Proxy of C++ IMP::core::SoftSuperSurfacePairScore class."""
9981 
9982  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
9983 
9984  def __init__(self, *args):
9985  """
9986  __init__(IMP::core::SoftSuperSurfacePairScore self, double k, std::string name) -> SoftSuperSurfacePairScore
9987  __init__(IMP::core::SoftSuperSurfacePairScore self, double k) -> SoftSuperSurfacePairScore
9988  """
9989  this = _IMP_core.new_SoftSuperSurfacePairScore(*args)
9990  try:
9991  self.this.append(this)
9992  except __builtin__.Exception:
9993  self.this = this
9994 
9995  def do_get_inputs(self, m, pis):
9996  """do_get_inputs(SoftSuperSurfacePairScore self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
9997  return _IMP_core.SoftSuperSurfacePairScore_do_get_inputs(self, m, pis)
9998 
9999 
10000  def get_version_info(self):
10001  """get_version_info(SoftSuperSurfacePairScore self) -> VersionInfo"""
10002  return _IMP_core.SoftSuperSurfacePairScore_get_version_info(self)
10003 
10004 
10005  def __str__(self):
10006  """__str__(SoftSuperSurfacePairScore self) -> std::string"""
10007  return _IMP_core.SoftSuperSurfacePairScore___str__(self)
10008 
10009 
10010  def __repr__(self):
10011  """__repr__(SoftSuperSurfacePairScore self) -> std::string"""
10012  return _IMP_core.SoftSuperSurfacePairScore___repr__(self)
10013 
10014 
10015  @staticmethod
10016  def get_from(o):
10017  return _object_cast_to_SoftSuperSurfacePairScore(o)
10018 
10019 SoftSuperSurfacePairScore_swigregister = _IMP_core.SoftSuperSurfacePairScore_swigregister
10020 SoftSuperSurfacePairScore_swigregister(SoftSuperSurfacePairScore)
10021 
10022 class SoftSubSurfacePairScore(IMP.PairScore):
10023  """Proxy of C++ IMP::core::SoftSubSurfacePairScore class."""
10024 
10025  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
10026 
10027  def __init__(self, *args):
10028  """
10029  __init__(IMP::core::SoftSubSurfacePairScore self, double k, std::string name) -> SoftSubSurfacePairScore
10030  __init__(IMP::core::SoftSubSurfacePairScore self, double k) -> SoftSubSurfacePairScore
10031  """
10032  this = _IMP_core.new_SoftSubSurfacePairScore(*args)
10033  try:
10034  self.this.append(this)
10035  except __builtin__.Exception:
10036  self.this = this
10037 
10038  def do_get_inputs(self, m, pis):
10039  """do_get_inputs(SoftSubSurfacePairScore self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
10040  return _IMP_core.SoftSubSurfacePairScore_do_get_inputs(self, m, pis)
10041 
10042 
10043  def get_version_info(self):
10044  """get_version_info(SoftSubSurfacePairScore self) -> VersionInfo"""
10045  return _IMP_core.SoftSubSurfacePairScore_get_version_info(self)
10046 
10047 
10048  def __str__(self):
10049  """__str__(SoftSubSurfacePairScore self) -> std::string"""
10050  return _IMP_core.SoftSubSurfacePairScore___str__(self)
10051 
10052 
10053  def __repr__(self):
10054  """__repr__(SoftSubSurfacePairScore self) -> std::string"""
10055  return _IMP_core.SoftSubSurfacePairScore___repr__(self)
10056 
10057 
10058  @staticmethod
10059  def get_from(o):
10060  return _object_cast_to_SoftSubSurfacePairScore(o)
10061 
10062 SoftSubSurfacePairScore_swigregister = _IMP_core.SoftSubSurfacePairScore_swigregister
10063 SoftSubSurfacePairScore_swigregister(SoftSubSurfacePairScore)
10064 
10065 class SurfaceTetheredChain(IMP.UnaryFunction):
10066  """Proxy of C++ IMP::core::SurfaceTetheredChain class."""
10067 
10068  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
10069 
10070  def __init__(self, link_num, link_length):
10071  """__init__(IMP::core::SurfaceTetheredChain self, int link_num, double link_length) -> SurfaceTetheredChain"""
10072  this = _IMP_core.new_SurfaceTetheredChain(link_num, link_length)
10073  try:
10074  self.this.append(this)
10075  except __builtin__.Exception:
10076  self.this = this
10077 
10078  def get_version_info(self):
10079  """get_version_info(SurfaceTetheredChain self) -> VersionInfo"""
10080  return _IMP_core.SurfaceTetheredChain_get_version_info(self)
10081 
10082 
10083  def get_link_number(self):
10084  """get_link_number(SurfaceTetheredChain self) -> int"""
10085  return _IMP_core.SurfaceTetheredChain_get_link_number(self)
10086 
10087 
10088  def get_link_length(self):
10089  """get_link_length(SurfaceTetheredChain self) -> double"""
10090  return _IMP_core.SurfaceTetheredChain_get_link_length(self)
10091 
10092 
10093  def set_link_number(self, N):
10094  """set_link_number(SurfaceTetheredChain self, int N)"""
10095  return _IMP_core.SurfaceTetheredChain_set_link_number(self, N)
10096 
10097 
10098  def set_link_length(self, b):
10099  """set_link_length(SurfaceTetheredChain self, double b)"""
10100  return _IMP_core.SurfaceTetheredChain_set_link_length(self, b)
10101 
10102 
10103  def get_distance_at_minimum(self):
10104  """get_distance_at_minimum(SurfaceTetheredChain self) -> double"""
10105  return _IMP_core.SurfaceTetheredChain_get_distance_at_minimum(self)
10106 
10107 
10108  def get_average_distance(self):
10109  """get_average_distance(SurfaceTetheredChain self) -> double"""
10110  return _IMP_core.SurfaceTetheredChain_get_average_distance(self)
10111 
10112 
10113  def __str__(self):
10114  """__str__(SurfaceTetheredChain self) -> std::string"""
10115  return _IMP_core.SurfaceTetheredChain___str__(self)
10116 
10117 
10118  def __repr__(self):
10119  """__repr__(SurfaceTetheredChain self) -> std::string"""
10120  return _IMP_core.SurfaceTetheredChain___repr__(self)
10121 
10122 
10123  @staticmethod
10124  def get_from(o):
10125  return _object_cast_to_SurfaceTetheredChain(o)
10126 
10127 SurfaceTetheredChain_swigregister = _IMP_core.SurfaceTetheredChain_swigregister
10128 SurfaceTetheredChain_swigregister(SurfaceTetheredChain)
10129 
10130 class SurfaceSymmetryConstraint(IMP.Constraint):
10131  """Proxy of C++ IMP::core::SurfaceSymmetryConstraint class."""
10132 
10133  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
10134 
10135  def __init__(self, m, ss, rbs):
10136  """__init__(IMP::core::SurfaceSymmetryConstraint self, Model m, IMP::ParticleIndexPair const & ss, IMP::ParticleIndexPair const & rbs) -> SurfaceSymmetryConstraint"""
10137  this = _IMP_core.new_SurfaceSymmetryConstraint(m, ss, rbs)
10138  try:
10139  self.this.append(this)
10140  except __builtin__.Exception:
10141  self.this = this
10142 
10143  def do_get_inputs(self):
10144  """do_get_inputs(SurfaceSymmetryConstraint self) -> IMP::ModelObjectsTemp"""
10145  return _IMP_core.SurfaceSymmetryConstraint_do_get_inputs(self)
10146 
10147 
10148  def do_get_outputs(self):
10149  """do_get_outputs(SurfaceSymmetryConstraint self) -> IMP::ModelObjectsTemp"""
10150  return _IMP_core.SurfaceSymmetryConstraint_do_get_outputs(self)
10151 
10152 
10153  def get_version_info(self):
10154  """get_version_info(SurfaceSymmetryConstraint self) -> VersionInfo"""
10155  return _IMP_core.SurfaceSymmetryConstraint_get_version_info(self)
10156 
10157 
10158  def __str__(self):
10159  """__str__(SurfaceSymmetryConstraint self) -> std::string"""
10160  return _IMP_core.SurfaceSymmetryConstraint___str__(self)
10161 
10162 
10163  def __repr__(self):
10164  """__repr__(SurfaceSymmetryConstraint self) -> std::string"""
10165  return _IMP_core.SurfaceSymmetryConstraint___repr__(self)
10166 
10167 
10168  @staticmethod
10169  def get_from(o):
10170  return _object_cast_to_SurfaceSymmetryConstraint(o)
10171 
10172 SurfaceSymmetryConstraint_swigregister = _IMP_core.SurfaceSymmetryConstraint_swigregister
10173 SurfaceSymmetryConstraint_swigregister(SurfaceSymmetryConstraint)
10174 
10175 class SteepestDescent(IMP.AttributeOptimizer):
10176  """Proxy of C++ IMP::core::SteepestDescent class."""
10177 
10178  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
10179 
10180  def __init__(self, *args):
10181  """
10182  __init__(IMP::core::SteepestDescent self, Model m, std::string name) -> SteepestDescent
10183  __init__(IMP::core::SteepestDescent self, Model m) -> SteepestDescent
10184  """
10185  this = _IMP_core.new_SteepestDescent(*args)
10186  try:
10187  self.this.append(this)
10188  except __builtin__.Exception:
10189  self.this = this
10190 
10191  def do_optimize(self, max_steps):
10192  """do_optimize(SteepestDescent self, unsigned int max_steps) -> IMP::Float"""
10193  return _IMP_core.SteepestDescent_do_optimize(self, max_steps)
10194 
10195 
10196  def get_version_info(self):
10197  """get_version_info(SteepestDescent self) -> VersionInfo"""
10198  return _IMP_core.SteepestDescent_get_version_info(self)
10199 
10200 
10201  def set_threshold(self, t):
10202  """set_threshold(SteepestDescent self, IMP::Float t)"""
10203  return _IMP_core.SteepestDescent_set_threshold(self, t)
10204 
10205 
10206  def set_step_size(self, t):
10207  """set_step_size(SteepestDescent self, IMP::Float t)"""
10208  return _IMP_core.SteepestDescent_set_step_size(self, t)
10209 
10210 
10211  def set_maximum_step_size(self, t):
10212  """set_maximum_step_size(SteepestDescent self, IMP::Float t)"""
10213  return _IMP_core.SteepestDescent_set_maximum_step_size(self, t)
10214 
10215 
10216  def __str__(self):
10217  """__str__(SteepestDescent self) -> std::string"""
10218  return _IMP_core.SteepestDescent___str__(self)
10219 
10220 
10221  def __repr__(self):
10222  """__repr__(SteepestDescent self) -> std::string"""
10223  return _IMP_core.SteepestDescent___repr__(self)
10224 
10225 
10226  @staticmethod
10227  def get_from(o):
10228  return _object_cast_to_SteepestDescent(o)
10229 
10230 SteepestDescent_swigregister = _IMP_core.SteepestDescent_swigregister
10231 SteepestDescent_swigregister(SteepestDescent)
10232 
10233 class TransformedDistancePairScore(IMP.PairScore):
10234  """Proxy of C++ IMP::core::TransformedDistancePairScore class."""
10235 
10236  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
10237 
10238  def __init__(self, f, transformation):
10239  """__init__(IMP::core::TransformedDistancePairScore self, UnaryFunction f, Transformation3D transformation) -> TransformedDistancePairScore"""
10240  this = _IMP_core.new_TransformedDistancePairScore(f, transformation)
10241  try:
10242  self.this.append(this)
10243  except __builtin__.Exception:
10244  self.this = this
10245 
10246  def set_transformation(self, rot):
10247  """set_transformation(TransformedDistancePairScore self, Transformation3D rot)"""
10248  return _IMP_core.TransformedDistancePairScore_set_transformation(self, rot)
10249 
10250 
10251  def do_get_inputs(self, m, pis):
10252  """do_get_inputs(TransformedDistancePairScore self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
10253  return _IMP_core.TransformedDistancePairScore_do_get_inputs(self, m, pis)
10254 
10255 
10256  def get_version_info(self):
10257  """get_version_info(TransformedDistancePairScore self) -> VersionInfo"""
10258  return _IMP_core.TransformedDistancePairScore_get_version_info(self)
10259 
10260 
10261  def __str__(self):
10262  """__str__(TransformedDistancePairScore self) -> std::string"""
10263  return _IMP_core.TransformedDistancePairScore___str__(self)
10264 
10265 
10266  def __repr__(self):
10267  """__repr__(TransformedDistancePairScore self) -> std::string"""
10268  return _IMP_core.TransformedDistancePairScore___repr__(self)
10269 
10270 
10271  @staticmethod
10272  def get_from(o):
10273  return _object_cast_to_TransformedDistancePairScore(o)
10274 
10275 TransformedDistancePairScore_swigregister = _IMP_core.TransformedDistancePairScore_swigregister
10276 TransformedDistancePairScore_swigregister(TransformedDistancePairScore)
10277 
10278 class TypedPairScore(IMP.PairScore):
10279  """Proxy of C++ IMP::core::TypedPairScore class."""
10280 
10281  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
10282 
10283  def __init__(self, typekey, allow_invalid_types=True):
10284  """
10285  __init__(IMP::core::TypedPairScore self, IntKey typekey, bool allow_invalid_types=True) -> TypedPairScore
10286  __init__(IMP::core::TypedPairScore self, IntKey typekey) -> TypedPairScore
10287  """
10288  this = _IMP_core.new_TypedPairScore(typekey, allow_invalid_types)
10289  try:
10290  self.this.append(this)
10291  except __builtin__.Exception:
10292  self.this = this
10293 
10294  def set_particle_type(self, arg2):
10295  """set_particle_type(TypedPairScore self, Particle arg2)"""
10296  return _IMP_core.TypedPairScore_set_particle_type(self, arg2)
10297 
10298 
10299  def set_pair_score(self, ps, atype, btype):
10300  """set_pair_score(TypedPairScore self, PairScore ps, IMP::Int atype, IMP::Int btype)"""
10301  return _IMP_core.TypedPairScore_set_pair_score(self, ps, atype, btype)
10302 
10303 
10304  def do_get_inputs(self, m, pis):
10305  """do_get_inputs(TypedPairScore self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
10306  return _IMP_core.TypedPairScore_do_get_inputs(self, m, pis)
10307 
10308 
10309  def get_version_info(self):
10310  """get_version_info(TypedPairScore self) -> VersionInfo"""
10311  return _IMP_core.TypedPairScore_get_version_info(self)
10312 
10313 
10314  def __str__(self):
10315  """__str__(TypedPairScore self) -> std::string"""
10316  return _IMP_core.TypedPairScore___str__(self)
10317 
10318 
10319  def __repr__(self):
10320  """__repr__(TypedPairScore self) -> std::string"""
10321  return _IMP_core.TypedPairScore___repr__(self)
10322 
10323 
10324  @staticmethod
10325  def get_from(o):
10326  return _object_cast_to_TypedPairScore(o)
10327 
10328 TypedPairScore_swigregister = _IMP_core.TypedPairScore_swigregister
10329 TypedPairScore_swigregister(TypedPairScore)
10330 
10331 class RigidBodyDistancePairScore(KClosePairsPairScore):
10332  """Proxy of C++ IMP::core::RigidBodyDistancePairScore class."""
10333 
10334  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
10335 
10336  def __init__(self, ps, r):
10337  """__init__(IMP::core::RigidBodyDistancePairScore self, PairScore ps, Refiner r) -> RigidBodyDistancePairScore"""
10338  this = _IMP_core.new_RigidBodyDistancePairScore(ps, r)
10339  try:
10340  self.this.append(this)
10341  except __builtin__.Exception:
10342  self.this = this
10343 
10344  def __str__(self):
10345  """__str__(RigidBodyDistancePairScore self) -> std::string"""
10346  return _IMP_core.RigidBodyDistancePairScore___str__(self)
10347 
10348 
10349  def __repr__(self):
10350  """__repr__(RigidBodyDistancePairScore self) -> std::string"""
10351  return _IMP_core.RigidBodyDistancePairScore___repr__(self)
10352 
10353 
10354  @staticmethod
10355  def get_from(o):
10356  return _object_cast_to_RigidBodyDistancePairScore(o)
10357 
10358  __swig_destroy__ = _IMP_core.delete_RigidBodyDistancePairScore
10359  __del__ = lambda self: None
10360 RigidBodyDistancePairScore_swigregister = _IMP_core.RigidBodyDistancePairScore_swigregister
10361 RigidBodyDistancePairScore_swigregister(RigidBodyDistancePairScore)
10362 
10363 class RigidBodyAnglePairScore(IMP.PairScore):
10364  """Proxy of C++ IMP::core::RigidBodyAnglePairScore class."""
10365 
10366  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
10367 
10368  def __init__(self, f):
10369  """__init__(IMP::core::RigidBodyAnglePairScore self, UnaryFunction f) -> RigidBodyAnglePairScore"""
10370  this = _IMP_core.new_RigidBodyAnglePairScore(f)
10371  try:
10372  self.this.append(this)
10373  except __builtin__.Exception:
10374  self.this = this
10375 
10376  def do_get_inputs(self, m, pis):
10377  """do_get_inputs(RigidBodyAnglePairScore self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
10378  return _IMP_core.RigidBodyAnglePairScore_do_get_inputs(self, m, pis)
10379 
10380 
10381  def get_version_info(self):
10382  """get_version_info(RigidBodyAnglePairScore self) -> VersionInfo"""
10383  return _IMP_core.RigidBodyAnglePairScore_get_version_info(self)
10384 
10385 
10386  def __str__(self):
10387  """__str__(RigidBodyAnglePairScore self) -> std::string"""
10388  return _IMP_core.RigidBodyAnglePairScore___str__(self)
10389 
10390 
10391  def __repr__(self):
10392  """__repr__(RigidBodyAnglePairScore self) -> std::string"""
10393  return _IMP_core.RigidBodyAnglePairScore___repr__(self)
10394 
10395 
10396  @staticmethod
10397  def get_from(o):
10398  return _object_cast_to_RigidBodyAnglePairScore(o)
10399 
10400 RigidBodyAnglePairScore_swigregister = _IMP_core.RigidBodyAnglePairScore_swigregister
10401 RigidBodyAnglePairScore_swigregister(RigidBodyAnglePairScore)
10402 
10403 class TableRefiner(IMP.Refiner):
10404  """Proxy of C++ IMP::core::TableRefiner class."""
10405 
10406  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
10407 
10408  def __init__(self):
10409  """__init__(IMP::core::TableRefiner self) -> TableRefiner"""
10410  this = _IMP_core.new_TableRefiner()
10411  try:
10412  self.this.append(this)
10413  except __builtin__.Exception:
10414  self.this = this
10415 
10416  def add_particle(self, p, ps):
10417  """add_particle(TableRefiner self, Particle p, IMP::ParticlesTemp const & ps)"""
10418  return _IMP_core.TableRefiner_add_particle(self, p, ps)
10419 
10420 
10421  def remove_particle(self, p):
10422  """remove_particle(TableRefiner self, Particle p)"""
10423  return _IMP_core.TableRefiner_remove_particle(self, p)
10424 
10425 
10426  def set_particle(self, p, ps):
10427  """set_particle(TableRefiner self, Particle p, IMP::ParticlesTemp const & ps)"""
10428  return _IMP_core.TableRefiner_set_particle(self, p, ps)
10429 
10430 
10431  def do_get_inputs(self, m, pis):
10432  """do_get_inputs(TableRefiner self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
10433  return _IMP_core.TableRefiner_do_get_inputs(self, m, pis)
10434 
10435 
10436  def get_version_info(self):
10437  """get_version_info(TableRefiner self) -> VersionInfo"""
10438  return _IMP_core.TableRefiner_get_version_info(self)
10439 
10440 
10441  def __str__(self):
10442  """__str__(TableRefiner self) -> std::string"""
10443  return _IMP_core.TableRefiner___str__(self)
10444 
10445 
10446  def __repr__(self):
10447  """__repr__(TableRefiner self) -> std::string"""
10448  return _IMP_core.TableRefiner___repr__(self)
10449 
10450 
10451  @staticmethod
10452  def get_from(o):
10453  return _object_cast_to_TableRefiner(o)
10454 
10455 TableRefiner_swigregister = _IMP_core.TableRefiner_swigregister
10456 TableRefiner_swigregister(TableRefiner)
10457 
10458 LOWER = _IMP_core.LOWER
10459 BOTH = _IMP_core.BOTH
10460 UPPER = _IMP_core.UPPER
10461 class MCCGSampler(IMP.Sampler):
10462  """Proxy of C++ IMP::core::MCCGSampler class."""
10463 
10464  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
10465 
10466  def __init__(self, *args):
10467  """
10468  __init__(IMP::core::MCCGSampler self, Model m, std::string name) -> MCCGSampler
10469  __init__(IMP::core::MCCGSampler self, Model m) -> MCCGSampler
10470  """
10471  this = _IMP_core.new_MCCGSampler(*args)
10472  try:
10473  self.this.append(this)
10474  except __builtin__.Exception:
10475  self.this = this
10476 
10477  def set_bounding_box(self, bb):
10478  """set_bounding_box(MCCGSampler self, BoundingBox3D bb)"""
10479  return _IMP_core.MCCGSampler_set_bounding_box(self, bb)
10480 
10481 
10482  def set_number_of_attempts(self, att):
10483  """set_number_of_attempts(MCCGSampler self, unsigned int att)"""
10484  return _IMP_core.MCCGSampler_set_number_of_attempts(self, att)
10485 
10486 
10487  def set_number_of_monte_carlo_steps(self, cg):
10488  """set_number_of_monte_carlo_steps(MCCGSampler self, unsigned int cg)"""
10489  return _IMP_core.MCCGSampler_set_number_of_monte_carlo_steps(self, cg)
10490 
10491 
10492  def set_number_of_conjugate_gradient_steps(self, cg):
10493  """set_number_of_conjugate_gradient_steps(MCCGSampler self, unsigned int cg)"""
10494  return _IMP_core.MCCGSampler_set_number_of_conjugate_gradient_steps(self, cg)
10495 
10496 
10497  def set_max_monte_carlo_step_size(self, *args):
10498  """
10499  set_max_monte_carlo_step_size(MCCGSampler self, double d)
10500  set_max_monte_carlo_step_size(MCCGSampler self, FloatKey k, double d)
10501  """
10502  return _IMP_core.MCCGSampler_set_max_monte_carlo_step_size(self, *args)
10503 
10504 
10505  def set_is_refining(self, tf):
10506  """set_is_refining(MCCGSampler self, bool tf)"""
10507  return _IMP_core.MCCGSampler_set_is_refining(self, tf)
10508 
10509 
10510  def set_local_optimizer(self, opt):
10511  """set_local_optimizer(MCCGSampler self, Optimizer opt)"""
10512  return _IMP_core.MCCGSampler_set_local_optimizer(self, opt)
10513 
10514 
10515  def set_save_rejected_configurations(self, tf):
10516  """set_save_rejected_configurations(MCCGSampler self, bool tf)"""
10517  return _IMP_core.MCCGSampler_set_save_rejected_configurations(self, tf)
10518 
10519 
10520  def get_rejected_configurations(self):
10521  """get_rejected_configurations(MCCGSampler self) -> ConfigurationSet"""
10522  return _IMP_core.MCCGSampler_get_rejected_configurations(self)
10523 
10524 
10525  def remove_optimizer_state(self, d):
10526  """remove_optimizer_state(MCCGSampler self, OptimizerState d)"""
10527  return _IMP_core.MCCGSampler_remove_optimizer_state(self, d)
10528 
10529 
10530  def remove_optimizer_states(self, d):
10531  """remove_optimizer_states(MCCGSampler self, IMP::OptimizerStates const & d)"""
10532  return _IMP_core.MCCGSampler_remove_optimizer_states(self, d)
10533 
10534 
10535  def set_optimizer_states(self, ps):
10536  """set_optimizer_states(MCCGSampler self, IMP::OptimizerStates const & ps)"""
10537  return _IMP_core.MCCGSampler_set_optimizer_states(self, ps)
10538 
10539 
10540  def set_optimizer_states_order(self, objs):
10541  """set_optimizer_states_order(MCCGSampler self, IMP::OptimizerStates const & objs)"""
10542  return _IMP_core.MCCGSampler_set_optimizer_states_order(self, objs)
10543 
10544 
10545  def add_optimizer_state(self, obj):
10546  """add_optimizer_state(MCCGSampler self, OptimizerState obj) -> unsigned int"""
10547  return _IMP_core.MCCGSampler_add_optimizer_state(self, obj)
10548 
10549 
10550  def add_optimizer_states(self, objs):
10551  """add_optimizer_states(MCCGSampler self, IMP::OptimizerStates const & objs)"""
10552  return _IMP_core.MCCGSampler_add_optimizer_states(self, objs)
10553 
10554 
10555  def clear_optimizer_states(self):
10556  """clear_optimizer_states(MCCGSampler self)"""
10557  return _IMP_core.MCCGSampler_clear_optimizer_states(self)
10558 
10559 
10560  def get_number_of_optimizer_states(self):
10561  """get_number_of_optimizer_states(MCCGSampler self) -> unsigned int"""
10562  return _IMP_core.MCCGSampler_get_number_of_optimizer_states(self)
10563 
10564 
10565  def get_has_optimizer_states(self):
10566  """get_has_optimizer_states(MCCGSampler self) -> bool"""
10567  return _IMP_core.MCCGSampler_get_has_optimizer_states(self)
10568 
10569 
10570  def get_optimizer_state(self, i):
10571  """get_optimizer_state(MCCGSampler self, unsigned int i) -> OptimizerState"""
10572  return _IMP_core.MCCGSampler_get_optimizer_state(self, i)
10573 
10574 
10575  def get_optimizer_states(self):
10576  """get_optimizer_states(MCCGSampler self) -> IMP::OptimizerStates"""
10577  return _IMP_core.MCCGSampler_get_optimizer_states(self)
10578 
10579 
10580  def reserve_optimizer_states(self, sz):
10581  """reserve_optimizer_states(MCCGSampler self, unsigned int sz)"""
10582  return _IMP_core.MCCGSampler_reserve_optimizer_states(self, sz)
10583 
10584 
10585  def do_sample(self):
10586  """do_sample(MCCGSampler self) -> ConfigurationSet"""
10587  return _IMP_core.MCCGSampler_do_sample(self)
10588 
10589 
10590  def get_version_info(self):
10591  """get_version_info(MCCGSampler self) -> VersionInfo"""
10592  return _IMP_core.MCCGSampler_get_version_info(self)
10593 
10594 
10595  def __str__(self):
10596  """__str__(MCCGSampler self) -> std::string"""
10597  return _IMP_core.MCCGSampler___str__(self)
10598 
10599 
10600  def __repr__(self):
10601  """__repr__(MCCGSampler self) -> std::string"""
10602  return _IMP_core.MCCGSampler___repr__(self)
10603 
10604 
10605  @staticmethod
10606  def get_from(o):
10607  return _object_cast_to_MCCGSampler(o)
10608 
10609 MCCGSampler_swigregister = _IMP_core.MCCGSampler_swigregister
10610 MCCGSampler_swigregister(MCCGSampler)
10611 
10612 class MinimumRestraint(IMP.Restraint):
10613  """Proxy of C++ IMP::core::MinimumRestraint class."""
10614 
10615  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
10616 
10617  def __init__(self, *args):
10618  """
10619  __init__(IMP::core::MinimumRestraint self, unsigned int num, IMP::Restraints const & rs, std::string name) -> MinimumRestraint
10620  __init__(IMP::core::MinimumRestraint self, unsigned int num, IMP::Restraints const & rs) -> MinimumRestraint
10621  __init__(IMP::core::MinimumRestraint self, unsigned int num) -> MinimumRestraint
10622  """
10623  this = _IMP_core.new_MinimumRestraint(*args)
10624  try:
10625  self.this.append(this)
10626  except __builtin__.Exception:
10627  self.this = this
10628 
10629  def do_get_inputs(self):
10630  """do_get_inputs(MinimumRestraint self) -> IMP::ModelObjectsTemp"""
10631  return _IMP_core.MinimumRestraint_do_get_inputs(self)
10632 
10633 
10634  def get_version_info(self):
10635  """get_version_info(MinimumRestraint self) -> VersionInfo"""
10636  return _IMP_core.MinimumRestraint_get_version_info(self)
10637 
10638 
10639  def remove_restraint(self, d):
10640  """remove_restraint(MinimumRestraint self, Restraint d)"""
10641  return _IMP_core.MinimumRestraint_remove_restraint(self, d)
10642 
10643 
10644  def remove_restraints(self, d):
10645  """remove_restraints(MinimumRestraint self, IMP::Restraints const & d)"""
10646  return _IMP_core.MinimumRestraint_remove_restraints(self, d)
10647 
10648 
10649  def set_restraints(self, ps):
10650  """set_restraints(MinimumRestraint self, IMP::Restraints const & ps)"""
10651  return _IMP_core.MinimumRestraint_set_restraints(self, ps)
10652 
10653 
10654  def set_restraints_order(self, objs):
10655  """set_restraints_order(MinimumRestraint self, IMP::Restraints const & objs)"""
10656  return _IMP_core.MinimumRestraint_set_restraints_order(self, objs)
10657 
10658 
10659  def add_restraint(self, obj):
10660  """add_restraint(MinimumRestraint self, Restraint obj) -> unsigned int"""
10661  return _IMP_core.MinimumRestraint_add_restraint(self, obj)
10662 
10663 
10664  def add_restraints(self, objs):
10665  """add_restraints(MinimumRestraint self, IMP::Restraints const & objs)"""
10666  return _IMP_core.MinimumRestraint_add_restraints(self, objs)
10667 
10668 
10669  def clear_restraints(self):
10670  """clear_restraints(MinimumRestraint self)"""
10671  return _IMP_core.MinimumRestraint_clear_restraints(self)
10672 
10673 
10674  def get_number_of_restraints(self):
10675  """get_number_of_restraints(MinimumRestraint self) -> unsigned int"""
10676  return _IMP_core.MinimumRestraint_get_number_of_restraints(self)
10677 
10678 
10679  def get_has_restraints(self):
10680  """get_has_restraints(MinimumRestraint self) -> bool"""
10681  return _IMP_core.MinimumRestraint_get_has_restraints(self)
10682 
10683 
10684  def get_restraint(self, i):
10685  """get_restraint(MinimumRestraint self, unsigned int i) -> Restraint"""
10686  return _IMP_core.MinimumRestraint_get_restraint(self, i)
10687 
10688 
10689  def get_restraints(self):
10690  """get_restraints(MinimumRestraint self) -> IMP::Restraints"""
10691  return _IMP_core.MinimumRestraint_get_restraints(self)
10692 
10693 
10694  def reserve_restraints(self, sz):
10695  """reserve_restraints(MinimumRestraint self, unsigned int sz)"""
10696  return _IMP_core.MinimumRestraint_reserve_restraints(self, sz)
10697 
10698 
10699  def __str__(self):
10700  """__str__(MinimumRestraint self) -> std::string"""
10701  return _IMP_core.MinimumRestraint___str__(self)
10702 
10703 
10704  def __repr__(self):
10705  """__repr__(MinimumRestraint self) -> std::string"""
10706  return _IMP_core.MinimumRestraint___repr__(self)
10707 
10708 
10709  @staticmethod
10710  def get_from(o):
10711  return _object_cast_to_MinimumRestraint(o)
10712 
10713 MinimumRestraint_swigregister = _IMP_core.MinimumRestraint_swigregister
10714 MinimumRestraint_swigregister(MinimumRestraint)
10715 
10716 class Gaussian(RigidBody):
10717  """Proxy of C++ IMP::core::Gaussian class."""
10718 
10719  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
10720 
10721  def __init__(self, *args):
10722  """
10723  __init__(IMP::core::Gaussian self) -> Gaussian
10724  __init__(IMP::core::Gaussian self, Model m, ParticleIndex id) -> Gaussian
10725  __init__(IMP::core::Gaussian self, _ParticleAdaptor d) -> Gaussian
10726  """
10727  this = _IMP_core.new_Gaussian(*args)
10728  try:
10729  self.this.append(this)
10730  except __builtin__.Exception:
10731  self.this = this
10732 
10733  def show(self, *args):
10734  """
10735  show(Gaussian self, _ostream out)
10736  show(Gaussian self)
10737  """
10738  return _IMP_core.Gaussian_show(self, *args)
10739 
10740 
10741  def setup_particle(*args):
10742  """
10743  setup_particle(Model m, ParticleIndex pi) -> Gaussian
10744  setup_particle(_ParticleAdaptor decorator) -> Gaussian
10745  setup_particle(Model m, ParticleIndex pi, Gaussian3D g) -> Gaussian
10746  setup_particle(_ParticleAdaptor decorator, Gaussian3D g) -> Gaussian
10747  """
10748  return _IMP_core.Gaussian_setup_particle(*args)
10749 
10750  setup_particle = staticmethod(setup_particle)
10751 
10752  def get_local_covariance_key():
10753  """get_local_covariance_key() -> ObjectKey"""
10754  return _IMP_core.Gaussian_get_local_covariance_key()
10755 
10756  get_local_covariance_key = staticmethod(get_local_covariance_key)
10757 
10758  def get_global_covariance_key():
10759  """get_global_covariance_key() -> ObjectKey"""
10760  return _IMP_core.Gaussian_get_global_covariance_key()
10761 
10762  get_global_covariance_key = staticmethod(get_global_covariance_key)
10763 
10764  def get_is_setup(*args):
10765  """
10766  get_is_setup(_ParticleAdaptor p) -> bool
10767  get_is_setup(Model m, ParticleIndex pi) -> bool
10768  """
10769  return _IMP_core.Gaussian_get_is_setup(*args)
10770 
10771  get_is_setup = staticmethod(get_is_setup)
10772 
10773  def get_local_covariance(self):
10774  """get_local_covariance(Gaussian self) -> Eigen::Matrix3d"""
10775  return _IMP_core.Gaussian_get_local_covariance(self)
10776 
10777 
10778  def get_variances(self):
10779  """get_variances(Gaussian self) -> Vector3D"""
10780  return _IMP_core.Gaussian_get_variances(self)
10781 
10782 
10783  def get_global_covariance(self):
10784  """get_global_covariance(Gaussian self) -> Eigen::Matrix3d"""
10785  return _IMP_core.Gaussian_get_global_covariance(self)
10786 
10787 
10788  def get_gaussian(self):
10789  """get_gaussian(Gaussian self) -> Gaussian3D"""
10790  return _IMP_core.Gaussian_get_gaussian(self)
10791 
10792 
10793  def set_gaussian(self, g):
10794  """set_gaussian(Gaussian self, Gaussian3D g)"""
10795  return _IMP_core.Gaussian_set_gaussian(self, g)
10796 
10797 
10798  def set_local_covariance(self, covar):
10799  """set_local_covariance(Gaussian self, Eigen::Vector3d const covar)"""
10800  return _IMP_core.Gaussian_set_local_covariance(self, covar)
10801 
10802 
10803  def set_variances(self, v):
10804  """set_variances(Gaussian self, Vector3D v)"""
10805  return _IMP_core.Gaussian_set_variances(self, v)
10806 
10807 
10808  def set_global_covariance(self, covar):
10809  """set_global_covariance(Gaussian self, Eigen::Matrix3d covar)"""
10810  return _IMP_core.Gaussian_set_global_covariance(self, covar)
10811 
10812 
10813  def update_global_covariance(self):
10814  """update_global_covariance(Gaussian self)"""
10815  return _IMP_core.Gaussian_update_global_covariance(self)
10816 
10817 
10818  def add_attribute(self, *args):
10819  """
10820  add_attribute(Gaussian self, FloatKey k, IMP::Float v, bool opt)
10821  add_attribute(Gaussian self, FloatKey a0, IMP::Float a1)
10822  add_attribute(Gaussian self, IntKey a0, IMP::Int a1)
10823  add_attribute(Gaussian self, StringKey a0, IMP::String a1)
10824  add_attribute(Gaussian self, ParticleIndexKey a0, Particle a1)
10825  add_attribute(Gaussian self, ObjectKey a0, Object a1)
10826  """
10827  return _IMP_core.Gaussian_add_attribute(self, *args)
10828 
10829 
10830  def get_value(self, *args):
10831  """
10832  get_value(Gaussian self, FloatKey a0) -> IMP::Float
10833  get_value(Gaussian self, IntKey a0) -> IMP::Int
10834  get_value(Gaussian self, StringKey a0) -> IMP::String
10835  get_value(Gaussian self, ParticleIndexKey a0) -> Particle
10836  get_value(Gaussian self, ObjectKey a0) -> Object
10837  """
10838  return _IMP_core.Gaussian_get_value(self, *args)
10839 
10840 
10841  def set_value(self, *args):
10842  """
10843  set_value(Gaussian self, FloatKey a0, IMP::Float a1)
10844  set_value(Gaussian self, IntKey a0, IMP::Int a1)
10845  set_value(Gaussian self, StringKey a0, IMP::String a1)
10846  set_value(Gaussian self, ParticleIndexKey a0, Particle a1)
10847  set_value(Gaussian self, ObjectKey a0, Object a1)
10848  """
10849  return _IMP_core.Gaussian_set_value(self, *args)
10850 
10851 
10852  def remove_attribute(self, *args):
10853  """
10854  remove_attribute(Gaussian self, FloatKey a0)
10855  remove_attribute(Gaussian self, IntKey a0)
10856  remove_attribute(Gaussian self, StringKey a0)
10857  remove_attribute(Gaussian self, ParticleIndexKey a0)
10858  remove_attribute(Gaussian self, ObjectKey a0)
10859  """
10860  return _IMP_core.Gaussian_remove_attribute(self, *args)
10861 
10862 
10863  def has_attribute(self, *args):
10864  """
10865  has_attribute(Gaussian self, FloatKey a0) -> bool
10866  has_attribute(Gaussian self, IntKey a0) -> bool
10867  has_attribute(Gaussian self, StringKey a0) -> bool
10868  has_attribute(Gaussian self, ParticleIndexKey a0) -> bool
10869  has_attribute(Gaussian self, ObjectKey a0) -> bool
10870  """
10871  return _IMP_core.Gaussian_has_attribute(self, *args)
10872 
10873 
10874  def get_derivative(self, a0):
10875  """get_derivative(Gaussian self, FloatKey a0) -> double"""
10876  return _IMP_core.Gaussian_get_derivative(self, a0)
10877 
10878 
10879  def get_name(self):
10880  """get_name(Gaussian self) -> std::string"""
10881  return _IMP_core.Gaussian_get_name(self)
10882 
10883 
10884  def clear_caches(self):
10885  """clear_caches(Gaussian self)"""
10886  return _IMP_core.Gaussian_clear_caches(self)
10887 
10888 
10889  def set_name(self, a0):
10890  """set_name(Gaussian self, std::string a0)"""
10891  return _IMP_core.Gaussian_set_name(self, a0)
10892 
10893 
10894  def set_check_level(self, a0):
10895  """set_check_level(Gaussian self, IMP::CheckLevel a0)"""
10896  return _IMP_core.Gaussian_set_check_level(self, a0)
10897 
10898 
10899  def add_to_derivative(self, a0, a1, a2):
10900  """add_to_derivative(Gaussian self, FloatKey a0, double a1, DerivativeAccumulator a2)"""
10901  return _IMP_core.Gaussian_add_to_derivative(self, a0, a1, a2)
10902 
10903 
10904  def set_is_optimized(self, a0, a1):
10905  """set_is_optimized(Gaussian self, FloatKey a0, bool a1)"""
10906  return _IMP_core.Gaussian_set_is_optimized(self, a0, a1)
10907 
10908 
10909  def get_is_optimized(self, a0):
10910  """get_is_optimized(Gaussian self, FloatKey a0) -> bool"""
10911  return _IMP_core.Gaussian_get_is_optimized(self, a0)
10912 
10913 
10914  def get_check_level(self):
10915  """get_check_level(Gaussian self) -> IMP::CheckLevel"""
10916  return _IMP_core.Gaussian_get_check_level(self)
10917 
10918 
10919  def __eq__(self, *args):
10920  """
10921  __eq__(Gaussian self, Gaussian o) -> bool
10922  __eq__(Gaussian self, Particle d) -> bool
10923  """
10924  return _IMP_core.Gaussian___eq__(self, *args)
10925 
10926 
10927  def __ne__(self, *args):
10928  """
10929  __ne__(Gaussian self, Gaussian o) -> bool
10930  __ne__(Gaussian self, Particle d) -> bool
10931  """
10932  return _IMP_core.Gaussian___ne__(self, *args)
10933 
10934 
10935  def __le__(self, *args):
10936  """
10937  __le__(Gaussian self, Gaussian o) -> bool
10938  __le__(Gaussian self, Particle d) -> bool
10939  """
10940  return _IMP_core.Gaussian___le__(self, *args)
10941 
10942 
10943  def __lt__(self, *args):
10944  """
10945  __lt__(Gaussian self, Gaussian o) -> bool
10946  __lt__(Gaussian self, Particle d) -> bool
10947  """
10948  return _IMP_core.Gaussian___lt__(self, *args)
10949 
10950 
10951  def __ge__(self, *args):
10952  """
10953  __ge__(Gaussian self, Gaussian o) -> bool
10954  __ge__(Gaussian self, Particle d) -> bool
10955  """
10956  return _IMP_core.Gaussian___ge__(self, *args)
10957 
10958 
10959  def __gt__(self, *args):
10960  """
10961  __gt__(Gaussian self, Gaussian o) -> bool
10962  __gt__(Gaussian self, Particle d) -> bool
10963  """
10964  return _IMP_core.Gaussian___gt__(self, *args)
10965 
10966 
10967  def __hash__(self):
10968  """__hash__(Gaussian self) -> std::size_t"""
10969  return _IMP_core.Gaussian___hash__(self)
10970 
10971 
10972  def __str__(self):
10973  """__str__(Gaussian self) -> std::string"""
10974  return _IMP_core.Gaussian___str__(self)
10975 
10976 
10977  def __repr__(self):
10978  """__repr__(Gaussian self) -> std::string"""
10979  return _IMP_core.Gaussian___repr__(self)
10980 
10981  __swig_destroy__ = _IMP_core.delete_Gaussian
10982  __del__ = lambda self: None
10983 Gaussian_swigregister = _IMP_core.Gaussian_swigregister
10984 Gaussian_swigregister(Gaussian)
10985 
10986 def Gaussian_setup_particle(*args):
10987  """
10988  setup_particle(Model m, ParticleIndex pi) -> Gaussian
10989  setup_particle(_ParticleAdaptor decorator) -> Gaussian
10990  setup_particle(Model m, ParticleIndex pi, Gaussian3D g) -> Gaussian
10991  Gaussian_setup_particle(_ParticleAdaptor decorator, Gaussian3D g) -> Gaussian
10992  """
10993  return _IMP_core.Gaussian_setup_particle(*args)
10994 
10995 def Gaussian_get_local_covariance_key():
10996  """Gaussian_get_local_covariance_key() -> ObjectKey"""
10997  return _IMP_core.Gaussian_get_local_covariance_key()
10998 
10999 def Gaussian_get_global_covariance_key():
11000  """Gaussian_get_global_covariance_key() -> ObjectKey"""
11001  return _IMP_core.Gaussian_get_global_covariance_key()
11002 
11003 def Gaussian_get_is_setup(*args):
11004  """
11005  get_is_setup(_ParticleAdaptor p) -> bool
11006  Gaussian_get_is_setup(Model m, ParticleIndex pi) -> bool
11007  """
11008  return _IMP_core.Gaussian_get_is_setup(*args)
11009 
11010 class PairRestraint(IMP.Restraint):
11011  """Proxy of C++ IMP::core::PairRestraint class."""
11012 
11013  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
11014 
11015  def __init__(self, *args):
11016  """
11017  __init__(IMP::core::PairRestraint self, Model m, PairScore ss, IMP::ParticleIndexPair const & vt, std::string name) -> PairRestraint
11018  __init__(IMP::core::PairRestraint self, Model m, PairScore ss, IMP::ParticleIndexPair const & vt) -> PairRestraint
11019  """
11020  this = _IMP_core.new_PairRestraint(*args)
11021  try:
11022  self.this.append(this)
11023  except __builtin__.Exception:
11024  self.this = this
11025 
11026  def get_version_info(self):
11027  """get_version_info(PairRestraint self) -> VersionInfo"""
11028  return _IMP_core.PairRestraint_get_version_info(self)
11029 
11030 
11031  def __str__(self):
11032  """__str__(PairRestraint self) -> std::string"""
11033  return _IMP_core.PairRestraint___str__(self)
11034 
11035 
11036  def __repr__(self):
11037  """__repr__(PairRestraint self) -> std::string"""
11038  return _IMP_core.PairRestraint___repr__(self)
11039 
11040 
11041  @staticmethod
11042  def get_from(o):
11043  return _object_cast_to_PairRestraint(o)
11044 
11045 PairRestraint_swigregister = _IMP_core.PairRestraint_swigregister
11046 PairRestraint_swigregister(PairRestraint)
11047 
11048 class SingletonRestraint(IMP.Restraint):
11049  """Proxy of C++ IMP::core::SingletonRestraint class."""
11050 
11051  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
11052 
11053  def __init__(self, *args):
11054  """
11055  __init__(IMP::core::SingletonRestraint self, Model m, SingletonScore ss, ParticleIndex vt, std::string name) -> SingletonRestraint
11056  __init__(IMP::core::SingletonRestraint self, Model m, SingletonScore ss, ParticleIndex vt) -> SingletonRestraint
11057  """
11058  this = _IMP_core.new_SingletonRestraint(*args)
11059  try:
11060  self.this.append(this)
11061  except __builtin__.Exception:
11062  self.this = this
11063 
11064  def get_version_info(self):
11065  """get_version_info(SingletonRestraint self) -> VersionInfo"""
11066  return _IMP_core.SingletonRestraint_get_version_info(self)
11067 
11068 
11069  def __str__(self):
11070  """__str__(SingletonRestraint self) -> std::string"""
11071  return _IMP_core.SingletonRestraint___str__(self)
11072 
11073 
11074  def __repr__(self):
11075  """__repr__(SingletonRestraint self) -> std::string"""
11076  return _IMP_core.SingletonRestraint___repr__(self)
11077 
11078 
11079  @staticmethod
11080  def get_from(o):
11081  return _object_cast_to_SingletonRestraint(o)
11082 
11083 SingletonRestraint_swigregister = _IMP_core.SingletonRestraint_swigregister
11084 SingletonRestraint_swigregister(SingletonRestraint)
11085 
11086 class TripletRestraint(IMP.Restraint):
11087  """Proxy of C++ IMP::core::TripletRestraint class."""
11088 
11089  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
11090 
11091  def __init__(self, *args):
11092  """
11093  __init__(IMP::core::TripletRestraint self, Model m, TripletScore ss, IMP::ParticleIndexTriplet const & vt, std::string name) -> TripletRestraint
11094  __init__(IMP::core::TripletRestraint self, Model m, TripletScore ss, IMP::ParticleIndexTriplet const & vt) -> TripletRestraint
11095  """
11096  this = _IMP_core.new_TripletRestraint(*args)
11097  try:
11098  self.this.append(this)
11099  except __builtin__.Exception:
11100  self.this = this
11101 
11102  def get_version_info(self):
11103  """get_version_info(TripletRestraint self) -> VersionInfo"""
11104  return _IMP_core.TripletRestraint_get_version_info(self)
11105 
11106 
11107  def __str__(self):
11108  """__str__(TripletRestraint self) -> std::string"""
11109  return _IMP_core.TripletRestraint___str__(self)
11110 
11111 
11112  def __repr__(self):
11113  """__repr__(TripletRestraint self) -> std::string"""
11114  return _IMP_core.TripletRestraint___repr__(self)
11115 
11116 
11117  @staticmethod
11118  def get_from(o):
11119  return _object_cast_to_TripletRestraint(o)
11120 
11121 TripletRestraint_swigregister = _IMP_core.TripletRestraint_swigregister
11122 TripletRestraint_swigregister(TripletRestraint)
11123 
11124 class QuadRestraint(IMP.Restraint):
11125  """Proxy of C++ IMP::core::QuadRestraint class."""
11126 
11127  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
11128 
11129  def __init__(self, *args):
11130  """
11131  __init__(IMP::core::QuadRestraint self, Model m, QuadScore ss, IMP::ParticleIndexQuad const & vt, std::string name) -> QuadRestraint
11132  __init__(IMP::core::QuadRestraint self, Model m, QuadScore ss, IMP::ParticleIndexQuad const & vt) -> QuadRestraint
11133  """
11134  this = _IMP_core.new_QuadRestraint(*args)
11135  try:
11136  self.this.append(this)
11137  except __builtin__.Exception:
11138  self.this = this
11139 
11140  def get_version_info(self):
11141  """get_version_info(QuadRestraint self) -> VersionInfo"""
11142  return _IMP_core.QuadRestraint_get_version_info(self)
11143 
11144 
11145  def __str__(self):
11146  """__str__(QuadRestraint self) -> std::string"""
11147  return _IMP_core.QuadRestraint___str__(self)
11148 
11149 
11150  def __repr__(self):
11151  """__repr__(QuadRestraint self) -> std::string"""
11152  return _IMP_core.QuadRestraint___repr__(self)
11153 
11154 
11155  @staticmethod
11156  def get_from(o):
11157  return _object_cast_to_QuadRestraint(o)
11158 
11159 QuadRestraint_swigregister = _IMP_core.QuadRestraint_swigregister
11160 QuadRestraint_swigregister(QuadRestraint)
11161 
11162 class SingletonConstraint(IMP.Constraint):
11163  """Proxy of C++ IMP::core::SingletonConstraint class."""
11164 
11165  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
11166 
11167  def __init__(self, *args):
11168  """
11169  __init__(IMP::core::SingletonConstraint self, SingletonModifier before, SingletonModifier after, Particle vt, std::string name) -> SingletonConstraint
11170  __init__(IMP::core::SingletonConstraint self, SingletonModifier before, SingletonModifier after, Particle vt) -> SingletonConstraint
11171  __init__(IMP::core::SingletonConstraint self, SingletonModifier before, SingletonModifier after, Model m, ParticleIndex vt, std::string name) -> SingletonConstraint
11172  __init__(IMP::core::SingletonConstraint self, SingletonModifier before, SingletonModifier after, Model m, ParticleIndex vt) -> SingletonConstraint
11173  """
11174  this = _IMP_core.new_SingletonConstraint(*args)
11175  try:
11176  self.this.append(this)
11177  except __builtin__.Exception:
11178  self.this = this
11179 
11180  def get_version_info(self):
11181  """get_version_info(SingletonConstraint self) -> VersionInfo"""
11182  return _IMP_core.SingletonConstraint_get_version_info(self)
11183 
11184 
11185  def __str__(self):
11186  """__str__(SingletonConstraint self) -> std::string"""
11187  return _IMP_core.SingletonConstraint___str__(self)
11188 
11189 
11190  def __repr__(self):
11191  """__repr__(SingletonConstraint self) -> std::string"""
11192  return _IMP_core.SingletonConstraint___repr__(self)
11193 
11194 
11195  @staticmethod
11196  def get_from(o):
11197  return _object_cast_to_SingletonConstraint(o)
11198 
11199 SingletonConstraint_swigregister = _IMP_core.SingletonConstraint_swigregister
11200 SingletonConstraint_swigregister(SingletonConstraint)
11201 
11202 class PairConstraint(IMP.Constraint):
11203  """Proxy of C++ IMP::core::PairConstraint class."""
11204 
11205  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
11206 
11207  def __init__(self, *args):
11208  """
11209  __init__(IMP::core::PairConstraint self, PairModifier before, PairModifier after, IMP::ParticlePair const & vt, std::string name) -> PairConstraint
11210  __init__(IMP::core::PairConstraint self, PairModifier before, PairModifier after, IMP::ParticlePair const & vt) -> PairConstraint
11211  __init__(IMP::core::PairConstraint self, PairModifier before, PairModifier after, Model m, IMP::ParticleIndexPair const & vt, std::string name) -> PairConstraint
11212  __init__(IMP::core::PairConstraint self, PairModifier before, PairModifier after, Model m, IMP::ParticleIndexPair const & vt) -> PairConstraint
11213  """
11214  this = _IMP_core.new_PairConstraint(*args)
11215  try:
11216  self.this.append(this)
11217  except __builtin__.Exception:
11218  self.this = this
11219 
11220  def get_version_info(self):
11221  """get_version_info(PairConstraint self) -> VersionInfo"""
11222  return _IMP_core.PairConstraint_get_version_info(self)
11223 
11224 
11225  def __str__(self):
11226  """__str__(PairConstraint self) -> std::string"""
11227  return _IMP_core.PairConstraint___str__(self)
11228 
11229 
11230  def __repr__(self):
11231  """__repr__(PairConstraint self) -> std::string"""
11232  return _IMP_core.PairConstraint___repr__(self)
11233 
11234 
11235  @staticmethod
11236  def get_from(o):
11237  return _object_cast_to_PairConstraint(o)
11238 
11239 PairConstraint_swigregister = _IMP_core.PairConstraint_swigregister
11240 PairConstraint_swigregister(PairConstraint)
11241 
11242 class TripletConstraint(IMP.Constraint):
11243  """Proxy of C++ IMP::core::TripletConstraint class."""
11244 
11245  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
11246 
11247  def __init__(self, *args):
11248  """
11249  __init__(IMP::core::TripletConstraint self, TripletModifier before, TripletModifier after, IMP::ParticleTriplet const & vt, std::string name) -> TripletConstraint
11250  __init__(IMP::core::TripletConstraint self, TripletModifier before, TripletModifier after, IMP::ParticleTriplet const & vt) -> TripletConstraint
11251  __init__(IMP::core::TripletConstraint self, TripletModifier before, TripletModifier after, Model m, IMP::ParticleIndexTriplet const & vt, std::string name) -> TripletConstraint
11252  __init__(IMP::core::TripletConstraint self, TripletModifier before, TripletModifier after, Model m, IMP::ParticleIndexTriplet const & vt) -> TripletConstraint
11253  """
11254  this = _IMP_core.new_TripletConstraint(*args)
11255  try:
11256  self.this.append(this)
11257  except __builtin__.Exception:
11258  self.this = this
11259 
11260  def get_version_info(self):
11261  """get_version_info(TripletConstraint self) -> VersionInfo"""
11262  return _IMP_core.TripletConstraint_get_version_info(self)
11263 
11264 
11265  def __str__(self):
11266  """__str__(TripletConstraint self) -> std::string"""
11267  return _IMP_core.TripletConstraint___str__(self)
11268 
11269 
11270  def __repr__(self):
11271  """__repr__(TripletConstraint self) -> std::string"""
11272  return _IMP_core.TripletConstraint___repr__(self)
11273 
11274 
11275  @staticmethod
11276  def get_from(o):
11277  return _object_cast_to_TripletConstraint(o)
11278 
11279 TripletConstraint_swigregister = _IMP_core.TripletConstraint_swigregister
11280 TripletConstraint_swigregister(TripletConstraint)
11281 
11282 class QuadConstraint(IMP.Constraint):
11283  """Proxy of C++ IMP::core::QuadConstraint class."""
11284 
11285  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
11286 
11287  def __init__(self, *args):
11288  """
11289  __init__(IMP::core::QuadConstraint self, QuadModifier before, QuadModifier after, IMP::ParticleQuad const & vt, std::string name) -> QuadConstraint
11290  __init__(IMP::core::QuadConstraint self, QuadModifier before, QuadModifier after, IMP::ParticleQuad const & vt) -> QuadConstraint
11291  __init__(IMP::core::QuadConstraint self, QuadModifier before, QuadModifier after, Model m, IMP::ParticleIndexQuad const & vt, std::string name) -> QuadConstraint
11292  __init__(IMP::core::QuadConstraint self, QuadModifier before, QuadModifier after, Model m, IMP::ParticleIndexQuad const & vt) -> QuadConstraint
11293  """
11294  this = _IMP_core.new_QuadConstraint(*args)
11295  try:
11296  self.this.append(this)
11297  except __builtin__.Exception:
11298  self.this = this
11299 
11300  def get_version_info(self):
11301  """get_version_info(QuadConstraint self) -> VersionInfo"""
11302  return _IMP_core.QuadConstraint_get_version_info(self)
11303 
11304 
11305  def __str__(self):
11306  """__str__(QuadConstraint self) -> std::string"""
11307  return _IMP_core.QuadConstraint___str__(self)
11308 
11309 
11310  def __repr__(self):
11311  """__repr__(QuadConstraint self) -> std::string"""
11312  return _IMP_core.QuadConstraint___repr__(self)
11313 
11314 
11315  @staticmethod
11316  def get_from(o):
11317  return _object_cast_to_QuadConstraint(o)
11318 
11319 QuadConstraint_swigregister = _IMP_core.QuadConstraint_swigregister
11320 QuadConstraint_swigregister(QuadConstraint)
11321 
11322 class ConstantSingletonPredicate(IMP.SingletonPredicate):
11323  """Proxy of C++ IMP::core::ConstantSingletonPredicate class."""
11324 
11325  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
11326 
11327  def __init__(self, *args):
11328  """
11329  __init__(IMP::core::ConstantSingletonPredicate self, int v, std::string name) -> ConstantSingletonPredicate
11330  __init__(IMP::core::ConstantSingletonPredicate self, int v) -> ConstantSingletonPredicate
11331  """
11332  this = _IMP_core.new_ConstantSingletonPredicate(*args)
11333  try:
11334  self.this.append(this)
11335  except __builtin__.Exception:
11336  self.this = this
11337 
11338  def do_get_inputs(self, arg2, arg3):
11339  """do_get_inputs(ConstantSingletonPredicate self, Model arg2, IMP::ParticleIndexes const & arg3) -> IMP::ModelObjectsTemp"""
11340  return _IMP_core.ConstantSingletonPredicate_do_get_inputs(self, arg2, arg3)
11341 
11342 
11343  def get_value(self, *args):
11344  """
11345  get_value(ConstantSingletonPredicate self, Particle a) -> int
11346  get_value(ConstantSingletonPredicate self, IMP::ParticlesTemp const & o) -> IMP::Ints
11347  """
11348  return _IMP_core.ConstantSingletonPredicate_get_value(self, *args)
11349 
11350 
11351  def get_value_index(self, *args):
11352  """
11353  get_value_index(ConstantSingletonPredicate self, Model arg2, ParticleIndex arg3) -> int
11354  get_value_index(ConstantSingletonPredicate self, Model m, IMP::ParticleIndexes const & o) -> IMP::Ints
11355  """
11356  return _IMP_core.ConstantSingletonPredicate_get_value_index(self, *args)
11357 
11358 
11359  def get_version_info(self):
11360  """get_version_info(ConstantSingletonPredicate self) -> VersionInfo"""
11361  return _IMP_core.ConstantSingletonPredicate_get_version_info(self)
11362 
11363 
11364  def __str__(self):
11365  """__str__(ConstantSingletonPredicate self) -> std::string"""
11366  return _IMP_core.ConstantSingletonPredicate___str__(self)
11367 
11368 
11369  def __repr__(self):
11370  """__repr__(ConstantSingletonPredicate self) -> std::string"""
11371  return _IMP_core.ConstantSingletonPredicate___repr__(self)
11372 
11373 
11374  @staticmethod
11375  def get_from(o):
11376  return _object_cast_to_ConstantSingletonPredicate(o)
11377 
11378 ConstantSingletonPredicate_swigregister = _IMP_core.ConstantSingletonPredicate_swigregister
11379 ConstantSingletonPredicate_swigregister(ConstantSingletonPredicate)
11380 
11381 class UnorderedTypeSingletonPredicate(IMP.SingletonPredicate):
11382  """Proxy of C++ IMP::core::UnorderedTypeSingletonPredicate class."""
11383 
11384  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
11385 
11386  def __init__(self, *args):
11387  """
11388  __init__(IMP::core::UnorderedTypeSingletonPredicate self, std::string name) -> UnorderedTypeSingletonPredicate
11389  __init__(IMP::core::UnorderedTypeSingletonPredicate self) -> UnorderedTypeSingletonPredicate
11390  """
11391  this = _IMP_core.new_UnorderedTypeSingletonPredicate(*args)
11392  try:
11393  self.this.append(this)
11394  except __builtin__.Exception:
11395  self.this = this
11396 
11397  def do_get_inputs(self, m, pis):
11398  """do_get_inputs(UnorderedTypeSingletonPredicate self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
11399  return _IMP_core.UnorderedTypeSingletonPredicate_do_get_inputs(self, m, pis)
11400 
11401 
11402  def get_value(self, *args):
11403  """
11404  get_value(UnorderedTypeSingletonPredicate self, Particle a) -> int
11405  get_value(UnorderedTypeSingletonPredicate self, IMP::ParticlesTemp const & o) -> IMP::Ints
11406  """
11407  return _IMP_core.UnorderedTypeSingletonPredicate_get_value(self, *args)
11408 
11409 
11410  def get_value_index(self, *args):
11411  """
11412  get_value_index(UnorderedTypeSingletonPredicate self, Model m, ParticleIndex pi) -> int
11413  get_value_index(UnorderedTypeSingletonPredicate self, Model m, IMP::ParticleIndexes const & o) -> IMP::Ints
11414  """
11415  return _IMP_core.UnorderedTypeSingletonPredicate_get_value_index(self, *args)
11416 
11417 
11418  def get_version_info(self):
11419  """get_version_info(UnorderedTypeSingletonPredicate self) -> VersionInfo"""
11420  return _IMP_core.UnorderedTypeSingletonPredicate_get_version_info(self)
11421 
11422 
11423  def __str__(self):
11424  """__str__(UnorderedTypeSingletonPredicate self) -> std::string"""
11425  return _IMP_core.UnorderedTypeSingletonPredicate___str__(self)
11426 
11427 
11428  def __repr__(self):
11429  """__repr__(UnorderedTypeSingletonPredicate self) -> std::string"""
11430  return _IMP_core.UnorderedTypeSingletonPredicate___repr__(self)
11431 
11432 
11433  @staticmethod
11434  def get_from(o):
11435  return _object_cast_to_UnorderedTypeSingletonPredicate(o)
11436 
11437 UnorderedTypeSingletonPredicate_swigregister = _IMP_core.UnorderedTypeSingletonPredicate_swigregister
11438 UnorderedTypeSingletonPredicate_swigregister(UnorderedTypeSingletonPredicate)
11439 
11440 class OrderedTypeSingletonPredicate(IMP.SingletonPredicate):
11441  """Proxy of C++ IMP::core::OrderedTypeSingletonPredicate class."""
11442 
11443  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
11444 
11445  def __init__(self, *args):
11446  """
11447  __init__(IMP::core::OrderedTypeSingletonPredicate self, std::string name) -> OrderedTypeSingletonPredicate
11448  __init__(IMP::core::OrderedTypeSingletonPredicate self) -> OrderedTypeSingletonPredicate
11449  """
11450  this = _IMP_core.new_OrderedTypeSingletonPredicate(*args)
11451  try:
11452  self.this.append(this)
11453  except __builtin__.Exception:
11454  self.this = this
11455 
11456  def do_get_inputs(self, m, pis):
11457  """do_get_inputs(OrderedTypeSingletonPredicate self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
11458  return _IMP_core.OrderedTypeSingletonPredicate_do_get_inputs(self, m, pis)
11459 
11460 
11461  def get_value(self, *args):
11462  """
11463  get_value(OrderedTypeSingletonPredicate self, IMP::core::ParticleTypes const & types) -> int
11464  get_value(OrderedTypeSingletonPredicate self, Particle a) -> int
11465  get_value(OrderedTypeSingletonPredicate self, IMP::ParticlesTemp const & o) -> IMP::Ints
11466  """
11467  return _IMP_core.OrderedTypeSingletonPredicate_get_value(self, *args)
11468 
11469 
11470  def get_value_index(self, *args):
11471  """
11472  get_value_index(OrderedTypeSingletonPredicate self, Model m, ParticleIndex pi) -> int
11473  get_value_index(OrderedTypeSingletonPredicate self, Model m, IMP::ParticleIndexes const & o) -> IMP::Ints
11474  """
11475  return _IMP_core.OrderedTypeSingletonPredicate_get_value_index(self, *args)
11476 
11477 
11478  def get_version_info(self):
11479  """get_version_info(OrderedTypeSingletonPredicate self) -> VersionInfo"""
11480  return _IMP_core.OrderedTypeSingletonPredicate_get_version_info(self)
11481 
11482 
11483  def __str__(self):
11484  """__str__(OrderedTypeSingletonPredicate self) -> std::string"""
11485  return _IMP_core.OrderedTypeSingletonPredicate___str__(self)
11486 
11487 
11488  def __repr__(self):
11489  """__repr__(OrderedTypeSingletonPredicate self) -> std::string"""
11490  return _IMP_core.OrderedTypeSingletonPredicate___repr__(self)
11491 
11492 
11493  @staticmethod
11494  def get_from(o):
11495  return _object_cast_to_OrderedTypeSingletonPredicate(o)
11496 
11497 OrderedTypeSingletonPredicate_swigregister = _IMP_core.OrderedTypeSingletonPredicate_swigregister
11498 OrderedTypeSingletonPredicate_swigregister(OrderedTypeSingletonPredicate)
11499 
11500 class AllSameSingletonPredicate(IMP.SingletonPredicate):
11501  """Proxy of C++ IMP::core::AllSameSingletonPredicate class."""
11502 
11503  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
11504 
11505  def __init__(self, *args):
11506  """
11507  __init__(IMP::core::AllSameSingletonPredicate self, std::string name) -> AllSameSingletonPredicate
11508  __init__(IMP::core::AllSameSingletonPredicate self) -> AllSameSingletonPredicate
11509  """
11510  this = _IMP_core.new_AllSameSingletonPredicate(*args)
11511  try:
11512  self.this.append(this)
11513  except __builtin__.Exception:
11514  self.this = this
11515 
11516  def do_get_inputs(self, arg2, arg3):
11517  """do_get_inputs(AllSameSingletonPredicate self, Model arg2, IMP::ParticleIndexes const & arg3) -> IMP::ModelObjectsTemp"""
11518  return _IMP_core.AllSameSingletonPredicate_do_get_inputs(self, arg2, arg3)
11519 
11520 
11521  def get_value(self, *args):
11522  """
11523  get_value(AllSameSingletonPredicate self, Particle a) -> int
11524  get_value(AllSameSingletonPredicate self, IMP::ParticlesTemp const & o) -> IMP::Ints
11525  """
11526  return _IMP_core.AllSameSingletonPredicate_get_value(self, *args)
11527 
11528 
11529  def get_value_index(self, *args):
11530  """
11531  get_value_index(AllSameSingletonPredicate self, Model m, ParticleIndex pi) -> int
11532  get_value_index(AllSameSingletonPredicate self, Model m, IMP::ParticleIndexes const & o) -> IMP::Ints
11533  """
11534  return _IMP_core.AllSameSingletonPredicate_get_value_index(self, *args)
11535 
11536 
11537  def get_version_info(self):
11538  """get_version_info(AllSameSingletonPredicate self) -> VersionInfo"""
11539  return _IMP_core.AllSameSingletonPredicate_get_version_info(self)
11540 
11541 
11542  def __str__(self):
11543  """__str__(AllSameSingletonPredicate self) -> std::string"""
11544  return _IMP_core.AllSameSingletonPredicate___str__(self)
11545 
11546 
11547  def __repr__(self):
11548  """__repr__(AllSameSingletonPredicate self) -> std::string"""
11549  return _IMP_core.AllSameSingletonPredicate___repr__(self)
11550 
11551 
11552  @staticmethod
11553  def get_from(o):
11554  return _object_cast_to_AllSameSingletonPredicate(o)
11555 
11556 AllSameSingletonPredicate_swigregister = _IMP_core.AllSameSingletonPredicate_swigregister
11557 AllSameSingletonPredicate_swigregister(AllSameSingletonPredicate)
11558 
11559 class CoinFlipSingletonPredicate(IMP.SingletonPredicate):
11560  """Proxy of C++ IMP::core::CoinFlipSingletonPredicate class."""
11561 
11562  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
11563 
11564  def __init__(self, *args):
11565  """
11566  __init__(IMP::core::CoinFlipSingletonPredicate self, double p, std::string name) -> CoinFlipSingletonPredicate
11567  __init__(IMP::core::CoinFlipSingletonPredicate self, double p) -> CoinFlipSingletonPredicate
11568  """
11569  this = _IMP_core.new_CoinFlipSingletonPredicate(*args)
11570  try:
11571  self.this.append(this)
11572  except __builtin__.Exception:
11573  self.this = this
11574 
11575  def do_get_inputs(self, arg2, arg3):
11576  """do_get_inputs(CoinFlipSingletonPredicate self, Model arg2, IMP::ParticleIndexes const & arg3) -> IMP::ModelObjectsTemp"""
11577  return _IMP_core.CoinFlipSingletonPredicate_do_get_inputs(self, arg2, arg3)
11578 
11579 
11580  def get_value(self, *args):
11581  """
11582  get_value(CoinFlipSingletonPredicate self, Particle a) -> int
11583  get_value(CoinFlipSingletonPredicate self, IMP::ParticlesTemp const & o) -> IMP::Ints
11584  """
11585  return _IMP_core.CoinFlipSingletonPredicate_get_value(self, *args)
11586 
11587 
11588  def get_value_index(self, *args):
11589  """
11590  get_value_index(CoinFlipSingletonPredicate self, Model arg2, ParticleIndex arg3) -> int
11591  get_value_index(CoinFlipSingletonPredicate self, Model m, IMP::ParticleIndexes const & o) -> IMP::Ints
11592  """
11593  return _IMP_core.CoinFlipSingletonPredicate_get_value_index(self, *args)
11594 
11595 
11596  def get_version_info(self):
11597  """get_version_info(CoinFlipSingletonPredicate self) -> VersionInfo"""
11598  return _IMP_core.CoinFlipSingletonPredicate_get_version_info(self)
11599 
11600 
11601  def __str__(self):
11602  """__str__(CoinFlipSingletonPredicate self) -> std::string"""
11603  return _IMP_core.CoinFlipSingletonPredicate___str__(self)
11604 
11605 
11606  def __repr__(self):
11607  """__repr__(CoinFlipSingletonPredicate self) -> std::string"""
11608  return _IMP_core.CoinFlipSingletonPredicate___repr__(self)
11609 
11610 
11611  @staticmethod
11612  def get_from(o):
11613  return _object_cast_to_CoinFlipSingletonPredicate(o)
11614 
11615 CoinFlipSingletonPredicate_swigregister = _IMP_core.CoinFlipSingletonPredicate_swigregister
11616 CoinFlipSingletonPredicate_swigregister(CoinFlipSingletonPredicate)
11617 
11618 class ConstantPairPredicate(IMP.PairPredicate):
11619  """Proxy of C++ IMP::core::ConstantPairPredicate class."""
11620 
11621  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
11622 
11623  def __init__(self, *args):
11624  """
11625  __init__(IMP::core::ConstantPairPredicate self, int v, std::string name) -> ConstantPairPredicate
11626  __init__(IMP::core::ConstantPairPredicate self, int v) -> ConstantPairPredicate
11627  """
11628  this = _IMP_core.new_ConstantPairPredicate(*args)
11629  try:
11630  self.this.append(this)
11631  except __builtin__.Exception:
11632  self.this = this
11633 
11634  def do_get_inputs(self, arg2, arg3):
11635  """do_get_inputs(ConstantPairPredicate self, Model arg2, IMP::ParticleIndexes const & arg3) -> IMP::ModelObjectsTemp"""
11636  return _IMP_core.ConstantPairPredicate_do_get_inputs(self, arg2, arg3)
11637 
11638 
11639  def get_value(self, *args):
11640  """
11641  get_value(ConstantPairPredicate self, IMP::ParticlePair const & a) -> int
11642  get_value(ConstantPairPredicate self, IMP::ParticlePairsTemp const & o) -> IMP::Ints
11643  """
11644  return _IMP_core.ConstantPairPredicate_get_value(self, *args)
11645 
11646 
11647  def get_value_index(self, *args):
11648  """
11649  get_value_index(ConstantPairPredicate self, Model arg2, IMP::ParticleIndexPair const & arg3) -> int
11650  get_value_index(ConstantPairPredicate self, Model m, IMP::ParticleIndexPairs const & o) -> IMP::Ints
11651  """
11652  return _IMP_core.ConstantPairPredicate_get_value_index(self, *args)
11653 
11654 
11655  def get_version_info(self):
11656  """get_version_info(ConstantPairPredicate self) -> VersionInfo"""
11657  return _IMP_core.ConstantPairPredicate_get_version_info(self)
11658 
11659 
11660  def __str__(self):
11661  """__str__(ConstantPairPredicate self) -> std::string"""
11662  return _IMP_core.ConstantPairPredicate___str__(self)
11663 
11664 
11665  def __repr__(self):
11666  """__repr__(ConstantPairPredicate self) -> std::string"""
11667  return _IMP_core.ConstantPairPredicate___repr__(self)
11668 
11669 
11670  @staticmethod
11671  def get_from(o):
11672  return _object_cast_to_ConstantPairPredicate(o)
11673 
11674 ConstantPairPredicate_swigregister = _IMP_core.ConstantPairPredicate_swigregister
11675 ConstantPairPredicate_swigregister(ConstantPairPredicate)
11676 
11677 class UnorderedTypePairPredicate(IMP.PairPredicate):
11678  """Proxy of C++ IMP::core::UnorderedTypePairPredicate class."""
11679 
11680  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
11681 
11682  def __init__(self, *args):
11683  """
11684  __init__(IMP::core::UnorderedTypePairPredicate self, std::string name) -> UnorderedTypePairPredicate
11685  __init__(IMP::core::UnorderedTypePairPredicate self) -> UnorderedTypePairPredicate
11686  """
11687  this = _IMP_core.new_UnorderedTypePairPredicate(*args)
11688  try:
11689  self.this.append(this)
11690  except __builtin__.Exception:
11691  self.this = this
11692 
11693  def do_get_inputs(self, m, pis):
11694  """do_get_inputs(UnorderedTypePairPredicate self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
11695  return _IMP_core.UnorderedTypePairPredicate_do_get_inputs(self, m, pis)
11696 
11697 
11698  def get_value(self, *args):
11699  """
11700  get_value(UnorderedTypePairPredicate self, IMP::ParticlePair const & a) -> int
11701  get_value(UnorderedTypePairPredicate self, IMP::ParticlePairsTemp const & o) -> IMP::Ints
11702  """
11703  return _IMP_core.UnorderedTypePairPredicate_get_value(self, *args)
11704 
11705 
11706  def get_value_index(self, *args):
11707  """
11708  get_value_index(UnorderedTypePairPredicate self, Model m, IMP::ParticleIndexPair const & pi) -> int
11709  get_value_index(UnorderedTypePairPredicate self, Model m, IMP::ParticleIndexPairs const & o) -> IMP::Ints
11710  """
11711  return _IMP_core.UnorderedTypePairPredicate_get_value_index(self, *args)
11712 
11713 
11714  def get_version_info(self):
11715  """get_version_info(UnorderedTypePairPredicate self) -> VersionInfo"""
11716  return _IMP_core.UnorderedTypePairPredicate_get_version_info(self)
11717 
11718 
11719  def __str__(self):
11720  """__str__(UnorderedTypePairPredicate self) -> std::string"""
11721  return _IMP_core.UnorderedTypePairPredicate___str__(self)
11722 
11723 
11724  def __repr__(self):
11725  """__repr__(UnorderedTypePairPredicate self) -> std::string"""
11726  return _IMP_core.UnorderedTypePairPredicate___repr__(self)
11727 
11728 
11729  @staticmethod
11730  def get_from(o):
11731  return _object_cast_to_UnorderedTypePairPredicate(o)
11732 
11733 UnorderedTypePairPredicate_swigregister = _IMP_core.UnorderedTypePairPredicate_swigregister
11734 UnorderedTypePairPredicate_swigregister(UnorderedTypePairPredicate)
11735 
11736 class OrderedTypePairPredicate(IMP.PairPredicate):
11737  """Proxy of C++ IMP::core::OrderedTypePairPredicate class."""
11738 
11739  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
11740 
11741  def __init__(self, *args):
11742  """
11743  __init__(IMP::core::OrderedTypePairPredicate self, std::string name) -> OrderedTypePairPredicate
11744  __init__(IMP::core::OrderedTypePairPredicate self) -> OrderedTypePairPredicate
11745  """
11746  this = _IMP_core.new_OrderedTypePairPredicate(*args)
11747  try:
11748  self.this.append(this)
11749  except __builtin__.Exception:
11750  self.this = this
11751 
11752  def do_get_inputs(self, m, pis):
11753  """do_get_inputs(OrderedTypePairPredicate self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
11754  return _IMP_core.OrderedTypePairPredicate_do_get_inputs(self, m, pis)
11755 
11756 
11757  def get_value(self, *args):
11758  """
11759  get_value(OrderedTypePairPredicate self, IMP::core::ParticleTypes const & types) -> int
11760  get_value(OrderedTypePairPredicate self, IMP::ParticlePair const & a) -> int
11761  get_value(OrderedTypePairPredicate self, IMP::ParticlePairsTemp const & o) -> IMP::Ints
11762  """
11763  return _IMP_core.OrderedTypePairPredicate_get_value(self, *args)
11764 
11765 
11766  def get_value_index(self, *args):
11767  """
11768  get_value_index(OrderedTypePairPredicate self, Model m, IMP::ParticleIndexPair const & pi) -> int
11769  get_value_index(OrderedTypePairPredicate self, Model m, IMP::ParticleIndexPairs const & o) -> IMP::Ints
11770  """
11771  return _IMP_core.OrderedTypePairPredicate_get_value_index(self, *args)
11772 
11773 
11774  def get_version_info(self):
11775  """get_version_info(OrderedTypePairPredicate self) -> VersionInfo"""
11776  return _IMP_core.OrderedTypePairPredicate_get_version_info(self)
11777 
11778 
11779  def __str__(self):
11780  """__str__(OrderedTypePairPredicate self) -> std::string"""
11781  return _IMP_core.OrderedTypePairPredicate___str__(self)
11782 
11783 
11784  def __repr__(self):
11785  """__repr__(OrderedTypePairPredicate self) -> std::string"""
11786  return _IMP_core.OrderedTypePairPredicate___repr__(self)
11787 
11788 
11789  @staticmethod
11790  def get_from(o):
11791  return _object_cast_to_OrderedTypePairPredicate(o)
11792 
11793 OrderedTypePairPredicate_swigregister = _IMP_core.OrderedTypePairPredicate_swigregister
11794 OrderedTypePairPredicate_swigregister(OrderedTypePairPredicate)
11795 
11796 class AllSamePairPredicate(IMP.PairPredicate):
11797  """Proxy of C++ IMP::core::AllSamePairPredicate class."""
11798 
11799  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
11800 
11801  def __init__(self, *args):
11802  """
11803  __init__(IMP::core::AllSamePairPredicate self, std::string name) -> AllSamePairPredicate
11804  __init__(IMP::core::AllSamePairPredicate self) -> AllSamePairPredicate
11805  """
11806  this = _IMP_core.new_AllSamePairPredicate(*args)
11807  try:
11808  self.this.append(this)
11809  except __builtin__.Exception:
11810  self.this = this
11811 
11812  def do_get_inputs(self, arg2, arg3):
11813  """do_get_inputs(AllSamePairPredicate self, Model arg2, IMP::ParticleIndexes const & arg3) -> IMP::ModelObjectsTemp"""
11814  return _IMP_core.AllSamePairPredicate_do_get_inputs(self, arg2, arg3)
11815 
11816 
11817  def get_value(self, *args):
11818  """
11819  get_value(AllSamePairPredicate self, IMP::ParticlePair const & a) -> int
11820  get_value(AllSamePairPredicate self, IMP::ParticlePairsTemp const & o) -> IMP::Ints
11821  """
11822  return _IMP_core.AllSamePairPredicate_get_value(self, *args)
11823 
11824 
11825  def get_value_index(self, *args):
11826  """
11827  get_value_index(AllSamePairPredicate self, Model m, IMP::ParticleIndexPair const & pi) -> int
11828  get_value_index(AllSamePairPredicate self, Model m, IMP::ParticleIndexPairs const & o) -> IMP::Ints
11829  """
11830  return _IMP_core.AllSamePairPredicate_get_value_index(self, *args)
11831 
11832 
11833  def get_version_info(self):
11834  """get_version_info(AllSamePairPredicate self) -> VersionInfo"""
11835  return _IMP_core.AllSamePairPredicate_get_version_info(self)
11836 
11837 
11838  def __str__(self):
11839  """__str__(AllSamePairPredicate self) -> std::string"""
11840  return _IMP_core.AllSamePairPredicate___str__(self)
11841 
11842 
11843  def __repr__(self):
11844  """__repr__(AllSamePairPredicate self) -> std::string"""
11845  return _IMP_core.AllSamePairPredicate___repr__(self)
11846 
11847 
11848  @staticmethod
11849  def get_from(o):
11850  return _object_cast_to_AllSamePairPredicate(o)
11851 
11852 AllSamePairPredicate_swigregister = _IMP_core.AllSamePairPredicate_swigregister
11853 AllSamePairPredicate_swigregister(AllSamePairPredicate)
11854 
11855 class CoinFlipPairPredicate(IMP.PairPredicate):
11856  """Proxy of C++ IMP::core::CoinFlipPairPredicate class."""
11857 
11858  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
11859 
11860  def __init__(self, *args):
11861  """
11862  __init__(IMP::core::CoinFlipPairPredicate self, double p, std::string name) -> CoinFlipPairPredicate
11863  __init__(IMP::core::CoinFlipPairPredicate self, double p) -> CoinFlipPairPredicate
11864  """
11865  this = _IMP_core.new_CoinFlipPairPredicate(*args)
11866  try:
11867  self.this.append(this)
11868  except __builtin__.Exception:
11869  self.this = this
11870 
11871  def do_get_inputs(self, arg2, arg3):
11872  """do_get_inputs(CoinFlipPairPredicate self, Model arg2, IMP::ParticleIndexes const & arg3) -> IMP::ModelObjectsTemp"""
11873  return _IMP_core.CoinFlipPairPredicate_do_get_inputs(self, arg2, arg3)
11874 
11875 
11876  def get_value(self, *args):
11877  """
11878  get_value(CoinFlipPairPredicate self, IMP::ParticlePair const & a) -> int
11879  get_value(CoinFlipPairPredicate self, IMP::ParticlePairsTemp const & o) -> IMP::Ints
11880  """
11881  return _IMP_core.CoinFlipPairPredicate_get_value(self, *args)
11882 
11883 
11884  def get_value_index(self, *args):
11885  """
11886  get_value_index(CoinFlipPairPredicate self, Model arg2, IMP::ParticleIndexPair const & arg3) -> int
11887  get_value_index(CoinFlipPairPredicate self, Model m, IMP::ParticleIndexPairs const & o) -> IMP::Ints
11888  """
11889  return _IMP_core.CoinFlipPairPredicate_get_value_index(self, *args)
11890 
11891 
11892  def get_version_info(self):
11893  """get_version_info(CoinFlipPairPredicate self) -> VersionInfo"""
11894  return _IMP_core.CoinFlipPairPredicate_get_version_info(self)
11895 
11896 
11897  def __str__(self):
11898  """__str__(CoinFlipPairPredicate self) -> std::string"""
11899  return _IMP_core.CoinFlipPairPredicate___str__(self)
11900 
11901 
11902  def __repr__(self):
11903  """__repr__(CoinFlipPairPredicate self) -> std::string"""
11904  return _IMP_core.CoinFlipPairPredicate___repr__(self)
11905 
11906 
11907  @staticmethod
11908  def get_from(o):
11909  return _object_cast_to_CoinFlipPairPredicate(o)
11910 
11911 CoinFlipPairPredicate_swigregister = _IMP_core.CoinFlipPairPredicate_swigregister
11912 CoinFlipPairPredicate_swigregister(CoinFlipPairPredicate)
11913 
11914 class ConstantTripletPredicate(IMP.TripletPredicate):
11915  """Proxy of C++ IMP::core::ConstantTripletPredicate class."""
11916 
11917  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
11918 
11919  def __init__(self, *args):
11920  """
11921  __init__(IMP::core::ConstantTripletPredicate self, int v, std::string name) -> ConstantTripletPredicate
11922  __init__(IMP::core::ConstantTripletPredicate self, int v) -> ConstantTripletPredicate
11923  """
11924  this = _IMP_core.new_ConstantTripletPredicate(*args)
11925  try:
11926  self.this.append(this)
11927  except __builtin__.Exception:
11928  self.this = this
11929 
11930  def do_get_inputs(self, arg2, arg3):
11931  """do_get_inputs(ConstantTripletPredicate self, Model arg2, IMP::ParticleIndexes const & arg3) -> IMP::ModelObjectsTemp"""
11932  return _IMP_core.ConstantTripletPredicate_do_get_inputs(self, arg2, arg3)
11933 
11934 
11935  def get_value(self, *args):
11936  """
11937  get_value(ConstantTripletPredicate self, IMP::ParticleTriplet const & a) -> int
11938  get_value(ConstantTripletPredicate self, IMP::ParticleTripletsTemp const & o) -> IMP::Ints
11939  """
11940  return _IMP_core.ConstantTripletPredicate_get_value(self, *args)
11941 
11942 
11943  def get_value_index(self, *args):
11944  """
11945  get_value_index(ConstantTripletPredicate self, Model arg2, IMP::ParticleIndexTriplet const & arg3) -> int
11946  get_value_index(ConstantTripletPredicate self, Model m, IMP::ParticleIndexTriplets const & o) -> IMP::Ints
11947  """
11948  return _IMP_core.ConstantTripletPredicate_get_value_index(self, *args)
11949 
11950 
11951  def get_version_info(self):
11952  """get_version_info(ConstantTripletPredicate self) -> VersionInfo"""
11953  return _IMP_core.ConstantTripletPredicate_get_version_info(self)
11954 
11955 
11956  def __str__(self):
11957  """__str__(ConstantTripletPredicate self) -> std::string"""
11958  return _IMP_core.ConstantTripletPredicate___str__(self)
11959 
11960 
11961  def __repr__(self):
11962  """__repr__(ConstantTripletPredicate self) -> std::string"""
11963  return _IMP_core.ConstantTripletPredicate___repr__(self)
11964 
11965 
11966  @staticmethod
11967  def get_from(o):
11968  return _object_cast_to_ConstantTripletPredicate(o)
11969 
11970 ConstantTripletPredicate_swigregister = _IMP_core.ConstantTripletPredicate_swigregister
11971 ConstantTripletPredicate_swigregister(ConstantTripletPredicate)
11972 
11973 class UnorderedTypeTripletPredicate(IMP.TripletPredicate):
11974  """Proxy of C++ IMP::core::UnorderedTypeTripletPredicate class."""
11975 
11976  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
11977 
11978  def __init__(self, *args):
11979  """
11980  __init__(IMP::core::UnorderedTypeTripletPredicate self, std::string name) -> UnorderedTypeTripletPredicate
11981  __init__(IMP::core::UnorderedTypeTripletPredicate self) -> UnorderedTypeTripletPredicate
11982  """
11983  this = _IMP_core.new_UnorderedTypeTripletPredicate(*args)
11984  try:
11985  self.this.append(this)
11986  except __builtin__.Exception:
11987  self.this = this
11988 
11989  def do_get_inputs(self, m, pis):
11990  """do_get_inputs(UnorderedTypeTripletPredicate self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
11991  return _IMP_core.UnorderedTypeTripletPredicate_do_get_inputs(self, m, pis)
11992 
11993 
11994  def get_value(self, *args):
11995  """
11996  get_value(UnorderedTypeTripletPredicate self, IMP::ParticleTriplet const & a) -> int
11997  get_value(UnorderedTypeTripletPredicate self, IMP::ParticleTripletsTemp const & o) -> IMP::Ints
11998  """
11999  return _IMP_core.UnorderedTypeTripletPredicate_get_value(self, *args)
12000 
12001 
12002  def get_value_index(self, *args):
12003  """
12004  get_value_index(UnorderedTypeTripletPredicate self, Model m, IMP::ParticleIndexTriplet const & pi) -> int
12005  get_value_index(UnorderedTypeTripletPredicate self, Model m, IMP::ParticleIndexTriplets const & o) -> IMP::Ints
12006  """
12007  return _IMP_core.UnorderedTypeTripletPredicate_get_value_index(self, *args)
12008 
12009 
12010  def get_version_info(self):
12011  """get_version_info(UnorderedTypeTripletPredicate self) -> VersionInfo"""
12012  return _IMP_core.UnorderedTypeTripletPredicate_get_version_info(self)
12013 
12014 
12015  def __str__(self):
12016  """__str__(UnorderedTypeTripletPredicate self) -> std::string"""
12017  return _IMP_core.UnorderedTypeTripletPredicate___str__(self)
12018 
12019 
12020  def __repr__(self):
12021  """__repr__(UnorderedTypeTripletPredicate self) -> std::string"""
12022  return _IMP_core.UnorderedTypeTripletPredicate___repr__(self)
12023 
12024 
12025  @staticmethod
12026  def get_from(o):
12027  return _object_cast_to_UnorderedTypeTripletPredicate(o)
12028 
12029 UnorderedTypeTripletPredicate_swigregister = _IMP_core.UnorderedTypeTripletPredicate_swigregister
12030 UnorderedTypeTripletPredicate_swigregister(UnorderedTypeTripletPredicate)
12031 
12032 class OrderedTypeTripletPredicate(IMP.TripletPredicate):
12033  """Proxy of C++ IMP::core::OrderedTypeTripletPredicate class."""
12034 
12035  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
12036 
12037  def __init__(self, *args):
12038  """
12039  __init__(IMP::core::OrderedTypeTripletPredicate self, std::string name) -> OrderedTypeTripletPredicate
12040  __init__(IMP::core::OrderedTypeTripletPredicate self) -> OrderedTypeTripletPredicate
12041  """
12042  this = _IMP_core.new_OrderedTypeTripletPredicate(*args)
12043  try:
12044  self.this.append(this)
12045  except __builtin__.Exception:
12046  self.this = this
12047 
12048  def do_get_inputs(self, m, pis):
12049  """do_get_inputs(OrderedTypeTripletPredicate self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
12050  return _IMP_core.OrderedTypeTripletPredicate_do_get_inputs(self, m, pis)
12051 
12052 
12053  def get_value(self, *args):
12054  """
12055  get_value(OrderedTypeTripletPredicate self, IMP::core::ParticleTypes const & types) -> int
12056  get_value(OrderedTypeTripletPredicate self, IMP::ParticleTriplet const & a) -> int
12057  get_value(OrderedTypeTripletPredicate self, IMP::ParticleTripletsTemp const & o) -> IMP::Ints
12058  """
12059  return _IMP_core.OrderedTypeTripletPredicate_get_value(self, *args)
12060 
12061 
12062  def get_value_index(self, *args):
12063  """
12064  get_value_index(OrderedTypeTripletPredicate self, Model m, IMP::ParticleIndexTriplet const & pi) -> int
12065  get_value_index(OrderedTypeTripletPredicate self, Model m, IMP::ParticleIndexTriplets const & o) -> IMP::Ints
12066  """
12067  return _IMP_core.OrderedTypeTripletPredicate_get_value_index(self, *args)
12068 
12069 
12070  def get_version_info(self):
12071  """get_version_info(OrderedTypeTripletPredicate self) -> VersionInfo"""
12072  return _IMP_core.OrderedTypeTripletPredicate_get_version_info(self)
12073 
12074 
12075  def __str__(self):
12076  """__str__(OrderedTypeTripletPredicate self) -> std::string"""
12077  return _IMP_core.OrderedTypeTripletPredicate___str__(self)
12078 
12079 
12080  def __repr__(self):
12081  """__repr__(OrderedTypeTripletPredicate self) -> std::string"""
12082  return _IMP_core.OrderedTypeTripletPredicate___repr__(self)
12083 
12084 
12085  @staticmethod
12086  def get_from(o):
12087  return _object_cast_to_OrderedTypeTripletPredicate(o)
12088 
12089 OrderedTypeTripletPredicate_swigregister = _IMP_core.OrderedTypeTripletPredicate_swigregister
12090 OrderedTypeTripletPredicate_swigregister(OrderedTypeTripletPredicate)
12091 
12092 class AllSameTripletPredicate(IMP.TripletPredicate):
12093  """Proxy of C++ IMP::core::AllSameTripletPredicate class."""
12094 
12095  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
12096 
12097  def __init__(self, *args):
12098  """
12099  __init__(IMP::core::AllSameTripletPredicate self, std::string name) -> AllSameTripletPredicate
12100  __init__(IMP::core::AllSameTripletPredicate self) -> AllSameTripletPredicate
12101  """
12102  this = _IMP_core.new_AllSameTripletPredicate(*args)
12103  try:
12104  self.this.append(this)
12105  except __builtin__.Exception:
12106  self.this = this
12107 
12108  def do_get_inputs(self, arg2, arg3):
12109  """do_get_inputs(AllSameTripletPredicate self, Model arg2, IMP::ParticleIndexes const & arg3) -> IMP::ModelObjectsTemp"""
12110  return _IMP_core.AllSameTripletPredicate_do_get_inputs(self, arg2, arg3)
12111 
12112 
12113  def get_value(self, *args):
12114  """
12115  get_value(AllSameTripletPredicate self, IMP::ParticleTriplet const & a) -> int
12116  get_value(AllSameTripletPredicate self, IMP::ParticleTripletsTemp const & o) -> IMP::Ints
12117  """
12118  return _IMP_core.AllSameTripletPredicate_get_value(self, *args)
12119 
12120 
12121  def get_value_index(self, *args):
12122  """
12123  get_value_index(AllSameTripletPredicate self, Model m, IMP::ParticleIndexTriplet const & pi) -> int
12124  get_value_index(AllSameTripletPredicate self, Model m, IMP::ParticleIndexTriplets const & o) -> IMP::Ints
12125  """
12126  return _IMP_core.AllSameTripletPredicate_get_value_index(self, *args)
12127 
12128 
12129  def get_version_info(self):
12130  """get_version_info(AllSameTripletPredicate self) -> VersionInfo"""
12131  return _IMP_core.AllSameTripletPredicate_get_version_info(self)
12132 
12133 
12134  def __str__(self):
12135  """__str__(AllSameTripletPredicate self) -> std::string"""
12136  return _IMP_core.AllSameTripletPredicate___str__(self)
12137 
12138 
12139  def __repr__(self):
12140  """__repr__(AllSameTripletPredicate self) -> std::string"""
12141  return _IMP_core.AllSameTripletPredicate___repr__(self)
12142 
12143 
12144  @staticmethod
12145  def get_from(o):
12146  return _object_cast_to_AllSameTripletPredicate(o)
12147 
12148 AllSameTripletPredicate_swigregister = _IMP_core.AllSameTripletPredicate_swigregister
12149 AllSameTripletPredicate_swigregister(AllSameTripletPredicate)
12150 
12151 class CoinFlipTripletPredicate(IMP.TripletPredicate):
12152  """Proxy of C++ IMP::core::CoinFlipTripletPredicate class."""
12153 
12154  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
12155 
12156  def __init__(self, *args):
12157  """
12158  __init__(IMP::core::CoinFlipTripletPredicate self, double p, std::string name) -> CoinFlipTripletPredicate
12159  __init__(IMP::core::CoinFlipTripletPredicate self, double p) -> CoinFlipTripletPredicate
12160  """
12161  this = _IMP_core.new_CoinFlipTripletPredicate(*args)
12162  try:
12163  self.this.append(this)
12164  except __builtin__.Exception:
12165  self.this = this
12166 
12167  def do_get_inputs(self, arg2, arg3):
12168  """do_get_inputs(CoinFlipTripletPredicate self, Model arg2, IMP::ParticleIndexes const & arg3) -> IMP::ModelObjectsTemp"""
12169  return _IMP_core.CoinFlipTripletPredicate_do_get_inputs(self, arg2, arg3)
12170 
12171 
12172  def get_value(self, *args):
12173  """
12174  get_value(CoinFlipTripletPredicate self, IMP::ParticleTriplet const & a) -> int
12175  get_value(CoinFlipTripletPredicate self, IMP::ParticleTripletsTemp const & o) -> IMP::Ints
12176  """
12177  return _IMP_core.CoinFlipTripletPredicate_get_value(self, *args)
12178 
12179 
12180  def get_value_index(self, *args):
12181  """
12182  get_value_index(CoinFlipTripletPredicate self, Model arg2, IMP::ParticleIndexTriplet const & arg3) -> int
12183  get_value_index(CoinFlipTripletPredicate self, Model m, IMP::ParticleIndexTriplets const & o) -> IMP::Ints
12184  """
12185  return _IMP_core.CoinFlipTripletPredicate_get_value_index(self, *args)
12186 
12187 
12188  def get_version_info(self):
12189  """get_version_info(CoinFlipTripletPredicate self) -> VersionInfo"""
12190  return _IMP_core.CoinFlipTripletPredicate_get_version_info(self)
12191 
12192 
12193  def __str__(self):
12194  """__str__(CoinFlipTripletPredicate self) -> std::string"""
12195  return _IMP_core.CoinFlipTripletPredicate___str__(self)
12196 
12197 
12198  def __repr__(self):
12199  """__repr__(CoinFlipTripletPredicate self) -> std::string"""
12200  return _IMP_core.CoinFlipTripletPredicate___repr__(self)
12201 
12202 
12203  @staticmethod
12204  def get_from(o):
12205  return _object_cast_to_CoinFlipTripletPredicate(o)
12206 
12207 CoinFlipTripletPredicate_swigregister = _IMP_core.CoinFlipTripletPredicate_swigregister
12208 CoinFlipTripletPredicate_swigregister(CoinFlipTripletPredicate)
12209 
12210 class ConstantQuadPredicate(IMP.QuadPredicate):
12211  """Proxy of C++ IMP::core::ConstantQuadPredicate class."""
12212 
12213  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
12214 
12215  def __init__(self, *args):
12216  """
12217  __init__(IMP::core::ConstantQuadPredicate self, int v, std::string name) -> ConstantQuadPredicate
12218  __init__(IMP::core::ConstantQuadPredicate self, int v) -> ConstantQuadPredicate
12219  """
12220  this = _IMP_core.new_ConstantQuadPredicate(*args)
12221  try:
12222  self.this.append(this)
12223  except __builtin__.Exception:
12224  self.this = this
12225 
12226  def do_get_inputs(self, arg2, arg3):
12227  """do_get_inputs(ConstantQuadPredicate self, Model arg2, IMP::ParticleIndexes const & arg3) -> IMP::ModelObjectsTemp"""
12228  return _IMP_core.ConstantQuadPredicate_do_get_inputs(self, arg2, arg3)
12229 
12230 
12231  def get_value(self, *args):
12232  """
12233  get_value(ConstantQuadPredicate self, IMP::ParticleQuad const & a) -> int
12234  get_value(ConstantQuadPredicate self, IMP::ParticleQuadsTemp const & o) -> IMP::Ints
12235  """
12236  return _IMP_core.ConstantQuadPredicate_get_value(self, *args)
12237 
12238 
12239  def get_value_index(self, *args):
12240  """
12241  get_value_index(ConstantQuadPredicate self, Model arg2, IMP::ParticleIndexQuad const & arg3) -> int
12242  get_value_index(ConstantQuadPredicate self, Model m, IMP::ParticleIndexQuads const & o) -> IMP::Ints
12243  """
12244  return _IMP_core.ConstantQuadPredicate_get_value_index(self, *args)
12245 
12246 
12247  def get_version_info(self):
12248  """get_version_info(ConstantQuadPredicate self) -> VersionInfo"""
12249  return _IMP_core.ConstantQuadPredicate_get_version_info(self)
12250 
12251 
12252  def __str__(self):
12253  """__str__(ConstantQuadPredicate self) -> std::string"""
12254  return _IMP_core.ConstantQuadPredicate___str__(self)
12255 
12256 
12257  def __repr__(self):
12258  """__repr__(ConstantQuadPredicate self) -> std::string"""
12259  return _IMP_core.ConstantQuadPredicate___repr__(self)
12260 
12261 
12262  @staticmethod
12263  def get_from(o):
12264  return _object_cast_to_ConstantQuadPredicate(o)
12265 
12266 ConstantQuadPredicate_swigregister = _IMP_core.ConstantQuadPredicate_swigregister
12267 ConstantQuadPredicate_swigregister(ConstantQuadPredicate)
12268 
12269 class UnorderedTypeQuadPredicate(IMP.QuadPredicate):
12270  """Proxy of C++ IMP::core::UnorderedTypeQuadPredicate class."""
12271 
12272  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
12273 
12274  def __init__(self, *args):
12275  """
12276  __init__(IMP::core::UnorderedTypeQuadPredicate self, std::string name) -> UnorderedTypeQuadPredicate
12277  __init__(IMP::core::UnorderedTypeQuadPredicate self) -> UnorderedTypeQuadPredicate
12278  """
12279  this = _IMP_core.new_UnorderedTypeQuadPredicate(*args)
12280  try:
12281  self.this.append(this)
12282  except __builtin__.Exception:
12283  self.this = this
12284 
12285  def do_get_inputs(self, m, pis):
12286  """do_get_inputs(UnorderedTypeQuadPredicate self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
12287  return _IMP_core.UnorderedTypeQuadPredicate_do_get_inputs(self, m, pis)
12288 
12289 
12290  def get_value(self, *args):
12291  """
12292  get_value(UnorderedTypeQuadPredicate self, IMP::ParticleQuad const & a) -> int
12293  get_value(UnorderedTypeQuadPredicate self, IMP::ParticleQuadsTemp const & o) -> IMP::Ints
12294  """
12295  return _IMP_core.UnorderedTypeQuadPredicate_get_value(self, *args)
12296 
12297 
12298  def get_value_index(self, *args):
12299  """
12300  get_value_index(UnorderedTypeQuadPredicate self, Model m, IMP::ParticleIndexQuad const & pi) -> int
12301  get_value_index(UnorderedTypeQuadPredicate self, Model m, IMP::ParticleIndexQuads const & o) -> IMP::Ints
12302  """
12303  return _IMP_core.UnorderedTypeQuadPredicate_get_value_index(self, *args)
12304 
12305 
12306  def get_version_info(self):
12307  """get_version_info(UnorderedTypeQuadPredicate self) -> VersionInfo"""
12308  return _IMP_core.UnorderedTypeQuadPredicate_get_version_info(self)
12309 
12310 
12311  def __str__(self):
12312  """__str__(UnorderedTypeQuadPredicate self) -> std::string"""
12313  return _IMP_core.UnorderedTypeQuadPredicate___str__(self)
12314 
12315 
12316  def __repr__(self):
12317  """__repr__(UnorderedTypeQuadPredicate self) -> std::string"""
12318  return _IMP_core.UnorderedTypeQuadPredicate___repr__(self)
12319 
12320 
12321  @staticmethod
12322  def get_from(o):
12323  return _object_cast_to_UnorderedTypeQuadPredicate(o)
12324 
12325 UnorderedTypeQuadPredicate_swigregister = _IMP_core.UnorderedTypeQuadPredicate_swigregister
12326 UnorderedTypeQuadPredicate_swigregister(UnorderedTypeQuadPredicate)
12327 
12328 class OrderedTypeQuadPredicate(IMP.QuadPredicate):
12329  """Proxy of C++ IMP::core::OrderedTypeQuadPredicate class."""
12330 
12331  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
12332 
12333  def __init__(self, *args):
12334  """
12335  __init__(IMP::core::OrderedTypeQuadPredicate self, std::string name) -> OrderedTypeQuadPredicate
12336  __init__(IMP::core::OrderedTypeQuadPredicate self) -> OrderedTypeQuadPredicate
12337  """
12338  this = _IMP_core.new_OrderedTypeQuadPredicate(*args)
12339  try:
12340  self.this.append(this)
12341  except __builtin__.Exception:
12342  self.this = this
12343 
12344  def do_get_inputs(self, m, pis):
12345  """do_get_inputs(OrderedTypeQuadPredicate self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
12346  return _IMP_core.OrderedTypeQuadPredicate_do_get_inputs(self, m, pis)
12347 
12348 
12349  def get_value(self, *args):
12350  """
12351  get_value(OrderedTypeQuadPredicate self, IMP::core::ParticleTypes const & types) -> int
12352  get_value(OrderedTypeQuadPredicate self, IMP::ParticleQuad const & a) -> int
12353  get_value(OrderedTypeQuadPredicate self, IMP::ParticleQuadsTemp const & o) -> IMP::Ints
12354  """
12355  return _IMP_core.OrderedTypeQuadPredicate_get_value(self, *args)
12356 
12357 
12358  def get_value_index(self, *args):
12359  """
12360  get_value_index(OrderedTypeQuadPredicate self, Model m, IMP::ParticleIndexQuad const & pi) -> int
12361  get_value_index(OrderedTypeQuadPredicate self, Model m, IMP::ParticleIndexQuads const & o) -> IMP::Ints
12362  """
12363  return _IMP_core.OrderedTypeQuadPredicate_get_value_index(self, *args)
12364 
12365 
12366  def get_version_info(self):
12367  """get_version_info(OrderedTypeQuadPredicate self) -> VersionInfo"""
12368  return _IMP_core.OrderedTypeQuadPredicate_get_version_info(self)
12369 
12370 
12371  def __str__(self):
12372  """__str__(OrderedTypeQuadPredicate self) -> std::string"""
12373  return _IMP_core.OrderedTypeQuadPredicate___str__(self)
12374 
12375 
12376  def __repr__(self):
12377  """__repr__(OrderedTypeQuadPredicate self) -> std::string"""
12378  return _IMP_core.OrderedTypeQuadPredicate___repr__(self)
12379 
12380 
12381  @staticmethod
12382  def get_from(o):
12383  return _object_cast_to_OrderedTypeQuadPredicate(o)
12384 
12385 OrderedTypeQuadPredicate_swigregister = _IMP_core.OrderedTypeQuadPredicate_swigregister
12386 OrderedTypeQuadPredicate_swigregister(OrderedTypeQuadPredicate)
12387 
12388 class AllSameQuadPredicate(IMP.QuadPredicate):
12389  """Proxy of C++ IMP::core::AllSameQuadPredicate class."""
12390 
12391  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
12392 
12393  def __init__(self, *args):
12394  """
12395  __init__(IMP::core::AllSameQuadPredicate self, std::string name) -> AllSameQuadPredicate
12396  __init__(IMP::core::AllSameQuadPredicate self) -> AllSameQuadPredicate
12397  """
12398  this = _IMP_core.new_AllSameQuadPredicate(*args)
12399  try:
12400  self.this.append(this)
12401  except __builtin__.Exception:
12402  self.this = this
12403 
12404  def do_get_inputs(self, arg2, arg3):
12405  """do_get_inputs(AllSameQuadPredicate self, Model arg2, IMP::ParticleIndexes const & arg3) -> IMP::ModelObjectsTemp"""
12406  return _IMP_core.AllSameQuadPredicate_do_get_inputs(self, arg2, arg3)
12407 
12408 
12409  def get_value(self, *args):
12410  """
12411  get_value(AllSameQuadPredicate self, IMP::ParticleQuad const & a) -> int
12412  get_value(AllSameQuadPredicate self, IMP::ParticleQuadsTemp const & o) -> IMP::Ints
12413  """
12414  return _IMP_core.AllSameQuadPredicate_get_value(self, *args)
12415 
12416 
12417  def get_value_index(self, *args):
12418  """
12419  get_value_index(AllSameQuadPredicate self, Model m, IMP::ParticleIndexQuad const & pi) -> int
12420  get_value_index(AllSameQuadPredicate self, Model m, IMP::ParticleIndexQuads const & o) -> IMP::Ints
12421  """
12422  return _IMP_core.AllSameQuadPredicate_get_value_index(self, *args)
12423 
12424 
12425  def get_version_info(self):
12426  """get_version_info(AllSameQuadPredicate self) -> VersionInfo"""
12427  return _IMP_core.AllSameQuadPredicate_get_version_info(self)
12428 
12429 
12430  def __str__(self):
12431  """__str__(AllSameQuadPredicate self) -> std::string"""
12432  return _IMP_core.AllSameQuadPredicate___str__(self)
12433 
12434 
12435  def __repr__(self):
12436  """__repr__(AllSameQuadPredicate self) -> std::string"""
12437  return _IMP_core.AllSameQuadPredicate___repr__(self)
12438 
12439 
12440  @staticmethod
12441  def get_from(o):
12442  return _object_cast_to_AllSameQuadPredicate(o)
12443 
12444 AllSameQuadPredicate_swigregister = _IMP_core.AllSameQuadPredicate_swigregister
12445 AllSameQuadPredicate_swigregister(AllSameQuadPredicate)
12446 
12447 class CoinFlipQuadPredicate(IMP.QuadPredicate):
12448  """Proxy of C++ IMP::core::CoinFlipQuadPredicate class."""
12449 
12450  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
12451 
12452  def __init__(self, *args):
12453  """
12454  __init__(IMP::core::CoinFlipQuadPredicate self, double p, std::string name) -> CoinFlipQuadPredicate
12455  __init__(IMP::core::CoinFlipQuadPredicate self, double p) -> CoinFlipQuadPredicate
12456  """
12457  this = _IMP_core.new_CoinFlipQuadPredicate(*args)
12458  try:
12459  self.this.append(this)
12460  except __builtin__.Exception:
12461  self.this = this
12462 
12463  def do_get_inputs(self, arg2, arg3):
12464  """do_get_inputs(CoinFlipQuadPredicate self, Model arg2, IMP::ParticleIndexes const & arg3) -> IMP::ModelObjectsTemp"""
12465  return _IMP_core.CoinFlipQuadPredicate_do_get_inputs(self, arg2, arg3)
12466 
12467 
12468  def get_value(self, *args):
12469  """
12470  get_value(CoinFlipQuadPredicate self, IMP::ParticleQuad const & a) -> int
12471  get_value(CoinFlipQuadPredicate self, IMP::ParticleQuadsTemp const & o) -> IMP::Ints
12472  """
12473  return _IMP_core.CoinFlipQuadPredicate_get_value(self, *args)
12474 
12475 
12476  def get_value_index(self, *args):
12477  """
12478  get_value_index(CoinFlipQuadPredicate self, Model arg2, IMP::ParticleIndexQuad const & arg3) -> int
12479  get_value_index(CoinFlipQuadPredicate self, Model m, IMP::ParticleIndexQuads const & o) -> IMP::Ints
12480  """
12481  return _IMP_core.CoinFlipQuadPredicate_get_value_index(self, *args)
12482 
12483 
12484  def get_version_info(self):
12485  """get_version_info(CoinFlipQuadPredicate self) -> VersionInfo"""
12486  return _IMP_core.CoinFlipQuadPredicate_get_version_info(self)
12487 
12488 
12489  def __str__(self):
12490  """__str__(CoinFlipQuadPredicate self) -> std::string"""
12491  return _IMP_core.CoinFlipQuadPredicate___str__(self)
12492 
12493 
12494  def __repr__(self):
12495  """__repr__(CoinFlipQuadPredicate self) -> std::string"""
12496  return _IMP_core.CoinFlipQuadPredicate___repr__(self)
12497 
12498 
12499  @staticmethod
12500  def get_from(o):
12501  return _object_cast_to_CoinFlipQuadPredicate(o)
12502 
12503 CoinFlipQuadPredicate_swigregister = _IMP_core.CoinFlipQuadPredicate_swigregister
12504 CoinFlipQuadPredicate_swigregister(CoinFlipQuadPredicate)
12505 
12506 class InBoundingBox3DSingletonPredicate(IMP.SingletonPredicate):
12507  """Proxy of C++ IMP::core::InBoundingBox3DSingletonPredicate class."""
12508 
12509  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
12510 
12511  def __init__(self, *args):
12512  """
12513  __init__(IMP::core::InBoundingBox3DSingletonPredicate self, BoundingBox3D bb, std::string name) -> InBoundingBox3DSingletonPredicate
12514  __init__(IMP::core::InBoundingBox3DSingletonPredicate self, BoundingBox3D bb) -> InBoundingBox3DSingletonPredicate
12515  """
12516  this = _IMP_core.new_InBoundingBox3DSingletonPredicate(*args)
12517  try:
12518  self.this.append(this)
12519  except __builtin__.Exception:
12520  self.this = this
12521 
12522  def do_get_inputs(self, m, pi):
12523  """do_get_inputs(InBoundingBox3DSingletonPredicate self, Model m, IMP::ParticleIndexes const & pi) -> IMP::ModelObjectsTemp"""
12524  return _IMP_core.InBoundingBox3DSingletonPredicate_do_get_inputs(self, m, pi)
12525 
12526 
12527  def get_value(self, *args):
12528  """
12529  get_value(InBoundingBox3DSingletonPredicate self, Particle a) -> int
12530  get_value(InBoundingBox3DSingletonPredicate self, IMP::ParticlesTemp const & o) -> IMP::Ints
12531  """
12532  return _IMP_core.InBoundingBox3DSingletonPredicate_get_value(self, *args)
12533 
12534 
12535  def get_value_index(self, *args):
12536  """
12537  get_value_index(InBoundingBox3DSingletonPredicate self, Model m, ParticleIndex pi) -> int
12538  get_value_index(InBoundingBox3DSingletonPredicate self, Model m, IMP::ParticleIndexes const & o) -> IMP::Ints
12539  """
12540  return _IMP_core.InBoundingBox3DSingletonPredicate_get_value_index(self, *args)
12541 
12542 
12543  def get_version_info(self):
12544  """get_version_info(InBoundingBox3DSingletonPredicate self) -> VersionInfo"""
12545  return _IMP_core.InBoundingBox3DSingletonPredicate_get_version_info(self)
12546 
12547 
12548  def __str__(self):
12549  """__str__(InBoundingBox3DSingletonPredicate self) -> std::string"""
12550  return _IMP_core.InBoundingBox3DSingletonPredicate___str__(self)
12551 
12552 
12553  def __repr__(self):
12554  """__repr__(InBoundingBox3DSingletonPredicate self) -> std::string"""
12555  return _IMP_core.InBoundingBox3DSingletonPredicate___repr__(self)
12556 
12557 
12558  @staticmethod
12559  def get_from(o):
12560  return _object_cast_to_InBoundingBox3DSingletonPredicate(o)
12561 
12562 InBoundingBox3DSingletonPredicate_swigregister = _IMP_core.InBoundingBox3DSingletonPredicate_swigregister
12563 InBoundingBox3DSingletonPredicate_swigregister(InBoundingBox3DSingletonPredicate)
12564 
12565 class AttributeSingletonPredicate(IMP.SingletonPredicate):
12566  """Proxy of C++ IMP::core::AttributeSingletonPredicate class."""
12567 
12568  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
12569 
12570  def __init__(self, *args):
12571  """
12572  __init__(IMP::core::AttributeSingletonPredicate self, IntKey bb, std::string name) -> AttributeSingletonPredicate
12573  __init__(IMP::core::AttributeSingletonPredicate self, IntKey bb) -> AttributeSingletonPredicate
12574  """
12575  this = _IMP_core.new_AttributeSingletonPredicate(*args)
12576  try:
12577  self.this.append(this)
12578  except __builtin__.Exception:
12579  self.this = this
12580 
12581  def do_get_inputs(self, m, pi):
12582  """do_get_inputs(AttributeSingletonPredicate self, Model m, IMP::ParticleIndexes const & pi) -> IMP::ModelObjectsTemp"""
12583  return _IMP_core.AttributeSingletonPredicate_do_get_inputs(self, m, pi)
12584 
12585 
12586  def get_value(self, *args):
12587  """
12588  get_value(AttributeSingletonPredicate self, Particle a) -> int
12589  get_value(AttributeSingletonPredicate self, IMP::ParticlesTemp const & o) -> IMP::Ints
12590  """
12591  return _IMP_core.AttributeSingletonPredicate_get_value(self, *args)
12592 
12593 
12594  def get_value_index(self, *args):
12595  """
12596  get_value_index(AttributeSingletonPredicate self, Model m, ParticleIndex pi) -> int
12597  get_value_index(AttributeSingletonPredicate self, Model m, IMP::ParticleIndexes const & o) -> IMP::Ints
12598  """
12599  return _IMP_core.AttributeSingletonPredicate_get_value_index(self, *args)
12600 
12601 
12602  def get_version_info(self):
12603  """get_version_info(AttributeSingletonPredicate self) -> VersionInfo"""
12604  return _IMP_core.AttributeSingletonPredicate_get_version_info(self)
12605 
12606 
12607  def __str__(self):
12608  """__str__(AttributeSingletonPredicate self) -> std::string"""
12609  return _IMP_core.AttributeSingletonPredicate___str__(self)
12610 
12611 
12612  def __repr__(self):
12613  """__repr__(AttributeSingletonPredicate self) -> std::string"""
12614  return _IMP_core.AttributeSingletonPredicate___repr__(self)
12615 
12616 
12617  @staticmethod
12618  def get_from(o):
12619  return _object_cast_to_AttributeSingletonPredicate(o)
12620 
12621 AttributeSingletonPredicate_swigregister = _IMP_core.AttributeSingletonPredicate_swigregister
12622 AttributeSingletonPredicate_swigregister(AttributeSingletonPredicate)
12623 
12624 class IsCollisionPairPredicate(IMP.PairPredicate):
12625  """Proxy of C++ IMP::core::IsCollisionPairPredicate class."""
12626 
12627  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
12628 
12629  def __init__(self, *args):
12630  """
12631  __init__(IMP::core::IsCollisionPairPredicate self, std::string name) -> IsCollisionPairPredicate
12632  __init__(IMP::core::IsCollisionPairPredicate self) -> IsCollisionPairPredicate
12633  """
12634  this = _IMP_core.new_IsCollisionPairPredicate(*args)
12635  try:
12636  self.this.append(this)
12637  except __builtin__.Exception:
12638  self.this = this
12639 
12640  def do_get_inputs(self, m, pi):
12641  """do_get_inputs(IsCollisionPairPredicate self, Model m, IMP::ParticleIndexes const & pi) -> IMP::ModelObjectsTemp"""
12642  return _IMP_core.IsCollisionPairPredicate_do_get_inputs(self, m, pi)
12643 
12644 
12645  def get_value(self, *args):
12646  """
12647  get_value(IsCollisionPairPredicate self, IMP::ParticlePair const & a) -> int
12648  get_value(IsCollisionPairPredicate self, IMP::ParticlePairsTemp const & o) -> IMP::Ints
12649  """
12650  return _IMP_core.IsCollisionPairPredicate_get_value(self, *args)
12651 
12652 
12653  def get_value_index(self, *args):
12654  """
12655  get_value_index(IsCollisionPairPredicate self, Model m, IMP::ParticleIndexPair const & pi) -> int
12656  get_value_index(IsCollisionPairPredicate self, Model m, IMP::ParticleIndexPairs const & o) -> IMP::Ints
12657  """
12658  return _IMP_core.IsCollisionPairPredicate_get_value_index(self, *args)
12659 
12660 
12661  def get_version_info(self):
12662  """get_version_info(IsCollisionPairPredicate self) -> VersionInfo"""
12663  return _IMP_core.IsCollisionPairPredicate_get_version_info(self)
12664 
12665 
12666  def __str__(self):
12667  """__str__(IsCollisionPairPredicate self) -> std::string"""
12668  return _IMP_core.IsCollisionPairPredicate___str__(self)
12669 
12670 
12671  def __repr__(self):
12672  """__repr__(IsCollisionPairPredicate self) -> std::string"""
12673  return _IMP_core.IsCollisionPairPredicate___repr__(self)
12674 
12675 
12676  @staticmethod
12677  def get_from(o):
12678  return _object_cast_to_IsCollisionPairPredicate(o)
12679 
12680 IsCollisionPairPredicate_swigregister = _IMP_core.IsCollisionPairPredicate_swigregister
12681 IsCollisionPairPredicate_swigregister(IsCollisionPairPredicate)
12682 
12683 class AngleRestraint(TripletRestraint):
12684  """Proxy of C++ IMP::core::AngleRestraint class."""
12685 
12686  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
12687 
12688  def __init__(self, m, score_func, p1, p2, p3):
12689  """__init__(IMP::core::AngleRestraint self, Model m, UnaryFunction score_func, _ParticleIndexAdaptor p1, _ParticleIndexAdaptor p2, _ParticleIndexAdaptor p3) -> AngleRestraint"""
12690  this = _IMP_core.new_AngleRestraint(m, score_func, p1, p2, p3)
12691  try:
12692  self.this.append(this)
12693  except __builtin__.Exception:
12694  self.this = this
12695 
12696  def __str__(self):
12697  """__str__(AngleRestraint self) -> std::string"""
12698  return _IMP_core.AngleRestraint___str__(self)
12699 
12700 
12701  def __repr__(self):
12702  """__repr__(AngleRestraint self) -> std::string"""
12703  return _IMP_core.AngleRestraint___repr__(self)
12704 
12705 
12706  @staticmethod
12707  def get_from(o):
12708  return _object_cast_to_AngleRestraint(o)
12709 
12710 AngleRestraint_swigregister = _IMP_core.AngleRestraint_swigregister
12711 AngleRestraint_swigregister(AngleRestraint)
12712 
12713 class RigidBodyMover(MonteCarloMover):
12714  """Proxy of C++ IMP::core::RigidBodyMover class."""
12715 
12716  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
12717 
12718  def __init__(self, m, pi, max_translation, max_rotation):
12719  """__init__(IMP::core::RigidBodyMover self, Model m, ParticleIndex pi, IMP::Float max_translation, IMP::Float max_rotation) -> RigidBodyMover"""
12720  this = _IMP_core.new_RigidBodyMover(m, pi, max_translation, max_rotation)
12721  try:
12722  self.this.append(this)
12723  except __builtin__.Exception:
12724  self.this = this
12725 
12726  def set_maximum_translation(self, mt):
12727  """set_maximum_translation(RigidBodyMover self, IMP::Float mt)"""
12728  return _IMP_core.RigidBodyMover_set_maximum_translation(self, mt)
12729 
12730 
12731  def set_maximum_rotation(self, mr):
12732  """set_maximum_rotation(RigidBodyMover self, IMP::Float mr)"""
12733  return _IMP_core.RigidBodyMover_set_maximum_rotation(self, mr)
12734 
12735 
12736  def get_maximum_translation(self):
12737  """get_maximum_translation(RigidBodyMover self) -> IMP::Float"""
12738  return _IMP_core.RigidBodyMover_get_maximum_translation(self)
12739 
12740 
12741  def get_maximum_rotation(self):
12742  """get_maximum_rotation(RigidBodyMover self) -> IMP::Float"""
12743  return _IMP_core.RigidBodyMover_get_maximum_rotation(self)
12744 
12745 
12746  def get_version_info(self):
12747  """get_version_info(RigidBodyMover self) -> VersionInfo"""
12748  return _IMP_core.RigidBodyMover_get_version_info(self)
12749 
12750 
12751  def __str__(self):
12752  """__str__(RigidBodyMover self) -> std::string"""
12753  return _IMP_core.RigidBodyMover___str__(self)
12754 
12755 
12756  def __repr__(self):
12757  """__repr__(RigidBodyMover self) -> std::string"""
12758  return _IMP_core.RigidBodyMover___repr__(self)
12759 
12760 
12761  @staticmethod
12762  def get_from(o):
12763  return _object_cast_to_RigidBodyMover(o)
12764 
12765 RigidBodyMover_swigregister = _IMP_core.RigidBodyMover_swigregister
12766 RigidBodyMover_swigregister(RigidBodyMover)
12767 
12768 class RigidBodyTunneler(MonteCarloMover):
12769  """Proxy of C++ IMP::core::RigidBodyTunneler class."""
12770 
12771  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
12772 
12773  def __init__(self, m, pis, ref, k, move_probability=1.):
12774  """
12775  __init__(IMP::core::RigidBodyTunneler self, Model m, IMP::ParticleIndexes pis, ParticleIndex ref, double k, double move_probability=1.) -> RigidBodyTunneler
12776  __init__(IMP::core::RigidBodyTunneler self, Model m, IMP::ParticleIndexes pis, ParticleIndex ref, double k) -> RigidBodyTunneler
12777  """
12778  this = _IMP_core.new_RigidBodyTunneler(m, pis, ref, k, move_probability)
12779  try:
12780  self.this.append(this)
12781  except __builtin__.Exception:
12782  self.this = this
12783 
12784  def add_entry_point(self, fl):
12785  """add_entry_point(RigidBodyTunneler self, IMP::Floats fl)"""
12786  return _IMP_core.RigidBodyTunneler_add_entry_point(self, fl)
12787 
12788 
12789  def reset_stats(self):
12790  """reset_stats(RigidBodyTunneler self)"""
12791  return _IMP_core.RigidBodyTunneler_reset_stats(self)
12792 
12793 
12794  def get_number_of_rejected_moves(self):
12795  """get_number_of_rejected_moves(RigidBodyTunneler self) -> unsigned int"""
12796  return _IMP_core.RigidBodyTunneler_get_number_of_rejected_moves(self)
12797 
12798 
12799  def get_number_of_proposed_moves(self):
12800  """get_number_of_proposed_moves(RigidBodyTunneler self) -> unsigned int"""
12801  return _IMP_core.RigidBodyTunneler_get_number_of_proposed_moves(self)
12802 
12803 
12804  def get_number_of_impossible_moves(self):
12805  """get_number_of_impossible_moves(RigidBodyTunneler self) -> unsigned int"""
12806  return _IMP_core.RigidBodyTunneler_get_number_of_impossible_moves(self)
12807 
12808 
12809  def get_number_of_calls(self):
12810  """get_number_of_calls(RigidBodyTunneler self) -> unsigned int"""
12811  return _IMP_core.RigidBodyTunneler_get_number_of_calls(self)
12812 
12813 
12814  def get_reduced_coordinates(*args):
12815  """
12816  get_reduced_coordinates(Model m, ParticleIndex target, ParticleIndex ref) -> IMP::Floats
12817  get_reduced_coordinates(Model m, ParticleIndex pi) -> IMP::Floats
12818  """
12819  return _IMP_core.RigidBodyTunneler_get_reduced_coordinates(*args)
12820 
12821  get_reduced_coordinates = staticmethod(get_reduced_coordinates)
12822 
12823  def set_reduced_coordinates(m, target, ref, coords):
12824  """set_reduced_coordinates(Model m, ParticleIndex target, ParticleIndex ref, IMP::Floats coords)"""
12825  return _IMP_core.RigidBodyTunneler_set_reduced_coordinates(m, target, ref, coords)
12826 
12827  set_reduced_coordinates = staticmethod(set_reduced_coordinates)
12828 
12829  def get_version_info(self):
12830  """get_version_info(RigidBodyTunneler self) -> VersionInfo"""
12831  return _IMP_core.RigidBodyTunneler_get_version_info(self)
12832 
12833 
12834  def __str__(self):
12835  """__str__(RigidBodyTunneler self) -> std::string"""
12836  return _IMP_core.RigidBodyTunneler___str__(self)
12837 
12838 
12839  def __repr__(self):
12840  """__repr__(RigidBodyTunneler self) -> std::string"""
12841  return _IMP_core.RigidBodyTunneler___repr__(self)
12842 
12843 
12844  @staticmethod
12845  def get_from(o):
12846  return _object_cast_to_RigidBodyTunneler(o)
12847 
12848 RigidBodyTunneler_swigregister = _IMP_core.RigidBodyTunneler_swigregister
12849 RigidBodyTunneler_swigregister(RigidBodyTunneler)
12850 
12851 def RigidBodyTunneler_get_reduced_coordinates(*args):
12852  """
12853  get_reduced_coordinates(Model m, ParticleIndex target, ParticleIndex ref) -> IMP::Floats
12854  RigidBodyTunneler_get_reduced_coordinates(Model m, ParticleIndex pi) -> IMP::Floats
12855  """
12856  return _IMP_core.RigidBodyTunneler_get_reduced_coordinates(*args)
12857 
12858 def RigidBodyTunneler_set_reduced_coordinates(m, target, ref, coords):
12859  """RigidBodyTunneler_set_reduced_coordinates(Model m, ParticleIndex target, ParticleIndex ref, IMP::Floats coords)"""
12860  return _IMP_core.RigidBodyTunneler_set_reduced_coordinates(m, target, ref, coords)
12861 
12862 class RigidBodyUmbrella(IMP.Restraint):
12863  """Proxy of C++ IMP::core::RigidBodyUmbrella class."""
12864 
12865  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
12866 
12867  def __init__(self, *args):
12868  """
12869  __init__(IMP::core::RigidBodyUmbrella self, Model m, ParticleIndex pi, ParticleIndex ref, IMP::Floats x0, double alpha, double k, std::string name) -> RigidBodyUmbrella
12870  __init__(IMP::core::RigidBodyUmbrella self, Model m, ParticleIndex pi, ParticleIndex ref, IMP::Floats x0, double alpha, double k) -> RigidBodyUmbrella
12871  __init__(IMP::core::RigidBodyUmbrella self, Model m, ParticleIndex pi, ParticleIndex ref, double arg5, IMP::Floats x1, IMP::Floats x2, double alpha, double k, std::string name) -> RigidBodyUmbrella
12872  __init__(IMP::core::RigidBodyUmbrella self, Model m, ParticleIndex pi, ParticleIndex ref, double arg5, IMP::Floats x1, IMP::Floats x2, double alpha, double k) -> RigidBodyUmbrella
12873  """
12874  this = _IMP_core.new_RigidBodyUmbrella(*args)
12875  try:
12876  self.this.append(this)
12877  except __builtin__.Exception:
12878  self.this = this
12879 
12880  def set_x0(self, *args):
12881  """
12882  set_x0(RigidBodyUmbrella self, IMP::Floats x0)
12883  set_x0(RigidBodyUmbrella self, double arg2, IMP::Floats x1, IMP::Floats x2)
12884  """
12885  return _IMP_core.RigidBodyUmbrella_set_x0(self, *args)
12886 
12887 
12888  def get_x0(self):
12889  """get_x0(RigidBodyUmbrella self) -> IMP::Floats"""
12890  return _IMP_core.RigidBodyUmbrella_get_x0(self)
12891 
12892 
12893  def get_x(self):
12894  """get_x(RigidBodyUmbrella self) -> IMP::Floats"""
12895  return _IMP_core.RigidBodyUmbrella_get_x(self)
12896 
12897 
12898  def set_alpha(self, alpha):
12899  """set_alpha(RigidBodyUmbrella self, double alpha)"""
12900  return _IMP_core.RigidBodyUmbrella_set_alpha(self, alpha)
12901 
12902 
12903  def set_k(self, k):
12904  """set_k(RigidBodyUmbrella self, double k)"""
12905  return _IMP_core.RigidBodyUmbrella_set_k(self, k)
12906 
12907 
12908  def get_version_info(self):
12909  """get_version_info(RigidBodyUmbrella self) -> VersionInfo"""
12910  return _IMP_core.RigidBodyUmbrella_get_version_info(self)
12911 
12912 
12913  def __str__(self):
12914  """__str__(RigidBodyUmbrella self) -> std::string"""
12915  return _IMP_core.RigidBodyUmbrella___str__(self)
12916 
12917 
12918  def __repr__(self):
12919  """__repr__(RigidBodyUmbrella self) -> std::string"""
12920  return _IMP_core.RigidBodyUmbrella___repr__(self)
12921 
12922 
12923  @staticmethod
12924  def get_from(o):
12925  return _object_cast_to_RigidBodyUmbrella(o)
12926 
12927 RigidBodyUmbrella_swigregister = _IMP_core.RigidBodyUmbrella_swigregister
12928 RigidBodyUmbrella_swigregister(RigidBodyUmbrella)
12929 
12930 class VolumeRestraint(IMP.Restraint):
12931  """Proxy of C++ IMP::core::VolumeRestraint class."""
12932 
12933  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
12934 
12935  def __init__(self, f, sc, volume):
12936  """__init__(IMP::core::VolumeRestraint self, UnaryFunction f, SingletonContainer sc, double volume) -> VolumeRestraint"""
12937  this = _IMP_core.new_VolumeRestraint(f, sc, volume)
12938  try:
12939  self.this.append(this)
12940  except __builtin__.Exception:
12941  self.this = this
12942 
12943  def do_get_inputs(self):
12944  """do_get_inputs(VolumeRestraint self) -> IMP::ModelObjectsTemp"""
12945  return _IMP_core.VolumeRestraint_do_get_inputs(self)
12946 
12947 
12948  def get_version_info(self):
12949  """get_version_info(VolumeRestraint self) -> VersionInfo"""
12950  return _IMP_core.VolumeRestraint_get_version_info(self)
12951 
12952 
12953  def __str__(self):
12954  """__str__(VolumeRestraint self) -> std::string"""
12955  return _IMP_core.VolumeRestraint___str__(self)
12956 
12957 
12958  def __repr__(self):
12959  """__repr__(VolumeRestraint self) -> std::string"""
12960  return _IMP_core.VolumeRestraint___repr__(self)
12961 
12962 
12963  @staticmethod
12964  def get_from(o):
12965  return _object_cast_to_VolumeRestraint(o)
12966 
12967 VolumeRestraint_swigregister = _IMP_core.VolumeRestraint_swigregister
12968 VolumeRestraint_swigregister(VolumeRestraint)
12969 
12970 
12971 def get_centroid(ps):
12972  """get_centroid(IMP::core::XYZs const & ps) -> Vector3D"""
12973  return _IMP_core.get_centroid(ps)
12974 
12975 def get_bounding_box(ps):
12976  """get_bounding_box(IMP::core::XYZRs const & ps) -> BoundingBox3D"""
12977  return _IMP_core.get_bounding_box(ps)
12978 class MoveStatisticsScoreState(IMP.ScoreState):
12979  """Proxy of C++ IMP::core::MoveStatisticsScoreState class."""
12980 
12981  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
12982 
12983  def __init__(self, ps):
12984  """__init__(IMP::core::MoveStatisticsScoreState self, IMP::ParticlesTemp const & ps) -> MoveStatisticsScoreState"""
12985  this = _IMP_core.new_MoveStatisticsScoreState(ps)
12986  try:
12987  self.this.append(this)
12988  except __builtin__.Exception:
12989  self.this = this
12990 
12991  def show_statistics(self, *args):
12992  """
12993  show_statistics(MoveStatisticsScoreState self, _ostream out)
12994  show_statistics(MoveStatisticsScoreState self)
12995  """
12996  return _IMP_core.MoveStatisticsScoreState_show_statistics(self, *args)
12997 
12998 
12999  def reset(self):
13000  """reset(MoveStatisticsScoreState self)"""
13001  return _IMP_core.MoveStatisticsScoreState_reset(self)
13002 
13003 
13004  def do_before_evaluate(self):
13005  """do_before_evaluate(MoveStatisticsScoreState self)"""
13006  return _IMP_core.MoveStatisticsScoreState_do_before_evaluate(self)
13007 
13008 
13009  def do_after_evaluate(self, da):
13010  """do_after_evaluate(MoveStatisticsScoreState self, DerivativeAccumulator da)"""
13011  return _IMP_core.MoveStatisticsScoreState_do_after_evaluate(self, da)
13012 
13013 
13014  def do_get_inputs(self):
13015  """do_get_inputs(MoveStatisticsScoreState self) -> IMP::ModelObjectsTemp"""
13016  return _IMP_core.MoveStatisticsScoreState_do_get_inputs(self)
13017 
13018 
13019  def do_get_outputs(self):
13020  """do_get_outputs(MoveStatisticsScoreState self) -> IMP::ModelObjectsTemp"""
13021  return _IMP_core.MoveStatisticsScoreState_do_get_outputs(self)
13022 
13023 
13024  def get_version_info(self):
13025  """get_version_info(MoveStatisticsScoreState self) -> VersionInfo"""
13026  return _IMP_core.MoveStatisticsScoreState_get_version_info(self)
13027 
13028 
13029  def __str__(self):
13030  """__str__(MoveStatisticsScoreState self) -> std::string"""
13031  return _IMP_core.MoveStatisticsScoreState___str__(self)
13032 
13033 
13034  def __repr__(self):
13035  """__repr__(MoveStatisticsScoreState self) -> std::string"""
13036  return _IMP_core.MoveStatisticsScoreState___repr__(self)
13037 
13038 
13039  @staticmethod
13040  def get_from(o):
13041  return _object_cast_to_MoveStatisticsScoreState(o)
13042 
13043 MoveStatisticsScoreState_swigregister = _IMP_core.MoveStatisticsScoreState_swigregister
13044 MoveStatisticsScoreState_swigregister(MoveStatisticsScoreState)
13045 
13046 IMP_PARTICLE_TYPE_INDEX = _IMP_core.IMP_PARTICLE_TYPE_INDEX
13047 class Typed(IMP.Decorator):
13048  """Proxy of C++ IMP::core::Typed class."""
13049 
13050  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
13051 
13052  def get_type_key():
13053  """get_type_key() -> IntKey"""
13054  return _IMP_core.Typed_get_type_key()
13055 
13056  get_type_key = staticmethod(get_type_key)
13057 
13058  def __init__(self, *args):
13059  """
13060  __init__(IMP::core::Typed self) -> Typed
13061  __init__(IMP::core::Typed self, Model m, ParticleIndex id) -> Typed
13062  __init__(IMP::core::Typed self, _ParticleAdaptor d) -> Typed
13063  """
13064  this = _IMP_core.new_Typed(*args)
13065  try:
13066  self.this.append(this)
13067  except __builtin__.Exception:
13068  self.this = this
13069 
13070  def show(self, *args):
13071  """
13072  show(Typed self, _ostream out)
13073  show(Typed self)
13074  """
13075  return _IMP_core.Typed_show(self, *args)
13076 
13077 
13078  def setup_particle(*args):
13079  """
13080  setup_particle(Model m, ParticleIndex pi, ParticleType t) -> Typed
13081  setup_particle(_ParticleAdaptor decorator, ParticleType t) -> Typed
13082  """
13083  return _IMP_core.Typed_setup_particle(*args)
13084 
13085  setup_particle = staticmethod(setup_particle)
13086 
13087  def get_is_setup(*args):
13088  """
13089  get_is_setup(_ParticleAdaptor p) -> bool
13090  get_is_setup(Model m, ParticleIndex pi) -> bool
13091  """
13092  return _IMP_core.Typed_get_is_setup(*args)
13093 
13094  get_is_setup = staticmethod(get_is_setup)
13095 
13096  def get_type(self):
13097  """get_type(Typed self) -> ParticleType"""
13098  return _IMP_core.Typed_get_type(self)
13099 
13100 
13101  def set_type(self, pt):
13102  """set_type(Typed self, ParticleType pt)"""
13103  return _IMP_core.Typed_set_type(self, pt)
13104 
13105 
13106  def add_attribute(self, *args):
13107  """
13108  add_attribute(Typed self, FloatKey k, IMP::Float v, bool opt)
13109  add_attribute(Typed self, FloatKey a0, IMP::Float a1)
13110  add_attribute(Typed self, IntKey a0, IMP::Int a1)
13111  add_attribute(Typed self, StringKey a0, IMP::String a1)
13112  add_attribute(Typed self, ParticleIndexKey a0, Particle a1)
13113  add_attribute(Typed self, ObjectKey a0, Object a1)
13114  """
13115  return _IMP_core.Typed_add_attribute(self, *args)
13116 
13117 
13118  def get_value(self, *args):
13119  """
13120  get_value(Typed self, FloatKey a0) -> IMP::Float
13121  get_value(Typed self, IntKey a0) -> IMP::Int
13122  get_value(Typed self, StringKey a0) -> IMP::String
13123  get_value(Typed self, ParticleIndexKey a0) -> Particle
13124  get_value(Typed self, ObjectKey a0) -> Object
13125  """
13126  return _IMP_core.Typed_get_value(self, *args)
13127 
13128 
13129  def set_value(self, *args):
13130  """
13131  set_value(Typed self, FloatKey a0, IMP::Float a1)
13132  set_value(Typed self, IntKey a0, IMP::Int a1)
13133  set_value(Typed self, StringKey a0, IMP::String a1)
13134  set_value(Typed self, ParticleIndexKey a0, Particle a1)
13135  set_value(Typed self, ObjectKey a0, Object a1)
13136  """
13137  return _IMP_core.Typed_set_value(self, *args)
13138 
13139 
13140  def remove_attribute(self, *args):
13141  """
13142  remove_attribute(Typed self, FloatKey a0)
13143  remove_attribute(Typed self, IntKey a0)
13144  remove_attribute(Typed self, StringKey a0)
13145  remove_attribute(Typed self, ParticleIndexKey a0)
13146  remove_attribute(Typed self, ObjectKey a0)
13147  """
13148  return _IMP_core.Typed_remove_attribute(self, *args)
13149 
13150 
13151  def has_attribute(self, *args):
13152  """
13153  has_attribute(Typed self, FloatKey a0) -> bool
13154  has_attribute(Typed self, IntKey a0) -> bool
13155  has_attribute(Typed self, StringKey a0) -> bool
13156  has_attribute(Typed self, ParticleIndexKey a0) -> bool
13157  has_attribute(Typed self, ObjectKey a0) -> bool
13158  """
13159  return _IMP_core.Typed_has_attribute(self, *args)
13160 
13161 
13162  def get_derivative(self, a0):
13163  """get_derivative(Typed self, FloatKey a0) -> double"""
13164  return _IMP_core.Typed_get_derivative(self, a0)
13165 
13166 
13167  def get_name(self):
13168  """get_name(Typed self) -> std::string"""
13169  return _IMP_core.Typed_get_name(self)
13170 
13171 
13172  def clear_caches(self):
13173  """clear_caches(Typed self)"""
13174  return _IMP_core.Typed_clear_caches(self)
13175 
13176 
13177  def set_name(self, a0):
13178  """set_name(Typed self, std::string a0)"""
13179  return _IMP_core.Typed_set_name(self, a0)
13180 
13181 
13182  def set_check_level(self, a0):
13183  """set_check_level(Typed self, IMP::CheckLevel a0)"""
13184  return _IMP_core.Typed_set_check_level(self, a0)
13185 
13186 
13187  def add_to_derivative(self, a0, a1, a2):
13188  """add_to_derivative(Typed self, FloatKey a0, double a1, DerivativeAccumulator a2)"""
13189  return _IMP_core.Typed_add_to_derivative(self, a0, a1, a2)
13190 
13191 
13192  def set_is_optimized(self, a0, a1):
13193  """set_is_optimized(Typed self, FloatKey a0, bool a1)"""
13194  return _IMP_core.Typed_set_is_optimized(self, a0, a1)
13195 
13196 
13197  def get_is_optimized(self, a0):
13198  """get_is_optimized(Typed self, FloatKey a0) -> bool"""
13199  return _IMP_core.Typed_get_is_optimized(self, a0)
13200 
13201 
13202  def get_check_level(self):
13203  """get_check_level(Typed self) -> IMP::CheckLevel"""
13204  return _IMP_core.Typed_get_check_level(self)
13205 
13206 
13207  def __eq__(self, *args):
13208  """
13209  __eq__(Typed self, Typed o) -> bool
13210  __eq__(Typed self, Particle d) -> bool
13211  """
13212  return _IMP_core.Typed___eq__(self, *args)
13213 
13214 
13215  def __ne__(self, *args):
13216  """
13217  __ne__(Typed self, Typed o) -> bool
13218  __ne__(Typed self, Particle d) -> bool
13219  """
13220  return _IMP_core.Typed___ne__(self, *args)
13221 
13222 
13223  def __le__(self, *args):
13224  """
13225  __le__(Typed self, Typed o) -> bool
13226  __le__(Typed self, Particle d) -> bool
13227  """
13228  return _IMP_core.Typed___le__(self, *args)
13229 
13230 
13231  def __lt__(self, *args):
13232  """
13233  __lt__(Typed self, Typed o) -> bool
13234  __lt__(Typed self, Particle d) -> bool
13235  """
13236  return _IMP_core.Typed___lt__(self, *args)
13237 
13238 
13239  def __ge__(self, *args):
13240  """
13241  __ge__(Typed self, Typed o) -> bool
13242  __ge__(Typed self, Particle d) -> bool
13243  """
13244  return _IMP_core.Typed___ge__(self, *args)
13245 
13246 
13247  def __gt__(self, *args):
13248  """
13249  __gt__(Typed self, Typed o) -> bool
13250  __gt__(Typed self, Particle d) -> bool
13251  """
13252  return _IMP_core.Typed___gt__(self, *args)
13253 
13254 
13255  def __hash__(self):
13256  """__hash__(Typed self) -> std::size_t"""
13257  return _IMP_core.Typed___hash__(self)
13258 
13259 
13260  def __str__(self):
13261  """__str__(Typed self) -> std::string"""
13262  return _IMP_core.Typed___str__(self)
13263 
13264 
13265  def __repr__(self):
13266  """__repr__(Typed self) -> std::string"""
13267  return _IMP_core.Typed___repr__(self)
13268 
13269  __swig_destroy__ = _IMP_core.delete_Typed
13270  __del__ = lambda self: None
13271 Typed_swigregister = _IMP_core.Typed_swigregister
13272 Typed_swigregister(Typed)
13273 
13274 def Typed_get_type_key():
13275  """Typed_get_type_key() -> IntKey"""
13276  return _IMP_core.Typed_get_type_key()
13277 
13278 def Typed_setup_particle(*args):
13279  """
13280  setup_particle(Model m, ParticleIndex pi, ParticleType t) -> Typed
13281  Typed_setup_particle(_ParticleAdaptor decorator, ParticleType t) -> Typed
13282  """
13283  return _IMP_core.Typed_setup_particle(*args)
13284 
13285 def Typed_get_is_setup(*args):
13286  """
13287  get_is_setup(_ParticleAdaptor p) -> bool
13288  Typed_get_is_setup(Model m, ParticleIndex pi) -> bool
13289  """
13290  return _IMP_core.Typed_get_is_setup(*args)
13291 
13292 
13293 def __lshift__(*args):
13294  """
13295  __lshift__(_ostream out, XYZ n) -> _ostream
13296  __lshift__(_ostream out, XYZR n) -> _ostream
13297  __lshift__(_ostream out, Direction n) -> _ostream
13298  __lshift__(_ostream out, DirectionAngle n) -> _ostream
13299  __lshift__(_ostream out, Surface n) -> _ostream
13300  __lshift__(_ostream out, Centroid n) -> _ostream
13301  __lshift__(_ostream out, Cover n) -> _ostream
13302  __lshift__(_ostream out, Reference n) -> _ostream
13303  __lshift__(_ostream out, RigidMember n) -> _ostream
13304  __lshift__(_ostream out, RigidBody n) -> _ostream
13305  __lshift__(_ostream out, Gaussian n) -> _ostream
13306  __lshift__(_ostream out, Typed n) -> _ostream
13307  """
13308  return _IMP_core.__lshift__(*args)
13309 class WriteRestraintScoresOptimizerState(IMP.OptimizerState):
13310  """Proxy of C++ IMP::core::WriteRestraintScoresOptimizerState class."""
13311 
13312  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
13313 
13314  def __init__(self, rs, out):
13315  """__init__(IMP::core::WriteRestraintScoresOptimizerState self, IMP::Restraints const & rs, TextOutput out) -> WriteRestraintScoresOptimizerState"""
13316  this = _IMP_core.new_WriteRestraintScoresOptimizerState(rs, out)
13317  try:
13318  self.this.append(this)
13319  except __builtin__.Exception:
13320  self.this = this
13321 
13322  def get_version_info(self):
13323  """get_version_info(WriteRestraintScoresOptimizerState self) -> VersionInfo"""
13324  return _IMP_core.WriteRestraintScoresOptimizerState_get_version_info(self)
13325 
13326 
13327  def __str__(self):
13328  """__str__(WriteRestraintScoresOptimizerState self) -> std::string"""
13329  return _IMP_core.WriteRestraintScoresOptimizerState___str__(self)
13330 
13331 
13332  def __repr__(self):
13333  """__repr__(WriteRestraintScoresOptimizerState self) -> std::string"""
13334  return _IMP_core.WriteRestraintScoresOptimizerState___repr__(self)
13335 
13336 
13337  @staticmethod
13338  def get_from(o):
13339  return _object_cast_to_WriteRestraintScoresOptimizerState(o)
13340 
13341 WriteRestraintScoresOptimizerState_swigregister = _IMP_core.WriteRestraintScoresOptimizerState_swigregister
13342 WriteRestraintScoresOptimizerState_swigregister(WriteRestraintScoresOptimizerState)
13343 
13344 
13345 def assign_blame(rs, ps, attribute):
13346  """assign_blame(IMP::RestraintsTemp const & rs, IMP::ParticlesTemp const & ps, FloatKey attribute)"""
13347  return _IMP_core.assign_blame(rs, ps, attribute)
13348 
13349 def create_blame_geometries(*args):
13350  """
13351  create_blame_geometries(IMP::RestraintsTemp const & rs, IMP::ParticlesTemp const & ps, double max, std::string name) -> IMP::display::Geometries
13352  create_blame_geometries(IMP::RestraintsTemp const & rs, IMP::ParticlesTemp const & ps, double max) -> IMP::display::Geometries
13353  create_blame_geometries(IMP::RestraintsTemp const & rs, IMP::ParticlesTemp const & ps) -> IMP::display::Geometries
13354  """
13355  return _IMP_core.create_blame_geometries(*args)
13356 class MultipleBinormalRestraint(IMP.Restraint):
13357  """Proxy of C++ IMP::core::MultipleBinormalRestraint class."""
13358 
13359  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
13360 
13361  def __init__(self, m, q1, q2):
13362  """__init__(IMP::core::MultipleBinormalRestraint self, Model m, IMP::ParticleIndexQuad const & q1, IMP::ParticleIndexQuad const & q2) -> MultipleBinormalRestraint"""
13363  this = _IMP_core.new_MultipleBinormalRestraint(m, q1, q2)
13364  try:
13365  self.this.append(this)
13366  except __builtin__.Exception:
13367  self.this = this
13368 
13369  def add_term(self, term):
13370  """add_term(MultipleBinormalRestraint self, BinormalTerm term)"""
13371  return _IMP_core.MultipleBinormalRestraint_add_term(self, term)
13372 
13373 
13374  def do_get_inputs(self):
13375  """do_get_inputs(MultipleBinormalRestraint self) -> IMP::ModelObjectsTemp"""
13376  return _IMP_core.MultipleBinormalRestraint_do_get_inputs(self)
13377 
13378 
13379  def get_version_info(self):
13380  """get_version_info(MultipleBinormalRestraint self) -> VersionInfo"""
13381  return _IMP_core.MultipleBinormalRestraint_get_version_info(self)
13382 
13383 
13384  def __str__(self):
13385  """__str__(MultipleBinormalRestraint self) -> std::string"""
13386  return _IMP_core.MultipleBinormalRestraint___str__(self)
13387 
13388 
13389  def __repr__(self):
13390  """__repr__(MultipleBinormalRestraint self) -> std::string"""
13391  return _IMP_core.MultipleBinormalRestraint___repr__(self)
13392 
13393 
13394  @staticmethod
13395  def get_from(o):
13396  return _object_cast_to_MultipleBinormalRestraint(o)
13397 
13398 MultipleBinormalRestraint_swigregister = _IMP_core.MultipleBinormalRestraint_swigregister
13399 MultipleBinormalRestraint_swigregister(MultipleBinormalRestraint)
13400 
13401 class BinormalTerm(object):
13402  """Proxy of C++ IMP::core::BinormalTerm class."""
13403 
13404  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
13405 
13406  def __init__(self):
13407  """__init__(IMP::core::BinormalTerm self) -> BinormalTerm"""
13408  this = _IMP_core.new_BinormalTerm()
13409  try:
13410  self.this.append(this)
13411  except __builtin__.Exception:
13412  self.this = this
13413 
13414  def set_correlation(self, correlation):
13415  """set_correlation(BinormalTerm self, double correlation)"""
13416  return _IMP_core.BinormalTerm_set_correlation(self, correlation)
13417 
13418 
13419  def set_weight(self, weight):
13420  """set_weight(BinormalTerm self, double weight)"""
13421  return _IMP_core.BinormalTerm_set_weight(self, weight)
13422 
13423 
13424  def set_means(self, means):
13425  """set_means(BinormalTerm self, IMP::FloatPair means)"""
13426  return _IMP_core.BinormalTerm_set_means(self, means)
13427 
13428 
13429  def set_standard_deviations(self, stdevs):
13430  """set_standard_deviations(BinormalTerm self, IMP::FloatPair stdevs)"""
13431  return _IMP_core.BinormalTerm_set_standard_deviations(self, stdevs)
13432 
13433 
13434  def show(self, *args):
13435  """
13436  show(BinormalTerm self, _ostream out)
13437  show(BinormalTerm self)
13438  """
13439  return _IMP_core.BinormalTerm_show(self, *args)
13440 
13441 
13442  def __str__(self):
13443  """__str__(BinormalTerm self) -> std::string"""
13444  return _IMP_core.BinormalTerm___str__(self)
13445 
13446 
13447  def __repr__(self):
13448  """__repr__(BinormalTerm self) -> std::string"""
13449  return _IMP_core.BinormalTerm___repr__(self)
13450 
13451  __swig_destroy__ = _IMP_core.delete_BinormalTerm
13452  __del__ = lambda self: None
13453 BinormalTerm_swigregister = _IMP_core.BinormalTerm_swigregister
13454 BinormalTerm_swigregister(BinormalTerm)
13455 
13456 class Provenance(IMP.Decorator):
13457  """Proxy of C++ IMP::core::Provenance class."""
13458 
13459  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
13460 
13461  def get_previous(self):
13462  """get_previous(Provenance self) -> Provenance"""
13463  return _IMP_core.Provenance_get_previous(self)
13464 
13465 
13466  def set_previous(self, p):
13467  """set_previous(Provenance self, Provenance p)"""
13468  return _IMP_core.Provenance_set_previous(self, p)
13469 
13470 
13471  def __init__(self, *args):
13472  """
13473  __init__(IMP::core::Provenance self) -> Provenance
13474  __init__(IMP::core::Provenance self, Model m, ParticleIndex id) -> Provenance
13475  __init__(IMP::core::Provenance self, _ParticleAdaptor d) -> Provenance
13476  """
13477  this = _IMP_core.new_Provenance(*args)
13478  try:
13479  self.this.append(this)
13480  except __builtin__.Exception:
13481  self.this = this
13482 
13483  def get_is_setup(*args):
13484  """
13485  get_is_setup(Model m, ParticleIndex pi) -> bool
13486  get_is_setup(_ParticleAdaptor p) -> bool
13487  """
13488  return _IMP_core.Provenance_get_is_setup(*args)
13489 
13490  get_is_setup = staticmethod(get_is_setup)
13491 
13492  def show(self, *args):
13493  """
13494  show(Provenance self, _ostream out)
13495  show(Provenance self)
13496  """
13497  return _IMP_core.Provenance_show(self, *args)
13498 
13499 
13500  def setup_particle(*args):
13501  """
13502  setup_particle(Model m, ParticleIndex pi) -> Provenance
13503  setup_particle(_ParticleAdaptor decorator) -> Provenance
13504  """
13505  return _IMP_core.Provenance_setup_particle(*args)
13506 
13507  setup_particle = staticmethod(setup_particle)
13508 
13509  def add_attribute(self, *args):
13510  """
13511  add_attribute(Provenance self, FloatKey k, IMP::Float v, bool opt)
13512  add_attribute(Provenance self, FloatKey a0, IMP::Float a1)
13513  add_attribute(Provenance self, IntKey a0, IMP::Int a1)
13514  add_attribute(Provenance self, StringKey a0, IMP::String a1)
13515  add_attribute(Provenance self, ParticleIndexKey a0, Particle a1)
13516  add_attribute(Provenance self, ObjectKey a0, Object a1)
13517  """
13518  return _IMP_core.Provenance_add_attribute(self, *args)
13519 
13520 
13521  def get_value(self, *args):
13522  """
13523  get_value(Provenance self, FloatKey a0) -> IMP::Float
13524  get_value(Provenance self, IntKey a0) -> IMP::Int
13525  get_value(Provenance self, StringKey a0) -> IMP::String
13526  get_value(Provenance self, ParticleIndexKey a0) -> Particle
13527  get_value(Provenance self, ObjectKey a0) -> Object
13528  """
13529  return _IMP_core.Provenance_get_value(self, *args)
13530 
13531 
13532  def set_value(self, *args):
13533  """
13534  set_value(Provenance self, FloatKey a0, IMP::Float a1)
13535  set_value(Provenance self, IntKey a0, IMP::Int a1)
13536  set_value(Provenance self, StringKey a0, IMP::String a1)
13537  set_value(Provenance self, ParticleIndexKey a0, Particle a1)
13538  set_value(Provenance self, ObjectKey a0, Object a1)
13539  """
13540  return _IMP_core.Provenance_set_value(self, *args)
13541 
13542 
13543  def remove_attribute(self, *args):
13544  """
13545  remove_attribute(Provenance self, FloatKey a0)
13546  remove_attribute(Provenance self, IntKey a0)
13547  remove_attribute(Provenance self, StringKey a0)
13548  remove_attribute(Provenance self, ParticleIndexKey a0)
13549  remove_attribute(Provenance self, ObjectKey a0)
13550  """
13551  return _IMP_core.Provenance_remove_attribute(self, *args)
13552 
13553 
13554  def has_attribute(self, *args):
13555  """
13556  has_attribute(Provenance self, FloatKey a0) -> bool
13557  has_attribute(Provenance self, IntKey a0) -> bool
13558  has_attribute(Provenance self, StringKey a0) -> bool
13559  has_attribute(Provenance self, ParticleIndexKey a0) -> bool
13560  has_attribute(Provenance self, ObjectKey a0) -> bool
13561  """
13562  return _IMP_core.Provenance_has_attribute(self, *args)
13563 
13564 
13565  def get_derivative(self, a0):
13566  """get_derivative(Provenance self, FloatKey a0) -> double"""
13567  return _IMP_core.Provenance_get_derivative(self, a0)
13568 
13569 
13570  def get_name(self):
13571  """get_name(Provenance self) -> std::string"""
13572  return _IMP_core.Provenance_get_name(self)
13573 
13574 
13575  def clear_caches(self):
13576  """clear_caches(Provenance self)"""
13577  return _IMP_core.Provenance_clear_caches(self)
13578 
13579 
13580  def set_name(self, a0):
13581  """set_name(Provenance self, std::string a0)"""
13582  return _IMP_core.Provenance_set_name(self, a0)
13583 
13584 
13585  def set_check_level(self, a0):
13586  """set_check_level(Provenance self, IMP::CheckLevel a0)"""
13587  return _IMP_core.Provenance_set_check_level(self, a0)
13588 
13589 
13590  def add_to_derivative(self, a0, a1, a2):
13591  """add_to_derivative(Provenance self, FloatKey a0, double a1, DerivativeAccumulator a2)"""
13592  return _IMP_core.Provenance_add_to_derivative(self, a0, a1, a2)
13593 
13594 
13595  def set_is_optimized(self, a0, a1):
13596  """set_is_optimized(Provenance self, FloatKey a0, bool a1)"""
13597  return _IMP_core.Provenance_set_is_optimized(self, a0, a1)
13598 
13599 
13600  def get_is_optimized(self, a0):
13601  """get_is_optimized(Provenance self, FloatKey a0) -> bool"""
13602  return _IMP_core.Provenance_get_is_optimized(self, a0)
13603 
13604 
13605  def get_check_level(self):
13606  """get_check_level(Provenance self) -> IMP::CheckLevel"""
13607  return _IMP_core.Provenance_get_check_level(self)
13608 
13609 
13610  def __eq__(self, *args):
13611  """
13612  __eq__(Provenance self, Provenance o) -> bool
13613  __eq__(Provenance self, Particle d) -> bool
13614  """
13615  return _IMP_core.Provenance___eq__(self, *args)
13616 
13617 
13618  def __ne__(self, *args):
13619  """
13620  __ne__(Provenance self, Provenance o) -> bool
13621  __ne__(Provenance self, Particle d) -> bool
13622  """
13623  return _IMP_core.Provenance___ne__(self, *args)
13624 
13625 
13626  def __le__(self, *args):
13627  """
13628  __le__(Provenance self, Provenance o) -> bool
13629  __le__(Provenance self, Particle d) -> bool
13630  """
13631  return _IMP_core.Provenance___le__(self, *args)
13632 
13633 
13634  def __lt__(self, *args):
13635  """
13636  __lt__(Provenance self, Provenance o) -> bool
13637  __lt__(Provenance self, Particle d) -> bool
13638  """
13639  return _IMP_core.Provenance___lt__(self, *args)
13640 
13641 
13642  def __ge__(self, *args):
13643  """
13644  __ge__(Provenance self, Provenance o) -> bool
13645  __ge__(Provenance self, Particle d) -> bool
13646  """
13647  return _IMP_core.Provenance___ge__(self, *args)
13648 
13649 
13650  def __gt__(self, *args):
13651  """
13652  __gt__(Provenance self, Provenance o) -> bool
13653  __gt__(Provenance self, Particle d) -> bool
13654  """
13655  return _IMP_core.Provenance___gt__(self, *args)
13656 
13657 
13658  def __hash__(self):
13659  """__hash__(Provenance self) -> std::size_t"""
13660  return _IMP_core.Provenance___hash__(self)
13661 
13662 
13663  def __str__(self):
13664  """__str__(Provenance self) -> std::string"""
13665  return _IMP_core.Provenance___str__(self)
13666 
13667 
13668  def __repr__(self):
13669  """__repr__(Provenance self) -> std::string"""
13670  return _IMP_core.Provenance___repr__(self)
13671 
13672  __swig_destroy__ = _IMP_core.delete_Provenance
13673  __del__ = lambda self: None
13674 Provenance_swigregister = _IMP_core.Provenance_swigregister
13675 Provenance_swigregister(Provenance)
13676 
13677 def Provenance_get_is_setup(*args):
13678  """
13679  get_is_setup(Model m, ParticleIndex pi) -> bool
13680  Provenance_get_is_setup(_ParticleAdaptor p) -> bool
13681  """
13682  return _IMP_core.Provenance_get_is_setup(*args)
13683 
13684 def Provenance_setup_particle(*args):
13685  """
13686  setup_particle(Model m, ParticleIndex pi) -> Provenance
13687  Provenance_setup_particle(_ParticleAdaptor decorator) -> Provenance
13688  """
13689  return _IMP_core.Provenance_setup_particle(*args)
13690 
13691 class StructureProvenance(Provenance):
13692  """Proxy of C++ IMP::core::StructureProvenance class."""
13693 
13694  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
13695 
13696  def set_filename(self, filename):
13697  """set_filename(StructureProvenance self, std::string filename)"""
13698  return _IMP_core.StructureProvenance_set_filename(self, filename)
13699 
13700 
13701  def get_filename(self):
13702  """get_filename(StructureProvenance self) -> std::string"""
13703  return _IMP_core.StructureProvenance_get_filename(self)
13704 
13705 
13706  def set_chain_id(self, chain_id):
13707  """set_chain_id(StructureProvenance self, std::string chain_id)"""
13708  return _IMP_core.StructureProvenance_set_chain_id(self, chain_id)
13709 
13710 
13711  def get_chain_id(self):
13712  """get_chain_id(StructureProvenance self) -> std::string"""
13713  return _IMP_core.StructureProvenance_get_chain_id(self)
13714 
13715 
13716  def set_residue_offset(self, residue_offset):
13717  """set_residue_offset(StructureProvenance self, int residue_offset)"""
13718  return _IMP_core.StructureProvenance_set_residue_offset(self, residue_offset)
13719 
13720 
13721  def get_residue_offset(self):
13722  """get_residue_offset(StructureProvenance self) -> int"""
13723  return _IMP_core.StructureProvenance_get_residue_offset(self)
13724 
13725 
13726  def __init__(self, *args):
13727  """
13728  __init__(IMP::core::StructureProvenance self) -> StructureProvenance
13729  __init__(IMP::core::StructureProvenance self, Model m, ParticleIndex id) -> StructureProvenance
13730  __init__(IMP::core::StructureProvenance self, _ParticleAdaptor d) -> StructureProvenance
13731  """
13732  this = _IMP_core.new_StructureProvenance(*args)
13733  try:
13734  self.this.append(this)
13735  except __builtin__.Exception:
13736  self.this = this
13737 
13738  def get_is_setup(*args):
13739  """
13740  get_is_setup(Model m, ParticleIndex pi) -> bool
13741  get_is_setup(_ParticleAdaptor p) -> bool
13742  """
13743  return _IMP_core.StructureProvenance_get_is_setup(*args)
13744 
13745  get_is_setup = staticmethod(get_is_setup)
13746 
13747  def show(self, *args):
13748  """
13749  show(StructureProvenance self, _ostream out)
13750  show(StructureProvenance self)
13751  """
13752  return _IMP_core.StructureProvenance_show(self, *args)
13753 
13754 
13755  def setup_particle(*args):
13756  """
13757  setup_particle(Model m, ParticleIndex pi, std::string filename, std::string chain_id, int residue_offset) -> StructureProvenance
13758  setup_particle(_ParticleAdaptor decorator, std::string filename, std::string chain_id, int residue_offset) -> StructureProvenance
13759  setup_particle(Model m, ParticleIndex pi, std::string filename, std::string chain_id) -> StructureProvenance
13760  setup_particle(_ParticleAdaptor decorator, std::string filename, std::string chain_id) -> StructureProvenance
13761  setup_particle(Model m, ParticleIndex pi, StructureProvenance o) -> StructureProvenance
13762  setup_particle(_ParticleAdaptor decorator, StructureProvenance o) -> StructureProvenance
13763  """
13764  return _IMP_core.StructureProvenance_setup_particle(*args)
13765 
13766  setup_particle = staticmethod(setup_particle)
13767 
13768  def add_attribute(self, *args):
13769  """
13770  add_attribute(StructureProvenance self, FloatKey k, IMP::Float v, bool opt)
13771  add_attribute(StructureProvenance self, FloatKey a0, IMP::Float a1)
13772  add_attribute(StructureProvenance self, IntKey a0, IMP::Int a1)
13773  add_attribute(StructureProvenance self, StringKey a0, IMP::String a1)
13774  add_attribute(StructureProvenance self, ParticleIndexKey a0, Particle a1)
13775  add_attribute(StructureProvenance self, ObjectKey a0, Object a1)
13776  """
13777  return _IMP_core.StructureProvenance_add_attribute(self, *args)
13778 
13779 
13780  def get_value(self, *args):
13781  """
13782  get_value(StructureProvenance self, FloatKey a0) -> IMP::Float
13783  get_value(StructureProvenance self, IntKey a0) -> IMP::Int
13784  get_value(StructureProvenance self, StringKey a0) -> IMP::String
13785  get_value(StructureProvenance self, ParticleIndexKey a0) -> Particle
13786  get_value(StructureProvenance self, ObjectKey a0) -> Object
13787  """
13788  return _IMP_core.StructureProvenance_get_value(self, *args)
13789 
13790 
13791  def set_value(self, *args):
13792  """
13793  set_value(StructureProvenance self, FloatKey a0, IMP::Float a1)
13794  set_value(StructureProvenance self, IntKey a0, IMP::Int a1)
13795  set_value(StructureProvenance self, StringKey a0, IMP::String a1)
13796  set_value(StructureProvenance self, ParticleIndexKey a0, Particle a1)
13797  set_value(StructureProvenance self, ObjectKey a0, Object a1)
13798  """
13799  return _IMP_core.StructureProvenance_set_value(self, *args)
13800 
13801 
13802  def remove_attribute(self, *args):
13803  """
13804  remove_attribute(StructureProvenance self, FloatKey a0)
13805  remove_attribute(StructureProvenance self, IntKey a0)
13806  remove_attribute(StructureProvenance self, StringKey a0)
13807  remove_attribute(StructureProvenance self, ParticleIndexKey a0)
13808  remove_attribute(StructureProvenance self, ObjectKey a0)
13809  """
13810  return _IMP_core.StructureProvenance_remove_attribute(self, *args)
13811 
13812 
13813  def has_attribute(self, *args):
13814  """
13815  has_attribute(StructureProvenance self, FloatKey a0) -> bool
13816  has_attribute(StructureProvenance self, IntKey a0) -> bool
13817  has_attribute(StructureProvenance self, StringKey a0) -> bool
13818  has_attribute(StructureProvenance self, ParticleIndexKey a0) -> bool
13819  has_attribute(StructureProvenance self, ObjectKey a0) -> bool
13820  """
13821  return _IMP_core.StructureProvenance_has_attribute(self, *args)
13822 
13823 
13824  def get_derivative(self, a0):
13825  """get_derivative(StructureProvenance self, FloatKey a0) -> double"""
13826  return _IMP_core.StructureProvenance_get_derivative(self, a0)
13827 
13828 
13829  def get_name(self):
13830  """get_name(StructureProvenance self) -> std::string"""
13831  return _IMP_core.StructureProvenance_get_name(self)
13832 
13833 
13834  def clear_caches(self):
13835  """clear_caches(StructureProvenance self)"""
13836  return _IMP_core.StructureProvenance_clear_caches(self)
13837 
13838 
13839  def set_name(self, a0):
13840  """set_name(StructureProvenance self, std::string a0)"""
13841  return _IMP_core.StructureProvenance_set_name(self, a0)
13842 
13843 
13844  def set_check_level(self, a0):
13845  """set_check_level(StructureProvenance self, IMP::CheckLevel a0)"""
13846  return _IMP_core.StructureProvenance_set_check_level(self, a0)
13847 
13848 
13849  def add_to_derivative(self, a0, a1, a2):
13850  """add_to_derivative(StructureProvenance self, FloatKey a0, double a1, DerivativeAccumulator a2)"""
13851  return _IMP_core.StructureProvenance_add_to_derivative(self, a0, a1, a2)
13852 
13853 
13854  def set_is_optimized(self, a0, a1):
13855  """set_is_optimized(StructureProvenance self, FloatKey a0, bool a1)"""
13856  return _IMP_core.StructureProvenance_set_is_optimized(self, a0, a1)
13857 
13858 
13859  def get_is_optimized(self, a0):
13860  """get_is_optimized(StructureProvenance self, FloatKey a0) -> bool"""
13861  return _IMP_core.StructureProvenance_get_is_optimized(self, a0)
13862 
13863 
13864  def get_check_level(self):
13865  """get_check_level(StructureProvenance self) -> IMP::CheckLevel"""
13866  return _IMP_core.StructureProvenance_get_check_level(self)
13867 
13868 
13869  def __eq__(self, *args):
13870  """
13871  __eq__(StructureProvenance self, StructureProvenance o) -> bool
13872  __eq__(StructureProvenance self, Particle d) -> bool
13873  """
13874  return _IMP_core.StructureProvenance___eq__(self, *args)
13875 
13876 
13877  def __ne__(self, *args):
13878  """
13879  __ne__(StructureProvenance self, StructureProvenance o) -> bool
13880  __ne__(StructureProvenance self, Particle d) -> bool
13881  """
13882  return _IMP_core.StructureProvenance___ne__(self, *args)
13883 
13884 
13885  def __le__(self, *args):
13886  """
13887  __le__(StructureProvenance self, StructureProvenance o) -> bool
13888  __le__(StructureProvenance self, Particle d) -> bool
13889  """
13890  return _IMP_core.StructureProvenance___le__(self, *args)
13891 
13892 
13893  def __lt__(self, *args):
13894  """
13895  __lt__(StructureProvenance self, StructureProvenance o) -> bool
13896  __lt__(StructureProvenance self, Particle d) -> bool
13897  """
13898  return _IMP_core.StructureProvenance___lt__(self, *args)
13899 
13900 
13901  def __ge__(self, *args):
13902  """
13903  __ge__(StructureProvenance self, StructureProvenance o) -> bool
13904  __ge__(StructureProvenance self, Particle d) -> bool
13905  """
13906  return _IMP_core.StructureProvenance___ge__(self, *args)
13907 
13908 
13909  def __gt__(self, *args):
13910  """
13911  __gt__(StructureProvenance self, StructureProvenance o) -> bool
13912  __gt__(StructureProvenance self, Particle d) -> bool
13913  """
13914  return _IMP_core.StructureProvenance___gt__(self, *args)
13915 
13916 
13917  def __hash__(self):
13918  """__hash__(StructureProvenance self) -> std::size_t"""
13919  return _IMP_core.StructureProvenance___hash__(self)
13920 
13921 
13922  def __str__(self):
13923  """__str__(StructureProvenance self) -> std::string"""
13924  return _IMP_core.StructureProvenance___str__(self)
13925 
13926 
13927  def __repr__(self):
13928  """__repr__(StructureProvenance self) -> std::string"""
13929  return _IMP_core.StructureProvenance___repr__(self)
13930 
13931  __swig_destroy__ = _IMP_core.delete_StructureProvenance
13932  __del__ = lambda self: None
13933 StructureProvenance_swigregister = _IMP_core.StructureProvenance_swigregister
13934 StructureProvenance_swigregister(StructureProvenance)
13935 
13936 def StructureProvenance_get_is_setup(*args):
13937  """
13938  get_is_setup(Model m, ParticleIndex pi) -> bool
13939  StructureProvenance_get_is_setup(_ParticleAdaptor p) -> bool
13940  """
13941  return _IMP_core.StructureProvenance_get_is_setup(*args)
13942 
13943 def StructureProvenance_setup_particle(*args):
13944  """
13945  setup_particle(Model m, ParticleIndex pi, std::string filename, std::string chain_id, int residue_offset) -> StructureProvenance
13946  setup_particle(_ParticleAdaptor decorator, std::string filename, std::string chain_id, int residue_offset) -> StructureProvenance
13947  setup_particle(Model m, ParticleIndex pi, std::string filename, std::string chain_id) -> StructureProvenance
13948  setup_particle(_ParticleAdaptor decorator, std::string filename, std::string chain_id) -> StructureProvenance
13949  setup_particle(Model m, ParticleIndex pi, StructureProvenance o) -> StructureProvenance
13950  StructureProvenance_setup_particle(_ParticleAdaptor decorator, StructureProvenance o) -> StructureProvenance
13951  """
13952  return _IMP_core.StructureProvenance_setup_particle(*args)
13953 
13954 class SampleProvenance(Provenance):
13955  """Proxy of C++ IMP::core::SampleProvenance class."""
13956 
13957  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
13958 
13959  def set_method(self, method):
13960  """set_method(SampleProvenance self, std::string method)"""
13961  return _IMP_core.SampleProvenance_set_method(self, method)
13962 
13963 
13964  def get_method(self):
13965  """get_method(SampleProvenance self) -> std::string"""
13966  return _IMP_core.SampleProvenance_get_method(self)
13967 
13968 
13969  def set_number_of_frames(self, frames):
13970  """set_number_of_frames(SampleProvenance self, int frames)"""
13971  return _IMP_core.SampleProvenance_set_number_of_frames(self, frames)
13972 
13973 
13974  def get_number_of_frames(self):
13975  """get_number_of_frames(SampleProvenance self) -> int"""
13976  return _IMP_core.SampleProvenance_get_number_of_frames(self)
13977 
13978 
13979  def set_number_of_iterations(self, iterations):
13980  """set_number_of_iterations(SampleProvenance self, int iterations)"""
13981  return _IMP_core.SampleProvenance_set_number_of_iterations(self, iterations)
13982 
13983 
13984  def get_number_of_iterations(self):
13985  """get_number_of_iterations(SampleProvenance self) -> int"""
13986  return _IMP_core.SampleProvenance_get_number_of_iterations(self)
13987 
13988 
13989  def set_number_of_replicas(self, replicas):
13990  """set_number_of_replicas(SampleProvenance self, int replicas)"""
13991  return _IMP_core.SampleProvenance_set_number_of_replicas(self, replicas)
13992 
13993 
13994  def get_number_of_replicas(self):
13995  """get_number_of_replicas(SampleProvenance self) -> int"""
13996  return _IMP_core.SampleProvenance_get_number_of_replicas(self)
13997 
13998 
13999  def __init__(self, *args):
14000  """
14001  __init__(IMP::core::SampleProvenance self) -> SampleProvenance
14002  __init__(IMP::core::SampleProvenance self, Model m, ParticleIndex id) -> SampleProvenance
14003  __init__(IMP::core::SampleProvenance self, _ParticleAdaptor d) -> SampleProvenance
14004  """
14005  this = _IMP_core.new_SampleProvenance(*args)
14006  try:
14007  self.this.append(this)
14008  except __builtin__.Exception:
14009  self.this = this
14010 
14011  def get_is_setup(*args):
14012  """
14013  get_is_setup(Model m, ParticleIndex pi) -> bool
14014  get_is_setup(_ParticleAdaptor p) -> bool
14015  """
14016  return _IMP_core.SampleProvenance_get_is_setup(*args)
14017 
14018  get_is_setup = staticmethod(get_is_setup)
14019 
14020  def show(self, *args):
14021  """
14022  show(SampleProvenance self, _ostream out)
14023  show(SampleProvenance self)
14024  """
14025  return _IMP_core.SampleProvenance_show(self, *args)
14026 
14027 
14028  def setup_particle(*args):
14029  """
14030  setup_particle(Model m, ParticleIndex pi, std::string method, int frames, int iterations, int replicas) -> SampleProvenance
14031  setup_particle(_ParticleAdaptor decorator, std::string method, int frames, int iterations, int replicas) -> SampleProvenance
14032  setup_particle(Model m, ParticleIndex pi, std::string method, int frames, int iterations) -> SampleProvenance
14033  setup_particle(_ParticleAdaptor decorator, std::string method, int frames, int iterations) -> SampleProvenance
14034  setup_particle(Model m, ParticleIndex pi, SampleProvenance o) -> SampleProvenance
14035  setup_particle(_ParticleAdaptor decorator, SampleProvenance o) -> SampleProvenance
14036  """
14037  return _IMP_core.SampleProvenance_setup_particle(*args)
14038 
14039  setup_particle = staticmethod(setup_particle)
14040 
14041  def add_attribute(self, *args):
14042  """
14043  add_attribute(SampleProvenance self, FloatKey k, IMP::Float v, bool opt)
14044  add_attribute(SampleProvenance self, FloatKey a0, IMP::Float a1)
14045  add_attribute(SampleProvenance self, IntKey a0, IMP::Int a1)
14046  add_attribute(SampleProvenance self, StringKey a0, IMP::String a1)
14047  add_attribute(SampleProvenance self, ParticleIndexKey a0, Particle a1)
14048  add_attribute(SampleProvenance self, ObjectKey a0, Object a1)
14049  """
14050  return _IMP_core.SampleProvenance_add_attribute(self, *args)
14051 
14052 
14053  def get_value(self, *args):
14054  """
14055  get_value(SampleProvenance self, FloatKey a0) -> IMP::Float
14056  get_value(SampleProvenance self, IntKey a0) -> IMP::Int
14057  get_value(SampleProvenance self, StringKey a0) -> IMP::String
14058  get_value(SampleProvenance self, ParticleIndexKey a0) -> Particle
14059  get_value(SampleProvenance self, ObjectKey a0) -> Object
14060  """
14061  return _IMP_core.SampleProvenance_get_value(self, *args)
14062 
14063 
14064  def set_value(self, *args):
14065  """
14066  set_value(SampleProvenance self, FloatKey a0, IMP::Float a1)
14067  set_value(SampleProvenance self, IntKey a0, IMP::Int a1)
14068  set_value(SampleProvenance self, StringKey a0, IMP::String a1)
14069  set_value(SampleProvenance self, ParticleIndexKey a0, Particle a1)
14070  set_value(SampleProvenance self, ObjectKey a0, Object a1)
14071  """
14072  return _IMP_core.SampleProvenance_set_value(self, *args)
14073 
14074 
14075  def remove_attribute(self, *args):
14076  """
14077  remove_attribute(SampleProvenance self, FloatKey a0)
14078  remove_attribute(SampleProvenance self, IntKey a0)
14079  remove_attribute(SampleProvenance self, StringKey a0)
14080  remove_attribute(SampleProvenance self, ParticleIndexKey a0)
14081  remove_attribute(SampleProvenance self, ObjectKey a0)
14082  """
14083  return _IMP_core.SampleProvenance_remove_attribute(self, *args)
14084 
14085 
14086  def has_attribute(self, *args):
14087  """
14088  has_attribute(SampleProvenance self, FloatKey a0) -> bool
14089  has_attribute(SampleProvenance self, IntKey a0) -> bool
14090  has_attribute(SampleProvenance self, StringKey a0) -> bool
14091  has_attribute(SampleProvenance self, ParticleIndexKey a0) -> bool
14092  has_attribute(SampleProvenance self, ObjectKey a0) -> bool
14093  """
14094  return _IMP_core.SampleProvenance_has_attribute(self, *args)
14095 
14096 
14097  def get_derivative(self, a0):
14098  """get_derivative(SampleProvenance self, FloatKey a0) -> double"""
14099  return _IMP_core.SampleProvenance_get_derivative(self, a0)
14100 
14101 
14102  def get_name(self):
14103  """get_name(SampleProvenance self) -> std::string"""
14104  return _IMP_core.SampleProvenance_get_name(self)
14105 
14106 
14107  def clear_caches(self):
14108  """clear_caches(SampleProvenance self)"""
14109  return _IMP_core.SampleProvenance_clear_caches(self)
14110 
14111 
14112  def set_name(self, a0):
14113  """set_name(SampleProvenance self, std::string a0)"""
14114  return _IMP_core.SampleProvenance_set_name(self, a0)
14115 
14116 
14117  def set_check_level(self, a0):
14118  """set_check_level(SampleProvenance self, IMP::CheckLevel a0)"""
14119  return _IMP_core.SampleProvenance_set_check_level(self, a0)
14120 
14121 
14122  def add_to_derivative(self, a0, a1, a2):
14123  """add_to_derivative(SampleProvenance self, FloatKey a0, double a1, DerivativeAccumulator a2)"""
14124  return _IMP_core.SampleProvenance_add_to_derivative(self, a0, a1, a2)
14125 
14126 
14127  def set_is_optimized(self, a0, a1):
14128  """set_is_optimized(SampleProvenance self, FloatKey a0, bool a1)"""
14129  return _IMP_core.SampleProvenance_set_is_optimized(self, a0, a1)
14130 
14131 
14132  def get_is_optimized(self, a0):
14133  """get_is_optimized(SampleProvenance self, FloatKey a0) -> bool"""
14134  return _IMP_core.SampleProvenance_get_is_optimized(self, a0)
14135 
14136 
14137  def get_check_level(self):
14138  """get_check_level(SampleProvenance self) -> IMP::CheckLevel"""
14139  return _IMP_core.SampleProvenance_get_check_level(self)
14140 
14141 
14142  def __eq__(self, *args):
14143  """
14144  __eq__(SampleProvenance self, SampleProvenance o) -> bool
14145  __eq__(SampleProvenance self, Particle d) -> bool
14146  """
14147  return _IMP_core.SampleProvenance___eq__(self, *args)
14148 
14149 
14150  def __ne__(self, *args):
14151  """
14152  __ne__(SampleProvenance self, SampleProvenance o) -> bool
14153  __ne__(SampleProvenance self, Particle d) -> bool
14154  """
14155  return _IMP_core.SampleProvenance___ne__(self, *args)
14156 
14157 
14158  def __le__(self, *args):
14159  """
14160  __le__(SampleProvenance self, SampleProvenance o) -> bool
14161  __le__(SampleProvenance self, Particle d) -> bool
14162  """
14163  return _IMP_core.SampleProvenance___le__(self, *args)
14164 
14165 
14166  def __lt__(self, *args):
14167  """
14168  __lt__(SampleProvenance self, SampleProvenance o) -> bool
14169  __lt__(SampleProvenance self, Particle d) -> bool
14170  """
14171  return _IMP_core.SampleProvenance___lt__(self, *args)
14172 
14173 
14174  def __ge__(self, *args):
14175  """
14176  __ge__(SampleProvenance self, SampleProvenance o) -> bool
14177  __ge__(SampleProvenance self, Particle d) -> bool
14178  """
14179  return _IMP_core.SampleProvenance___ge__(self, *args)
14180 
14181 
14182  def __gt__(self, *args):
14183  """
14184  __gt__(SampleProvenance self, SampleProvenance o) -> bool
14185  __gt__(SampleProvenance self, Particle d) -> bool
14186  """
14187  return _IMP_core.SampleProvenance___gt__(self, *args)
14188 
14189 
14190  def __hash__(self):
14191  """__hash__(SampleProvenance self) -> std::size_t"""
14192  return _IMP_core.SampleProvenance___hash__(self)
14193 
14194 
14195  def __str__(self):
14196  """__str__(SampleProvenance self) -> std::string"""
14197  return _IMP_core.SampleProvenance___str__(self)
14198 
14199 
14200  def __repr__(self):
14201  """__repr__(SampleProvenance self) -> std::string"""
14202  return _IMP_core.SampleProvenance___repr__(self)
14203 
14204  __swig_destroy__ = _IMP_core.delete_SampleProvenance
14205  __del__ = lambda self: None
14206 SampleProvenance_swigregister = _IMP_core.SampleProvenance_swigregister
14207 SampleProvenance_swigregister(SampleProvenance)
14208 
14209 def SampleProvenance_get_is_setup(*args):
14210  """
14211  get_is_setup(Model m, ParticleIndex pi) -> bool
14212  SampleProvenance_get_is_setup(_ParticleAdaptor p) -> bool
14213  """
14214  return _IMP_core.SampleProvenance_get_is_setup(*args)
14215 
14216 def SampleProvenance_setup_particle(*args):
14217  """
14218  setup_particle(Model m, ParticleIndex pi, std::string method, int frames, int iterations, int replicas) -> SampleProvenance
14219  setup_particle(_ParticleAdaptor decorator, std::string method, int frames, int iterations, int replicas) -> SampleProvenance
14220  setup_particle(Model m, ParticleIndex pi, std::string method, int frames, int iterations) -> SampleProvenance
14221  setup_particle(_ParticleAdaptor decorator, std::string method, int frames, int iterations) -> SampleProvenance
14222  setup_particle(Model m, ParticleIndex pi, SampleProvenance o) -> SampleProvenance
14223  SampleProvenance_setup_particle(_ParticleAdaptor decorator, SampleProvenance o) -> SampleProvenance
14224  """
14225  return _IMP_core.SampleProvenance_setup_particle(*args)
14226 
14227 class CombineProvenance(Provenance):
14228  """Proxy of C++ IMP::core::CombineProvenance class."""
14229 
14230  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
14231 
14232  def set_number_of_frames(self, frames):
14233  """set_number_of_frames(CombineProvenance self, int frames)"""
14234  return _IMP_core.CombineProvenance_set_number_of_frames(self, frames)
14235 
14236 
14237  def get_number_of_frames(self):
14238  """get_number_of_frames(CombineProvenance self) -> int"""
14239  return _IMP_core.CombineProvenance_get_number_of_frames(self)
14240 
14241 
14242  def set_number_of_runs(self, runs):
14243  """set_number_of_runs(CombineProvenance self, int runs)"""
14244  return _IMP_core.CombineProvenance_set_number_of_runs(self, runs)
14245 
14246 
14247  def get_number_of_runs(self):
14248  """get_number_of_runs(CombineProvenance self) -> int"""
14249  return _IMP_core.CombineProvenance_get_number_of_runs(self)
14250 
14251 
14252  def __init__(self, *args):
14253  """
14254  __init__(IMP::core::CombineProvenance self) -> CombineProvenance
14255  __init__(IMP::core::CombineProvenance self, Model m, ParticleIndex id) -> CombineProvenance
14256  __init__(IMP::core::CombineProvenance self, _ParticleAdaptor d) -> CombineProvenance
14257  """
14258  this = _IMP_core.new_CombineProvenance(*args)
14259  try:
14260  self.this.append(this)
14261  except __builtin__.Exception:
14262  self.this = this
14263 
14264  def get_is_setup(*args):
14265  """
14266  get_is_setup(Model m, ParticleIndex pi) -> bool
14267  get_is_setup(_ParticleAdaptor p) -> bool
14268  """
14269  return _IMP_core.CombineProvenance_get_is_setup(*args)
14270 
14271  get_is_setup = staticmethod(get_is_setup)
14272 
14273  def show(self, *args):
14274  """
14275  show(CombineProvenance self, _ostream out)
14276  show(CombineProvenance self)
14277  """
14278  return _IMP_core.CombineProvenance_show(self, *args)
14279 
14280 
14281  def setup_particle(*args):
14282  """
14283  setup_particle(Model m, ParticleIndex pi, int runs, int frames) -> CombineProvenance
14284  setup_particle(_ParticleAdaptor decorator, int runs, int frames) -> CombineProvenance
14285  setup_particle(Model m, ParticleIndex pi, CombineProvenance o) -> CombineProvenance
14286  setup_particle(_ParticleAdaptor decorator, CombineProvenance o) -> CombineProvenance
14287  """
14288  return _IMP_core.CombineProvenance_setup_particle(*args)
14289 
14290  setup_particle = staticmethod(setup_particle)
14291 
14292  def add_attribute(self, *args):
14293  """
14294  add_attribute(CombineProvenance self, FloatKey k, IMP::Float v, bool opt)
14295  add_attribute(CombineProvenance self, FloatKey a0, IMP::Float a1)
14296  add_attribute(CombineProvenance self, IntKey a0, IMP::Int a1)
14297  add_attribute(CombineProvenance self, StringKey a0, IMP::String a1)
14298  add_attribute(CombineProvenance self, ParticleIndexKey a0, Particle a1)
14299  add_attribute(CombineProvenance self, ObjectKey a0, Object a1)
14300  """
14301  return _IMP_core.CombineProvenance_add_attribute(self, *args)
14302 
14303 
14304  def get_value(self, *args):
14305  """
14306  get_value(CombineProvenance self, FloatKey a0) -> IMP::Float
14307  get_value(CombineProvenance self, IntKey a0) -> IMP::Int
14308  get_value(CombineProvenance self, StringKey a0) -> IMP::String
14309  get_value(CombineProvenance self, ParticleIndexKey a0) -> Particle
14310  get_value(CombineProvenance self, ObjectKey a0) -> Object
14311  """
14312  return _IMP_core.CombineProvenance_get_value(self, *args)
14313 
14314 
14315  def set_value(self, *args):
14316  """
14317  set_value(CombineProvenance self, FloatKey a0, IMP::Float a1)
14318  set_value(CombineProvenance self, IntKey a0, IMP::Int a1)
14319  set_value(CombineProvenance self, StringKey a0, IMP::String a1)
14320  set_value(CombineProvenance self, ParticleIndexKey a0, Particle a1)
14321  set_value(CombineProvenance self, ObjectKey a0, Object a1)
14322  """
14323  return _IMP_core.CombineProvenance_set_value(self, *args)
14324 
14325 
14326  def remove_attribute(self, *args):
14327  """
14328  remove_attribute(CombineProvenance self, FloatKey a0)
14329  remove_attribute(CombineProvenance self, IntKey a0)
14330  remove_attribute(CombineProvenance self, StringKey a0)
14331  remove_attribute(CombineProvenance self, ParticleIndexKey a0)
14332  remove_attribute(CombineProvenance self, ObjectKey a0)
14333  """
14334  return _IMP_core.CombineProvenance_remove_attribute(self, *args)
14335 
14336 
14337  def has_attribute(self, *args):
14338  """
14339  has_attribute(CombineProvenance self, FloatKey a0) -> bool
14340  has_attribute(CombineProvenance self, IntKey a0) -> bool
14341  has_attribute(CombineProvenance self, StringKey a0) -> bool
14342  has_attribute(CombineProvenance self, ParticleIndexKey a0) -> bool
14343  has_attribute(CombineProvenance self, ObjectKey a0) -> bool
14344  """
14345  return _IMP_core.CombineProvenance_has_attribute(self, *args)
14346 
14347 
14348  def get_derivative(self, a0):
14349  """get_derivative(CombineProvenance self, FloatKey a0) -> double"""
14350  return _IMP_core.CombineProvenance_get_derivative(self, a0)
14351 
14352 
14353  def get_name(self):
14354  """get_name(CombineProvenance self) -> std::string"""
14355  return _IMP_core.CombineProvenance_get_name(self)
14356 
14357 
14358  def clear_caches(self):
14359  """clear_caches(CombineProvenance self)"""
14360  return _IMP_core.CombineProvenance_clear_caches(self)
14361 
14362 
14363  def set_name(self, a0):
14364  """set_name(CombineProvenance self, std::string a0)"""
14365  return _IMP_core.CombineProvenance_set_name(self, a0)
14366 
14367 
14368  def set_check_level(self, a0):
14369  """set_check_level(CombineProvenance self, IMP::CheckLevel a0)"""
14370  return _IMP_core.CombineProvenance_set_check_level(self, a0)
14371 
14372 
14373  def add_to_derivative(self, a0, a1, a2):
14374  """add_to_derivative(CombineProvenance self, FloatKey a0, double a1, DerivativeAccumulator a2)"""
14375  return _IMP_core.CombineProvenance_add_to_derivative(self, a0, a1, a2)
14376 
14377 
14378  def set_is_optimized(self, a0, a1):
14379  """set_is_optimized(CombineProvenance self, FloatKey a0, bool a1)"""
14380  return _IMP_core.CombineProvenance_set_is_optimized(self, a0, a1)
14381 
14382 
14383  def get_is_optimized(self, a0):
14384  """get_is_optimized(CombineProvenance self, FloatKey a0) -> bool"""
14385  return _IMP_core.CombineProvenance_get_is_optimized(self, a0)
14386 
14387 
14388  def get_check_level(self):
14389  """get_check_level(CombineProvenance self) -> IMP::CheckLevel"""
14390  return _IMP_core.CombineProvenance_get_check_level(self)
14391 
14392 
14393  def __eq__(self, *args):
14394  """
14395  __eq__(CombineProvenance self, CombineProvenance o) -> bool
14396  __eq__(CombineProvenance self, Particle d) -> bool
14397  """
14398  return _IMP_core.CombineProvenance___eq__(self, *args)
14399 
14400 
14401  def __ne__(self, *args):
14402  """
14403  __ne__(CombineProvenance self, CombineProvenance o) -> bool
14404  __ne__(CombineProvenance self, Particle d) -> bool
14405  """
14406  return _IMP_core.CombineProvenance___ne__(self, *args)
14407 
14408 
14409  def __le__(self, *args):
14410  """
14411  __le__(CombineProvenance self, CombineProvenance o) -> bool
14412  __le__(CombineProvenance self, Particle d) -> bool
14413  """
14414  return _IMP_core.CombineProvenance___le__(self, *args)
14415 
14416 
14417  def __lt__(self, *args):
14418  """
14419  __lt__(CombineProvenance self, CombineProvenance o) -> bool
14420  __lt__(CombineProvenance self, Particle d) -> bool
14421  """
14422  return _IMP_core.CombineProvenance___lt__(self, *args)
14423 
14424 
14425  def __ge__(self, *args):
14426  """
14427  __ge__(CombineProvenance self, CombineProvenance o) -> bool
14428  __ge__(CombineProvenance self, Particle d) -> bool
14429  """
14430  return _IMP_core.CombineProvenance___ge__(self, *args)
14431 
14432 
14433  def __gt__(self, *args):
14434  """
14435  __gt__(CombineProvenance self, CombineProvenance o) -> bool
14436  __gt__(CombineProvenance self, Particle d) -> bool
14437  """
14438  return _IMP_core.CombineProvenance___gt__(self, *args)
14439 
14440 
14441  def __hash__(self):
14442  """__hash__(CombineProvenance self) -> std::size_t"""
14443  return _IMP_core.CombineProvenance___hash__(self)
14444 
14445 
14446  def __str__(self):
14447  """__str__(CombineProvenance self) -> std::string"""
14448  return _IMP_core.CombineProvenance___str__(self)
14449 
14450 
14451  def __repr__(self):
14452  """__repr__(CombineProvenance self) -> std::string"""
14453  return _IMP_core.CombineProvenance___repr__(self)
14454 
14455  __swig_destroy__ = _IMP_core.delete_CombineProvenance
14456  __del__ = lambda self: None
14457 CombineProvenance_swigregister = _IMP_core.CombineProvenance_swigregister
14458 CombineProvenance_swigregister(CombineProvenance)
14459 
14460 def CombineProvenance_get_is_setup(*args):
14461  """
14462  get_is_setup(Model m, ParticleIndex pi) -> bool
14463  CombineProvenance_get_is_setup(_ParticleAdaptor p) -> bool
14464  """
14465  return _IMP_core.CombineProvenance_get_is_setup(*args)
14466 
14467 def CombineProvenance_setup_particle(*args):
14468  """
14469  setup_particle(Model m, ParticleIndex pi, int runs, int frames) -> CombineProvenance
14470  setup_particle(_ParticleAdaptor decorator, int runs, int frames) -> CombineProvenance
14471  setup_particle(Model m, ParticleIndex pi, CombineProvenance o) -> CombineProvenance
14472  CombineProvenance_setup_particle(_ParticleAdaptor decorator, CombineProvenance o) -> CombineProvenance
14473  """
14474  return _IMP_core.CombineProvenance_setup_particle(*args)
14475 
14476 class FilterProvenance(Provenance):
14477  """Proxy of C++ IMP::core::FilterProvenance class."""
14478 
14479  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
14480 
14481  def set_method(self, method):
14482  """set_method(FilterProvenance self, std::string method)"""
14483  return _IMP_core.FilterProvenance_set_method(self, method)
14484 
14485 
14486  def get_method(self):
14487  """get_method(FilterProvenance self) -> std::string"""
14488  return _IMP_core.FilterProvenance_get_method(self)
14489 
14490 
14491  def set_number_of_frames(self, frames):
14492  """set_number_of_frames(FilterProvenance self, int frames)"""
14493  return _IMP_core.FilterProvenance_set_number_of_frames(self, frames)
14494 
14495 
14496  def get_number_of_frames(self):
14497  """get_number_of_frames(FilterProvenance self) -> int"""
14498  return _IMP_core.FilterProvenance_get_number_of_frames(self)
14499 
14500 
14501  def set_threshold(self, threshold):
14502  """set_threshold(FilterProvenance self, double threshold)"""
14503  return _IMP_core.FilterProvenance_set_threshold(self, threshold)
14504 
14505 
14506  def get_threshold(self):
14507  """get_threshold(FilterProvenance self) -> double"""
14508  return _IMP_core.FilterProvenance_get_threshold(self)
14509 
14510 
14511  def __init__(self, *args):
14512  """
14513  __init__(IMP::core::FilterProvenance self) -> FilterProvenance
14514  __init__(IMP::core::FilterProvenance self, Model m, ParticleIndex id) -> FilterProvenance
14515  __init__(IMP::core::FilterProvenance self, _ParticleAdaptor d) -> FilterProvenance
14516  """
14517  this = _IMP_core.new_FilterProvenance(*args)
14518  try:
14519  self.this.append(this)
14520  except __builtin__.Exception:
14521  self.this = this
14522 
14523  def get_is_setup(*args):
14524  """
14525  get_is_setup(Model m, ParticleIndex pi) -> bool
14526  get_is_setup(_ParticleAdaptor p) -> bool
14527  """
14528  return _IMP_core.FilterProvenance_get_is_setup(*args)
14529 
14530  get_is_setup = staticmethod(get_is_setup)
14531 
14532  def show(self, *args):
14533  """
14534  show(FilterProvenance self, _ostream out)
14535  show(FilterProvenance self)
14536  """
14537  return _IMP_core.FilterProvenance_show(self, *args)
14538 
14539 
14540  def setup_particle(*args):
14541  """
14542  setup_particle(Model m, ParticleIndex pi, std::string method, double threshold, int frames) -> FilterProvenance
14543  setup_particle(_ParticleAdaptor decorator, std::string method, double threshold, int frames) -> FilterProvenance
14544  setup_particle(Model m, ParticleIndex pi, FilterProvenance o) -> FilterProvenance
14545  setup_particle(_ParticleAdaptor decorator, FilterProvenance o) -> FilterProvenance
14546  """
14547  return _IMP_core.FilterProvenance_setup_particle(*args)
14548 
14549  setup_particle = staticmethod(setup_particle)
14550 
14551  def add_attribute(self, *args):
14552  """
14553  add_attribute(FilterProvenance self, FloatKey k, IMP::Float v, bool opt)
14554  add_attribute(FilterProvenance self, FloatKey a0, IMP::Float a1)
14555  add_attribute(FilterProvenance self, IntKey a0, IMP::Int a1)
14556  add_attribute(FilterProvenance self, StringKey a0, IMP::String a1)
14557  add_attribute(FilterProvenance self, ParticleIndexKey a0, Particle a1)
14558  add_attribute(FilterProvenance self, ObjectKey a0, Object a1)
14559  """
14560  return _IMP_core.FilterProvenance_add_attribute(self, *args)
14561 
14562 
14563  def get_value(self, *args):
14564  """
14565  get_value(FilterProvenance self, FloatKey a0) -> IMP::Float
14566  get_value(FilterProvenance self, IntKey a0) -> IMP::Int
14567  get_value(FilterProvenance self, StringKey a0) -> IMP::String
14568  get_value(FilterProvenance self, ParticleIndexKey a0) -> Particle
14569  get_value(FilterProvenance self, ObjectKey a0) -> Object
14570  """
14571  return _IMP_core.FilterProvenance_get_value(self, *args)
14572 
14573 
14574  def set_value(self, *args):
14575  """
14576  set_value(FilterProvenance self, FloatKey a0, IMP::Float a1)
14577  set_value(FilterProvenance self, IntKey a0, IMP::Int a1)
14578  set_value(FilterProvenance self, StringKey a0, IMP::String a1)
14579  set_value(FilterProvenance self, ParticleIndexKey a0, Particle a1)
14580  set_value(FilterProvenance self, ObjectKey a0, Object a1)
14581  """
14582  return _IMP_core.FilterProvenance_set_value(self, *args)
14583 
14584 
14585  def remove_attribute(self, *args):
14586  """
14587  remove_attribute(FilterProvenance self, FloatKey a0)
14588  remove_attribute(FilterProvenance self, IntKey a0)
14589  remove_attribute(FilterProvenance self, StringKey a0)
14590  remove_attribute(FilterProvenance self, ParticleIndexKey a0)
14591  remove_attribute(FilterProvenance self, ObjectKey a0)
14592  """
14593  return _IMP_core.FilterProvenance_remove_attribute(self, *args)
14594 
14595 
14596  def has_attribute(self, *args):
14597  """
14598  has_attribute(FilterProvenance self, FloatKey a0) -> bool
14599  has_attribute(FilterProvenance self, IntKey a0) -> bool
14600  has_attribute(FilterProvenance self, StringKey a0) -> bool
14601  has_attribute(FilterProvenance self, ParticleIndexKey a0) -> bool
14602  has_attribute(FilterProvenance self, ObjectKey a0) -> bool
14603  """
14604  return _IMP_core.FilterProvenance_has_attribute(self, *args)
14605 
14606 
14607  def get_derivative(self, a0):
14608  """get_derivative(FilterProvenance self, FloatKey a0) -> double"""
14609  return _IMP_core.FilterProvenance_get_derivative(self, a0)
14610 
14611 
14612  def get_name(self):
14613  """get_name(FilterProvenance self) -> std::string"""
14614  return _IMP_core.FilterProvenance_get_name(self)
14615 
14616 
14617  def clear_caches(self):
14618  """clear_caches(FilterProvenance self)"""
14619  return _IMP_core.FilterProvenance_clear_caches(self)
14620 
14621 
14622  def set_name(self, a0):
14623  """set_name(FilterProvenance self, std::string a0)"""
14624  return _IMP_core.FilterProvenance_set_name(self, a0)
14625 
14626 
14627  def set_check_level(self, a0):
14628  """set_check_level(FilterProvenance self, IMP::CheckLevel a0)"""
14629  return _IMP_core.FilterProvenance_set_check_level(self, a0)
14630 
14631 
14632  def add_to_derivative(self, a0, a1, a2):
14633  """add_to_derivative(FilterProvenance self, FloatKey a0, double a1, DerivativeAccumulator a2)"""
14634  return _IMP_core.FilterProvenance_add_to_derivative(self, a0, a1, a2)
14635 
14636 
14637  def set_is_optimized(self, a0, a1):
14638  """set_is_optimized(FilterProvenance self, FloatKey a0, bool a1)"""
14639  return _IMP_core.FilterProvenance_set_is_optimized(self, a0, a1)
14640 
14641 
14642  def get_is_optimized(self, a0):
14643  """get_is_optimized(FilterProvenance self, FloatKey a0) -> bool"""
14644  return _IMP_core.FilterProvenance_get_is_optimized(self, a0)
14645 
14646 
14647  def get_check_level(self):
14648  """get_check_level(FilterProvenance self) -> IMP::CheckLevel"""
14649  return _IMP_core.FilterProvenance_get_check_level(self)
14650 
14651 
14652  def __eq__(self, *args):
14653  """
14654  __eq__(FilterProvenance self, FilterProvenance o) -> bool
14655  __eq__(FilterProvenance self, Particle d) -> bool
14656  """
14657  return _IMP_core.FilterProvenance___eq__(self, *args)
14658 
14659 
14660  def __ne__(self, *args):
14661  """
14662  __ne__(FilterProvenance self, FilterProvenance o) -> bool
14663  __ne__(FilterProvenance self, Particle d) -> bool
14664  """
14665  return _IMP_core.FilterProvenance___ne__(self, *args)
14666 
14667 
14668  def __le__(self, *args):
14669  """
14670  __le__(FilterProvenance self, FilterProvenance o) -> bool
14671  __le__(FilterProvenance self, Particle d) -> bool
14672  """
14673  return _IMP_core.FilterProvenance___le__(self, *args)
14674 
14675 
14676  def __lt__(self, *args):
14677  """
14678  __lt__(FilterProvenance self, FilterProvenance o) -> bool
14679  __lt__(FilterProvenance self, Particle d) -> bool
14680  """
14681  return _IMP_core.FilterProvenance___lt__(self, *args)
14682 
14683 
14684  def __ge__(self, *args):
14685  """
14686  __ge__(FilterProvenance self, FilterProvenance o) -> bool
14687  __ge__(FilterProvenance self, Particle d) -> bool
14688  """
14689  return _IMP_core.FilterProvenance___ge__(self, *args)
14690 
14691 
14692  def __gt__(self, *args):
14693  """
14694  __gt__(FilterProvenance self, FilterProvenance o) -> bool
14695  __gt__(FilterProvenance self, Particle d) -> bool
14696  """
14697  return _IMP_core.FilterProvenance___gt__(self, *args)
14698 
14699 
14700  def __hash__(self):
14701  """__hash__(FilterProvenance self) -> std::size_t"""
14702  return _IMP_core.FilterProvenance___hash__(self)
14703 
14704 
14705  def __str__(self):
14706  """__str__(FilterProvenance self) -> std::string"""
14707  return _IMP_core.FilterProvenance___str__(self)
14708 
14709 
14710  def __repr__(self):
14711  """__repr__(FilterProvenance self) -> std::string"""
14712  return _IMP_core.FilterProvenance___repr__(self)
14713 
14714  __swig_destroy__ = _IMP_core.delete_FilterProvenance
14715  __del__ = lambda self: None
14716 FilterProvenance_swigregister = _IMP_core.FilterProvenance_swigregister
14717 FilterProvenance_swigregister(FilterProvenance)
14718 
14719 def FilterProvenance_get_is_setup(*args):
14720  """
14721  get_is_setup(Model m, ParticleIndex pi) -> bool
14722  FilterProvenance_get_is_setup(_ParticleAdaptor p) -> bool
14723  """
14724  return _IMP_core.FilterProvenance_get_is_setup(*args)
14725 
14726 def FilterProvenance_setup_particle(*args):
14727  """
14728  setup_particle(Model m, ParticleIndex pi, std::string method, double threshold, int frames) -> FilterProvenance
14729  setup_particle(_ParticleAdaptor decorator, std::string method, double threshold, int frames) -> FilterProvenance
14730  setup_particle(Model m, ParticleIndex pi, FilterProvenance o) -> FilterProvenance
14731  FilterProvenance_setup_particle(_ParticleAdaptor decorator, FilterProvenance o) -> FilterProvenance
14732  """
14733  return _IMP_core.FilterProvenance_setup_particle(*args)
14734 
14735 class ClusterProvenance(Provenance):
14736  """Proxy of C++ IMP::core::ClusterProvenance class."""
14737 
14738  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
14739 
14740  def set_number_of_members(self, members):
14741  """set_number_of_members(ClusterProvenance self, int members)"""
14742  return _IMP_core.ClusterProvenance_set_number_of_members(self, members)
14743 
14744 
14745  def get_number_of_members(self):
14746  """get_number_of_members(ClusterProvenance self) -> int"""
14747  return _IMP_core.ClusterProvenance_get_number_of_members(self)
14748 
14749 
14750  def __init__(self, *args):
14751  """
14752  __init__(IMP::core::ClusterProvenance self) -> ClusterProvenance
14753  __init__(IMP::core::ClusterProvenance self, Model m, ParticleIndex id) -> ClusterProvenance
14754  __init__(IMP::core::ClusterProvenance self, _ParticleAdaptor d) -> ClusterProvenance
14755  """
14756  this = _IMP_core.new_ClusterProvenance(*args)
14757  try:
14758  self.this.append(this)
14759  except __builtin__.Exception:
14760  self.this = this
14761 
14762  def get_is_setup(*args):
14763  """
14764  get_is_setup(Model m, ParticleIndex pi) -> bool
14765  get_is_setup(_ParticleAdaptor p) -> bool
14766  """
14767  return _IMP_core.ClusterProvenance_get_is_setup(*args)
14768 
14769  get_is_setup = staticmethod(get_is_setup)
14770 
14771  def show(self, *args):
14772  """
14773  show(ClusterProvenance self, _ostream out)
14774  show(ClusterProvenance self)
14775  """
14776  return _IMP_core.ClusterProvenance_show(self, *args)
14777 
14778 
14779  def setup_particle(*args):
14780  """
14781  setup_particle(Model m, ParticleIndex pi, int members) -> ClusterProvenance
14782  setup_particle(_ParticleAdaptor decorator, int members) -> ClusterProvenance
14783  setup_particle(Model m, ParticleIndex pi, ClusterProvenance o) -> ClusterProvenance
14784  setup_particle(_ParticleAdaptor decorator, ClusterProvenance o) -> ClusterProvenance
14785  """
14786  return _IMP_core.ClusterProvenance_setup_particle(*args)
14787 
14788  setup_particle = staticmethod(setup_particle)
14789 
14790  def add_attribute(self, *args):
14791  """
14792  add_attribute(ClusterProvenance self, FloatKey k, IMP::Float v, bool opt)
14793  add_attribute(ClusterProvenance self, FloatKey a0, IMP::Float a1)
14794  add_attribute(ClusterProvenance self, IntKey a0, IMP::Int a1)
14795  add_attribute(ClusterProvenance self, StringKey a0, IMP::String a1)
14796  add_attribute(ClusterProvenance self, ParticleIndexKey a0, Particle a1)
14797  add_attribute(ClusterProvenance self, ObjectKey a0, Object a1)
14798  """
14799  return _IMP_core.ClusterProvenance_add_attribute(self, *args)
14800 
14801 
14802  def get_value(self, *args):
14803  """
14804  get_value(ClusterProvenance self, FloatKey a0) -> IMP::Float
14805  get_value(ClusterProvenance self, IntKey a0) -> IMP::Int
14806  get_value(ClusterProvenance self, StringKey a0) -> IMP::String
14807  get_value(ClusterProvenance self, ParticleIndexKey a0) -> Particle
14808  get_value(ClusterProvenance self, ObjectKey a0) -> Object
14809  """
14810  return _IMP_core.ClusterProvenance_get_value(self, *args)
14811 
14812 
14813  def set_value(self, *args):
14814  """
14815  set_value(ClusterProvenance self, FloatKey a0, IMP::Float a1)
14816  set_value(ClusterProvenance self, IntKey a0, IMP::Int a1)
14817  set_value(ClusterProvenance self, StringKey a0, IMP::String a1)
14818  set_value(ClusterProvenance self, ParticleIndexKey a0, Particle a1)
14819  set_value(ClusterProvenance self, ObjectKey a0, Object a1)
14820  """
14821  return _IMP_core.ClusterProvenance_set_value(self, *args)
14822 
14823 
14824  def remove_attribute(self, *args):
14825  """
14826  remove_attribute(ClusterProvenance self, FloatKey a0)
14827  remove_attribute(ClusterProvenance self, IntKey a0)
14828  remove_attribute(ClusterProvenance self, StringKey a0)
14829  remove_attribute(ClusterProvenance self, ParticleIndexKey a0)
14830  remove_attribute(ClusterProvenance self, ObjectKey a0)
14831  """
14832  return _IMP_core.ClusterProvenance_remove_attribute(self, *args)
14833 
14834 
14835  def has_attribute(self, *args):
14836  """
14837  has_attribute(ClusterProvenance self, FloatKey a0) -> bool
14838  has_attribute(ClusterProvenance self, IntKey a0) -> bool
14839  has_attribute(ClusterProvenance self, StringKey a0) -> bool
14840  has_attribute(ClusterProvenance self, ParticleIndexKey a0) -> bool
14841  has_attribute(ClusterProvenance self, ObjectKey a0) -> bool
14842  """
14843  return _IMP_core.ClusterProvenance_has_attribute(self, *args)
14844 
14845 
14846  def get_derivative(self, a0):
14847  """get_derivative(ClusterProvenance self, FloatKey a0) -> double"""
14848  return _IMP_core.ClusterProvenance_get_derivative(self, a0)
14849 
14850 
14851  def get_name(self):
14852  """get_name(ClusterProvenance self) -> std::string"""
14853  return _IMP_core.ClusterProvenance_get_name(self)
14854 
14855 
14856  def clear_caches(self):
14857  """clear_caches(ClusterProvenance self)"""
14858  return _IMP_core.ClusterProvenance_clear_caches(self)
14859 
14860 
14861  def set_name(self, a0):
14862  """set_name(ClusterProvenance self, std::string a0)"""
14863  return _IMP_core.ClusterProvenance_set_name(self, a0)
14864 
14865 
14866  def set_check_level(self, a0):
14867  """set_check_level(ClusterProvenance self, IMP::CheckLevel a0)"""
14868  return _IMP_core.ClusterProvenance_set_check_level(self, a0)
14869 
14870 
14871  def add_to_derivative(self, a0, a1, a2):
14872  """add_to_derivative(ClusterProvenance self, FloatKey a0, double a1, DerivativeAccumulator a2)"""
14873  return _IMP_core.ClusterProvenance_add_to_derivative(self, a0, a1, a2)
14874 
14875 
14876  def set_is_optimized(self, a0, a1):
14877  """set_is_optimized(ClusterProvenance self, FloatKey a0, bool a1)"""
14878  return _IMP_core.ClusterProvenance_set_is_optimized(self, a0, a1)
14879 
14880 
14881  def get_is_optimized(self, a0):
14882  """get_is_optimized(ClusterProvenance self, FloatKey a0) -> bool"""
14883  return _IMP_core.ClusterProvenance_get_is_optimized(self, a0)
14884 
14885 
14886  def get_check_level(self):
14887  """get_check_level(ClusterProvenance self) -> IMP::CheckLevel"""
14888  return _IMP_core.ClusterProvenance_get_check_level(self)
14889 
14890 
14891  def __eq__(self, *args):
14892  """
14893  __eq__(ClusterProvenance self, ClusterProvenance o) -> bool
14894  __eq__(ClusterProvenance self, Particle d) -> bool
14895  """
14896  return _IMP_core.ClusterProvenance___eq__(self, *args)
14897 
14898 
14899  def __ne__(self, *args):
14900  """
14901  __ne__(ClusterProvenance self, ClusterProvenance o) -> bool
14902  __ne__(ClusterProvenance self, Particle d) -> bool
14903  """
14904  return _IMP_core.ClusterProvenance___ne__(self, *args)
14905 
14906 
14907  def __le__(self, *args):
14908  """
14909  __le__(ClusterProvenance self, ClusterProvenance o) -> bool
14910  __le__(ClusterProvenance self, Particle d) -> bool
14911  """
14912  return _IMP_core.ClusterProvenance___le__(self, *args)
14913 
14914 
14915  def __lt__(self, *args):
14916  """
14917  __lt__(ClusterProvenance self, ClusterProvenance o) -> bool
14918  __lt__(ClusterProvenance self, Particle d) -> bool
14919  """
14920  return _IMP_core.ClusterProvenance___lt__(self, *args)
14921 
14922 
14923  def __ge__(self, *args):
14924  """
14925  __ge__(ClusterProvenance self, ClusterProvenance o) -> bool
14926  __ge__(ClusterProvenance self, Particle d) -> bool
14927  """
14928  return _IMP_core.ClusterProvenance___ge__(self, *args)
14929 
14930 
14931  def __gt__(self, *args):
14932  """
14933  __gt__(ClusterProvenance self, ClusterProvenance o) -> bool
14934  __gt__(ClusterProvenance self, Particle d) -> bool
14935  """
14936  return _IMP_core.ClusterProvenance___gt__(self, *args)
14937 
14938 
14939  def __hash__(self):
14940  """__hash__(ClusterProvenance self) -> std::size_t"""
14941  return _IMP_core.ClusterProvenance___hash__(self)
14942 
14943 
14944  def __str__(self):
14945  """__str__(ClusterProvenance self) -> std::string"""
14946  return _IMP_core.ClusterProvenance___str__(self)
14947 
14948 
14949  def __repr__(self):
14950  """__repr__(ClusterProvenance self) -> std::string"""
14951  return _IMP_core.ClusterProvenance___repr__(self)
14952 
14953  __swig_destroy__ = _IMP_core.delete_ClusterProvenance
14954  __del__ = lambda self: None
14955 ClusterProvenance_swigregister = _IMP_core.ClusterProvenance_swigregister
14956 ClusterProvenance_swigregister(ClusterProvenance)
14957 
14958 def ClusterProvenance_get_is_setup(*args):
14959  """
14960  get_is_setup(Model m, ParticleIndex pi) -> bool
14961  ClusterProvenance_get_is_setup(_ParticleAdaptor p) -> bool
14962  """
14963  return _IMP_core.ClusterProvenance_get_is_setup(*args)
14964 
14965 def ClusterProvenance_setup_particle(*args):
14966  """
14967  setup_particle(Model m, ParticleIndex pi, int members) -> ClusterProvenance
14968  setup_particle(_ParticleAdaptor decorator, int members) -> ClusterProvenance
14969  setup_particle(Model m, ParticleIndex pi, ClusterProvenance o) -> ClusterProvenance
14970  ClusterProvenance_setup_particle(_ParticleAdaptor decorator, ClusterProvenance o) -> ClusterProvenance
14971  """
14972  return _IMP_core.ClusterProvenance_setup_particle(*args)
14973 
14974 class ScriptProvenance(Provenance):
14975  """Proxy of C++ IMP::core::ScriptProvenance class."""
14976 
14977  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
14978 
14979  def set_filename(self, filename):
14980  """set_filename(ScriptProvenance self, std::string filename)"""
14981  return _IMP_core.ScriptProvenance_set_filename(self, filename)
14982 
14983 
14984  def get_filename(self):
14985  """get_filename(ScriptProvenance self) -> std::string"""
14986  return _IMP_core.ScriptProvenance_get_filename(self)
14987 
14988 
14989  def __init__(self, *args):
14990  """
14991  __init__(IMP::core::ScriptProvenance self) -> ScriptProvenance
14992  __init__(IMP::core::ScriptProvenance self, Model m, ParticleIndex id) -> ScriptProvenance
14993  __init__(IMP::core::ScriptProvenance self, _ParticleAdaptor d) -> ScriptProvenance
14994  """
14995  this = _IMP_core.new_ScriptProvenance(*args)
14996  try:
14997  self.this.append(this)
14998  except __builtin__.Exception:
14999  self.this = this
15000 
15001  def get_is_setup(*args):
15002  """
15003  get_is_setup(Model m, ParticleIndex pi) -> bool
15004  get_is_setup(_ParticleAdaptor p) -> bool
15005  """
15006  return _IMP_core.ScriptProvenance_get_is_setup(*args)
15007 
15008  get_is_setup = staticmethod(get_is_setup)
15009 
15010  def show(self, *args):
15011  """
15012  show(ScriptProvenance self, _ostream out)
15013  show(ScriptProvenance self)
15014  """
15015  return _IMP_core.ScriptProvenance_show(self, *args)
15016 
15017 
15018  def setup_particle(*args):
15019  """
15020  setup_particle(Model m, ParticleIndex pi, std::string filename) -> ScriptProvenance
15021  setup_particle(_ParticleAdaptor decorator, std::string filename) -> ScriptProvenance
15022  setup_particle(Model m, ParticleIndex pi, ScriptProvenance o) -> ScriptProvenance
15023  setup_particle(_ParticleAdaptor decorator, ScriptProvenance o) -> ScriptProvenance
15024  """
15025  return _IMP_core.ScriptProvenance_setup_particle(*args)
15026 
15027  setup_particle = staticmethod(setup_particle)
15028 
15029  def add_attribute(self, *args):
15030  """
15031  add_attribute(ScriptProvenance self, FloatKey k, IMP::Float v, bool opt)
15032  add_attribute(ScriptProvenance self, FloatKey a0, IMP::Float a1)
15033  add_attribute(ScriptProvenance self, IntKey a0, IMP::Int a1)
15034  add_attribute(ScriptProvenance self, StringKey a0, IMP::String a1)
15035  add_attribute(ScriptProvenance self, ParticleIndexKey a0, Particle a1)
15036  add_attribute(ScriptProvenance self, ObjectKey a0, Object a1)
15037  """
15038  return _IMP_core.ScriptProvenance_add_attribute(self, *args)
15039 
15040 
15041  def get_value(self, *args):
15042  """
15043  get_value(ScriptProvenance self, FloatKey a0) -> IMP::Float
15044  get_value(ScriptProvenance self, IntKey a0) -> IMP::Int
15045  get_value(ScriptProvenance self, StringKey a0) -> IMP::String
15046  get_value(ScriptProvenance self, ParticleIndexKey a0) -> Particle
15047  get_value(ScriptProvenance self, ObjectKey a0) -> Object
15048  """
15049  return _IMP_core.ScriptProvenance_get_value(self, *args)
15050 
15051 
15052  def set_value(self, *args):
15053  """
15054  set_value(ScriptProvenance self, FloatKey a0, IMP::Float a1)
15055  set_value(ScriptProvenance self, IntKey a0, IMP::Int a1)
15056  set_value(ScriptProvenance self, StringKey a0, IMP::String a1)
15057  set_value(ScriptProvenance self, ParticleIndexKey a0, Particle a1)
15058  set_value(ScriptProvenance self, ObjectKey a0, Object a1)
15059  """
15060  return _IMP_core.ScriptProvenance_set_value(self, *args)
15061 
15062 
15063  def remove_attribute(self, *args):
15064  """
15065  remove_attribute(ScriptProvenance self, FloatKey a0)
15066  remove_attribute(ScriptProvenance self, IntKey a0)
15067  remove_attribute(ScriptProvenance self, StringKey a0)
15068  remove_attribute(ScriptProvenance self, ParticleIndexKey a0)
15069  remove_attribute(ScriptProvenance self, ObjectKey a0)
15070  """
15071  return _IMP_core.ScriptProvenance_remove_attribute(self, *args)
15072 
15073 
15074  def has_attribute(self, *args):
15075  """
15076  has_attribute(ScriptProvenance self, FloatKey a0) -> bool
15077  has_attribute(ScriptProvenance self, IntKey a0) -> bool
15078  has_attribute(ScriptProvenance self, StringKey a0) -> bool
15079  has_attribute(ScriptProvenance self, ParticleIndexKey a0) -> bool
15080  has_attribute(ScriptProvenance self, ObjectKey a0) -> bool
15081  """
15082  return _IMP_core.ScriptProvenance_has_attribute(self, *args)
15083 
15084 
15085  def get_derivative(self, a0):
15086  """get_derivative(ScriptProvenance self, FloatKey a0) -> double"""
15087  return _IMP_core.ScriptProvenance_get_derivative(self, a0)
15088 
15089 
15090  def get_name(self):
15091  """get_name(ScriptProvenance self) -> std::string"""
15092  return _IMP_core.ScriptProvenance_get_name(self)
15093 
15094 
15095  def clear_caches(self):
15096  """clear_caches(ScriptProvenance self)"""
15097  return _IMP_core.ScriptProvenance_clear_caches(self)
15098 
15099 
15100  def set_name(self, a0):
15101  """set_name(ScriptProvenance self, std::string a0)"""
15102  return _IMP_core.ScriptProvenance_set_name(self, a0)
15103 
15104 
15105  def set_check_level(self, a0):
15106  """set_check_level(ScriptProvenance self, IMP::CheckLevel a0)"""
15107  return _IMP_core.ScriptProvenance_set_check_level(self, a0)
15108 
15109 
15110  def add_to_derivative(self, a0, a1, a2):
15111  """add_to_derivative(ScriptProvenance self, FloatKey a0, double a1, DerivativeAccumulator a2)"""
15112  return _IMP_core.ScriptProvenance_add_to_derivative(self, a0, a1, a2)
15113 
15114 
15115  def set_is_optimized(self, a0, a1):
15116  """set_is_optimized(ScriptProvenance self, FloatKey a0, bool a1)"""
15117  return _IMP_core.ScriptProvenance_set_is_optimized(self, a0, a1)
15118 
15119 
15120  def get_is_optimized(self, a0):
15121  """get_is_optimized(ScriptProvenance self, FloatKey a0) -> bool"""
15122  return _IMP_core.ScriptProvenance_get_is_optimized(self, a0)
15123 
15124 
15125  def get_check_level(self):
15126  """get_check_level(ScriptProvenance self) -> IMP::CheckLevel"""
15127  return _IMP_core.ScriptProvenance_get_check_level(self)
15128 
15129 
15130  def __eq__(self, *args):
15131  """
15132  __eq__(ScriptProvenance self, ScriptProvenance o) -> bool
15133  __eq__(ScriptProvenance self, Particle d) -> bool
15134  """
15135  return _IMP_core.ScriptProvenance___eq__(self, *args)
15136 
15137 
15138  def __ne__(self, *args):
15139  """
15140  __ne__(ScriptProvenance self, ScriptProvenance o) -> bool
15141  __ne__(ScriptProvenance self, Particle d) -> bool
15142  """
15143  return _IMP_core.ScriptProvenance___ne__(self, *args)
15144 
15145 
15146  def __le__(self, *args):
15147  """
15148  __le__(ScriptProvenance self, ScriptProvenance o) -> bool
15149  __le__(ScriptProvenance self, Particle d) -> bool
15150  """
15151  return _IMP_core.ScriptProvenance___le__(self, *args)
15152 
15153 
15154  def __lt__(self, *args):
15155  """
15156  __lt__(ScriptProvenance self, ScriptProvenance o) -> bool
15157  __lt__(ScriptProvenance self, Particle d) -> bool
15158  """
15159  return _IMP_core.ScriptProvenance___lt__(self, *args)
15160 
15161 
15162  def __ge__(self, *args):
15163  """
15164  __ge__(ScriptProvenance self, ScriptProvenance o) -> bool
15165  __ge__(ScriptProvenance self, Particle d) -> bool
15166  """
15167  return _IMP_core.ScriptProvenance___ge__(self, *args)
15168 
15169 
15170  def __gt__(self, *args):
15171  """
15172  __gt__(ScriptProvenance self, ScriptProvenance o) -> bool
15173  __gt__(ScriptProvenance self, Particle d) -> bool
15174  """
15175  return _IMP_core.ScriptProvenance___gt__(self, *args)
15176 
15177 
15178  def __hash__(self):
15179  """__hash__(ScriptProvenance self) -> std::size_t"""
15180  return _IMP_core.ScriptProvenance___hash__(self)
15181 
15182 
15183  def __str__(self):
15184  """__str__(ScriptProvenance self) -> std::string"""
15185  return _IMP_core.ScriptProvenance___str__(self)
15186 
15187 
15188  def __repr__(self):
15189  """__repr__(ScriptProvenance self) -> std::string"""
15190  return _IMP_core.ScriptProvenance___repr__(self)
15191 
15192  __swig_destroy__ = _IMP_core.delete_ScriptProvenance
15193  __del__ = lambda self: None
15194 ScriptProvenance_swigregister = _IMP_core.ScriptProvenance_swigregister
15195 ScriptProvenance_swigregister(ScriptProvenance)
15196 
15197 def ScriptProvenance_get_is_setup(*args):
15198  """
15199  get_is_setup(Model m, ParticleIndex pi) -> bool
15200  ScriptProvenance_get_is_setup(_ParticleAdaptor p) -> bool
15201  """
15202  return _IMP_core.ScriptProvenance_get_is_setup(*args)
15203 
15204 def ScriptProvenance_setup_particle(*args):
15205  """
15206  setup_particle(Model m, ParticleIndex pi, std::string filename) -> ScriptProvenance
15207  setup_particle(_ParticleAdaptor decorator, std::string filename) -> ScriptProvenance
15208  setup_particle(Model m, ParticleIndex pi, ScriptProvenance o) -> ScriptProvenance
15209  ScriptProvenance_setup_particle(_ParticleAdaptor decorator, ScriptProvenance o) -> ScriptProvenance
15210  """
15211  return _IMP_core.ScriptProvenance_setup_particle(*args)
15212 
15213 class SoftwareProvenance(Provenance):
15214  """Proxy of C++ IMP::core::SoftwareProvenance class."""
15215 
15216  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
15217 
15218  def set_software_name(self, name):
15219  """set_software_name(SoftwareProvenance self, std::string name)"""
15220  return _IMP_core.SoftwareProvenance_set_software_name(self, name)
15221 
15222 
15223  def get_software_name(self):
15224  """get_software_name(SoftwareProvenance self) -> std::string"""
15225  return _IMP_core.SoftwareProvenance_get_software_name(self)
15226 
15227 
15228  def set_version(self, version):
15229  """set_version(SoftwareProvenance self, std::string version)"""
15230  return _IMP_core.SoftwareProvenance_set_version(self, version)
15231 
15232 
15233  def get_version(self):
15234  """get_version(SoftwareProvenance self) -> std::string"""
15235  return _IMP_core.SoftwareProvenance_get_version(self)
15236 
15237 
15238  def set_location(self, location):
15239  """set_location(SoftwareProvenance self, std::string location)"""
15240  return _IMP_core.SoftwareProvenance_set_location(self, location)
15241 
15242 
15243  def get_location(self):
15244  """get_location(SoftwareProvenance self) -> std::string"""
15245  return _IMP_core.SoftwareProvenance_get_location(self)
15246 
15247 
15248  def __init__(self, *args):
15249  """
15250  __init__(IMP::core::SoftwareProvenance self) -> SoftwareProvenance
15251  __init__(IMP::core::SoftwareProvenance self, Model m, ParticleIndex id) -> SoftwareProvenance
15252  __init__(IMP::core::SoftwareProvenance self, _ParticleAdaptor d) -> SoftwareProvenance
15253  """
15254  this = _IMP_core.new_SoftwareProvenance(*args)
15255  try:
15256  self.this.append(this)
15257  except __builtin__.Exception:
15258  self.this = this
15259 
15260  def get_is_setup(*args):
15261  """
15262  get_is_setup(Model m, ParticleIndex pi) -> bool
15263  get_is_setup(_ParticleAdaptor p) -> bool
15264  """
15265  return _IMP_core.SoftwareProvenance_get_is_setup(*args)
15266 
15267  get_is_setup = staticmethod(get_is_setup)
15268 
15269  def show(self, *args):
15270  """
15271  show(SoftwareProvenance self, _ostream out)
15272  show(SoftwareProvenance self)
15273  """
15274  return _IMP_core.SoftwareProvenance_show(self, *args)
15275 
15276 
15277  def setup_particle(*args):
15278  """
15279  setup_particle(Model m, ParticleIndex pi, std::string name, std::string version, std::string location) -> SoftwareProvenance
15280  setup_particle(_ParticleAdaptor decorator, std::string name, std::string version, std::string location) -> SoftwareProvenance
15281  setup_particle(Model m, ParticleIndex pi, SoftwareProvenance o) -> SoftwareProvenance
15282  setup_particle(_ParticleAdaptor decorator, SoftwareProvenance o) -> SoftwareProvenance
15283  """
15284  return _IMP_core.SoftwareProvenance_setup_particle(*args)
15285 
15286  setup_particle = staticmethod(setup_particle)
15287 
15288  def add_attribute(self, *args):
15289  """
15290  add_attribute(SoftwareProvenance self, FloatKey k, IMP::Float v, bool opt)
15291  add_attribute(SoftwareProvenance self, FloatKey a0, IMP::Float a1)
15292  add_attribute(SoftwareProvenance self, IntKey a0, IMP::Int a1)
15293  add_attribute(SoftwareProvenance self, StringKey a0, IMP::String a1)
15294  add_attribute(SoftwareProvenance self, ParticleIndexKey a0, Particle a1)
15295  add_attribute(SoftwareProvenance self, ObjectKey a0, Object a1)
15296  """
15297  return _IMP_core.SoftwareProvenance_add_attribute(self, *args)
15298 
15299 
15300  def get_value(self, *args):
15301  """
15302  get_value(SoftwareProvenance self, FloatKey a0) -> IMP::Float
15303  get_value(SoftwareProvenance self, IntKey a0) -> IMP::Int
15304  get_value(SoftwareProvenance self, StringKey a0) -> IMP::String
15305  get_value(SoftwareProvenance self, ParticleIndexKey a0) -> Particle
15306  get_value(SoftwareProvenance self, ObjectKey a0) -> Object
15307  """
15308  return _IMP_core.SoftwareProvenance_get_value(self, *args)
15309 
15310 
15311  def set_value(self, *args):
15312  """
15313  set_value(SoftwareProvenance self, FloatKey a0, IMP::Float a1)
15314  set_value(SoftwareProvenance self, IntKey a0, IMP::Int a1)
15315  set_value(SoftwareProvenance self, StringKey a0, IMP::String a1)
15316  set_value(SoftwareProvenance self, ParticleIndexKey a0, Particle a1)
15317  set_value(SoftwareProvenance self, ObjectKey a0, Object a1)
15318  """
15319  return _IMP_core.SoftwareProvenance_set_value(self, *args)
15320 
15321 
15322  def remove_attribute(self, *args):
15323  """
15324  remove_attribute(SoftwareProvenance self, FloatKey a0)
15325  remove_attribute(SoftwareProvenance self, IntKey a0)
15326  remove_attribute(SoftwareProvenance self, StringKey a0)
15327  remove_attribute(SoftwareProvenance self, ParticleIndexKey a0)
15328  remove_attribute(SoftwareProvenance self, ObjectKey a0)
15329  """
15330  return _IMP_core.SoftwareProvenance_remove_attribute(self, *args)
15331 
15332 
15333  def has_attribute(self, *args):
15334  """
15335  has_attribute(SoftwareProvenance self, FloatKey a0) -> bool
15336  has_attribute(SoftwareProvenance self, IntKey a0) -> bool
15337  has_attribute(SoftwareProvenance self, StringKey a0) -> bool
15338  has_attribute(SoftwareProvenance self, ParticleIndexKey a0) -> bool
15339  has_attribute(SoftwareProvenance self, ObjectKey a0) -> bool
15340  """
15341  return _IMP_core.SoftwareProvenance_has_attribute(self, *args)
15342 
15343 
15344  def get_derivative(self, a0):
15345  """get_derivative(SoftwareProvenance self, FloatKey a0) -> double"""
15346  return _IMP_core.SoftwareProvenance_get_derivative(self, a0)
15347 
15348 
15349  def get_name(self):
15350  """get_name(SoftwareProvenance self) -> std::string"""
15351  return _IMP_core.SoftwareProvenance_get_name(self)
15352 
15353 
15354  def clear_caches(self):
15355  """clear_caches(SoftwareProvenance self)"""
15356  return _IMP_core.SoftwareProvenance_clear_caches(self)
15357 
15358 
15359  def set_name(self, a0):
15360  """set_name(SoftwareProvenance self, std::string a0)"""
15361  return _IMP_core.SoftwareProvenance_set_name(self, a0)
15362 
15363 
15364  def set_check_level(self, a0):
15365  """set_check_level(SoftwareProvenance self, IMP::CheckLevel a0)"""
15366  return _IMP_core.SoftwareProvenance_set_check_level(self, a0)
15367 
15368 
15369  def add_to_derivative(self, a0, a1, a2):
15370  """add_to_derivative(SoftwareProvenance self, FloatKey a0, double a1, DerivativeAccumulator a2)"""
15371  return _IMP_core.SoftwareProvenance_add_to_derivative(self, a0, a1, a2)
15372 
15373 
15374  def set_is_optimized(self, a0, a1):
15375  """set_is_optimized(SoftwareProvenance self, FloatKey a0, bool a1)"""
15376  return _IMP_core.SoftwareProvenance_set_is_optimized(self, a0, a1)
15377 
15378 
15379  def get_is_optimized(self, a0):
15380  """get_is_optimized(SoftwareProvenance self, FloatKey a0) -> bool"""
15381  return _IMP_core.SoftwareProvenance_get_is_optimized(self, a0)
15382 
15383 
15384  def get_check_level(self):
15385  """get_check_level(SoftwareProvenance self) -> IMP::CheckLevel"""
15386  return _IMP_core.SoftwareProvenance_get_check_level(self)
15387 
15388 
15389  def __eq__(self, *args):
15390  """
15391  __eq__(SoftwareProvenance self, SoftwareProvenance o) -> bool
15392  __eq__(SoftwareProvenance self, Particle d) -> bool
15393  """
15394  return _IMP_core.SoftwareProvenance___eq__(self, *args)
15395 
15396 
15397  def __ne__(self, *args):
15398  """
15399  __ne__(SoftwareProvenance self, SoftwareProvenance o) -> bool
15400  __ne__(SoftwareProvenance self, Particle d) -> bool
15401  """
15402  return _IMP_core.SoftwareProvenance___ne__(self, *args)
15403 
15404 
15405  def __le__(self, *args):
15406  """
15407  __le__(SoftwareProvenance self, SoftwareProvenance o) -> bool
15408  __le__(SoftwareProvenance self, Particle d) -> bool
15409  """
15410  return _IMP_core.SoftwareProvenance___le__(self, *args)
15411 
15412 
15413  def __lt__(self, *args):
15414  """
15415  __lt__(SoftwareProvenance self, SoftwareProvenance o) -> bool
15416  __lt__(SoftwareProvenance self, Particle d) -> bool
15417  """
15418  return _IMP_core.SoftwareProvenance___lt__(self, *args)
15419 
15420 
15421  def __ge__(self, *args):
15422  """
15423  __ge__(SoftwareProvenance self, SoftwareProvenance o) -> bool
15424  __ge__(SoftwareProvenance self, Particle d) -> bool
15425  """
15426  return _IMP_core.SoftwareProvenance___ge__(self, *args)
15427 
15428 
15429  def __gt__(self, *args):
15430  """
15431  __gt__(SoftwareProvenance self, SoftwareProvenance o) -> bool
15432  __gt__(SoftwareProvenance self, Particle d) -> bool
15433  """
15434  return _IMP_core.SoftwareProvenance___gt__(self, *args)
15435 
15436 
15437  def __hash__(self):
15438  """__hash__(SoftwareProvenance self) -> std::size_t"""
15439  return _IMP_core.SoftwareProvenance___hash__(self)
15440 
15441 
15442  def __str__(self):
15443  """__str__(SoftwareProvenance self) -> std::string"""
15444  return _IMP_core.SoftwareProvenance___str__(self)
15445 
15446 
15447  def __repr__(self):
15448  """__repr__(SoftwareProvenance self) -> std::string"""
15449  return _IMP_core.SoftwareProvenance___repr__(self)
15450 
15451  __swig_destroy__ = _IMP_core.delete_SoftwareProvenance
15452  __del__ = lambda self: None
15453 SoftwareProvenance_swigregister = _IMP_core.SoftwareProvenance_swigregister
15454 SoftwareProvenance_swigregister(SoftwareProvenance)
15455 
15456 def SoftwareProvenance_get_is_setup(*args):
15457  """
15458  get_is_setup(Model m, ParticleIndex pi) -> bool
15459  SoftwareProvenance_get_is_setup(_ParticleAdaptor p) -> bool
15460  """
15461  return _IMP_core.SoftwareProvenance_get_is_setup(*args)
15462 
15463 def SoftwareProvenance_setup_particle(*args):
15464  """
15465  setup_particle(Model m, ParticleIndex pi, std::string name, std::string version, std::string location) -> SoftwareProvenance
15466  setup_particle(_ParticleAdaptor decorator, std::string name, std::string version, std::string location) -> SoftwareProvenance
15467  setup_particle(Model m, ParticleIndex pi, SoftwareProvenance o) -> SoftwareProvenance
15468  SoftwareProvenance_setup_particle(_ParticleAdaptor decorator, SoftwareProvenance o) -> SoftwareProvenance
15469  """
15470  return _IMP_core.SoftwareProvenance_setup_particle(*args)
15471 
15472 class Provenanced(IMP.Decorator):
15473  """Proxy of C++ IMP::core::Provenanced class."""
15474 
15475  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
15476 
15477  def get_provenance(self):
15478  """get_provenance(Provenanced self) -> Provenance"""
15479  return _IMP_core.Provenanced_get_provenance(self)
15480 
15481 
15482  def set_provenance(self, p):
15483  """set_provenance(Provenanced self, Provenance p)"""
15484  return _IMP_core.Provenanced_set_provenance(self, p)
15485 
15486 
15487  def __init__(self, *args):
15488  """
15489  __init__(IMP::core::Provenanced self) -> Provenanced
15490  __init__(IMP::core::Provenanced self, Model m, ParticleIndex id) -> Provenanced
15491  __init__(IMP::core::Provenanced self, _ParticleAdaptor d) -> Provenanced
15492  """
15493  this = _IMP_core.new_Provenanced(*args)
15494  try:
15495  self.this.append(this)
15496  except __builtin__.Exception:
15497  self.this = this
15498 
15499  def get_is_setup(*args):
15500  """
15501  get_is_setup(Model m, ParticleIndex pi) -> bool
15502  get_is_setup(_ParticleAdaptor p) -> bool
15503  """
15504  return _IMP_core.Provenanced_get_is_setup(*args)
15505 
15506  get_is_setup = staticmethod(get_is_setup)
15507 
15508  def show(self, *args):
15509  """
15510  show(Provenanced self, _ostream out)
15511  show(Provenanced self)
15512  """
15513  return _IMP_core.Provenanced_show(self, *args)
15514 
15515 
15516  def setup_particle(*args):
15517  """
15518  setup_particle(Model m, ParticleIndex pi, Provenance p) -> Provenanced
15519  setup_particle(_ParticleAdaptor decorator, Provenance p) -> Provenanced
15520  """
15521  return _IMP_core.Provenanced_setup_particle(*args)
15522 
15523  setup_particle = staticmethod(setup_particle)
15524 
15525  def add_attribute(self, *args):
15526  """
15527  add_attribute(Provenanced self, FloatKey k, IMP::Float v, bool opt)
15528  add_attribute(Provenanced self, FloatKey a0, IMP::Float a1)
15529  add_attribute(Provenanced self, IntKey a0, IMP::Int a1)
15530  add_attribute(Provenanced self, StringKey a0, IMP::String a1)
15531  add_attribute(Provenanced self, ParticleIndexKey a0, Particle a1)
15532  add_attribute(Provenanced self, ObjectKey a0, Object a1)
15533  """
15534  return _IMP_core.Provenanced_add_attribute(self, *args)
15535 
15536 
15537  def get_value(self, *args):
15538  """
15539  get_value(Provenanced self, FloatKey a0) -> IMP::Float
15540  get_value(Provenanced self, IntKey a0) -> IMP::Int
15541  get_value(Provenanced self, StringKey a0) -> IMP::String
15542  get_value(Provenanced self, ParticleIndexKey a0) -> Particle
15543  get_value(Provenanced self, ObjectKey a0) -> Object
15544  """
15545  return _IMP_core.Provenanced_get_value(self, *args)
15546 
15547 
15548  def set_value(self, *args):
15549  """
15550  set_value(Provenanced self, FloatKey a0, IMP::Float a1)
15551  set_value(Provenanced self, IntKey a0, IMP::Int a1)
15552  set_value(Provenanced self, StringKey a0, IMP::String a1)
15553  set_value(Provenanced self, ParticleIndexKey a0, Particle a1)
15554  set_value(Provenanced self, ObjectKey a0, Object a1)
15555  """
15556  return _IMP_core.Provenanced_set_value(self, *args)
15557 
15558 
15559  def remove_attribute(self, *args):
15560  """
15561  remove_attribute(Provenanced self, FloatKey a0)
15562  remove_attribute(Provenanced self, IntKey a0)
15563  remove_attribute(Provenanced self, StringKey a0)
15564  remove_attribute(Provenanced self, ParticleIndexKey a0)
15565  remove_attribute(Provenanced self, ObjectKey a0)
15566  """
15567  return _IMP_core.Provenanced_remove_attribute(self, *args)
15568 
15569 
15570  def has_attribute(self, *args):
15571  """
15572  has_attribute(Provenanced self, FloatKey a0) -> bool
15573  has_attribute(Provenanced self, IntKey a0) -> bool
15574  has_attribute(Provenanced self, StringKey a0) -> bool
15575  has_attribute(Provenanced self, ParticleIndexKey a0) -> bool
15576  has_attribute(Provenanced self, ObjectKey a0) -> bool
15577  """
15578  return _IMP_core.Provenanced_has_attribute(self, *args)
15579 
15580 
15581  def get_derivative(self, a0):
15582  """get_derivative(Provenanced self, FloatKey a0) -> double"""
15583  return _IMP_core.Provenanced_get_derivative(self, a0)
15584 
15585 
15586  def get_name(self):
15587  """get_name(Provenanced self) -> std::string"""
15588  return _IMP_core.Provenanced_get_name(self)
15589 
15590 
15591  def clear_caches(self):
15592  """clear_caches(Provenanced self)"""
15593  return _IMP_core.Provenanced_clear_caches(self)
15594 
15595 
15596  def set_name(self, a0):
15597  """set_name(Provenanced self, std::string a0)"""
15598  return _IMP_core.Provenanced_set_name(self, a0)
15599 
15600 
15601  def set_check_level(self, a0):
15602  """set_check_level(Provenanced self, IMP::CheckLevel a0)"""
15603  return _IMP_core.Provenanced_set_check_level(self, a0)
15604 
15605 
15606  def add_to_derivative(self, a0, a1, a2):
15607  """add_to_derivative(Provenanced self, FloatKey a0, double a1, DerivativeAccumulator a2)"""
15608  return _IMP_core.Provenanced_add_to_derivative(self, a0, a1, a2)
15609 
15610 
15611  def set_is_optimized(self, a0, a1):
15612  """set_is_optimized(Provenanced self, FloatKey a0, bool a1)"""
15613  return _IMP_core.Provenanced_set_is_optimized(self, a0, a1)
15614 
15615 
15616  def get_is_optimized(self, a0):
15617  """get_is_optimized(Provenanced self, FloatKey a0) -> bool"""
15618  return _IMP_core.Provenanced_get_is_optimized(self, a0)
15619 
15620 
15621  def get_check_level(self):
15622  """get_check_level(Provenanced self) -> IMP::CheckLevel"""
15623  return _IMP_core.Provenanced_get_check_level(self)
15624 
15625 
15626  def __eq__(self, *args):
15627  """
15628  __eq__(Provenanced self, Provenanced o) -> bool
15629  __eq__(Provenanced self, Particle d) -> bool
15630  """
15631  return _IMP_core.Provenanced___eq__(self, *args)
15632 
15633 
15634  def __ne__(self, *args):
15635  """
15636  __ne__(Provenanced self, Provenanced o) -> bool
15637  __ne__(Provenanced self, Particle d) -> bool
15638  """
15639  return _IMP_core.Provenanced___ne__(self, *args)
15640 
15641 
15642  def __le__(self, *args):
15643  """
15644  __le__(Provenanced self, Provenanced o) -> bool
15645  __le__(Provenanced self, Particle d) -> bool
15646  """
15647  return _IMP_core.Provenanced___le__(self, *args)
15648 
15649 
15650  def __lt__(self, *args):
15651  """
15652  __lt__(Provenanced self, Provenanced o) -> bool
15653  __lt__(Provenanced self, Particle d) -> bool
15654  """
15655  return _IMP_core.Provenanced___lt__(self, *args)
15656 
15657 
15658  def __ge__(self, *args):
15659  """
15660  __ge__(Provenanced self, Provenanced o) -> bool
15661  __ge__(Provenanced self, Particle d) -> bool
15662  """
15663  return _IMP_core.Provenanced___ge__(self, *args)
15664 
15665 
15666  def __gt__(self, *args):
15667  """
15668  __gt__(Provenanced self, Provenanced o) -> bool
15669  __gt__(Provenanced self, Particle d) -> bool
15670  """
15671  return _IMP_core.Provenanced___gt__(self, *args)
15672 
15673 
15674  def __hash__(self):
15675  """__hash__(Provenanced self) -> std::size_t"""
15676  return _IMP_core.Provenanced___hash__(self)
15677 
15678 
15679  def __str__(self):
15680  """__str__(Provenanced self) -> std::string"""
15681  return _IMP_core.Provenanced___str__(self)
15682 
15683 
15684  def __repr__(self):
15685  """__repr__(Provenanced self) -> std::string"""
15686  return _IMP_core.Provenanced___repr__(self)
15687 
15688  __swig_destroy__ = _IMP_core.delete_Provenanced
15689  __del__ = lambda self: None
15690 Provenanced_swigregister = _IMP_core.Provenanced_swigregister
15691 Provenanced_swigregister(Provenanced)
15692 
15693 def Provenanced_get_is_setup(*args):
15694  """
15695  get_is_setup(Model m, ParticleIndex pi) -> bool
15696  Provenanced_get_is_setup(_ParticleAdaptor p) -> bool
15697  """
15698  return _IMP_core.Provenanced_get_is_setup(*args)
15699 
15700 def Provenanced_setup_particle(*args):
15701  """
15702  setup_particle(Model m, ParticleIndex pi, Provenance p) -> Provenanced
15703  Provenanced_setup_particle(_ParticleAdaptor decorator, Provenance p) -> Provenanced
15704  """
15705  return _IMP_core.Provenanced_setup_particle(*args)
15706 
15707 
15708 def add_provenance(m, pi, p):
15709  """add_provenance(Model m, ParticleIndex pi, Provenance p)"""
15710  return _IMP_core.add_provenance(m, pi, p)
15711 
15712 def create_clone(p):
15713  """create_clone(Provenance p) -> Provenance"""
15714  return _IMP_core.create_clone(p)
15715 
15717  """
15718  get_transformation_aligning_first_to_second(IMP::ParticlesTemp const & a, IMP::ParticlesTemp const & b) -> Transformation3D
15719  get_transformation_aligning_first_to_second(IMP::ParticlesTemp const & a, IMP::Vector< IMP::algebra::VectorD< 3 > > const & b) -> Transformation3D
15720  get_transformation_aligning_first_to_second(IMP::Vector< IMP::algebra::VectorD< 3 > > const & a, IMP::ParticlesTemp const & b) -> Transformation3D
15721  """
15722  return _IMP_core.get_transformation_aligning_first_to_second(*args)
15723 
15724 def create_restraint(ps, pp):
15725  """create_restraint(PairScore ps, IMP::ParticlePair pp) -> Restraint"""
15726  return _IMP_core.create_restraint(ps, pp)
15728  """Proxy of C++ IMP::core::TruncatedHarmonic<(IMP::core::LOWER)> class."""
15729 
15730  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
15731 
15732  def __init__(self, *args):
15733  """
15734  __init__(IMP::core::TruncatedHarmonic<(IMP::core::LOWER)> self, IMP::Float center, IMP::Float k, IMP::Float threshold, IMP::Float limit) -> TruncatedHarmonicLowerBound
15735  __init__(IMP::core::TruncatedHarmonic<(IMP::core::LOWER)> self, IMP::Float center, IMP::Float k, IMP::Float threshold) -> TruncatedHarmonicLowerBound
15736  """
15737  this = _IMP_core.new_TruncatedHarmonicLowerBound(*args)
15738  try:
15739  self.this.append(this)
15740  except __builtin__.Exception:
15741  self.this = this
15742 
15743  def get_version_info(self):
15744  """get_version_info(TruncatedHarmonicLowerBound self) -> VersionInfo"""
15745  return _IMP_core.TruncatedHarmonicLowerBound_get_version_info(self)
15746 
15747 
15748  def __str__(self):
15749  """__str__(TruncatedHarmonicLowerBound self) -> std::string"""
15750  return _IMP_core.TruncatedHarmonicLowerBound___str__(self)
15751 
15752 
15753  def __repr__(self):
15754  """__repr__(TruncatedHarmonicLowerBound self) -> std::string"""
15755  return _IMP_core.TruncatedHarmonicLowerBound___repr__(self)
15756 
15757 
15758  @staticmethod
15759  def get_from(o):
15760  return _object_cast_to_TruncatedHarmonic(o)
15761 
15762 TruncatedHarmonicLowerBound_swigregister = _IMP_core.TruncatedHarmonicLowerBound_swigregister
15763 TruncatedHarmonicLowerBound_swigregister(TruncatedHarmonicLowerBound)
15764 
15766  """Proxy of C++ IMP::core::TruncatedHarmonic<(IMP::core::UPPER)> class."""
15767 
15768  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
15769 
15770  def __init__(self, *args):
15771  """
15772  __init__(IMP::core::TruncatedHarmonic<(IMP::core::UPPER)> self, IMP::Float center, IMP::Float k, IMP::Float threshold, IMP::Float limit) -> TruncatedHarmonicUpperBound
15773  __init__(IMP::core::TruncatedHarmonic<(IMP::core::UPPER)> self, IMP::Float center, IMP::Float k, IMP::Float threshold) -> TruncatedHarmonicUpperBound
15774  """
15775  this = _IMP_core.new_TruncatedHarmonicUpperBound(*args)
15776  try:
15777  self.this.append(this)
15778  except __builtin__.Exception:
15779  self.this = this
15780 
15781  def get_version_info(self):
15782  """get_version_info(TruncatedHarmonicUpperBound self) -> VersionInfo"""
15783  return _IMP_core.TruncatedHarmonicUpperBound_get_version_info(self)
15784 
15785 
15786  def __str__(self):
15787  """__str__(TruncatedHarmonicUpperBound self) -> std::string"""
15788  return _IMP_core.TruncatedHarmonicUpperBound___str__(self)
15789 
15790 
15791  def __repr__(self):
15792  """__repr__(TruncatedHarmonicUpperBound self) -> std::string"""
15793  return _IMP_core.TruncatedHarmonicUpperBound___repr__(self)
15794 
15795 
15796  @staticmethod
15797  def get_from(o):
15798  return _object_cast_to_TruncatedHarmonic(o)
15799 
15800 TruncatedHarmonicUpperBound_swigregister = _IMP_core.TruncatedHarmonicUpperBound_swigregister
15801 TruncatedHarmonicUpperBound_swigregister(TruncatedHarmonicUpperBound)
15802 
15804  """Proxy of C++ IMP::core::TruncatedHarmonic<(IMP::core::BOTH)> class."""
15805 
15806  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
15807 
15808  def __init__(self, *args):
15809  """
15810  __init__(IMP::core::TruncatedHarmonic<(IMP::core::BOTH)> self, IMP::Float center, IMP::Float k, IMP::Float threshold, IMP::Float limit) -> TruncatedHarmonicBound
15811  __init__(IMP::core::TruncatedHarmonic<(IMP::core::BOTH)> self, IMP::Float center, IMP::Float k, IMP::Float threshold) -> TruncatedHarmonicBound
15812  """
15813  this = _IMP_core.new_TruncatedHarmonicBound(*args)
15814  try:
15815  self.this.append(this)
15816  except __builtin__.Exception:
15817  self.this = this
15818 
15819  def get_version_info(self):
15820  """get_version_info(TruncatedHarmonicBound self) -> VersionInfo"""
15821  return _IMP_core.TruncatedHarmonicBound_get_version_info(self)
15822 
15823 
15824  def __str__(self):
15825  """__str__(TruncatedHarmonicBound self) -> std::string"""
15826  return _IMP_core.TruncatedHarmonicBound___str__(self)
15827 
15828 
15829  def __repr__(self):
15830  """__repr__(TruncatedHarmonicBound self) -> std::string"""
15831  return _IMP_core.TruncatedHarmonicBound___repr__(self)
15832 
15833 
15834  @staticmethod
15835  def get_from(o):
15836  return _object_cast_to_TruncatedHarmonic(o)
15837 
15838 TruncatedHarmonicBound_swigregister = _IMP_core.TruncatedHarmonicBound_swigregister
15839 TruncatedHarmonicBound_swigregister(TruncatedHarmonicBound)
15840 
15841 class ParticleType(IMP._Value):
15842  """Proxy of C++ IMP::Key<(34897493)> class."""
15843 
15844  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
15845 
15846  def __init__(self, *args):
15847  """
15848  __init__(IMP::Key<(34897493)> self) -> ParticleType
15849  __init__(IMP::Key<(34897493)> self, std::string const & c, bool is_implicit_add_permitted=True) -> ParticleType
15850  __init__(IMP::Key<(34897493)> self, std::string const & c) -> ParticleType
15851  __init__(IMP::Key<(34897493)> self, unsigned int i) -> ParticleType
15852  """
15853  this = _IMP_core.new_ParticleType(*args)
15854  try:
15855  self.this.append(this)
15856  except __builtin__.Exception:
15857  self.this = this
15858 
15859  def add_key(sc):
15860  """add_key(std::string sc) -> unsigned int"""
15861  return _IMP_core.ParticleType_add_key(sc)
15862 
15863  add_key = staticmethod(add_key)
15864 
15865  def get_key_exists(sc):
15866  """get_key_exists(std::string sc) -> bool"""
15867  return _IMP_core.ParticleType_get_key_exists(sc)
15868 
15869  get_key_exists = staticmethod(get_key_exists)
15870 
15871  def get_string(self):
15872  """get_string(ParticleType self) -> std::string const"""
15873  return _IMP_core.ParticleType_get_string(self)
15874 
15875 
15876  def __cmp__(self, o):
15877  """__cmp__(ParticleType self, ParticleType o) -> int"""
15878  return _IMP_core.ParticleType___cmp__(self, o)
15879 
15880 
15881  def __eq__(self, o):
15882  """__eq__(ParticleType self, ParticleType o) -> bool"""
15883  return _IMP_core.ParticleType___eq__(self, o)
15884 
15885 
15886  def __ne__(self, o):
15887  """__ne__(ParticleType self, ParticleType o) -> bool"""
15888  return _IMP_core.ParticleType___ne__(self, o)
15889 
15890 
15891  def __lt__(self, o):
15892  """__lt__(ParticleType self, ParticleType o) -> bool"""
15893  return _IMP_core.ParticleType___lt__(self, o)
15894 
15895 
15896  def __gt__(self, o):
15897  """__gt__(ParticleType self, ParticleType o) -> bool"""
15898  return _IMP_core.ParticleType___gt__(self, o)
15899 
15900 
15901  def __ge__(self, o):
15902  """__ge__(ParticleType self, ParticleType o) -> bool"""
15903  return _IMP_core.ParticleType___ge__(self, o)
15904 
15905 
15906  def __le__(self, o):
15907  """__le__(ParticleType self, ParticleType o) -> bool"""
15908  return _IMP_core.ParticleType___le__(self, o)
15909 
15910 
15911  def __hash__(self):
15912  """__hash__(ParticleType self) -> std::size_t"""
15913  return _IMP_core.ParticleType___hash__(self)
15914 
15915 
15916  def show(self, *args):
15917  """
15918  show(ParticleType self, _ostream out)
15919  show(ParticleType self)
15920  """
15921  return _IMP_core.ParticleType_show(self, *args)
15922 
15923 
15924  def add_alias(old_key, new_name):
15925  """add_alias(ParticleType old_key, std::string new_name) -> ParticleType"""
15926  return _IMP_core.ParticleType_add_alias(old_key, new_name)
15927 
15928  add_alias = staticmethod(add_alias)
15929 
15930  def get_number_of_keys():
15931  """get_number_of_keys() -> unsigned int"""
15932  return _IMP_core.ParticleType_get_number_of_keys()
15933 
15934  get_number_of_keys = staticmethod(get_number_of_keys)
15935 
15936  def get_index(self):
15937  """get_index(ParticleType self) -> unsigned int"""
15938  return _IMP_core.ParticleType_get_index(self)
15939 
15940 
15941  def show_all(out):
15942  """show_all(_ostream out)"""
15943  return _IMP_core.ParticleType_show_all(out)
15944 
15945  show_all = staticmethod(show_all)
15946 
15947  def get_all_strings():
15948  """get_all_strings() -> IMP::Vector< std::string >"""
15949  return _IMP_core.ParticleType_get_all_strings()
15950 
15951  get_all_strings = staticmethod(get_all_strings)
15952 
15953  def get_number_unique():
15954  """get_number_unique() -> unsigned int"""
15955  return _IMP_core.ParticleType_get_number_unique()
15956 
15957  get_number_unique = staticmethod(get_number_unique)
15958 
15959  def __str__(self):
15960  """__str__(ParticleType self) -> std::string"""
15961  return _IMP_core.ParticleType___str__(self)
15962 
15963 
15964  def __repr__(self):
15965  """__repr__(ParticleType self) -> std::string"""
15966  return _IMP_core.ParticleType___repr__(self)
15967 
15968  __swig_destroy__ = _IMP_core.delete_ParticleType
15969  __del__ = lambda self: None
15970 ParticleType_swigregister = _IMP_core.ParticleType_swigregister
15971 ParticleType_swigregister(ParticleType)
15972 
15973 def ParticleType_add_key(sc):
15974  """ParticleType_add_key(std::string sc) -> unsigned int"""
15975  return _IMP_core.ParticleType_add_key(sc)
15976 
15977 def ParticleType_get_key_exists(sc):
15978  """ParticleType_get_key_exists(std::string sc) -> bool"""
15979  return _IMP_core.ParticleType_get_key_exists(sc)
15980 
15981 def ParticleType_add_alias(old_key, new_name):
15982  """ParticleType_add_alias(ParticleType old_key, std::string new_name) -> ParticleType"""
15983  return _IMP_core.ParticleType_add_alias(old_key, new_name)
15984 
15985 def ParticleType_get_number_of_keys():
15986  """ParticleType_get_number_of_keys() -> unsigned int"""
15987  return _IMP_core.ParticleType_get_number_of_keys()
15988 
15989 def ParticleType_show_all(out):
15990  """ParticleType_show_all(_ostream out)"""
15991  return _IMP_core.ParticleType_show_all(out)
15992 
15993 def ParticleType_get_all_strings():
15994  """ParticleType_get_all_strings() -> IMP::Vector< std::string >"""
15995  return _IMP_core.ParticleType_get_all_strings()
15996 
15997 def ParticleType_get_number_unique():
15998  """ParticleType_get_number_unique() -> unsigned int"""
15999  return _IMP_core.ParticleType_get_number_unique()
16000 
16002  """Proxy of C++ IMP::core::GenericAttributeSingletonScore<(UnaryFunction)> class."""
16003 
16004  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
16005  __repr__ = _swig_repr
16006 
16007  def __init__(self, f, k):
16008  """__init__(IMP::core::GenericAttributeSingletonScore<(UnaryFunction)> self, UnaryFunction f, FloatKey k) -> AttributeSingletonScore"""
16009  this = _IMP_core.new_AttributeSingletonScore(f, k)
16010  try:
16011  self.this.append(this)
16012  except __builtin__.Exception:
16013  self.this = this
16014 
16015  def do_get_inputs(self, m, pis):
16016  """do_get_inputs(AttributeSingletonScore self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
16017  return _IMP_core.AttributeSingletonScore_do_get_inputs(self, m, pis)
16018 
16019 
16020  def get_unary_function(self):
16021  """get_unary_function(AttributeSingletonScore self) -> UnaryFunction"""
16022  return _IMP_core.AttributeSingletonScore_get_unary_function(self)
16023 
16024 
16025  def get_version_info(self):
16026  """get_version_info(AttributeSingletonScore self) -> VersionInfo"""
16027  return _IMP_core.AttributeSingletonScore_get_version_info(self)
16028 
16029 AttributeSingletonScore_swigregister = _IMP_core.AttributeSingletonScore_swigregister
16030 AttributeSingletonScore_swigregister(AttributeSingletonScore)
16031 
16032 
16034  """create_generic_attribute_singleton_score(UnaryFunction uf, FloatKey k) -> AttributeSingletonScore"""
16035  return _IMP_core.create_generic_attribute_singleton_score(uf, k)
16036 class BoundingBox3DSingletonScore(IMP.SingletonScore):
16037  """Proxy of C++ IMP::core::GenericBoundingBox3DSingletonScore<(UnaryFunction)> class."""
16038 
16039  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
16040  __repr__ = _swig_repr
16041 
16042  def __init__(self, f, bb):
16043  """__init__(IMP::core::GenericBoundingBox3DSingletonScore<(UnaryFunction)> self, UnaryFunction f, BoundingBox3D bb) -> BoundingBox3DSingletonScore"""
16044  this = _IMP_core.new_BoundingBox3DSingletonScore(f, bb)
16045  try:
16046  self.this.append(this)
16047  except __builtin__.Exception:
16048  self.this = this
16049 
16050  def do_get_inputs(self, m, pis):
16051  """do_get_inputs(BoundingBox3DSingletonScore self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
16052  return _IMP_core.BoundingBox3DSingletonScore_do_get_inputs(self, m, pis)
16053 
16054 
16055  def get_version_info(self):
16056  """get_version_info(BoundingBox3DSingletonScore self) -> VersionInfo"""
16057  return _IMP_core.BoundingBox3DSingletonScore_get_version_info(self)
16058 
16059 BoundingBox3DSingletonScore_swigregister = _IMP_core.BoundingBox3DSingletonScore_swigregister
16060 BoundingBox3DSingletonScore_swigregister(BoundingBox3DSingletonScore)
16061 
16062 
16063 def create_bounding_box_3d_singleton_score(f, bb):
16064  """create_bounding_box_3d_singleton_score(UnaryFunction f, BoundingBox3D bb) -> BoundingBox3DSingletonScore"""
16065  return _IMP_core.create_bounding_box_3d_singleton_score(f, bb)
16066 class BoundingSphere3DSingletonScore(IMP.SingletonScore):
16067  """Proxy of C++ IMP::core::GenericBoundingSphere3DSingletonScore<(UnaryFunction)> class."""
16068 
16069  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
16070  __repr__ = _swig_repr
16071 
16072  def __init__(self, f, sphere):
16073  """__init__(IMP::core::GenericBoundingSphere3DSingletonScore<(UnaryFunction)> self, UnaryFunction f, Sphere3D sphere) -> BoundingSphere3DSingletonScore"""
16074  this = _IMP_core.new_BoundingSphere3DSingletonScore(f, sphere)
16075  try:
16076  self.this.append(this)
16077  except __builtin__.Exception:
16078  self.this = this
16079 
16080  def do_get_inputs(self, m, pis):
16081  """do_get_inputs(BoundingSphere3DSingletonScore self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
16082  return _IMP_core.BoundingSphere3DSingletonScore_do_get_inputs(self, m, pis)
16083 
16084 
16085  def get_version_info(self):
16086  """get_version_info(BoundingSphere3DSingletonScore self) -> VersionInfo"""
16087  return _IMP_core.BoundingSphere3DSingletonScore_get_version_info(self)
16088 
16089 BoundingSphere3DSingletonScore_swigregister = _IMP_core.BoundingSphere3DSingletonScore_swigregister
16090 BoundingSphere3DSingletonScore_swigregister(BoundingSphere3DSingletonScore)
16091 
16092 
16093 def create_bounding_sphere_3d_singleton_score(f, sphere):
16094  """create_bounding_sphere_3d_singleton_score(UnaryFunction f, Sphere3D sphere) -> BoundingSphere3DSingletonScore"""
16095  return _IMP_core.create_bounding_sphere_3d_singleton_score(f, sphere)
16097  """Proxy of C++ IMP::core::GenericDistanceToSingletonScore<(UnaryFunction)> class."""
16098 
16099  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
16100  __repr__ = _swig_repr
16101 
16102  def __init__(self, f, pt):
16103  """__init__(IMP::core::GenericDistanceToSingletonScore<(UnaryFunction)> self, UnaryFunction f, Vector3D pt) -> DistanceToSingletonScore"""
16104  this = _IMP_core.new_DistanceToSingletonScore(f, pt)
16105  try:
16106  self.this.append(this)
16107  except __builtin__.Exception:
16108  self.this = this
16109 
16110  def do_get_inputs(self, m, pis):
16111  """do_get_inputs(DistanceToSingletonScore self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
16112  return _IMP_core.DistanceToSingletonScore_do_get_inputs(self, m, pis)
16113 
16114 
16115  def get_version_info(self):
16116  """get_version_info(DistanceToSingletonScore self) -> VersionInfo"""
16117  return _IMP_core.DistanceToSingletonScore_get_version_info(self)
16118 
16119 DistanceToSingletonScore_swigregister = _IMP_core.DistanceToSingletonScore_swigregister
16120 DistanceToSingletonScore_swigregister(DistanceToSingletonScore)
16121 
16122 
16123 def create_distance_to_singleton_score(f, pt):
16124  """create_distance_to_singleton_score(UnaryFunction f, Vector3D pt) -> DistanceToSingletonScore"""
16125  return _IMP_core.create_distance_to_singleton_score(f, pt)
16126 
16127 
16128 def get_all_provenance(p, types=[StructureProvenance, SampleProvenance,
16129  CombineProvenance, FilterProvenance,
16130  ClusterProvenance, ScriptProvenance,
16131  SoftwareProvenance]):
16132  """Yield all provenance decorators of the given types for the particle.
16133  By default, all provenance types are returned. Provenance is returned
16134  in order, most recent first. If the particle has no provenance
16135  information, an empty generator is returned."""
16136  if Provenanced.get_is_setup(p):
16137  prov = Provenanced(p).get_provenance()
16138  while prov:
16139  for c in types:
16140  if c.get_is_setup(prov):
16141  yield c(prov)
16142  prov = prov.get_previous()
16143 
16145  """Tag the given particle with the current Python script.
16146  This is a noop if the particle is already so tagged."""
16147  main = sys.modules['__main__']
16148 # Can't do anything if running from an interactive interpreter
16149  if not hasattr(main, '__file__'):
16150  return
16151  f = IMP.get_absolute_path(main.__file__)
16152  for prov in get_all_provenance(p, types=[ScriptProvenance]):
16153  if prov.get_filename() == f:
16154  return
16155  m = p.get_model()
16156  provp = IMP.Particle(m)
16157  provp.set_name('script')
16158  prov = ScriptProvenance.setup_particle(provp, f)
16159  add_provenance(m, p, prov)
16160 
16161 def add_software_provenance(p, name, version, location):
16162  """Tag the given particle with the software used to create it.
16163  This is a noop if the particle is already so tagged."""
16164  for prov in get_all_provenance(p, types=[SoftwareProvenance]):
16165  if prov.get_software_name() == name and prov.get_version() == version \
16166  and prov.get_location() == location:
16167  return
16168  m = p.get_model()
16169  provp = IMP.Particle(m)
16170  provp.set_name('software')
16171  prov = SoftwareProvenance.setup_particle(provp, name, version, location)
16172  add_provenance(m, p, prov)
16173 
16175  """Tag the given particle as being created by the current version of IMP."""
16176  add_software_provenance(p, name="Integrative Modeling Platform (IMP)",
16177  version=IMP.get_module_version(),
16178  location="https://integrativemodeling.org")
16179 
16180 
16181 def get_module_version():
16182  """get_module_version() -> std::string const"""
16183  return _IMP_core.get_module_version()
16184 
16185 def get_example_path(fname):
16186  """get_example_path(std::string fname) -> std::string"""
16187  return _IMP_core.get_example_path(fname)
16188 
16189 def get_data_path(fname):
16190  """get_data_path(std::string fname) -> std::string"""
16191  return _IMP_core.get_data_path(fname)
16192 
16193 from . import _version_check
16194 _version_check.check_version(get_module_version())
16195 __version__ = get_module_version()
16196 
16197 
16198 
F visit_breadth_first(HD d, F f)
Apply the visitor to each particle, breadth first.
A base class for geometry contained in particles.
A base class for modifiers of ParticlesTemp.
GenericDistanceToSingletonScore< UnaryFunction > DistanceToSingletonScore
double get_kt(double T)
Return kT for a given temperature in units of [kcal/mol].
Abstract class for scoring object(s) of type ParticleIndexPair.
Definition: PairScore.h:37
double get_height(const Surface &s, const XYZR &d)
Get height of sphere above surface.
Definition: Surface.h:129
algebra::Transformation3D get_transformation_aligning_first_to_second(XYZsOrVector3ds a, XYZsOrVector3ds b)
double get_mean(const cv::Mat &mat, const cvIntMat &mask)
CheckLevel get_check_level()
Get the current audit mode.
Definition: exception.h:81
def add_script_provenance
Tag the given particle with the current Python script.
Abstract predicate function.
Definition: QuadPredicate.h:31
Restraint * create_restraint(Score *s, const typename Score::Argument &t, std::string name=std::string())
Definition: generic.h:36
ParticleIndex get_root_rigid_body(RigidMember m)
Return the index of the outer-most rigid body containing the member.
algebra::ReferenceFrame3D get_initial_reference_frame(Model *m, const ParticleIndexes &pis)
The base class for geometry.
F visit_depth_first(HD d, F &f)
Apply functor F to each particle, traversing the hierarchy depth first.
XYZRs create_xyzr_particles(Model *m, unsigned int num, Float radius, Float box_side=10)
Create a set of particles with random coordinates.
A base class for geometry contained in particles.
const algebra::Vector3D get_vector_geometry(XYZ d)
Definition: XYZ.h:135
double get_angle(Direction a, Direction b)
Get angle between directions.
A base class for geometry from a set of particles.
double get_dihedral(XYZ a, XYZ b, XYZ c, XYZ d)
Compute the dihedral angle (in radians) between the four particles.
Make CGAL functionality available to IMP.
Provenance create_clone(Provenance p)
Clone provenance (including previous provenance)
ParticlesTemp create_rigid_bodies(Model *m, unsigned int n, bool no_members=false)
std::string get_data_path(std::string file_name)
Return the full path to one of this module's data files.
void add_rigid_body_cache_key(ObjectKey k)
Base class for all samplers.
Definition: Sampler.h:31
Key< 34897493 > ParticleType
An IMP::Key object for identifying types of particles by strings.
Definition: Typed.h:28
algebra::Vector3D get_centroid(const XYZs &ps)
Get the centroid.
void add_particle(RMF::FileHandle fh, Particle *hs)
GenericHierarchies get_leaves(Hierarchy mhd)
Get all the leaves of the bit of hierarchy.
Composable functors to implement scores via compile-time composition.
std::string get_example_path(std::string file_name)
Return the full path to one of this module's example files.
GenericHierarchies get_all_descendants(Hierarchy mhd)
Get all the particles in the subtree.
A base class for geometry from a set of particles.
def add_imp_provenance
Tag the given particle as being created by the current version of IMP.
display::Geometries create_blame_geometries(const RestraintsTemp &rs, const ParticlesTemp &ps, double max=NO_MAX, std::string name=std::string())
void show_rigid_body_hierarchy(RigidBody rb, TextOutput out=TextOutput(std::cout))
Implement a constraint on the Model.
Definition: Constraint.h:49
void add_restraint(RMF::FileHandle fh, Restraint *hs)
def add_software_provenance
Tag the given particle with the software used to create it.
Abstract predicate function.
Ints get_index(const ParticlesTemp &particles, const Subset &subset, const Subsets &excluded)
Common base class for heavy weight IMP objects.
Definition: Object.h:106
int get_number_of_frames(const ::npctransport_proto::Assignment &config, double time_step)
Abstract class for scoring object(s) of type ParticleIndex.
ScoreStates maintain invariants in the Model.
Definition: ScoreState.h:53
Base class for all optimizers.
Definition: Optimizer.h:46
GenericAttributeSingletonScore< UnaryFunction > AttributeSingletonScore
SurfaceGeometry * create_geometry(const Surface s, std::string name=std::string("SurfaceGeometry%1%"))
Create a geometry from a Surface.
Definition: Surface.h:191
void add_restraints(RMF::FileHandle fh, const Restraints &hs)
algebra::BoundingBoxD< 3 > get_bounding_box(const XYZRs &ps)
Get the bounding box.
Version and module information for Objects.
Definition: VersionInfo.h:28
GenericHierarchies get_internal(Hierarchy mhd)
Get all the non-leaves of the bit of hierarchy.
Interface to specialized Particle types (e.g. atoms)
Definition: Decorator.h:118
std::ostream & show(Hierarchy h, std::ostream &out=std::cout)
Print the hierarchy using a given decorator to display each node.
std::string get_absolute_path(std::string file)
Convert a possibly relative path to an absolute path.
algebra::Sphere3D get_enclosing_sphere(const XYZs &v)
Get a sphere enclosing the set of XYZRs.
Base class for optimizers that act on individual attributes.
SurfaceGeometry * get_constrained_surface_geometry(const Surface s, std::string name="SurfaceGeometry%1%")
Get surface geometry constrained to the surface.
Definition: Surface.h:236
Abstract predicate function.
Definition: PairPredicate.h:31
General purpose algebraic and geometric methods that are expected to be used by a wide variety of IMP...
Represents a scoring function on the model.
void set_vector_geometry(XYZ d, const algebra::Vector3D &v)
Definition: XYZ.h:131
Shared optimizer state that is invoked upon commitment of new coordinates.
Hierarchy get_root(Hierarchy h)
Return the root of the hierarchy.
Abstract predicate function.
Abstract class to implement hierarchical methods.
Definition: Refiner.h:34
double get_depth(const Surface &s, const XYZR &d)
Get depth of sphere below surface.
Definition: Surface.h:143
void set_enclosing_radius(XYZR b, const XYZs &v)
Set the radius of the first to enclose the list.
Class to handle individual particles of a Model object.
Definition: Particle.h:41
GenericAttributeSingletonScore< UF > * create_generic_attribute_singleton_score(UF *uf, FloatKey k)
void transform(RigidBody a, const algebra::Transformation3D &tr)
Transform a rigid body.
Definition: rigid_bodies.h:864
void assign_blame(const RestraintsTemp &rs, const ParticlesTemp &ps, FloatKey attribute)
TruncatedHarmonic< BOTH > TruncatedHarmonicBound
TruncatedHarmonic< UPPER > TruncatedHarmonicUpperBound
BallMover
Definition: BallMover.py:1
Output IMP model data in various file formats.
std::string get_chain_id(Hierarchy h)
Walk up the hierarchy to determine the chain id.
def get_all_provenance
Yield all provenance decorators of the given types for the particle.
Abstract class for scoring object(s) of type ParticleIndexTriplet.
Definition: TripletScore.h:37
void add_provenance(Model *m, ParticleIndex pi, Provenance p)
Add provenance to part of the model.
Tag part of the system to track how it was created.
Definition: provenance.h:586
double get_distance(const Surface &s, const XYZR &d)
Get distance from sphere to surface.
Definition: Surface.h:153
ParticleIndexes get_indexes(const ParticlesTemp &ps)
Abstract single variable functor class for score functions.
Definition: UnaryFunction.h:25
void set_enclosing_sphere(XYZR b, const XYZs &v, double slack=0)
Set the coordinates and radius of the first to enclose the list.
TruncatedHarmonic< LOWER > TruncatedHarmonicLowerBound
void set_check_level(CheckLevel tf)
Control runtime checks in the code.
Definition: exception.h:73
std::string get_module_version()
A restraint is a term in an IMP ScoringFunction.
Definition: Restraint.h:54