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IMP Reference Guide
2.11.1
The Integrative Modeling Platform
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A sparse grid of values. More...
#include <IMP/algebra/standard_grids.h>
Inheritance diagram for IMP::algebra::SparseGrid3D< VT >:A sparse grid of values.
In Python SparseIntGrid3D is provided.
Definition at line 78 of file standard_grids.h.
Public Types | |
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typedef GridD < 3, SparseGridStorageD< 3, VT, BoundedGridRangeD< 3 > >, VT, DefaultEmbeddingD< 3 > > | P |
| Public Types inherited from IMP::algebra::GridD< 3, SparseGridStorageD< 3, VT, BoundedGridRangeD< 3 > >, VT, DefaultEmbeddingD< 3 > > | |
| typedef DefaultEmbeddingD< 3 > | Embedding |
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typedef SparseGridStorageD < 3, VT, BoundedGridRangeD< 3 > > | Storage |
| typedef VectorD< D > | Vector |
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typedef internal::GridIndexIterator < ExtendedGridIndexD< D > , internal::AllItHelp < ExtendedGridIndexD< D > , ExtendedGridIndexD< D > > > | ExtendedIndexIterator |
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typedef boost::iterator_range < typename Storage::IndexIterator > | Indexes |
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typedef boost::iterator_range < typename Storage::AllIndexIterator > | AllIndexes |
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typedef boost::iterator_range < ExtendedIndexIterator > | ExtendedIndexes |
| Public Types inherited from IMP::algebra::SparseGridStorageD< 3, VT, BoundedGridRangeD< 3 > > | |
| typedef VT | Value |
| typedef Data::const_iterator | AllConstIterator |
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typedef boost::transform_iterator < GetIndex, AllConstIterator > | AllIndexIterator |
| Public Types inherited from IMP::algebra::BoundedGridRangeD< 3 > | |
| typedef ExtendedGridIndexD< D > | ExtendedIndex |
| typedef GridIndexD< D > | Index |
Public Member Functions | |
| SparseGrid3D (double side, const BoundingBoxD< 3 > &bb, VT def=VT()) | |
| SparseGrid3D (int xd, int yd, int zd, const BoundingBoxD< 3 > &bb, VT def=VT()) | |
| Public Member Functions inherited from IMP::algebra::GridD< 3, SparseGridStorageD< 3, VT, BoundedGridRangeD< 3 > >, VT, DefaultEmbeddingD< 3 > > | |
| GridD (const Ints counts, const BoundingBoxD< D > &bb, VTdefault_value=VT()) | |
| GridD (double side, const BoundingBoxD< D > &bb, const VT &default_value=VT()) | |
| GridD (const VectorD< D > &sides, const BoundingBoxD< D > &bb, const VT &default_value=VT()) | |
| GridD (const Storage &storage, const Embedding &embed) | |
| GridD (double side, const VectorD< D > &origin, const VT &default_value=VT()) | |
| GridD (const VectorD< D > &sides, const VectorD< D > &origin, const VT &default_value=VT()) | |
| GridD () | |
| An empty, undefined grid. More... | |
| GridIndexD< D > | add_voxel (const VectorD< D > &pt, const VT &vt) |
| const VT | at (VectorD< D >) const |
| VT & | at (VectorD< D >) |
| BoundingBoxD< D > | get_bounding_box () const |
| ExtendedGridIndexD< D > | get_extended_index (const GridIndexD< D > &index) const |
| Convert an index back to an extended index. More... | |
| VT & | operator[] (VectorD< D >) |
| const VT | operator[] (VectorD< D >) const |
| void | set_bounding_box (const BoundingBoxD< D > &bb3) |
| Change the bounding box but not the grid or contents. More... | |
| void | show (std::ostream &out=std::cout) const |
| VoxelIterator | voxels_begin (const BoundingBoxD< D > &bb) |
| VoxelConstIterator | voxels_begin (const BoundingBoxD< D > &bb) const |
| VoxelIterator | voxels_end (const BoundingBoxD< D > &bb) |
| VoxelConstIterator | voxels_end (const BoundingBoxD< D > &bb) const |
| Storage::IndexIterator | indexes_begin (const BoundingBoxD< D > &bb) const |
| Storage::IndexIterator | indexes_end (const BoundingBoxD< D > &) const |
| ExtendedIndexIterator | extended_indexes_begin (const BoundingBoxD< D > &bb) const |
| ExtendedIndexIterator | extended_indexes_end (const BoundingBoxD< D > &) const |
| Indexes | get_indexes (const BoundingBoxD< D > &bb) const |
| AllIndexes | get_all_indexes () const |
| ExtendedIndexes | get_extended_indexes (const BoundingBoxD< D > &bb) const |
| GridIndexD< D > | get_nearest_index (const VectorD< D > &pt) const |
| ExtendedGridIndexD< D > | get_nearest_extended_index (const VectorD< D > &pt) const |
| Functor | apply (const Functor &f) const |
| Public Member Functions inherited from IMP::algebra::SparseGridStorageD< 3, VT, BoundedGridRangeD< 3 > > | |
| SparseGridStorageD (const Ints &counts, const VT &default_value) | |
| GridIndexD< D > | add_voxel (const ExtendedGridIndexD< D > &i, const VT &gi) |
| Add a voxel to the storage, this voxel will now have a GridIndex3D. More... | |
| Functor | apply (const Grid &g, Functor f) const |
| bool | get_has_index (const ExtendedGridIndexD< D > &i) const |
| Return true if the voxel has been added. More... | |
| GridIndexD< D > | get_index (const ExtendedGridIndexD< D > &i) const |
| requires get_has_index(i) is true. More... | |
| unsigned int | get_number_of_voxels () const |
| void | remove_voxel (const GridIndexD< D > &gi) |
| void | show (std::ostream &out=std::cout) const |
| AllConstIterator | all_begin () const |
| AllConstIterator | all_end () const |
| AllIndexIterator | all_indexes_begin () const |
| AllIndexIterator | all_indexes_end () const |
| const VT | at (GridIndexD< D >) const |
| VT & | at (GridIndexD< D >) |
| const VT | operator[] (GridIndexD< D >) const |
| VT & | operator[] (GridIndexD< D >) |
| IndexIterator | indexes_begin (const ExtendedGridIndexD< D > &lb, const ExtendedGridIndexD< D > &ub) const |
| IndexIterator | indexes_end (const ExtendedGridIndexD< D > &, const ExtendedGridIndexD< D > &) const |
| Vector< GridIndexD< D > > | get_indexes (const ExtendedGridIndexD< D > &lb, const ExtendedGridIndexD< D > &ub) const |
| Public Member Functions inherited from IMP::algebra::BoundedGridRangeD< 3 > | |
| BoundedGridRangeD (const Ints &counts) | |
| ExtendedGridIndexD< D > | get_end_index () const |
| Get the past-end voxel. More... | |
| bool | get_has_index (const ExtendedGridIndexD< D > &v) const |
| Return true if the ExtendedIndex is also a normal index value. More... | |
| GridIndexD< D > | get_index (const ExtendedGridIndexD< D > &v) const |
| Convert a ExtendedIndex into a real Index if possible. More... | |
| ExtendedGridIndexD< D > | get_maximum_extended_index () const |
| Return the index of the maximal cell. More... | |
| ExtendedGridIndexD< D > | get_minimum_extended_index () const |
| Return the ExtendedGridIndexD of all zeros. More... | |
| unsigned int | get_number_of_voxels (unsigned int i) const |
| Return the number of voxels in a certain direction. More... | |
| unsigned int | get_number_of_voxels () const |
| void | show (std::ostream &out=std::cout) const |
| AllIndexIterator | all_indexes_begin () const |
| AllIndexIterator | all_indexes_end () const |
| Vector< GridIndexD< D > > | get_all_indexes () const |
| IndexIterator | indexes_begin (const ExtendedGridIndexD< D > &lb, const ExtendedGridIndexD< D > &ub) const |
| IndexIterator | indexes_end (const ExtendedGridIndexD< D > &, const ExtendedGridIndexD< D > &) const |
| ExtendedIndexIterator | extended_indexes_begin (const ExtendedGridIndexD< D > &lb, const ExtendedGridIndexD< D > &ub) const |
| ExtendedIndexIterator | extended_indexes_end (const ExtendedGridIndexD< D > &, const ExtendedGridIndexD< D > &) const |
| Vector< GridIndexD< D > > | get_indexes (const ExtendedGridIndexD< D > &lb, const ExtendedGridIndexD< D > &ub) const |
| Vector< ExtendedGridIndexD< D > > | get_extended_indexes (const ExtendedGridIndexD< D > &lb, const ExtendedGridIndexD< D > &ub) const |
| Public Member Functions inherited from IMP::algebra::DefaultEmbeddingD< 3 > | |
| DefaultEmbeddingD (const VectorD< D > &origin, const VectorD< D > &cell) | |
| unsigned int | get_dimension () const |
| ExtendedGridIndexD< D > | get_extended_index (const VectorD< D > &o) const |
| Return the index that would contain the voxel if the grid extended there. More... | |
| GridIndexD< D > | get_index (const VectorD< D > &o) const |
| const VectorD< D > | get_origin () const |
| const VectorD< D > & | get_unit_cell () const |
| Return the unit cell, relative to the origin. More... | |
| void | set_origin (const VectorD< D > &o) |
| void | set_unit_cell (const VectorD< D > &o) |
| void | show (std::ostream &out=std::cout) const |
| VectorD< D > | get_center (const ExtendedGridIndexD< D > &ei) const |
| VectorD< D > | get_center (const GridIndexD< D > &ei) const |
| BoundingBoxD< D > | get_bounding_box (const ExtendedGridIndexD< D > &ei) const |
| BoundingBoxD< D > | get_bounding_box (const GridIndexD< D > &ei) const |