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IMP Reference Guide  2.11.1
The Integrative Modeling Platform
core/__init__.py
1 # This file was automatically generated by SWIG (http://www.swig.org).
2 # Version 3.0.10
3 #
4 # Do not make changes to this file unless you know what you are doing--modify
5 # the SWIG interface file instead.
6 
7 # This wrapper is part of IMP,
8 # Copyright 2007-2019 IMP Inventors. All rights reserved.
9 
10 from __future__ import print_function, division, absolute_import
11 
12 
13 
14 
15 from sys import version_info as _swig_python_version_info
16 if _swig_python_version_info >= (2, 7, 0):
17  def swig_import_helper():
18  import importlib
19  pkg = __name__.rpartition('.')[0]
20  mname = '.'.join((pkg, '_IMP_core')).lstrip('.')
21  try:
22  return importlib.import_module(mname)
23  except ImportError:
24  return importlib.import_module('_IMP_core')
25  _IMP_core = swig_import_helper()
26  del swig_import_helper
27 elif _swig_python_version_info >= (2, 6, 0):
28  def swig_import_helper():
29  from os.path import dirname
30  import imp
31  fp = None
32  try:
33  fp, pathname, description = imp.find_module('_IMP_core', [dirname(__file__)])
34  except ImportError:
35  import _IMP_core
36  return _IMP_core
37  if fp is not None:
38  try:
39  _mod = imp.load_module('_IMP_core', fp, pathname, description)
40  finally:
41  fp.close()
42  return _mod
43  _IMP_core = swig_import_helper()
44  del swig_import_helper
45 else:
46  import _IMP_core
47 del _swig_python_version_info
48 try:
49  _swig_property = property
50 except NameError:
51  pass # Python < 2.2 doesn't have 'property'.
52 
53 try:
54  import builtins as __builtin__
55 except ImportError:
56  import __builtin__
57 
58 def _swig_setattr_nondynamic(self, class_type, name, value, static=1):
59  if (name == "thisown"):
60  return self.this.own(value)
61  if (name == "this"):
62  if type(value).__name__ == 'SwigPyObject':
63  self.__dict__[name] = value
64  return
65  method = class_type.__swig_setmethods__.get(name, None)
66  if method:
67  return method(self, value)
68  if (not static):
69  object.__setattr__(self, name, value)
70  else:
71  raise AttributeError("You cannot add attributes to %s" % self)
72 
73 
74 def _swig_setattr(self, class_type, name, value):
75  return _swig_setattr_nondynamic(self, class_type, name, value, 0)
76 
77 
78 def _swig_getattr(self, class_type, name):
79  if (name == "thisown"):
80  return self.this.own()
81  method = class_type.__swig_getmethods__.get(name, None)
82  if method:
83  return method(self)
84  raise AttributeError("'%s' object has no attribute '%s'" % (class_type.__name__, name))
85 
86 
87 def _swig_repr(self):
88  try:
89  strthis = "proxy of " + self.this.__repr__()
90  except __builtin__.Exception:
91  strthis = ""
92  return "<%s.%s; %s >" % (self.__class__.__module__, self.__class__.__name__, strthis,)
93 
94 
95 def _swig_setattr_nondynamic_method(set):
96  def set_attr(self, name, value):
97  if (name == "thisown"):
98  return self.this.own(value)
99  if hasattr(self, name) or (name == "this"):
100  set(self, name, value)
101  else:
102  raise AttributeError("You cannot add attributes to %s" % self)
103  return set_attr
104 
105 
106 try:
107  import weakref
108  weakref_proxy = weakref.proxy
109 except __builtin__.Exception:
110  weakref_proxy = lambda x: x
111 
112 
113 class IMP_CORE_SwigPyIterator(object):
114  """Proxy of C++ swig::IMP_CORE_SwigPyIterator class."""
115 
116  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
117 
118  def __init__(self, *args, **kwargs):
119  raise AttributeError("No constructor defined - class is abstract")
120  __repr__ = _swig_repr
121  __swig_destroy__ = _IMP_core.delete_IMP_CORE_SwigPyIterator
122  __del__ = lambda self: None
123 
124  def value(self):
125  """value(IMP_CORE_SwigPyIterator self) -> PyObject *"""
126  return _IMP_core.IMP_CORE_SwigPyIterator_value(self)
127 
128 
129  def incr(self, n=1):
130  """
131  incr(IMP_CORE_SwigPyIterator self, size_t n=1) -> IMP_CORE_SwigPyIterator
132  incr(IMP_CORE_SwigPyIterator self) -> IMP_CORE_SwigPyIterator
133  """
134  return _IMP_core.IMP_CORE_SwigPyIterator_incr(self, n)
135 
136 
137  def decr(self, n=1):
138  """
139  decr(IMP_CORE_SwigPyIterator self, size_t n=1) -> IMP_CORE_SwigPyIterator
140  decr(IMP_CORE_SwigPyIterator self) -> IMP_CORE_SwigPyIterator
141  """
142  return _IMP_core.IMP_CORE_SwigPyIterator_decr(self, n)
143 
144 
145  def distance(self, x):
146  """distance(IMP_CORE_SwigPyIterator self, IMP_CORE_SwigPyIterator x) -> ptrdiff_t"""
147  return _IMP_core.IMP_CORE_SwigPyIterator_distance(self, x)
148 
149 
150  def equal(self, x):
151  """equal(IMP_CORE_SwigPyIterator self, IMP_CORE_SwigPyIterator x) -> bool"""
152  return _IMP_core.IMP_CORE_SwigPyIterator_equal(self, x)
153 
154 
155  def copy(self):
156  """copy(IMP_CORE_SwigPyIterator self) -> IMP_CORE_SwigPyIterator"""
157  return _IMP_core.IMP_CORE_SwigPyIterator_copy(self)
158 
159 
160  def next(self):
161  """next(IMP_CORE_SwigPyIterator self) -> PyObject *"""
162  return _IMP_core.IMP_CORE_SwigPyIterator_next(self)
163 
164 
165  def __next__(self):
166  """__next__(IMP_CORE_SwigPyIterator self) -> PyObject *"""
167  return _IMP_core.IMP_CORE_SwigPyIterator___next__(self)
168 
169 
170  def previous(self):
171  """previous(IMP_CORE_SwigPyIterator self) -> PyObject *"""
172  return _IMP_core.IMP_CORE_SwigPyIterator_previous(self)
173 
174 
175  def advance(self, n):
176  """advance(IMP_CORE_SwigPyIterator self, ptrdiff_t n) -> IMP_CORE_SwigPyIterator"""
177  return _IMP_core.IMP_CORE_SwigPyIterator_advance(self, n)
178 
179 
180  def __eq__(self, x):
181  """__eq__(IMP_CORE_SwigPyIterator self, IMP_CORE_SwigPyIterator x) -> bool"""
182  return _IMP_core.IMP_CORE_SwigPyIterator___eq__(self, x)
183 
184 
185  def __ne__(self, x):
186  """__ne__(IMP_CORE_SwigPyIterator self, IMP_CORE_SwigPyIterator x) -> bool"""
187  return _IMP_core.IMP_CORE_SwigPyIterator___ne__(self, x)
188 
189 
190  def __iadd__(self, n):
191  """__iadd__(IMP_CORE_SwigPyIterator self, ptrdiff_t n) -> IMP_CORE_SwigPyIterator"""
192  return _IMP_core.IMP_CORE_SwigPyIterator___iadd__(self, n)
193 
194 
195  def __isub__(self, n):
196  """__isub__(IMP_CORE_SwigPyIterator self, ptrdiff_t n) -> IMP_CORE_SwigPyIterator"""
197  return _IMP_core.IMP_CORE_SwigPyIterator___isub__(self, n)
198 
199 
200  def __add__(self, n):
201  """__add__(IMP_CORE_SwigPyIterator self, ptrdiff_t n) -> IMP_CORE_SwigPyIterator"""
202  return _IMP_core.IMP_CORE_SwigPyIterator___add__(self, n)
203 
204 
205  def __sub__(self, *args):
206  """
207  __sub__(IMP_CORE_SwigPyIterator self, ptrdiff_t n) -> IMP_CORE_SwigPyIterator
208  __sub__(IMP_CORE_SwigPyIterator self, IMP_CORE_SwigPyIterator x) -> ptrdiff_t
209  """
210  return _IMP_core.IMP_CORE_SwigPyIterator___sub__(self, *args)
211 
212  def __iter__(self):
213  return self
214 IMP_CORE_SwigPyIterator_swigregister = _IMP_core.IMP_CORE_SwigPyIterator_swigregister
215 IMP_CORE_SwigPyIterator_swigregister(IMP_CORE_SwigPyIterator)
216 
217 
218 _value_types=[]
219 _object_types=[]
220 _raii_types=[]
221 _plural_types=[]
222 
223 IMP_DEBUG = _IMP_core.IMP_DEBUG
224 IMP_RELEASE = _IMP_core.IMP_RELEASE
225 IMP_SILENT = _IMP_core.IMP_SILENT
226 IMP_PROGRESS = _IMP_core.IMP_PROGRESS
227 IMP_TERSE = _IMP_core.IMP_TERSE
228 IMP_VERBOSE = _IMP_core.IMP_VERBOSE
229 IMP_MEMORY = _IMP_core.IMP_MEMORY
230 IMP_NONE = _IMP_core.IMP_NONE
231 IMP_USAGE = _IMP_core.IMP_USAGE
232 IMP_INTERNAL = _IMP_core.IMP_INTERNAL
233 IMP_KERNEL_HAS_LOG4CXX = _IMP_core.IMP_KERNEL_HAS_LOG4CXX
234 IMP_COMPILER_HAS_AUTO = _IMP_core.IMP_COMPILER_HAS_AUTO
235 IMP_COMPILER_HAS_DEBUG_VECTOR = _IMP_core.IMP_COMPILER_HAS_DEBUG_VECTOR
236 IMP_COMPILER_HAS_UNIQUE_PTR = _IMP_core.IMP_COMPILER_HAS_UNIQUE_PTR
237 IMP_KERNEL_HAS_BOOST_RANDOM = _IMP_core.IMP_KERNEL_HAS_BOOST_RANDOM
238 IMP_KERNEL_HAS_NUMPY = _IMP_core.IMP_KERNEL_HAS_NUMPY
239 IMP_KERNEL_HAS_GPERFTOOLS = _IMP_core.IMP_KERNEL_HAS_GPERFTOOLS
240 IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER = _IMP_core.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER
241 IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER = _IMP_core.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER
242 IMPKERNEL_SHOW_WARNINGS = _IMP_core.IMPKERNEL_SHOW_WARNINGS
243 
244 import sys
245 class _DirectorObjects(object):
246  """@internal Simple class to keep references to director objects
247  to prevent premature deletion."""
248  def __init__(self):
249  self._objects = []
250  def register(self, obj):
251  """Take a reference to a director object; will only work for
252  refcounted C++ classes"""
253  if hasattr(obj, 'get_ref_count'):
254  self._objects.append(obj)
255  def cleanup(self):
256  """Only drop our reference and allow cleanup by Python if no other
257  Python references exist (we hold 3 references: one in self._objects,
258  one in x, and one in the argument list for getrefcount) *and* no
259  other C++ references exist (the Python object always holds one)"""
260  objs = [x for x in self._objects if sys.getrefcount(x) > 3 \
261  or x.get_ref_count() > 1]
262 # Do in two steps so the references are kept until the end of the
263 # function (deleting references may trigger a fresh call to this method)
264  self._objects = objs
265  def get_object_count(self):
266  """Get number of director objects (useful for testing only)"""
267  return len(self._objects)
268 _director_objects = _DirectorObjects()
269 
270 class _ostream(object):
271  """Proxy of C++ std::ostream class."""
272 
273  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
274 
275  def __init__(self, *args, **kwargs):
276  raise AttributeError("No constructor defined")
277  __repr__ = _swig_repr
278 
279  def write(self, osa_buf):
280  """write(_ostream self, char const * osa_buf)"""
281  return _IMP_core._ostream_write(self, osa_buf)
282 
283 _ostream_swigregister = _IMP_core._ostream_swigregister
284 _ostream_swigregister(_ostream)
285 
286 IMP_COMPILER_HAS_OVERRIDE = _IMP_core.IMP_COMPILER_HAS_OVERRIDE
287 IMP_COMPILER_HAS_FINAL = _IMP_core.IMP_COMPILER_HAS_FINAL
288 IMP_HAS_NOEXCEPT = _IMP_core.IMP_HAS_NOEXCEPT
289 IMP_C_OPEN_BINARY = _IMP_core.IMP_C_OPEN_BINARY
290 import IMP
291 IMP_CGAL_HAS_BOOST_FILESYSTEM = _IMP_core.IMP_CGAL_HAS_BOOST_FILESYSTEM
292 IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS = _IMP_core.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS
293 IMP_CGAL_HAS_BOOST_RANDOM = _IMP_core.IMP_CGAL_HAS_BOOST_RANDOM
294 IMP_CGAL_HAS_BOOST_SYSTEM = _IMP_core.IMP_CGAL_HAS_BOOST_SYSTEM
295 IMP_CGAL_HAS_NUMPY = _IMP_core.IMP_CGAL_HAS_NUMPY
296 IMPCGAL_SHOW_WARNINGS = _IMP_core.IMPCGAL_SHOW_WARNINGS
297 import IMP.cgal
298 IMP_ALGEBRA_HAS_IMP_CGAL = _IMP_core.IMP_ALGEBRA_HAS_IMP_CGAL
299 IMP_ALGEBRA_HAS_BOOST_FILESYSTEM = _IMP_core.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM
300 IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS = _IMP_core.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS
301 IMP_ALGEBRA_HAS_BOOST_RANDOM = _IMP_core.IMP_ALGEBRA_HAS_BOOST_RANDOM
302 IMP_ALGEBRA_HAS_BOOST_SYSTEM = _IMP_core.IMP_ALGEBRA_HAS_BOOST_SYSTEM
303 IMP_ALGEBRA_HAS_CGAL = _IMP_core.IMP_ALGEBRA_HAS_CGAL
304 IMP_ALGEBRA_HAS_NUMPY = _IMP_core.IMP_ALGEBRA_HAS_NUMPY
305 IMP_ALGEBRA_HAS_ANN = _IMP_core.IMP_ALGEBRA_HAS_ANN
306 IMPALGEBRA_SHOW_WARNINGS = _IMP_core.IMPALGEBRA_SHOW_WARNINGS
307 import IMP.algebra
308 IMP_DISPLAY_HAS_IMP_CGAL = _IMP_core.IMP_DISPLAY_HAS_IMP_CGAL
309 IMP_DISPLAY_HAS_BOOST_FILESYSTEM = _IMP_core.IMP_DISPLAY_HAS_BOOST_FILESYSTEM
310 IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS = _IMP_core.IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS
311 IMP_DISPLAY_HAS_BOOST_RANDOM = _IMP_core.IMP_DISPLAY_HAS_BOOST_RANDOM
312 IMP_DISPLAY_HAS_BOOST_SYSTEM = _IMP_core.IMP_DISPLAY_HAS_BOOST_SYSTEM
313 IMP_DISPLAY_HAS_CGAL = _IMP_core.IMP_DISPLAY_HAS_CGAL
314 IMP_DISPLAY_HAS_NUMPY = _IMP_core.IMP_DISPLAY_HAS_NUMPY
315 IMPDISPLAY_SHOW_WARNINGS = _IMP_core.IMPDISPLAY_SHOW_WARNINGS
316 import IMP.display
317 IMP_SCORE_FUNCTOR_HAS_IMP_CGAL = _IMP_core.IMP_SCORE_FUNCTOR_HAS_IMP_CGAL
318 IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM = _IMP_core.IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM
319 IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS = _IMP_core.IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS
320 IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM = _IMP_core.IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM
321 IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM = _IMP_core.IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM
322 IMP_SCORE_FUNCTOR_HAS_CGAL = _IMP_core.IMP_SCORE_FUNCTOR_HAS_CGAL
323 IMP_SCORE_FUNCTOR_HAS_HDF5 = _IMP_core.IMP_SCORE_FUNCTOR_HAS_HDF5
324 IMP_SCORE_FUNCTOR_HAS_NUMPY = _IMP_core.IMP_SCORE_FUNCTOR_HAS_NUMPY
325 IMPSCOREFUNCTOR_SHOW_WARNINGS = _IMP_core.IMPSCOREFUNCTOR_SHOW_WARNINGS
326 import IMP.score_functor
327 IMP_CORE_HAS_IMP_CGAL = _IMP_core.IMP_CORE_HAS_IMP_CGAL
328 IMP_CORE_HAS_IMP_KERNEL = _IMP_core.IMP_CORE_HAS_IMP_KERNEL
329 IMP_CORE_HAS_BOOST_FILESYSTEM = _IMP_core.IMP_CORE_HAS_BOOST_FILESYSTEM
330 IMP_CORE_HAS_BOOST_PROGRAMOPTIONS = _IMP_core.IMP_CORE_HAS_BOOST_PROGRAMOPTIONS
331 IMP_CORE_HAS_BOOST_RANDOM = _IMP_core.IMP_CORE_HAS_BOOST_RANDOM
332 IMP_CORE_HAS_BOOST_SYSTEM = _IMP_core.IMP_CORE_HAS_BOOST_SYSTEM
333 IMP_CORE_HAS_CGAL = _IMP_core.IMP_CORE_HAS_CGAL
334 IMP_CORE_HAS_HDF5 = _IMP_core.IMP_CORE_HAS_HDF5
335 IMP_CORE_HAS_NUMPY = _IMP_core.IMP_CORE_HAS_NUMPY
336 IMPCORE_SHOW_WARNINGS = _IMP_core.IMPCORE_SHOW_WARNINGS
337 class _OpenCubicSplineBase(IMP.UnaryFunction):
338  """Proxy of C++ IMP::score_functor::ScoreUnaryFunction<(IMP::score_functor::OpenCubicSpline)> class."""
339 
340  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
341  __repr__ = _swig_repr
342 
343  def __init__(self, *args):
344  """
345  __init__(IMP::score_functor::ScoreUnaryFunction<(IMP::score_functor::OpenCubicSpline)> self, IMP::score_functor::OpenCubicSpline const & score, std::string name) -> _OpenCubicSplineBase
346  __init__(IMP::score_functor::ScoreUnaryFunction<(IMP::score_functor::OpenCubicSpline)> self, IMP::score_functor::OpenCubicSpline const & score) -> _OpenCubicSplineBase
347  """
348  this = _IMP_core.new__OpenCubicSplineBase(*args)
349  try:
350  self.this.append(this)
351  except __builtin__.Exception:
352  self.this = this
353 
354  def get_version_info(self):
355  """get_version_info(_OpenCubicSplineBase self) -> VersionInfo"""
356  return _IMP_core._OpenCubicSplineBase_get_version_info(self)
357 
358 _OpenCubicSplineBase_swigregister = _IMP_core._OpenCubicSplineBase_swigregister
359 _OpenCubicSplineBase_swigregister(_OpenCubicSplineBase)
360 
361 
362 _object_types.append("MonteCarloMover")
363 
364 
365 def _object_cast_to_MonteCarloMover(o):
366  """_object_cast_to_MonteCarloMover(Object o) -> MonteCarloMover"""
367  return _IMP_core._object_cast_to_MonteCarloMover(o)
368 
369 MonteCarloMoverResults=list
370 _plural_types.append("MonteCarloMoverResults")
371 _value_types.append("MonteCarloMoverResult")
372 
373 
374 _object_types.append("AngleRestraint")
375 
376 
377 def _object_cast_to_AngleRestraint(o):
378  """_object_cast_to_AngleRestraint(Object o) -> AngleRestraint"""
379  return _IMP_core._object_cast_to_AngleRestraint(o)
380 
381 _object_types.append("AngleTripletScore")
382 
383 
384 def _object_cast_to_AngleTripletScore(o):
385  """_object_cast_to_AngleTripletScore(Object o) -> AngleTripletScore"""
386  return _IMP_core._object_cast_to_AngleTripletScore(o)
387 
388 _object_types.append("AttributeSingletonScore")
389 
390 
391 def _object_cast_to_AttributeSingletonScore(o):
392  """_object_cast_to_AttributeSingletonScore(Object o) -> AttributeSingletonScore"""
393  return _IMP_core._object_cast_to_AttributeSingletonScore(o)
394 
395 _object_types.append("BallMover")
396 
397 
398 def _object_cast_to_BallMover(o):
399  """_object_cast_to_BallMover(Object o) -> BallMover"""
400  return _IMP_core._object_cast_to_BallMover(o)
401 
402 _object_types.append("SerialMover")
403 
404 
405 def _object_cast_to_SerialMover(o):
406  """_object_cast_to_SerialMover(Object o) -> SerialMover"""
407  return _IMP_core._object_cast_to_SerialMover(o)
408 
409 _object_types.append("SubsetMover")
410 
411 
412 def _object_cast_to_SubsetMover(o):
413  """_object_cast_to_SubsetMover(Object o) -> SubsetMover"""
414  return _IMP_core._object_cast_to_SubsetMover(o)
415 
416 _object_types.append("DirectionMover")
417 
418 
419 def _object_cast_to_DirectionMover(o):
420  """_object_cast_to_DirectionMover(Object o) -> DirectionMover"""
421  return _IMP_core._object_cast_to_DirectionMover(o)
422 
423 _object_types.append("SurfaceMover")
424 
425 
426 def _object_cast_to_SurfaceMover(o):
427  """_object_cast_to_SurfaceMover(Object o) -> SurfaceMover"""
428  return _IMP_core._object_cast_to_SurfaceMover(o)
429 
430 _object_types.append("BoundingBox3DSingletonScore")
431 
432 
433 def _object_cast_to_BoundingBox3DSingletonScore(o):
434  """_object_cast_to_BoundingBox3DSingletonScore(Object o) -> BoundingBox3DSingletonScore"""
435  return _IMP_core._object_cast_to_BoundingBox3DSingletonScore(o)
436 
437 _object_types.append("BoundingSphere3DSingletonScore")
438 
439 
440 def _object_cast_to_BoundingSphere3DSingletonScore(o):
441  """_object_cast_to_BoundingSphere3DSingletonScore(Object o) -> BoundingSphere3DSingletonScore"""
442  return _IMP_core._object_cast_to_BoundingSphere3DSingletonScore(o)
443 
444 _object_types.append("BoxSweepClosePairsFinder")
445 
446 
447 def _object_cast_to_BoxSweepClosePairsFinder(o):
448  """_object_cast_to_BoxSweepClosePairsFinder(Object o) -> BoxSweepClosePairsFinder"""
449  return _IMP_core._object_cast_to_BoxSweepClosePairsFinder(o)
450 
451 _object_types.append("NearestNeighborsClosePairsFinder")
452 
453 
454 def _object_cast_to_NearestNeighborsClosePairsFinder(o):
455  """_object_cast_to_NearestNeighborsClosePairsFinder(Object o) -> NearestNeighborsClosePairsFinder"""
456  return _IMP_core._object_cast_to_NearestNeighborsClosePairsFinder(o)
457 
458 _object_types.append("CentroidOfRefined")
459 
460 
461 def _object_cast_to_CentroidOfRefined(o):
462  """_object_cast_to_CentroidOfRefined(Object o) -> CentroidOfRefined"""
463  return _IMP_core._object_cast_to_CentroidOfRefined(o)
464 
465 _object_types.append("ChecksScoreState")
466 
467 
468 def _object_cast_to_ChecksScoreState(o):
469  """_object_cast_to_ChecksScoreState(Object o) -> ChecksScoreState"""
470  return _IMP_core._object_cast_to_ChecksScoreState(o)
471 
472 _object_types.append("ChildrenRefiner")
473 
474 
475 def _object_cast_to_ChildrenRefiner(o):
476  """_object_cast_to_ChildrenRefiner(Object o) -> ChildrenRefiner"""
477  return _IMP_core._object_cast_to_ChildrenRefiner(o)
478 
479 _object_types.append("ClosePairsFinder")
480 
481 
482 def _object_cast_to_ClosePairsFinder(o):
483  """_object_cast_to_ClosePairsFinder(Object o) -> ClosePairsFinder"""
484  return _IMP_core._object_cast_to_ClosePairsFinder(o)
485 
486 _object_types.append("ClosePairsPairScore")
487 
488 
489 def _object_cast_to_ClosePairsPairScore(o):
490  """_object_cast_to_ClosePairsPairScore(Object o) -> ClosePairsPairScore"""
491  return _IMP_core._object_cast_to_ClosePairsPairScore(o)
492 
493 _object_types.append("ClosedCubicSpline")
494 
495 
496 def _object_cast_to_ClosedCubicSpline(o):
497  """_object_cast_to_ClosedCubicSpline(Object o) -> ClosedCubicSpline"""
498  return _IMP_core._object_cast_to_ClosedCubicSpline(o)
499 
500 _object_types.append("ConjugateGradients")
501 
502 
503 def _object_cast_to_ConjugateGradients(o):
504  """_object_cast_to_ConjugateGradients(Object o) -> ConjugateGradients"""
505  return _IMP_core._object_cast_to_ConjugateGradients(o)
506 
507 _object_types.append("ConnectivityRestraint")
508 
509 
510 def _object_cast_to_ConnectivityRestraint(o):
511  """_object_cast_to_ConnectivityRestraint(Object o) -> ConnectivityRestraint"""
512  return _IMP_core._object_cast_to_ConnectivityRestraint(o)
513 
514 _object_types.append("ConstantRestraint")
