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IMP Reference Guide
2.12.0
The Integrative Modeling Platform
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#include <IMP/npctransport/SlabWithPore.h>
Inheritance diagram for IMP::npctransport::SlabWithPore:A decorator for a particle that represents a slab containing a cylindrical pore
Definition at line 23 of file SlabWithPore.h.
Public Member Functions | |
| SlabWithPore (::IMP::Model *m,::IMP::ParticleIndex id) | |
| SlabWithPore (const IMP::ParticleAdaptor &d) | |
| void | add_to_pore_radius_derivative (double v, DerivativeAccumulator &d) |
| Float | get_pore_radius () const |
| get cylindrical pore radius More... | |
| bool | get_pore_radius_is_optimized () const |
| Float | get_thickness () const |
| returns whether the particle last entered the transport moiety from its More... | |
| void | set_pore_radius (double r) const |
| set cylindrical pore radius More... | |
| void | set_pore_radius_is_optimized (bool tf) const |
| Set whether the coordinates are optimized. More... | |
| void | set_thickness (double thickness) |
| sets slab thickness More... | |
| void | show (std::ostream &out=std::cout) const |
| Public Member Functions inherited from IMP::Decorator | |
| bool | get_is_valid () const |
| Returns true if constructed with a non-default constructor. More... | |
| Model * | get_model () const |
| Returns the Model containing the particle. More... | |
| Particle * | get_particle () const |
| Returns the particle decorated by this decorator. More... | |
| ParticleIndex | get_particle_index () const |
| Returns the particle index decorated by this decorator. More... | |
| operator Particle * () const | |
| operator ParticleIndex () const | |
| Particle * | operator-> () const |
Static Public Member Functions | |
| static bool | get_is_setup (const IMP::ParticleAdaptor &p) |
| static bool | get_is_setup (Model *m, ParticleIndex pi) |
| Return true if the particle is an instance of SlabWithPore. More... | |
| static FloatKey | get_pore_radius_key () |
| Get the key for the pore radius. More... | |
| static FloatKey | get_thickness_key () |
| Get the decorator key for is_last_entry_from_top. More... | |
| static SlabWithPore | setup_particle (IMP::ParticleAdaptor decorator, double thickness, double pore_radius) |
| static SlabWithPore | setup_particle (Model *m, ParticleIndex pi, double thickness, double pore_radius) |
Additional Inherited Members | |
| Protected Member Functions inherited from IMP::Decorator | |
| Decorator (Model *m, ParticleIndex pi) | |
| Decorator (ParticleAdaptor p) | |
| void IMP::npctransport::SlabWithPore::add_to_pore_radius_derivative | ( | double | v, |
| DerivativeAccumulator & | d | ||
| ) |
add v to the derivative of the cylindrical pore radius, using derivative accumulator d
Definition at line 102 of file SlabWithPore.h.
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Return true if the particle is an instance of SlabWithPore.
Definition at line 73 of file SlabWithPore.h.
Here is the call graph for this function:| Float IMP::npctransport::SlabWithPore::get_pore_radius | ( | ) | const |
get cylindrical pore radius
Definition at line 91 of file SlabWithPore.h.
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Get the key for the pore radius.
| Float IMP::npctransport::SlabWithPore::get_thickness | ( | ) | const |
returns whether the particle last entered the transport moiety from its
Definition at line 86 of file SlabWithPore.h.
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Get the decorator key for is_last_entry_from_top.
| void IMP::npctransport::SlabWithPore::set_pore_radius | ( | double | r | ) | const |
set cylindrical pore radius
Definition at line 96 of file SlabWithPore.h.
Here is the call graph for this function:| void IMP::npctransport::SlabWithPore::set_pore_radius_is_optimized | ( | bool | tf | ) | const |
Set whether the coordinates are optimized.
Definition at line 110 of file SlabWithPore.h.
Here is the call graph for this function:| void IMP::npctransport::SlabWithPore::set_thickness | ( | double | thickness | ) |
sets slab thickness
Definition at line 79 of file SlabWithPore.h.
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Decorate a particle that represents a slab (e.g. nuclear envelope) with specified thickness and a cylindrical pore of specified pore_radius.
The slab is parallel to the x,y plain from z=-0.5*thickness to z=0.5*thickness, and the central axis of the pore lies on the origin.
| m | the model |
| pi | the particle index |
| thickness | slab thickness |
| pore_radius | pore radius |
Definition at line 70 of file SlabWithPore.h.