Detailed Description

A class for fast alignment of a cyclic model to its density.

The class supports Cn and Dn symmetry

Definition at line 23 of file AlignSymmetric.h.

Public Member Functions
	AlignSymmetric (em::DensityMap *dmap, float threshold, int cn_symm_deg)
	Constructor. More...

Floats	get_sorted_principal_values () const

algebra::Transformation3Ds	get_symm_axis_alignments_from_model_to_density (atom::Hierarchies mhs, bool sample_translation, bool fine_rotation_sampling=true) const

int	score_alignment (atom::Hierarchies mhs, float max_allowed_diff)
	Return the number of matching eigen vectors by their eigen values. More...

void	show (std::ostream &out=std::cout) const

Protected Member Functions
algebra::Transformation3Ds	generate_cn_density_rotations (bool fine=false) const

algebra::Transformation3Ds	generate_cn_density_translations () const

Protected Attributes
int	cn_symm_deg_

int	dn_symm_deg_

Floats	map_v_

float	spacing_

boost::scoped_ptr < CnSymmAxisDetector >	symm_map_

Constructor & Destructor Documentation

IMP::cnmultifit::AlignSymmetric::AlignSymmetric	(	em::DensityMap *	dmap,
		float	threshold,
		int	cn_symm_deg
	)

Constructor.

Parameters

[in]	dmap	the density map
[in]	threshold	density threshold used for determining the map PCA
[in]	cn_symm_deg	the ring symmetry degree

algebra::Transformation3Ds IMP::cnmultifit::AlignSymmetric::get_symm_axis_alignments_from_model_to_density	(	atom::Hierarchies	mhs,
		bool	sample_translation,
		bool	fine_rotation_sampling = `true`
	)		const

Return the two alignments that match the model symmetry axis on the density symmetry axis

int IMP::cnmultifit::AlignSymmetric::score_alignment	(	atom::Hierarchies	mhs,
		float	max_allowed_diff
	)

Return the number of matching eigen vectors by their eigen values.

Parameters

[in]	mhs	the model to align with the density
[in]	max_allowed_diff	the maximum allowed difference between matching eigen values

The documentation for this class was generated from the following file: