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IMP Reference Guide  2.12.0
The Integrative Modeling Platform
IMP::npctransport::Transporting Class Reference

A decorator for a particle transporting through a barrier. More...

#include <IMP/npctransport/Transporting.h>

+ Inheritance diagram for IMP::npctransport::Transporting:

Detailed Description

A decorator for a particle transporting through a barrier.

Definition at line 23 of file Transporting.h.

Public Member Functions

 Transporting (::IMP::Model *m,::IMP::ParticleIndex id)
 
 Transporting (const IMP::ParticleAdaptor &d)
 
bool get_is_last_entry_from_top () const
 returns whether the particle last enetered the transport moiety from its More...
 
double get_last_tracked_z () const
 
int get_n_entries_bottom () const
 
int get_n_entries_top () const
 
void set_is_last_entry_from_top (bool is_last_entry_from_top)
 sets whether the particle last enetered the transport moiety from its top More...
 
void set_last_tracked_z (double last_tracked_z)
 
void set_n_entries_bottom (int n)
 
void set_n_entries_top (int n)
 
void show (std::ostream &out=std::cout) const
 
- Public Member Functions inherited from IMP::Decorator
bool get_is_valid () const
 Returns true if constructed with a non-default constructor. More...
 
Modelget_model () const
 Returns the Model containing the particle. More...
 
Particleget_particle () const
 Returns the particle decorated by this decorator. More...
 
ParticleIndex get_particle_index () const
 Returns the particle index decorated by this decorator. More...
 
 operator Particle * () const
 
 operator ParticleIndex () const
 
Particleoperator-> () const
 

Static Public Member Functions

static IntKey get_is_last_entry_from_top_key ()
 Get the decorator key for is_last_entry_from_top. More...
 
static bool get_is_setup (const IMP::ParticleAdaptor &p)
 
static bool get_is_setup (Model *m, ParticleIndex pi)
 Return true if the particle is an instance of an Transporting. More...
 
static FloatKey get_last_tracked_z_key ()
 Get the decorator key last_tracked_z value. More...
 
static IntKey get_n_entries_bottom_key ()
 Get the decorator key n_entries_bottom value. More...
 
static IntKey get_n_entries_top_key ()
 Get the decorator key n_entries_top value. More...
 
static Transporting setup_particle (IMP::ParticleAdaptor decorator, bool is_last_entry_from_top=false)
 
static Transporting setup_particle (Model *m, ParticleIndex pi, bool is_last_entry_from_top=false)
 

Additional Inherited Members

- Protected Member Functions inherited from IMP::Decorator
 Decorator (Model *m, ParticleIndex pi)
 
 Decorator (ParticleAdaptor p)
 

Member Function Documentation

bool IMP::npctransport::Transporting::get_is_last_entry_from_top ( ) const

returns whether the particle last enetered the transport moiety from its

Definition at line 81 of file Transporting.h.

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static IntKey IMP::npctransport::Transporting::get_is_last_entry_from_top_key ( )
static

Get the decorator key for is_last_entry_from_top.

static bool IMP::npctransport::Transporting::get_is_setup ( Model m,
ParticleIndex  pi 
)
static

Return true if the particle is an instance of an Transporting.

Definition at line 66 of file Transporting.h.

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double IMP::npctransport::Transporting::get_last_tracked_z ( ) const

returns the Z coordinate of the particle, the last time it was tracked for transport statistics

Definition at line 96 of file Transporting.h.

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static FloatKey IMP::npctransport::Transporting::get_last_tracked_z_key ( )
static

Get the decorator key last_tracked_z value.

int IMP::npctransport::Transporting::get_n_entries_bottom ( ) const

gets the number of times the particle crossed from the bottom of the barrier into its interior

Definition at line 111 of file Transporting.h.

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static IntKey IMP::npctransport::Transporting::get_n_entries_bottom_key ( )
static

Get the decorator key n_entries_bottom value.

int IMP::npctransport::Transporting::get_n_entries_top ( ) const

gets the number of times the particle crossed from the top of the barrier into its interior

Definition at line 126 of file Transporting.h.

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static IntKey IMP::npctransport::Transporting::get_n_entries_top_key ( )
static

Get the decorator key n_entries_top value.

void IMP::npctransport::Transporting::set_is_last_entry_from_top ( bool  is_last_entry_from_top)

sets whether the particle last enetered the transport moiety from its top

Definition at line 74 of file Transporting.h.

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void IMP::npctransport::Transporting::set_last_tracked_z ( double  last_tracked_z)

set the Z coordinate of the particle, the last time it was tracked for transport statistics

Definition at line 90 of file Transporting.h.

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void IMP::npctransport::Transporting::set_n_entries_bottom ( int  n)

sets the number of times the particle crossed from the bottom of the barrier into its interior

Definition at line 105 of file Transporting.h.

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void IMP::npctransport::Transporting::set_n_entries_top ( int  n)

sets the number of times the particle crossed from the top of the barrier into its interior

Definition at line 120 of file Transporting.h.

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static Transporting IMP::npctransport::Transporting::setup_particle ( Model m,
ParticleIndex  pi,
bool  is_last_entry_from_top = false 
)
static

Decorate a transporting particle, mainly for tracking transport statistics (number of transports, etc.). It is assumed the transport occurs along a z coordinate, and that the crossed barrier is bounded from top and bottom. The last tracked z is set to the z coordinate of p, initially, and n entries from bottom and top are set to 0

See Also
get_last_tracked_z
get_n_entries_bottom
get_n_entries_top
Parameters
mthe model
piparticle index
is_last_entry_from_tophas particle last entered from top of barrier (rather than bottom or unknown)Setup the particle so that it can be used with this decorator

Definition at line 63 of file Transporting.h.

static Transporting IMP::npctransport::Transporting::setup_particle ( IMP::ParticleAdaptor  decorator,
bool  is_last_entry_from_top = false 
)
static
See Also
setup_particle(m, pi, is_last_entry_from_top = false )

Definition at line 63 of file Transporting.h.


The documentation for this class was generated from the following file: