 |
|
IMP Reference Guide
2.12.0
The Integrative Modeling Platform
|
Stores a set of PairContainers. More...
#include <IMP/container/PairContainerSet.h>
Inheritance diagram for IMP::container::PairContainerSet:Stores a set of PairContainers.
The input sets must be disjoint. This can change if there is demand for it.
Definition at line 29 of file PairContainerSet.h.
Public Member Functions | |
| PairContainerSet (Model *m, std::string name="PairContainerSet %1%") | |
| Construct and empty set. More... | |
| PairContainerSet (const PairContainersTemp &pc, std::string name="PairContainerSet %1%") | |
| template<class M > | |
| void | apply_generic (const M *m) const |
| apply modifier sm to all pair containers More... | |
| ParticleIndexes | get_all_possible_indexes () const |
| Get contained particles. More... | |
| virtual std::string | get_type_name () const |
| virtual ::IMP::VersionInfo | get_version_info () const |
| Get information about the module and version of the object. More... | |
| Public Member Functions inherited from IMP::PairContainer | |
| void | apply (const PairModifier *sm) const |
| Apply a SingletonModifier to the contents. More... | |
| void | apply_generic (const PairModifier *m) const |
| Just use apply() in the base class. More... | |
| const ParticleIndexPairs & | get_contents () const |
| virtual ParticleIndexPairs | get_indexes () const =0 |
| ParticlePair | get_particle_pair (unsigned int i) const |
| ParticlePairsTemp | get_particle_pairs () const |
| virtual ParticleIndexPairs | get_range_indexes () const =0 |
| Public Member Functions inherited from IMP::Container | |
| ModelObjectsTemp | do_get_outputs () const |
| containers don't have outputs More... | |
| std::size_t | get_contents_hash () const |
| virtual bool | get_is_decomposable () const |
| Public Member Functions inherited from IMP::ModelObject | |
| ModelObject (Model *m, std::string name) | |
| bool | get_has_dependencies () const |
| Return whether this object has dependencies computed. More... | |
| bool | get_has_required_score_states () const |
| Return whether score states are computed. More... | |
| ModelObjectsTemp | get_inputs () const |
| ModelObjectsTemps | get_interactions () const |
| Get the interacting sets induced by this ModelObject. More... | |
| Model * | get_model () const |
| ModelObjectsTemp | get_outputs () const |
| const ScoreStatesTemp & | get_required_score_states () const |
| Get the score states that are ancestors of this in the dependency graph. More... | |
| void | set_has_dependencies (bool tf) |
| Either invalidate the dependencies or ensure they are correct. More... | |
| void | set_has_required_score_states (bool tf) |
| Compute the required score states. More... | |
| Public Member Functions inherited from IMP::Object | |
| virtual void | clear_caches () |
| CheckLevel | get_check_level () const |
| LogLevel | get_log_level () const |
| void | set_check_level (CheckLevel l) |
| void | set_log_level (LogLevel l) |
| Set the logging level used in this object. More... | |
| void | set_was_used (bool tf) const |
| void | show (std::ostream &out=std::cout) const |
| const std::string & | get_name () const |
| void | set_name (std::string name) |
Protected Member Functions | |
| virtual void | get_indexes_in_place (ParticleIndexPairs &output) const |
| Protected Member Functions inherited from IMP::PairContainer | |
| PairContainer (Model *m, std::string name="PairContainer %1%") | |
| virtual void | do_apply (const PairModifier *sm) const =0 |
| virtual bool | do_get_provides_access () const |
| Protected Member Functions inherited from IMP::Container | |
| Container (Model *m, std::string name="Container %1%") | |
| Protected Member Functions inherited from IMP::ModelObject | |
| virtual ModelObjectsTemp | do_get_inputs () const =0 |
| virtual ModelObjectsTemps | do_get_interactions () const |
| virtual void | handle_set_has_required_score_states (bool) |
| Protected Member Functions inherited from IMP::Object | |
| Object (std::string name) | |
| Construct an object with the given name. More... | |
| virtual void | do_destroy () |
Methods to control the nested container | |
This container merges a set of nested containers. To add or remove nested containers, use the methods below. | |
| void | remove_pair_container (PairContainer *d) |
| void | remove_pair_containers (const PairContainers &d) |
| void | set_pair_containers (const PairContainers &ps) |
| void | set_pair_containers_order (const PairContainers &objs) |
| unsigned int | add_pair_container (PairContainer *obj) |
| void | add_pair_containers (const PairContainers &objs) |
| void | clear_pair_containers () |
| unsigned int | get_number_of_pair_containers () const |
| bool | get_has_pair_containers () |
| PairContainer * | get_pair_container (unsigned int i) const |
| PairContainers | get_pair_containers () const |
| void | reserve_pair_containers (unsigned int sz) |
Additional Inherited Members | |
| Public Types inherited from IMP::PairContainer | |
| typedef ParticleIndexPair | ContainedIndexType |
| typedef ParticleIndexPairs | ContainedIndexTypes |
| typedef ParticlePair | ContainedType |
| typedef ParticlePairsTemp | ContainedTypes |
| typedef PairModifier | Modifier |
| typedef const ParticleIndexPair & | PassContainedIndexType |
| IMP::container::PairContainerSet::PairContainerSet | ( | Model * | m, |
| std::string | name = "PairContainerSet %1%" |
||
| ) |
Construct and empty set.
| void IMP::container::PairContainerSet::apply_generic | ( | const M * | m | ) | const |
apply modifier sm to all pair containers
Definition at line 48 of file PairContainerSet.h.
Here is the call graph for this function:
|
virtual |
Get contained particles.
Get a list of all particles contained in this one, given that the input containers are up to date.
Implements IMP::Container.
|
protectedvirtual |
Insert the contents of the container into output instead of output's current content
|
virtual |
Get information about the module and version of the object.
Reimplemented from IMP::Object.
Definition at line 53 of file PairContainerSet.h.