515 
516 
517 def _object_cast_to_ConstantRestraint(o):
518  """_object_cast_to_ConstantRestraint(Object o) -> ConstantRestraint"""
519  return _IMP_core._object_cast_to_ConstantRestraint(o)
520 
521 _object_types.append("Cosine")
522 
523 
524 def _object_cast_to_Cosine(o):
525  """_object_cast_to_Cosine(Object o) -> Cosine"""
526  return _IMP_core._object_cast_to_Cosine(o)
527 
528 _object_types.append("CoverRefined")
529 
530 
531 def _object_cast_to_CoverRefined(o):
532  """_object_cast_to_CoverRefined(Object o) -> CoverRefined"""
533  return _IMP_core._object_cast_to_CoverRefined(o)
534 
535 _object_types.append("DerivativesFromRefined")
536 
537 
538 def _object_cast_to_DerivativesFromRefined(o):
539  """_object_cast_to_DerivativesFromRefined(Object o) -> DerivativesFromRefined"""
540  return _IMP_core._object_cast_to_DerivativesFromRefined(o)
541 
542 _object_types.append("DerivativesToRefined")
543 
544 
545 def _object_cast_to_DerivativesToRefined(o):
546  """_object_cast_to_DerivativesToRefined(Object o) -> DerivativesToRefined"""
547  return _IMP_core._object_cast_to_DerivativesToRefined(o)
548 
549 _object_types.append("WeightedDerivativesToRefined")
550 
551 
552 def _object_cast_to_WeightedDerivativesToRefined(o):
553  """_object_cast_to_WeightedDerivativesToRefined(Object o) -> IMP::core::WeightedDerivativesToRefined *"""
554  return _IMP_core._object_cast_to_WeightedDerivativesToRefined(o)
555 
556 _object_types.append("DiameterRestraint")
557 
558 
559 def _object_cast_to_DiameterRestraint(o):
560  """_object_cast_to_DiameterRestraint(Object o) -> DiameterRestraint"""
561  return _IMP_core._object_cast_to_DiameterRestraint(o)
562 
563 _object_types.append("DihedralRestraint")
564 
565 
566 def _object_cast_to_DihedralRestraint(o):
567  """_object_cast_to_DihedralRestraint(Object o) -> DihedralRestraint"""
568  return _IMP_core._object_cast_to_DihedralRestraint(o)
569 
570 _object_types.append("DistanceRestraint")
571 
572 
573 def _object_cast_to_DistanceRestraint(o):
574  """_object_cast_to_DistanceRestraint(Object o) -> DistanceRestraint"""
575  return _IMP_core._object_cast_to_DistanceRestraint(o)
576 
577 _object_types.append("DistanceToSingletonScore")
578 
579 
580 def _object_cast_to_DistanceToSingletonScore(o):
581  """_object_cast_to_DistanceToSingletonScore(Object o) -> DistanceToSingletonScore"""
582  return _IMP_core._object_cast_to_DistanceToSingletonScore(o)
583 
584 _object_types.append("ExcludedVolumeRestraint")
585 
586 
587 def _object_cast_to_ExcludedVolumeRestraint(o):
588  """_object_cast_to_ExcludedVolumeRestraint(Object o) -> ExcludedVolumeRestraint"""
589  return _IMP_core._object_cast_to_ExcludedVolumeRestraint(o)
590 
591 _object_types.append("FixedRefiner")
592 
593 
594 def _object_cast_to_FixedRefiner(o):
595  """_object_cast_to_FixedRefiner(Object o) -> FixedRefiner"""
596  return _IMP_core._object_cast_to_FixedRefiner(o)
597 
598 _object_types.append("GridClosePairsFinder")
599 
600 
601 def _object_cast_to_GridClosePairsFinder(o):
602  """_object_cast_to_GridClosePairsFinder(Object o) -> GridClosePairsFinder"""
603  return _IMP_core._object_cast_to_GridClosePairsFinder(o)
604 
605 _object_types.append("Harmonic")
606 
607 
608 def _object_cast_to_Harmonic(o):
609  """_object_cast_to_Harmonic(Object o) -> Harmonic"""
610  return _IMP_core._object_cast_to_Harmonic(o)
611 
612 _object_types.append("HarmonicWell")
613 
614 
615 def _object_cast_to_HarmonicWell(o):
616  """_object_cast_to_HarmonicWell(Object o) -> HarmonicWell"""
617  return _IMP_core._object_cast_to_HarmonicWell(o)
618 
619 _object_types.append("HarmonicLowerBound")
620 
621 
622 def _object_cast_to_HarmonicLowerBound(o):
623  """_object_cast_to_HarmonicLowerBound(Object o) -> HarmonicLowerBound"""
624  return _IMP_core._object_cast_to_HarmonicLowerBound(o)
625 
626 _object_types.append("HarmonicUpperBound")
627 
628 
629 def _object_cast_to_HarmonicUpperBound(o):
630  """_object_cast_to_HarmonicUpperBound(Object o) -> HarmonicUpperBound"""
631  return _IMP_core._object_cast_to_HarmonicUpperBound(o)
632 
633 _object_types.append("HarmonicSphereDistancePairScore")
634 
635 
636 def _object_cast_to_HarmonicSphereDistancePairScore(o):
637  """_object_cast_to_HarmonicSphereDistancePairScore(Object o) -> HarmonicSphereDistancePairScore"""
638  return _IMP_core._object_cast_to_HarmonicSphereDistancePairScore(o)
639 
640 _object_types.append("HarmonicUpperBoundSphereDistancePairScore")
641 
642 
643 def _object_cast_to_HarmonicUpperBoundSphereDistancePairScore(o):
644  """_object_cast_to_HarmonicUpperBoundSphereDistancePairScore(Object o) -> HarmonicUpperBoundSphereDistancePairScore"""
645  return _IMP_core._object_cast_to_HarmonicUpperBoundSphereDistancePairScore(o)
646 
647 _object_types.append("HarmonicUpperBoundSphereDiameterPairScore")
648 
649 
650 def _object_cast_to_HarmonicUpperBoundSphereDiameterPairScore(o):
651  """_object_cast_to_HarmonicUpperBoundSphereDiameterPairScore(Object o) -> HarmonicUpperBoundSphereDiameterPairScore"""
652  return _IMP_core._object_cast_to_HarmonicUpperBoundSphereDiameterPairScore(o)
653 
654 _object_types.append("HarmonicSurfaceDistancePairScore")
655 
656 
657 def _object_cast_to_HarmonicSurfaceDistancePairScore(o):
658  """_object_cast_to_HarmonicSurfaceDistancePairScore(Object o) -> HarmonicSurfaceDistancePairScore"""
659  return _IMP_core._object_cast_to_HarmonicSurfaceDistancePairScore(o)
660 
661 _object_types.append("HarmonicSurfaceHeightPairScore")
662 
663 
664 def _object_cast_to_HarmonicSurfaceHeightPairScore(o):
665  """_object_cast_to_HarmonicSurfaceHeightPairScore(Object o) -> HarmonicSurfaceHeightPairScore"""
666  return _IMP_core._object_cast_to_HarmonicSurfaceHeightPairScore(o)
667 
668 _object_types.append("HarmonicSurfaceDepthPairScore")
669 
670 
671 def _object_cast_to_HarmonicSurfaceDepthPairScore(o):
672  """_object_cast_to_HarmonicSurfaceDepthPairScore(Object o) -> HarmonicSurfaceDepthPairScore"""
673  return _IMP_core._object_cast_to_HarmonicSurfaceDepthPairScore(o)
674 
675 _object_types.append("WeightedSum")
676 
677 
678 def _object_cast_to_WeightedSum(o):
679  """_object_cast_to_WeightedSum(Object o) -> WeightedSum"""
680  return _IMP_core._object_cast_to_WeightedSum(o)
681 
682 _object_types.append("WeightedSumOfExponential")
683 
684 
685 def _object_cast_to_WeightedSumOfExponential(o):
686  """_object_cast_to_WeightedSumOfExponential(Object o) -> WeightedSumOfExponential"""
687  return _IMP_core._object_cast_to_WeightedSumOfExponential(o)
688 
689 _object_types.append("IncrementalScoringFunction")
690 
691 
692 def _object_cast_to_IncrementalScoringFunction(o):
693  """_object_cast_to_IncrementalScoringFunction(Object o) -> IncrementalScoringFunction"""
694  return _IMP_core._object_cast_to_IncrementalScoringFunction(o)
695 
696 _object_types.append("KClosePairsPairScore")
697 
698 
699 def _object_cast_to_KClosePairsPairScore(o):
700  """_object_cast_to_KClosePairsPairScore(Object o) -> KClosePairsPairScore"""
701  return _IMP_core._object_cast_to_KClosePairsPairScore(o)
702 
703 _object_types.append("LeavesRefiner")
704 
705 
706 def _object_cast_to_LeavesRefiner(o):
707  """_object_cast_to_LeavesRefiner(Object o) -> LeavesRefiner"""
708  return _IMP_core._object_cast_to_LeavesRefiner(o)
709 
710 _object_types.append("Linear")
711 
712 
713 def _object_cast_to_Linear(o):
714  """_object_cast_to_Linear(Object o) -> Linear"""
715  return _IMP_core._object_cast_to_Linear(o)
716 
717 _object_types.append("LogNormalMover")
718 
719 
720 def _object_cast_to_LogNormalMover(o):
721  """_object_cast_to_LogNormalMover(Object o) -> LogNormalMover"""
722  return _IMP_core._object_cast_to_LogNormalMover(o)
723 
724 _object_types.append("MCCGSampler")
725 
726 
727 def _object_cast_to_MCCGSampler(o):
728  """_object_cast_to_MCCGSampler(Object o) -> MCCGSampler"""
729  return _IMP_core._object_cast_to_MCCGSampler(o)
730 
731 _object_types.append("MonteCarlo")
732 
733 
734 def _object_cast_to_MonteCarlo(o):
735  """_object_cast_to_MonteCarlo(Object o) -> MonteCarlo"""
736  return _IMP_core._object_cast_to_MonteCarlo(o)
737 
738 _object_types.append("MonteCarloWithLocalOptimization")
739 
740 
741 def _object_cast_to_MonteCarloWithLocalOptimization(o):
742  """_object_cast_to_MonteCarloWithLocalOptimization(Object o) -> MonteCarloWithLocalOptimization"""
743  return _IMP_core._object_cast_to_MonteCarloWithLocalOptimization(o)
744 
745 _object_types.append("MonteCarloWithBasinHopping")
746 
747 
748 def _object_cast_to_MonteCarloWithBasinHopping(o):
749  """_object_cast_to_MonteCarloWithBasinHopping(Object o) -> MonteCarloWithBasinHopping"""
750  return _IMP_core._object_cast_to_MonteCarloWithBasinHopping(o)
751 
752 _object_types.append("MSConnectivityRestraint")
753 
754 
755 def _object_cast_to_MSConnectivityRestraint(o):
756  """_object_cast_to_MSConnectivityRestraint(Object o) -> MSConnectivityRestraint"""
757  return _IMP_core._object_cast_to_MSConnectivityRestraint(o)
758 
759 _object_types.append("NeighborsTable")
760 
761 
762 def _object_cast_to_NeighborsTable(o):
763  """_object_cast_to_NeighborsTable(Object o) -> NeighborsTable"""
764  return _IMP_core._object_cast_to_NeighborsTable(o)
765 
766 _object_types.append("NormalMover")
767 
768 
769 def _object_cast_to_NormalMover(o):
770  """_object_cast_to_NormalMover(Object o) -> NormalMover"""
771  return _IMP_core._object_cast_to_NormalMover(o)
772 
773 _object_types.append("NormalizedSphereDistancePairScore")
774 
775 
776 def _object_cast_to_NormalizedSphereDistancePairScore(o):
777  """_object_cast_to_NormalizedSphereDistancePairScore(Object o) -> NormalizedSphereDistancePairScore"""
778  return _IMP_core._object_cast_to_NormalizedSphereDistancePairScore(o)
779 
780 _object_types.append("OpenCubicSpline")
781 
782 
783 def _object_cast_to_OpenCubicSpline(o):
784  """_object_cast_to_OpenCubicSpline(Object o) -> OpenCubicSpline"""
785  return _IMP_core._object_cast_to_OpenCubicSpline(o)
786 
787 _object_types.append("PairConstraint")
788 
789 
790 def _object_cast_to_PairConstraint(o):
791  """_object_cast_to_PairConstraint(Object o) -> PairConstraint"""
792  return _IMP_core._object_cast_to_PairConstraint(o)
793 
794 _object_types.append("PairRestraint")
795 
796 
797 def _object_cast_to_PairRestraint(o):
798  """_object_cast_to_PairRestraint(Object o) -> PairRestraint"""
799  return _IMP_core._object_cast_to_PairRestraint(o)
800 
801 _object_types.append("QuadConstraint")
802 
803 
804 def _object_cast_to_QuadConstraint(o):
805  """_object_cast_to_QuadConstraint(Object o) -> QuadConstraint"""
806  return _IMP_core._object_cast_to_QuadConstraint(o)
807 
808 _object_types.append("QuadRestraint")
809 
810 
811 def _object_cast_to_QuadRestraint(o):
812  """_object_cast_to_QuadRestraint(Object o) -> QuadRestraint"""
813  return _IMP_core._object_cast_to_QuadRestraint(o)
814 
815 _object_types.append("QuadraticClosePairsFinder")
816 
817 
818 def _object_cast_to_QuadraticClosePairsFinder(o):
819  """_object_cast_to_QuadraticClosePairsFinder(Object o) -> QuadraticClosePairsFinder"""
820  return _IMP_core._object_cast_to_QuadraticClosePairsFinder(o)
821 
822 _object_types.append("RefinedPairsPairScore")
823 
824 
825 def _object_cast_to_RefinedPairsPairScore(o):
826  """_object_cast_to_RefinedPairsPairScore(Object o) -> RefinedPairsPairScore"""
827  return _IMP_core._object_cast_to_RefinedPairsPairScore(o)
828 
829 _object_types.append("RestraintsScoringFunction")
830 
831 
832 def _object_cast_to_RestraintsScoringFunction(o):
833  """_object_cast_to_RestraintsScoringFunction(Object o) -> RestraintsScoringFunction"""
834  return _IMP_core._object_cast_to_RestraintsScoringFunction(o)
835 
836 _object_types.append("RigidBodyDistancePairScore")
837 
838 
839 def _object_cast_to_RigidBodyDistancePairScore(o):
840  """_object_cast_to_RigidBodyDistancePairScore(Object o) -> RigidBodyDistancePairScore"""
841  return _IMP_core._object_cast_to_RigidBodyDistancePairScore(o)
842 
843 _object_types.append("RigidBodyAnglePairScore")
844 
845 
846 def _object_cast_to_RigidBodyAnglePairScore(o):
847  """_object_cast_to_RigidBodyAnglePairScore(Object o) -> RigidBodyAnglePairScore"""
848  return _IMP_core._object_cast_to_RigidBodyAnglePairScore(o)
849 
850 _object_types.append("RigidBodyMover")
851 
852 
853 def _object_cast_to_RigidBodyMover(o):
854  """_object_cast_to_RigidBodyMover(Object o) -> RigidBodyMover"""
855  return _IMP_core._object_cast_to_RigidBodyMover(o)
856 
857 _object_types.append("RigidBodyTunneler")
858 
859 
860 def _object_cast_to_RigidBodyTunneler(o):
861  """_object_cast_to_RigidBodyTunneler(Object o) -> RigidBodyTunneler"""
862  return _IMP_core._object_cast_to_RigidBodyTunneler(o)
863 
864 _object_types.append("RigidBodyUmbrella")
865 
866 
867 def _object_cast_to_RigidBodyUmbrella(o):
868  """_object_cast_to_RigidBodyUmbrella(Object o) -> RigidBodyUmbrella"""
869  return _IMP_core._object_cast_to_RigidBodyUmbrella(o)
870 
871 _object_types.append("RigidClosePairsFinder")
872 
873 
874 def _object_cast_to_RigidClosePairsFinder(o):
875  """_object_cast_to_RigidClosePairsFinder(Object o) -> RigidClosePairsFinder"""
876  return _IMP_core._object_cast_to_RigidClosePairsFinder(o)
877 
878 _object_types.append("RigidMembersRefiner")
879 
880 
881 def _object_cast_to_RigidMembersRefiner(o):
882  """_object_cast_to_RigidMembersRefiner(Object o) -> RigidMembersRefiner"""
883  return _IMP_core._object_cast_to_RigidMembersRefiner(o)
884 
885 _object_types.append("SingletonConstraint")
886 
887 
888 def _object_cast_to_SingletonConstraint(o):
889  """_object_cast_to_SingletonConstraint(Object o) -> SingletonConstraint"""
890  return _IMP_core._object_cast_to_SingletonConstraint(o)
891 
892 _object_types.append("SingletonRestraint")
893 
894 
895 def _object_cast_to_SingletonRestraint(o):
896  """_object_cast_to_SingletonRestraint(Object o) -> SingletonRestraint"""
897  return _IMP_core._object_cast_to_SingletonRestraint(o)
898 
899 _object_types.append("SoftSpherePairScore")
900 
901 
902 def _object_cast_to_SoftSpherePairScore(o):
903  """_object_cast_to_SoftSpherePairScore(Object o) -> SoftSpherePairScore"""
904  return _IMP_core._object_cast_to_SoftSpherePairScore(o)
905 
906 _object_types.append("SphereDistancePairScore")
907 
908 
909 def _object_cast_to_SphereDistancePairScore(o):
910  """_object_cast_to_SphereDistancePairScore(Object o) -> SphereDistancePairScore"""
911  return _IMP_core._object_cast_to_SphereDistancePairScore(o)
912 
913 _object_types.append("SphereDistanceToSingletonScore")
914 
915 
916 def _object_cast_to_SphereDistanceToSingletonScore(o):
917  """_object_cast_to_SphereDistanceToSingletonScore(Object o) -> SphereDistanceToSingletonScore"""
918  return _IMP_core._object_cast_to_SphereDistanceToSingletonScore(o)
919 
920 _object_types.append("SoftSubSurfacePairScore")
921 
922 
923 def _object_cast_to_SoftSubSurfacePairScore(o):
924  """_object_cast_to_SoftSubSurfacePairScore(Object o) -> SoftSubSurfacePairScore"""
925  return _IMP_core._object_cast_to_SoftSubSurfacePairScore(o)
926 
927 _object_types.append("SoftSuperSurfacePairScore")
928 
929 
930 def _object_cast_to_SoftSuperSurfacePairScore(o):
931  """_object_cast_to_SoftSuperSurfacePairScore(Object o) -> SoftSuperSurfacePairScore"""
932  return _IMP_core._object_cast_to_SoftSuperSurfacePairScore(o)
933 
934 _object_types.append("SurfaceDistancePairScore")
935 
936 
937 def _object_cast_to_SurfaceDistancePairScore(o):
938  """_object_cast_to_SurfaceDistancePairScore(Object o) -> SurfaceDistancePairScore"""
939  return _IMP_core._object_cast_to_SurfaceDistancePairScore(o)
940 
941 _object_types.append("SurfaceHeightPairScore")
942 
943 
944 def _object_cast_to_SurfaceHeightPairScore(o):
945  """_object_cast_to_SurfaceHeightPairScore(Object o) -> SurfaceHeightPairScore"""
946  return _IMP_core._object_cast_to_SurfaceHeightPairScore(o)
947 
948 _object_types.append("SurfaceDepthPairScore")
949 
950 
951 def _object_cast_to_SurfaceDepthPairScore(o):
952  """_object_cast_to_SurfaceDepthPairScore(Object o) -> SurfaceDepthPairScore"""
953  return _IMP_core._object_cast_to_SurfaceDepthPairScore(o)
954 
955 _object_types.append("SurfaceTetheredChain")
956 
957 
958 def _object_cast_to_SurfaceTetheredChain(o):
959  """_object_cast_to_SurfaceTetheredChain(Object o) -> SurfaceTetheredChain"""
960  return _IMP_core._object_cast_to_SurfaceTetheredChain(o)
961 
962 _object_types.append("SurfaceSymmetryConstraint")
963 
964 
965 def _object_cast_to_SurfaceSymmetryConstraint(o):
966  """_object_cast_to_SurfaceSymmetryConstraint(Object o) -> SurfaceSymmetryConstraint"""
967  return _IMP_core._object_cast_to_SurfaceSymmetryConstraint(o)
968 
969 _object_types.append("SteepestDescent")
970 
971 
972 def _object_cast_to_SteepestDescent(o):
973  """_object_cast_to_SteepestDescent(Object o) -> SteepestDescent"""
974  return _IMP_core._object_cast_to_SteepestDescent(o)
975 
976 _object_types.append("TableRefiner")
977 
978 
979 def _object_cast_to_TableRefiner(o):
980  """_object_cast_to_TableRefiner(Object o) -> TableRefiner"""
981  return _IMP_core._object_cast_to_TableRefiner(o)
982 
983 _object_types.append("Transform")
984 
985 
986 def _object_cast_to_Transform(o):
987  """_object_cast_to_Transform(Object o) -> Transform"""
988  return _IMP_core._object_cast_to_Transform(o)
989 
990 _object_types.append("TransformationAndReflectionSymmetry")
991 
992 
993 def _object_cast_to_TransformationAndReflectionSymmetry(o):
994  """_object_cast_to_TransformationAndReflectionSymmetry(Object o) -> TransformationAndReflectionSymmetry"""
995  return _IMP_core._object_cast_to_TransformationAndReflectionSymmetry(o)
996 
997 _object_types.append("TransformationSymmetry")
998 
999 
1000 def _object_cast_to_TransformationSymmetry(o):
1001  """_object_cast_to_TransformationSymmetry(Object o) -> TransformationSymmetry"""
1002  return _IMP_core._object_cast_to_TransformationSymmetry(o)
1003 
1004 _object_types.append("TransformationSymmetryMover")
1005 
1006 
1007 def _object_cast_to_TransformationSymmetryMover(o):
1008  """_object_cast_to_TransformationSymmetryMover(Object o) -> TransformationSymmetryMover"""
1009  return _IMP_core._object_cast_to_TransformationSymmetryMover(o)
1010 
1011 _object_types.append("TransformedDistancePairScore")
1012 
1013 
1014 def _object_cast_to_TransformedDistancePairScore(o):
1015  """_object_cast_to_TransformedDistancePairScore(Object o) -> TransformedDistancePairScore"""
1016  return _IMP_core._object_cast_to_TransformedDistancePairScore(o)
1017 
1018 _object_types.append("TripletConstraint")
1019 
1020 
1021 def _object_cast_to_TripletConstraint(o):
1022  """_object_cast_to_TripletConstraint(Object o) -> TripletConstraint"""
1023  return _IMP_core._object_cast_to_TripletConstraint(o)
1024 
1025 _object_types.append("TripletRestraint")
1026 
1027 
1028 def _object_cast_to_TripletRestraint(o):
1029  """_object_cast_to_TripletRestraint(Object o) -> TripletRestraint"""
1030  return _IMP_core._object_cast_to_TripletRestraint(o)
1031 
1032 _object_types.append("TypedPairScore")
1033 
1034 
1035 def _object_cast_to_TypedPairScore(o):
1036  """_object_cast_to_TypedPairScore(Object o) -> TypedPairScore"""
1037  return _IMP_core._object_cast_to_TypedPairScore(o)
1038 
1039 _object_types.append("VolumeRestraint")
1040 
1041 
1042 def _object_cast_to_VolumeRestraint(o):
1043  """_object_cast_to_VolumeRestraint(Object o) -> VolumeRestraint"""
1044  return _IMP_core._object_cast_to_VolumeRestraint(o)
1045 
1046 _object_types.append("WeightedSphereDistancePairScore")
1047 
1048 
1049 def _object_cast_to_WeightedSphereDistancePairScore(o):
1050  """_object_cast_to_WeightedSphereDistancePairScore(Object o) -> WeightedSphereDistancePairScore"""
1051  return _IMP_core._object_cast_to_WeightedSphereDistancePairScore(o)
1052 
1053 _object_types.append("MoveStatisticsScoreState")
1054 
1055 
1056 def _object_cast_to_MoveStatisticsScoreState(o):
1057  """_object_cast_to_MoveStatisticsScoreState(Object o) -> MoveStatisticsScoreState"""
1058  return _IMP_core._object_cast_to_MoveStatisticsScoreState(o)
1059 
1060 _object_types.append("MinimumRestraint")
1061 
1062 
1063 def _object_cast_to_MinimumRestraint(o):
1064  """_object_cast_to_MinimumRestraint(Object o) -> MinimumRestraint"""
1065  return _IMP_core._object_cast_to_MinimumRestraint(o)
1066 
1067 _object_types.append("WriteRestraintScoresOptimizerState")
1068 
1069 
1070 def _object_cast_to_WriteRestraintScoresOptimizerState(o):
1071  """_object_cast_to_WriteRestraintScoresOptimizerState(Object o) -> WriteRestraintScoresOptimizerState"""
1072  return _IMP_core._object_cast_to_WriteRestraintScoresOptimizerState(o)
1073 
1074 _object_types.append("LateralSurfaceConstraint")
1075 
1076 
1077 def _object_cast_to_LateralSurfaceConstraint(o):
1078  """_object_cast_to_LateralSurfaceConstraint(Object o) -> LateralSurfaceConstraint"""
1079  return _IMP_core._object_cast_to_LateralSurfaceConstraint(o)
1080 
1081 _object_types.append("ConstantSingletonPredicate")
1082 
1083 
1084 def _object_cast_to_ConstantSingletonPredicate(o):
1085  """_object_cast_to_ConstantSingletonPredicate(Object o) -> ConstantSingletonPredicate"""
1086  return _IMP_core._object_cast_to_ConstantSingletonPredicate(o)
1087 
1088 _object_types.append("ConstantPairPredicate")
1089 
1090 
1091 def _object_cast_to_ConstantPairPredicate(o):
1092  """_object_cast_to_ConstantPairPredicate(Object o) -> ConstantPairPredicate"""
1093  return _IMP_core._object_cast_to_ConstantPairPredicate(o)
1094 
1095 _object_types.append("ConstantTripletPredicate")
1096 
1097 
1098 def _object_cast_to_ConstantTripletPredicate(o):
1099  """_object_cast_to_ConstantTripletPredicate(Object o) -> ConstantTripletPredicate"""
1100  return _IMP_core._object_cast_to_ConstantTripletPredicate(o)
1101 
1102 _object_types.append("ConstantQuadPredicate")
1103 
1104 
1105 def _object_cast_to_ConstantQuadPredicate(o):
1106  """_object_cast_to_ConstantQuadPredicate(Object o) -> ConstantQuadPredicate"""
1107  return _IMP_core._object_cast_to_ConstantQuadPredicate(o)
1108 
1109 _object_types.append("CoinFlipSingletonPredicate")
1110 
1111 
1112 def _object_cast_to_CoinFlipSingletonPredicate(o):
1113  """_object_cast_to_CoinFlipSingletonPredicate(Object o) -> CoinFlipSingletonPredicate"""
1114  return _IMP_core._object_cast_to_CoinFlipSingletonPredicate(o)
1115 
1116 _object_types.append("CoinFlipPairPredicate")
1117 
1118 
1119 def _object_cast_to_CoinFlipPairPredicate(o):
1120  """_object_cast_to_CoinFlipPairPredicate(Object o) -> CoinFlipPairPredicate"""
1121  return _IMP_core._object_cast_to_CoinFlipPairPredicate(o)
1122 
1123 _object_types.append("CoinFlipTripletPredicate")
1124 
1125 
1126 def _object_cast_to_CoinFlipTripletPredicate(o):
1127  """_object_cast_to_CoinFlipTripletPredicate(Object o) -> CoinFlipTripletPredicate"""
1128  return _IMP_core._object_cast_to_CoinFlipTripletPredicate(o)
1129 
1130 _object_types.append("CoinFlipQuadPredicate")
1131 
1132 
1133 def _object_cast_to_CoinFlipQuadPredicate(o):
1134  """_object_cast_to_CoinFlipQuadPredicate(Object o) -> CoinFlipQuadPredicate"""
1135  return _IMP_core._object_cast_to_CoinFlipQuadPredicate(o)
1136 
1137 _object_types.append("UnorderedTypeSingletonPredicate")
1138 
1139 
1140 def _object_cast_to_UnorderedTypeSingletonPredicate(o):
1141  """_object_cast_to_UnorderedTypeSingletonPredicate(Object o) -> UnorderedTypeSingletonPredicate"""
1142  return _IMP_core._object_cast_to_UnorderedTypeSingletonPredicate(o)
1143 
1144 _object_types.append("UnorderedTypePairPredicate")
1145 
1146 
1147 def _object_cast_to_UnorderedTypePairPredicate(o):
1148  """_object_cast_to_UnorderedTypePairPredicate(Object o) -> UnorderedTypePairPredicate"""
1149  return _IMP_core._object_cast_to_UnorderedTypePairPredicate(o)
1150 
1151 _object_types.append("UnorderedTypeTripletPredicate")
1152 
1153 
1154 def _object_cast_to_UnorderedTypeTripletPredicate(o):
1155  """_object_cast_to_UnorderedTypeTripletPredicate(Object o) -> UnorderedTypeTripletPredicate"""
1156  return _IMP_core._object_cast_to_UnorderedTypeTripletPredicate(o)
1157 
1158 _object_types.append("UnorderedTypeQuadPredicate")
1159 
1160 
1161 def _object_cast_to_UnorderedTypeQuadPredicate(o):
1162  """_object_cast_to_UnorderedTypeQuadPredicate(Object o) -> UnorderedTypeQuadPredicate"""
1163  return _IMP_core._object_cast_to_UnorderedTypeQuadPredicate(o)
1164 
1165 _object_types.append("OrderedTypeSingletonPredicate")
1166 
1167 
1168 def _object_cast_to_OrderedTypeSingletonPredicate(o):
1169  """_object_cast_to_OrderedTypeSingletonPredicate(Object o) -> OrderedTypeSingletonPredicate"""
1170  return _IMP_core._object_cast_to_OrderedTypeSingletonPredicate(o)
1171 
1172 _object_types.append("OrderedTypePairPredicate")
1173 
1174 
1175 def _object_cast_to_OrderedTypePairPredicate(o):
1176  """_object_cast_to_OrderedTypePairPredicate(Object o) -> OrderedTypePairPredicate"""
1177  return _IMP_core._object_cast_to_OrderedTypePairPredicate(o)
1178 
1179 _object_types.append("OrderedTypeTripletPredicate")
1180 
1181 
1182 def _object_cast_to_OrderedTypeTripletPredicate(o):
1183  """_object_cast_to_OrderedTypeTripletPredicate(Object o) -> OrderedTypeTripletPredicate"""
1184  return _IMP_core._object_cast_to_OrderedTypeTripletPredicate(o)
1185 
1186 _object_types.append("OrderedTypeQuadPredicate")
1187 
1188 
1189 def _object_cast_to_OrderedTypeQuadPredicate(o):
1190  """_object_cast_to_OrderedTypeQuadPredicate(Object o) -> OrderedTypeQuadPredicate"""
1191  return _IMP_core._object_cast_to_OrderedTypeQuadPredicate(o)
1192 
1193 _object_types.append("AllSameSingletonPredicate")
1194 
1195 
1196 def _object_cast_to_AllSameSingletonPredicate(o):
1197  """_object_cast_to_AllSameSingletonPredicate(Object o) -> AllSameSingletonPredicate"""
1198  return _IMP_core._object_cast_to_AllSameSingletonPredicate(o)
1199 
1200 _object_types.append("AllSamePairPredicate")
1201 
1202 
1203 def _object_cast_to_AllSamePairPredicate(o):
1204  """_object_cast_to_AllSamePairPredicate(Object o) -> AllSamePairPredicate"""
1205  return _IMP_core._object_cast_to_AllSamePairPredicate(o)
1206 
1207 _object_types.append("AllSameTripletPredicate")
1208 
1209 
1210 def _object_cast_to_AllSameTripletPredicate(o):
1211  """_object_cast_to_AllSameTripletPredicate(Object o) -> AllSameTripletPredicate"""
1212  return _IMP_core._object_cast_to_AllSameTripletPredicate(o)
1213 
1214 _object_types.append("AllSameQuadPredicate")
1215 
1216 
1217 def _object_cast_to_AllSameQuadPredicate(o):
1218  """_object_cast_to_AllSameQuadPredicate(Object o) -> AllSameQuadPredicate"""
1219  return _IMP_core._object_cast_to_AllSameQuadPredicate(o)
1220 
1221 def XYZs(l=[]):
1222  return [XYZ(x) for x in l]
1223 _plural_types.append("XYZs")
1224 
1225 
1226 _value_types.append("XYZ")
1227 
1228 
1229 def XYZRs(l=[]):
1230  return [XYZR(x) for x in l]
1231 _plural_types.append("XYZRs")
1232 
1233 
1234 _value_types.append("XYZR")
1235 
1236 
1237 def RigidBodies(l=[]):
1238  return [RigidBody(x) for x in l]
1239 _plural_types.append("RigidBodies")
1240 
1241 
1242 _value_types.append("RigidBody")
1243 
1244 
1245 def RigidBodyMembers(l=[]):
1246  return [RigidBodyMember(x) for x in l]
1247 _plural_types.append("RigidBodyMembers")
1248 
1249 
1250 _value_types.append("RigidBodyMember")
1251 
1252 
1253 def RigidMembers(l=[]):
1254  return [RigidMember(x) for x in l]
1255 _plural_types.append("RigidMembers")
1256 
1257 
1258 _value_types.append("RigidMember")
1259 
1260 
1261 def NonRigidMembers(l=[]):
1262  return [NonRigidMember(x) for x in l]
1263 _plural_types.append("NonRigidMembers")
1264 
1265 
1266 _value_types.append("NonRigidMember")
1267 
1268 
1269 def Centroids(l=[]):
1270  return [Centroid(x) for x in l]
1271 _plural_types.append("Centroids")
1272 
1273 
1274 _value_types.append("Centroid")
1275 
1276 
1277 def Covers(l=[]):
1278  return [Cover(x) for x in l]
1279 _plural_types.append("Covers")
1280 
1281 
1282 _value_types.append("Cover")
1283 
1284 
1285 def References(l=[]):
1286  return [Reference(x) for x in l]
1287 _plural_types.append("References")
1288 
1289 
1290 _value_types.append("Reference")
1291 
1292 
1293 ParticleTypes=list
1294 _plural_types.append("ParticleTypes")
1295 _value_types.append("ParticleType")
1296 
1297 
1298 def Typeds(l=[]):
1299  return [Typed(x) for x in l]
1300 _plural_types.append("Typeds")
1301 
1302 
1303 _value_types.append("Typed")
1304 
1305 
1306 def GenericHierarchies(l=[]):
1307  return [Hierarchy(x) for x in l]
1308 _plural_types.append("GenericHierarchies")
1309 
1310 
1311 _value_types.append("Hierarchy")
1312 
1313 
1314 def Gaussians(l=[]):
1315  return [Gaussian(x) for x in l]
1316 _plural_types.append("Gaussians")
1317 
1318 
1319 _value_types.append("Gaussian")
1320 
1321 
1322 def Directions(l=[]):
1323  return [Direction(x) for x in l]
1324 _plural_types.append("Directions")
1325 
1326 
1327 _value_types.append("Direction")
1328 
1329 
1330 def DirectionAngles(l=[]):
1331  return [DirectionAngle(x) for x in l]
1332 _plural_types.append("DirectionAngles")
1333 
1334 
1335 _value_types.append("DirectionAngle")
1336 
1337 
1338 def Surfaces(l=[]):
1339  return [Surface(x) for x in l]
1340 _plural_types.append("Surfaces")
1341 
1342 
1343 _value_types.append("Surface")
1344 
1345 
1346 def Provenances(l=[]):
1347  return [Provenance(x) for x in l]
1348 _plural_types.append("Provenances")
1349 
1350 
1351 _value_types.append("Provenance")
1352 
1353 
1354 def StructureProvenances(l=[]):
1355  return [StructureProvenance(x) for x in l]
1356 _plural_types.append("StructureProvenances")
1357 
1358 
1359 _value_types.append("StructureProvenance")
1360 
1361 
1362 def SampleProvenances(l=[]):
1363  return [SampleProvenance(x) for x in l]
1364 _plural_types.append("SampleProvenances")
1365 
1366 
1367 _value_types.append("SampleProvenance")
1368 
1369 
1370 def ClusterProvenances(l=[]):
1371  return [ClusterProvenance(x) for x in l]
1372 _plural_types.append("ClusterProvenances")
1373 
1374 
1375 _value_types.append("ClusterProvenance")
1376 
1377 
1378 def CombineProvenances(l=[]):
1379  return [CombineProvenance(x) for x in l]
1380 _plural_types.append("CombineProvenances")
1381 
1382 
1383 _value_types.append("CombineProvenance")
1384 
1385 
1386 def FilterProvenances(l=[]):
1387  return [FilterProvenance(x) for x in l]
1388 _plural_types.append("FilterProvenances")
1389 
1390 
1391 _value_types.append("FilterProvenance")
1392 
1393 
1394 def ScriptProvenances(l=[]):
1395  return [ScriptProvenance(x) for x in l]
1396 _plural_types.append("ScriptProvenances")
1397 
1398 
1399 _value_types.append("ScriptProvenance")
1400 
1401 
1402 def SoftwareProvenances(l=[]):
1403  return [SoftwareProvenance(x) for x in l]
1404 _plural_types.append("SoftwareProvenances")
1405 
1406 
1407 _value_types.append("SoftwareProvenance")
1408 
1409 
1410 def Provenanceds(l=[]):
1411  return [Provenanced(x) for x in l]
1412 _plural_types.append("Provenanceds")
1413 
1414 
1415 _value_types.append("Provenanced")
1416 
1417 
1418 HierarchyCounters=list
1419 _plural_types.append("HierarchyCounters")
1420 _value_types.append("HierarchyCounter")
1421 
1422 
1423 HierarchyTraitsList=list
1424 _plural_types.append("HierarchyTraitsList")
1425 _value_types.append("HierarchyTraits")
1426 
1427 
1428 _object_types.append("TruncatedHarmonicBound")
1429 
1430 
1431 def _object_cast_to_TruncatedHarmonicBound(o):
1432  """_object_cast_to_TruncatedHarmonicBound(Object o) -> TruncatedHarmonicBound"""
1433  return _IMP_core._object_cast_to_TruncatedHarmonicBound(o)
1434 
1435 _object_types.append("TruncatedHarmonicLowerBound")
1436 
1437 
1438 def _object_cast_to_TruncatedHarmonicLowerBound(o):
1439  """_object_cast_to_TruncatedHarmonicLowerBound(Object o) -> TruncatedHarmonicLowerBound"""
1440  return _IMP_core._object_cast_to_TruncatedHarmonicLowerBound(o)
1441 
1442 _object_types.append("TruncatedHarmonicUpperBound")
1443 
1444 
1445 def _object_cast_to_TruncatedHarmonicUpperBound(o):
1446  """_object_cast_to_TruncatedHarmonicUpperBound(Object o) -> TruncatedHarmonicUpperBound"""
1447  return _IMP_core._object_cast_to_TruncatedHarmonicUpperBound(o)
1448 
1449 _object_types.append("HarmonicDistancePairScore")
1450 
1451 
1452 def _object_cast_to_HarmonicDistancePairScore(o):
1453  """_object_cast_to_HarmonicDistancePairScore(Object o) -> HarmonicDistancePairScore"""
1454  return _IMP_core._object_cast_to_HarmonicDistancePairScore(o)
1455 
1456 _object_types.append("DistancePairScore")
1457 
1458 
1459 def _object_cast_to_DistancePairScore(o):
1460  """_object_cast_to_DistancePairScore(Object o) -> DistancePairScore"""
1461  return _IMP_core._object_cast_to_DistancePairScore(o)
1462 
1463 _object_types.append("XYZRGeometry")
1464 
1465 
1466 def _object_cast_to_XYZRGeometry(o):
1467  """_object_cast_to_XYZRGeometry(Object o) -> XYZRGeometry"""
1468  return _IMP_core._object_cast_to_XYZRGeometry(o)
1469 
1470 _object_types.append("XYZRsGeometry")
1471 
1472 
1473 def _object_cast_to_XYZRsGeometry(o):
1474  """_object_cast_to_XYZRsGeometry(Object o) -> XYZRsGeometry"""
1475  return _IMP_core._object_cast_to_XYZRsGeometry(o)
1476 
1477 _object_types.append("XYZDerivativeGeometry")
1478 
1479 
1480 def _object_cast_to_XYZDerivativeGeometry(o):
1481  """_object_cast_to_XYZDerivativeGeometry(Object o) -> XYZDerivativeGeometry"""
1482  return _IMP_core._object_cast_to_XYZDerivativeGeometry(o)
1483 
1484 _object_types.append("XYZDerivativesGeometry")
1485 
1486 
1487 def _object_cast_to_XYZDerivativesGeometry(o):
1488  """_object_cast_to_XYZDerivativesGeometry(Object o) -> XYZDerivativesGeometry"""
1489  return _IMP_core._object_cast_to_XYZDerivativesGeometry(o)
1490 
1491 _object_types.append("RigidBodyDerivativeGeometry")
1492 
1493 
1494 def _object_cast_to_RigidBodyDerivativeGeometry(o):
1495  """_object_cast_to_RigidBodyDerivativeGeometry(Object o) -> RigidBodyDerivativeGeometry"""
1496  return _IMP_core._object_cast_to_RigidBodyDerivativeGeometry(o)
1497 
1498 _object_types.append("RigidBodyDerivativesGeometry")
1499 
1500 
1501 def _object_cast_to_RigidBodyDerivativesGeometry(o):
1502  """_object_cast_to_RigidBodyDerivativesGeometry(Object o) -> RigidBodyDerivativesGeometry"""
1503  return _IMP_core._object_cast_to_RigidBodyDerivativesGeometry(o)
1504 
1505 _object_types.append("RigidBodyHierarchyGeometry")
1506 
1507 
1508 def _object_cast_to_RigidBodyHierarchyGeometry(o):
1509  """_object_cast_to_RigidBodyHierarchyGeometry(Object o) -> RigidBodyHierarchyGeometry"""
1510  return _IMP_core._object_cast_to_RigidBodyHierarchyGeometry(o)
1511 
1512 _object_types.append("RigidBodyFrameGeometry")
1513 
1514 
1515 def _object_cast_to_RigidBodyFrameGeometry(o):
1516  """_object_cast_to_RigidBodyFrameGeometry(Object o) -> RigidBodyFrameGeometry"""
1517  return _IMP_core._object_cast_to_RigidBodyFrameGeometry(o)
1518 
1519 _object_types.append("RigidBodyFramesGeometry")
1520 
1521 
1522 def _object_cast_to_RigidBodyFramesGeometry(o):
1523  """_object_cast_to_RigidBodyFramesGeometry(Object o) -> RigidBodyFramesGeometry"""
1524  return _IMP_core._object_cast_to_RigidBodyFramesGeometry(o)
1525 
1526 _object_types.append("RigidBodyTorque")
1527 
1528 
1529 def _object_cast_to_RigidBodyTorque(o):
1530  """_object_cast_to_RigidBodyTorque(Object o) -> RigidBodyTorque"""
1531  return _IMP_core._object_cast_to_RigidBodyTorque(o)
1532 
1533 _object_types.append("EdgePairGeometry")
1534 
1535 
1536 def _object_cast_to_EdgePairGeometry(o):
1537  """_object_cast_to_EdgePairGeometry(Object o) -> EdgePairGeometry"""
1538  return _IMP_core._object_cast_to_EdgePairGeometry(o)
1539 
1540 _object_types.append("EdgePairsGeometry")
1541 
1542 
1543 def _object_cast_to_EdgePairsGeometry(o):
1544  """_object_cast_to_EdgePairsGeometry(Object o) -> EdgePairsGeometry"""
1545  return _IMP_core._object_cast_to_EdgePairsGeometry(o)
1546 
1547 _object_types.append("SurfaceGeometry")
1548 
1549 
1550 def _object_cast_to_SurfaceGeometry(o):
1551  """_object_cast_to_SurfaceGeometry(Object o) -> SurfaceGeometry"""
1552  return _IMP_core._object_cast_to_SurfaceGeometry(o)
1553 
1554 _object_types.append("SurfaceGeometryConstraint")
1555 
1556 
1557 def _object_cast_to_SurfaceGeometryConstraint(o):
1558  """_object_cast_to_SurfaceGeometryConstraint(Object o) -> SurfaceGeometryConstraint"""
1559  return _IMP_core._object_cast_to_SurfaceGeometryConstraint(o)
1560 
1561 _object_types.append("AttributeSingletonPredicate")
1562 
1563 
1564 def _object_cast_to_AttributeSingletonPredicate(o):
1565  """_object_cast_to_AttributeSingletonPredicate(Object o) -> AttributeSingletonPredicate"""
1566  return _IMP_core._object_cast_to_AttributeSingletonPredicate(o)
1567 
1568 _object_types.append("InBoundingBox3DSingletonPredicate")
1569 
1570 
1571 def _object_cast_to_InBoundingBox3DSingletonPredicate(o):
1572  """_object_cast_to_InBoundingBox3DSingletonPredicate(Object o) -> InBoundingBox3DSingletonPredicate"""
1573  return _IMP_core._object_cast_to_InBoundingBox3DSingletonPredicate(o)
1574 
1575 _object_types.append("IsCollisionPairPredicate")
1576 
1577 
1578 def _object_cast_to_IsCollisionPairPredicate(o):
1579  """_object_cast_to_IsCollisionPairPredicate(Object o) -> IsCollisionPairPredicate"""
1580  return _IMP_core._object_cast_to_IsCollisionPairPredicate(o)
1581 
1582 BinormalTermList=list
1583 _plural_types.append("BinormalTermList")
1584 _value_types.append("BinormalTerm")
1585 
1586 
1587 _object_types.append("MultipleBinormalRestraint")
1588 
1589 
1590 def _object_cast_to_MultipleBinormalRestraint(o):
1591  """_object_cast_to_MultipleBinormalRestraint(Object o) -> MultipleBinormalRestraint"""
1592  return _IMP_core._object_cast_to_MultipleBinormalRestraint(o)
1593 class ClosePairsFinder(IMP._ParticleInputs, IMP.Object):
1594  """Proxy of C++ IMP::core::ClosePairsFinder class."""
1595 
1596  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1597 
1598  def __init__(self, *args, **kwargs):
1599  raise AttributeError("No constructor defined - class is abstract")
1600  __swig_destroy__ = _IMP_core.delete_ClosePairsFinder
1601  __del__ = lambda self: None
1602 
1603  def get_close_pairs(self, *args):
1604  """
1605  get_close_pairs(ClosePairsFinder self, Model m, IMP::ParticleIndexes const & pc) -> IMP::ParticleIndexPairs
1606  get_close_pairs(ClosePairsFinder self, Model m, IMP::ParticleIndexes const & pca, IMP::ParticleIndexes const & pcb) -> IMP::ParticleIndexPairs
1607  get_close_pairs(ClosePairsFinder self, IMP::algebra::BoundingBox3Ds const & bbs) -> IMP::IntPairs
1608  get_close_pairs(ClosePairsFinder self, IMP::algebra::BoundingBox3Ds const & bas, IMP::algebra::BoundingBox3Ds const & bbs) -> IMP::IntPairs
1609  """
1610  return _IMP_core.ClosePairsFinder_get_close_pairs(self, *args)
1611 
1612 
1613  def set_distance(self, d):
1614  """set_distance(ClosePairsFinder self, double d)"""
1615  return _IMP_core.ClosePairsFinder_set_distance(self, d)
1616 
1617 
1618  def get_distance(self):
1619  """get_distance(ClosePairsFinder self) -> double"""
1620  return _IMP_core.ClosePairsFinder_get_distance(self)
1621 
1622 
1623  def remove_pair_filter(self, d):
1624  """remove_pair_filter(ClosePairsFinder self, PairPredicate d)"""
1625  return _IMP_core.ClosePairsFinder_remove_pair_filter(self, d)
1626 
1627 
1628  def remove_pair_filters(self, d):
1629  """remove_pair_filters(ClosePairsFinder self, IMP::PairPredicates const & d)"""
1630  return _IMP_core.ClosePairsFinder_remove_pair_filters(self, d)
1631 
1632 
1633  def set_pair_filters(self, ps):
1634  """set_pair_filters(ClosePairsFinder self, IMP::PairPredicates const & ps)"""
1635  return _IMP_core.ClosePairsFinder_set_pair_filters(self, ps)
1636 
1637 
1638  def set_pair_filters_order(self, objs):
1639  """set_pair_filters_order(ClosePairsFinder self, IMP::PairPredicates const & objs)"""
1640  return _IMP_core.ClosePairsFinder_set_pair_filters_order(self, objs)
1641 
1642 
1643  def add_pair_filter(self, obj):
1644  """add_pair_filter(ClosePairsFinder self, PairPredicate obj) -> unsigned int"""
1645  return _IMP_core.ClosePairsFinder_add_pair_filter(self, obj)
1646 
1647 
1648  def add_pair_filters(self, objs):
1649  """add_pair_filters(ClosePairsFinder self, IMP::PairPredicates const & objs)"""
1650  return _IMP_core.ClosePairsFinder_add_pair_filters(self, objs)
1651 
1652 
1653  def clear_pair_filters(self):
1654  """clear_pair_filters(ClosePairsFinder self)"""
1655  return _IMP_core.ClosePairsFinder_clear_pair_filters(self)
1656 
1657 
1658  def get_number_of_pair_filters(self):
1659  """get_number_of_pair_filters(ClosePairsFinder self) -> unsigned int"""
1660  return _IMP_core.ClosePairsFinder_get_number_of_pair_filters(self)
1661 
1662 
1663  def get_has_pair_filters(self):
1664  """get_has_pair_filters(ClosePairsFinder self) -> bool"""
1665  return _IMP_core.ClosePairsFinder_get_has_pair_filters(self)
1666 
1667 
1668  def get_pair_filter(self, i):
1669  """get_pair_filter(ClosePairsFinder self, unsigned int i) -> PairPredicate"""
1670  return _IMP_core.ClosePairsFinder_get_pair_filter(self, i)
1671 
1672 
1673  def get_pair_filters(self):
1674  """get_pair_filters(ClosePairsFinder self) -> IMP::PairPredicates"""
1675  return _IMP_core.ClosePairsFinder_get_pair_filters(self)
1676 
1677 
1678  def reserve_pair_filters(self, sz):
1679  """reserve_pair_filters(ClosePairsFinder self, unsigned int sz)"""
1680  return _IMP_core.ClosePairsFinder_reserve_pair_filters(self, sz)
1681 
1682 
1683  def __str__(self):
1684  """__str__(ClosePairsFinder self) -> std::string"""
1685  return _IMP_core.ClosePairsFinder___str__(self)
1686 
1687 
1688  def __repr__(self):
1689  """__repr__(ClosePairsFinder self) -> std::string"""
1690  return _IMP_core.ClosePairsFinder___repr__(self)
1691 
1692 
1693  @staticmethod
1694  def get_from(o):
1695  return _object_cast_to_ClosePairsFinder(o)
1696 
1697 ClosePairsFinder_swigregister = _IMP_core.ClosePairsFinder_swigregister
1698 ClosePairsFinder_swigregister(ClosePairsFinder)
1699 
1700 class MonteCarloMoverResult(IMP._Value):
1701  """Proxy of C++ IMP::core::MonteCarloMoverResult class."""
1702 
1703  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1704 
1705  def __init__(self, *args):
1706  """
1707  __init__(IMP::core::MonteCarloMoverResult self, IMP::ParticleIndexes i0, double i1) -> MonteCarloMoverResult
1708  __init__(IMP::core::MonteCarloMoverResult self, IMP::ParticleIndexes i0) -> MonteCarloMoverResult
1709  __init__(IMP::core::MonteCarloMoverResult self) -> MonteCarloMoverResult
1710  """
1711  this = _IMP_core.new_MonteCarloMoverResult(*args)
1712  try:
1713  self.this.append(this)
1714  except __builtin__.Exception:
1715  self.this = this
1716 
1717  def __hash__(self):
1718  """__hash__(MonteCarloMoverResult self) -> std::size_t"""
1719  return _IMP_core.MonteCarloMoverResult___hash__(self)
1720 
1721 
1722  def show(self, *args):
1723  """
1724  show(MonteCarloMoverResult self, _ostream out)
1725  show(MonteCarloMoverResult self)
1726  """
1727  return _IMP_core.MonteCarloMoverResult_show(self, *args)
1728 
1729 
1730  def __cmp__(self, o):
1731  """__cmp__(MonteCarloMoverResult self, MonteCarloMoverResult o) -> int"""
1732  return _IMP_core.MonteCarloMoverResult___cmp__(self, o)
1733 
1734 
1735  def __eq__(self, o):
1736  """__eq__(MonteCarloMoverResult self, MonteCarloMoverResult o) -> bool"""
1737  return _IMP_core.MonteCarloMoverResult___eq__(self, o)
1738 
1739 
1740  def __ne__(self, o):
1741  """__ne__(MonteCarloMoverResult self, MonteCarloMoverResult o) -> bool"""
1742  return _IMP_core.MonteCarloMoverResult___ne__(self, o)
1743 
1744 
1745  def __lt__(self, o):
1746  """__lt__(MonteCarloMoverResult self, MonteCarloMoverResult o) -> bool"""
1747  return _IMP_core.MonteCarloMoverResult___lt__(self, o)
1748 
1749 
1750  def __gt__(self, o):
1751  """__gt__(MonteCarloMoverResult self, MonteCarloMoverResult o) -> bool"""
1752  return _IMP_core.MonteCarloMoverResult___gt__(self, o)
1753 
1754 
1755  def __ge__(self, o):
1756  """__ge__(MonteCarloMoverResult self, MonteCarloMoverResult o) -> bool"""
1757  return _IMP_core.MonteCarloMoverResult___ge__(self, o)
1758 
1759 
1760  def __le__(self, o):
1761  """__le__(MonteCarloMoverResult self, MonteCarloMoverResult o) -> bool"""
1762  return _IMP_core.MonteCarloMoverResult___le__(self, o)
1763 
1764 
1765  def get_moved_particles(self):
1766  """get_moved_particles(MonteCarloMoverResult self) -> IMP::ParticleIndexes const &"""
1767  return _IMP_core.MonteCarloMoverResult_get_moved_particles(self)
1768 
1769 
1770  def set_moved_particles(self, v):
1771  """set_moved_particles(MonteCarloMoverResult self, IMP::ParticleIndexes const & v)"""
1772  return _IMP_core.MonteCarloMoverResult_set_moved_particles(self, v)
1773 
1774 
1775  def get_proposal_ratio(self):
1776  """get_proposal_ratio(MonteCarloMoverResult self) -> double const &"""
1777  return _IMP_core.MonteCarloMoverResult_get_proposal_ratio(self)
1778 
1779 
1780  def set_proposal_ratio(self, v):
1781  """set_proposal_ratio(MonteCarloMoverResult self, double const & v)"""
1782  return _IMP_core.MonteCarloMoverResult_set_proposal_ratio(self, v)
1783 
1784 
1785  def __str__(self):
1786  """__str__(MonteCarloMoverResult self) -> std::string"""
1787  return _IMP_core.MonteCarloMoverResult___str__(self)
1788 
1789 
1790  def __repr__(self):
1791  """__repr__(MonteCarloMoverResult self) -> std::string"""
1792  return _IMP_core.MonteCarloMoverResult___repr__(self)
1793 
1794  __swig_destroy__ = _IMP_core.delete_MonteCarloMoverResult
1795  __del__ = lambda self: None
1796 MonteCarloMoverResult_swigregister = _IMP_core.MonteCarloMoverResult_swigregister
1797 MonteCarloMoverResult_swigregister(MonteCarloMoverResult)
1798 
1799 class MonteCarloMover(IMP.ModelObject):
1800  """Proxy of C++ IMP::core::MonteCarloMover class."""
1801 
1802  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1803 
1804  def __init__(self, m, name):
1805  """__init__(IMP::core::MonteCarloMover self, Model m, std::string name) -> MonteCarloMover"""
1806  if self.__class__ == MonteCarloMover:
1807  _self = None
1808  else:
1809  _self = self
1810  this = _IMP_core.new_MonteCarloMover(_self, m, name)
1811  try:
1812  self.this.append(this)
1813  except __builtin__.Exception:
1814  self.this = this
1815 
1816  if self.__class__ != MonteCarloMover:
1817  _director_objects.register(self)
1818 
1819 
1820 
1821 
1822  def propose(self):
1823  """propose(MonteCarloMover self) -> MonteCarloMoverResult"""
1824  return _IMP_core.MonteCarloMover_propose(self)
1825 
1826 
1827  def reject(self):
1828  """reject(MonteCarloMover self)"""
1829  return _IMP_core.MonteCarloMover_reject(self)
1830 
1831 
1832  def accept(self):
1833  """accept(MonteCarloMover self)"""
1834  return _IMP_core.MonteCarloMover_accept(self)
1835 
1836 
1837  def get_number_of_proposed(self):
1838  """get_number_of_proposed(MonteCarloMover self) -> unsigned int"""
1839  return _IMP_core.MonteCarloMover_get_number_of_proposed(self)
1840 
1841 
1842  def get_number_of_accepted(self):
1843  """get_number_of_accepted(MonteCarloMover self) -> unsigned int"""
1844  return _IMP_core.MonteCarloMover_get_number_of_accepted(self)
1845 
1846 
1847  def reset_statistics(self):
1848  """reset_statistics(MonteCarloMover self)"""
1849  return _IMP_core.MonteCarloMover_reset_statistics(self)
1850 
1851 
1852  def do_propose(self):
1853  """do_propose(MonteCarloMover self) -> MonteCarloMoverResult"""
1854  return _IMP_core.MonteCarloMover_do_propose(self)
1855 
1856 
1857  def do_reject(self):
1858  """do_reject(MonteCarloMover self)"""
1859  return _IMP_core.MonteCarloMover_do_reject(self)
1860 
1861 
1862  def do_accept(self):
1863  """do_accept(MonteCarloMover self)"""
1864  return _IMP_core.MonteCarloMover_do_accept(self)
1865 
1866 
1867  def do_get_outputs(self):
1868  """do_get_outputs(MonteCarloMover self) -> IMP::ModelObjectsTemp"""
1869  return _IMP_core.MonteCarloMover_do_get_outputs(self)
1870 
1871 
1872  def __str__(self):
1873  """__str__(MonteCarloMover self) -> std::string"""
1874  return _IMP_core.MonteCarloMover___str__(self)
1875 
1876 
1877  def __repr__(self):
1878  """__repr__(MonteCarloMover self) -> std::string"""
1879  return _IMP_core.MonteCarloMover___repr__(self)
1880 
1881 
1882  @staticmethod
1883  def get_from(o):
1884  return _object_cast_to_MonteCarloMover(o)
1885 
1886 
1887  def get_type_name(self):
1888  return self.__class__.__name__
1889  def do_show(self, out):
1890  pass
1891  def get_version_info(self):
1892  if"IMP::core" == "IMP":
1893  return VersionInfo(self.__module__,
1894  __import__(self.__module__).get_module_version())
1895  else:
1896  return IMP.VersionInfo(self.__module__,
1897  __import__(self.__module__).get_module_version())
1898  @staticmethod
1899  def get_from(o):
1900  return _object_cast_to_MonteCarloMover(o)
1901 
1902  __swig_destroy__ = _IMP_core.delete_MonteCarloMover
1903  __del__ = lambda self: None
1904  def __disown__(self):
1905  self.this.disown()
1906  _IMP_core.disown_MonteCarloMover(self)
1907  return weakref_proxy(self)
1908 
1909  def do_destroy(self):
1910  """do_destroy(MonteCarloMover self)"""
1911  return _IMP_core.MonteCarloMover_do_destroy(self)
1912 
1913 
1914  def handle_set_has_required_score_states(self, arg0):
1915  """handle_set_has_required_score_states(MonteCarloMover self, bool arg0)"""
1916  return _IMP_core.MonteCarloMover_handle_set_has_required_score_states(self, arg0)
1917 
1918 
1919  def do_get_inputs(self):
1920  """do_get_inputs(MonteCarloMover self) -> IMP::ModelObjectsTemp"""
1921  return _IMP_core.MonteCarloMover_do_get_inputs(self)
1922 
1923 
1924  def do_get_interactions(self):
1925  """do_get_interactions(MonteCarloMover self) -> IMP::ModelObjectsTemps"""
1926  return _IMP_core.MonteCarloMover_do_get_interactions(self)
1927 
1928 MonteCarloMover_swigregister = _IMP_core.MonteCarloMover_swigregister
1929 MonteCarloMover_swigregister(MonteCarloMover)
1930 
1931 class XYZ(IMP.Decorator):
1932  """Proxy of C++ IMP::core::XYZ class."""
1933 
1934  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1935 
1936  def get_coordinate_key(i):
1937  """get_coordinate_key(unsigned int i) -> FloatKey"""
1938  return _IMP_core.XYZ_get_coordinate_key(i)
1939 
1940  get_coordinate_key = staticmethod(get_coordinate_key)
1941 
1942  def __init__(self, *args):
1943  """
1944  __init__(IMP::core::XYZ self) -> XYZ
1945  __init__(IMP::core::XYZ self, Model m, ParticleIndex id) -> XYZ
1946  __init__(IMP::core::XYZ self, _ParticleAdaptor d) -> XYZ
1947  """
1948  this = _IMP_core.new_XYZ(*args)
1949  try:
1950  self.this.append(this)
1951  except __builtin__.Exception:
1952  self.this = this
1953 
1954  def show(self, *args):
1955  """
1956  show(XYZ self, _ostream out)
1957  show(XYZ self)
1958  """
1959  return _IMP_core.XYZ_show(self, *args)
1960 
1961 
1962  def setup_particle(*args):
1963  """
1964  setup_particle(Model m, ParticleIndex pi) -> XYZ
1965  setup_particle(_ParticleAdaptor decorator) -> XYZ
1966  setup_particle(Model m, ParticleIndex pi, Vector3D v) -> XYZ
1967  setup_particle(_ParticleAdaptor decorator, Vector3D v) -> XYZ
1968  """
1969  return _IMP_core.XYZ_setup_particle(*args)
1970 
1971  setup_particle = staticmethod(setup_particle)
1972 
1973  def get_x(self):
1974  """get_x(XYZ self) -> IMP::Float"""
1975  return _IMP_core.XYZ_get_x(self)
1976 
1977 
1978  def set_x(self, t):
1979  """set_x(XYZ self, IMP::Float t)"""
1980  return _IMP_core.XYZ_set_x(self, t)
1981 
1982 
1983  def get_y(self):
1984  """get_y(XYZ self) -> IMP::Float"""
1985  return _IMP_core.XYZ_get_y(self)
1986 
1987 
1988  def set_y(self, t):
1989  """set_y(XYZ self, IMP::Float t)"""
1990  return _IMP_core.XYZ_set_y(self, t)
1991 
1992 
1993  def get_z(self):
1994  """get_z(XYZ self) -> IMP::Float"""
1995  return _IMP_core.XYZ_get_z(self)
1996 
1997 
1998  def set_z(self, t):
1999  """set_z(XYZ self, IMP::Float t)"""
2000  return _IMP_core.XYZ_set_z(self, t)
2001 
2002 
2003  def set_coordinate(self, i, v):
2004  """set_coordinate(XYZ self, unsigned int i, IMP::Float v)"""
2005  return _IMP_core.XYZ_set_coordinate(self, i, v)
2006 
2007 
2008  def set_coordinates(self, v):
2009  """set_coordinates(XYZ self, Vector3D v)"""
2010  return _IMP_core.XYZ_set_coordinates(self, v)
2011 
2012 
2013  def get_coordinate(self, i):
2014  """get_coordinate(XYZ self, int i) -> IMP::Float"""
2015  return _IMP_core.XYZ_get_coordinate(self, i)
2016 
2017 
2018  def add_to_derivatives(self, v, d):
2019  """add_to_derivatives(XYZ self, Vector3D v, DerivativeAccumulator d)"""
2020  return _IMP_core.XYZ_add_to_derivatives(self, v, d)
2021 
2022 
2023  def get_coordinates_are_optimized(self):
2024  """get_coordinates_are_optimized(XYZ self) -> bool"""
2025  return _IMP_core.XYZ_get_coordinates_are_optimized(self)
2026 
2027 
2028  def set_coordinates_are_optimized(self, tf):
2029  """set_coordinates_are_optimized(XYZ self, bool tf)"""
2030  return _IMP_core.XYZ_set_coordinates_are_optimized(self, tf)
2031 
2032 
2033  def get_vector_to(self, b):
2034  """get_vector_to(XYZ self, XYZ b) -> Vector3D"""
2035  return _IMP_core.XYZ_get_vector_to(self, b)
2036 
2037 
2038  def get_coordinates(self):
2039  """get_coordinates(XYZ self) -> Vector3D"""
2040  return _IMP_core.XYZ_get_coordinates(self)
2041 
2042 
2043  def get_derivatives(self):
2044  """get_derivatives(XYZ self) -> Vector3D"""
2045  return _IMP_core.XYZ_get_derivatives(self)
2046 
2047 
2048  def get_is_setup(*args):
2049  """
2050  get_is_setup(_ParticleAdaptor p) -> bool
2051  get_is_setup(Model m, ParticleIndex pi) -> bool
2052  """
2053  return _IMP_core.XYZ_get_is_setup(*args)
2054 
2055  get_is_setup = staticmethod(get_is_setup)
2056 
2057  def get_xyz_keys():
2058  """get_xyz_keys() -> IMP::FloatKeys const &"""
2059  return _IMP_core.XYZ_get_xyz_keys()
2060 
2061  get_xyz_keys = staticmethod(get_xyz_keys)
2062 
2063  def add_attribute(self, *args):
2064  """
2065  add_attribute(XYZ self, FloatKey k, IMP::Float v, bool opt)
2066  add_attribute(XYZ self, FloatKey a0, IMP::Float a1)
2067  add_attribute(XYZ self, IntKey a0, IMP::Int a1)
2068  add_attribute(XYZ self, StringKey a0, IMP::String a1)
2069  add_attribute(XYZ self, ParticleIndexKey a0, Particle a1)
2070  add_attribute(XYZ self, ObjectKey a0, Object a1)
2071  """
2072  return _IMP_core.XYZ_add_attribute(self, *args)
2073 
2074 
2075  def get_value(self, *args):
2076  """
2077  get_value(XYZ self, FloatKey a0) -> IMP::Float
2078  get_value(XYZ self, IntKey a0) -> IMP::Int
2079  get_value(XYZ self, StringKey a0) -> IMP::String
2080  get_value(XYZ self, ParticleIndexKey a0) -> Particle
2081  get_value(XYZ self, ObjectKey a0) -> Object
2082  """
2083  return _IMP_core.XYZ_get_value(self, *args)
2084 
2085 
2086  def set_value(self, *args):
2087  """
2088  set_value(XYZ self, FloatKey a0, IMP::Float a1)
2089  set_value(XYZ self, IntKey a0, IMP::Int a1)
2090  set_value(XYZ self, StringKey a0, IMP::String a1)
2091  set_value(XYZ self, ParticleIndexKey a0, Particle a1)
2092  set_value(XYZ self, ObjectKey a0, Object a1)
2093  """
2094  return _IMP_core.XYZ_set_value(self, *args)
2095 
2096 
2097  def remove_attribute(self, *args):
2098  """
2099  remove_attribute(XYZ self, FloatKey a0)
2100  remove_attribute(XYZ self, IntKey a0)
2101  remove_attribute(XYZ self, StringKey a0)
2102  remove_attribute(XYZ self, ParticleIndexKey a0)
2103  remove_attribute(XYZ self, ObjectKey a0)
2104  """
2105  return _IMP_core.XYZ_remove_attribute(self, *args)
2106 
2107 
2108  def has_attribute(self, *args):
2109  """
2110  has_attribute(XYZ self, FloatKey a0) -> bool
2111  has_attribute(XYZ self, IntKey a0) -> bool
2112  has_attribute(XYZ self, StringKey a0) -> bool
2113  has_attribute(XYZ self, ParticleIndexKey a0) -> bool
2114  has_attribute(XYZ self, ObjectKey a0) -> bool
2115  """
2116  return _IMP_core.XYZ_has_attribute(self, *args)
2117 
2118 
2119  def get_derivative(self, *args):
2120  """
2121  get_derivative(XYZ self, int i) -> IMP::Float
2122  get_derivative(XYZ self, FloatKey a0) -> double
2123  """
2124  return _IMP_core.XYZ_get_derivative(self, *args)
2125 
2126 
2127  def get_name(self):
2128  """get_name(XYZ self) -> std::string"""
2129  return _IMP_core.XYZ_get_name(self)
2130 
2131 
2132  def clear_caches(self):
2133  """clear_caches(XYZ self)"""
2134  return _IMP_core.XYZ_clear_caches(self)
2135 
2136 
2137  def set_name(self, a0):
2138  """set_name(XYZ self, std::string a0)"""
2139  return _IMP_core.XYZ_set_name(self, a0)
2140 
2141 
2142  def set_check_level(self, a0):
2143  """set_check_level(XYZ self, IMP::CheckLevel a0)"""
2144  return _IMP_core.XYZ_set_check_level(self, a0)
2145 
2146 
2147  def add_to_derivative(self, *args):
2148  """
2149  add_to_derivative(XYZ self, int i, IMP::Float v, DerivativeAccumulator d)
2150  add_to_derivative(XYZ self, FloatKey a0, double a1, DerivativeAccumulator a2)
2151  """
2152  return _IMP_core.XYZ_add_to_derivative(self, *args)
2153 
2154 
2155  def set_is_optimized(self, a0, a1):
2156  """set_is_optimized(XYZ self, FloatKey a0, bool a1)"""
2157  return _IMP_core.XYZ_set_is_optimized(self, a0, a1)
2158 
2159 
2160  def get_is_optimized(self, a0):
2161  """get_is_optimized(XYZ self, FloatKey a0) -> bool"""
2162  return _IMP_core.XYZ_get_is_optimized(self, a0)
2163 
2164 
2165  def get_check_level(self):
2166  """get_check_level(XYZ self) -> IMP::CheckLevel"""
2167  return _IMP_core.XYZ_get_check_level(self)
2168 
2169 
2170  def __eq__(self, *args):
2171  """
2172  __eq__(XYZ self, XYZ o) -> bool
2173  __eq__(XYZ self, Particle d) -> bool
2174  """
2175  return _IMP_core.XYZ___eq__(self, *args)
2176 
2177 
2178  def __ne__(self, *args):
2179  """
2180  __ne__(XYZ self, XYZ o) -> bool
2181  __ne__(XYZ self, Particle d) -> bool
2182  """
2183  return _IMP_core.XYZ___ne__(self, *args)
2184 
2185 
2186  def __le__(self, *args):
2187  """
2188  __le__(XYZ self, XYZ o) -> bool
2189  __le__(XYZ self, Particle d) -> bool
2190  """
2191  return _IMP_core.XYZ___le__(self, *args)
2192 
2193 
2194  def __lt__(self, *args):
2195  """
2196  __lt__(XYZ self, XYZ o) -> bool
2197  __lt__(XYZ self, Particle d) -> bool
2198  """
2199  return _IMP_core.XYZ___lt__(self, *args)
2200 
2201 
2202  def __ge__(self, *args):
2203  """
2204  __ge__(XYZ self, XYZ o) -> bool
2205  __ge__(XYZ self, Particle d) -> bool
2206  """
2207  return _IMP_core.XYZ___ge__(self, *args)
2208 
2209 
2210  def __gt__(self, *args):
2211  """
2212  __gt__(XYZ self, XYZ o) -> bool
2213  __gt__(XYZ self, Particle d) -> bool
2214  """
2215  return _IMP_core.XYZ___gt__(self, *args)
2216 
2217 
2218  def __hash__(self):
2219  """__hash__(XYZ self) -> std::size_t"""
2220  return _IMP_core.XYZ___hash__(self)
2221 
2222 
2223  def __str__(self):
2224  """__str__(XYZ self) -> std::string"""
2225  return _IMP_core.XYZ___str__(self)
2226 
2227 
2228  def __repr__(self):
2229  """__repr__(XYZ self) -> std::string"""
2230  return _IMP_core.XYZ___repr__(self)
2231 
2232  __swig_destroy__ = _IMP_core.delete_XYZ
2233  __del__ = lambda self: None
2234 XYZ_swigregister = _IMP_core.XYZ_swigregister
2235 XYZ_swigregister(XYZ)
2236 
2237 def XYZ_get_coordinate_key(i):
2238  """XYZ_get_coordinate_key(unsigned int i) -> FloatKey"""
2239  return _IMP_core.XYZ_get_coordinate_key(i)
2240 
2241 def XYZ_setup_particle(*args):
2242  """
2243  setup_particle(Model m, ParticleIndex pi) -> XYZ
2244  setup_particle(_ParticleAdaptor decorator) -> XYZ
2245  setup_particle(Model m, ParticleIndex pi, Vector3D v) -> XYZ
2246  XYZ_setup_particle(_ParticleAdaptor decorator, Vector3D v) -> XYZ
2247  """
2248  return _IMP_core.XYZ_setup_particle(*args)
2249 
2250 def XYZ_get_is_setup(*args):
2251  """
2252  get_is_setup(_ParticleAdaptor p) -> bool
2253  XYZ_get_is_setup(Model m, ParticleIndex pi) -> bool
2254  """
2255  return _IMP_core.XYZ_get_is_setup(*args)
2256 
2257 def XYZ_get_xyz_keys():
2258  """XYZ_get_xyz_keys() -> IMP::FloatKeys const &"""
2259  return _IMP_core.XYZ_get_xyz_keys()
2260 
2261 
2262 def set_vector_geometry(d, v):
2263  """set_vector_geometry(XYZ d, Vector3D v)"""
2264  return _IMP_core.set_vector_geometry(d, v)
2265 
2266 def get_vector_geometry(d):
2267  """get_vector_geometry(XYZ d) -> Vector3D"""
2268  return _IMP_core.get_vector_geometry(d)
2269 
2270 def get_dihedral(a, b, c, d):
2271  """get_dihedral(XYZ a, XYZ b, XYZ c, XYZ d) -> double"""
2272  return _IMP_core.get_dihedral(a, b, c, d)
2273 class XYZR(XYZ):
2274  """Proxy of C++ IMP::core::XYZR class."""
2275 
2276  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2277 
2278  def __init__(self, *args):
2279  """
2280  __init__(IMP::core::XYZR self) -> XYZR
2281  __init__(IMP::core::XYZR self, Model m, ParticleIndex id) -> XYZR
2282  __init__(IMP::core::XYZR self, _ParticleAdaptor d) -> XYZR
2283  """
2284  this = _IMP_core.new_XYZR(*args)
2285  try:
2286  self.this.append(this)
2287  except __builtin__.Exception:
2288  self.this = this
2289 
2290  def show(self, *args):
2291  """
2292  show(XYZR self, _ostream out)
2293  show(XYZR self)
2294  """
2295  return _IMP_core.XYZR_show(self, *args)
2296 
2297 
2298  def setup_particle(*args):
2299  """
2300  setup_particle(Model m, ParticleIndex pi) -> XYZR
2301  setup_particle(_ParticleAdaptor decorator) -> XYZR
2302  setup_particle(Model m, ParticleIndex pi, IMP::Float radius) -> XYZR
2303  setup_particle(_ParticleAdaptor decorator, IMP::Float radius) -> XYZR
2304  setup_particle(Model m, ParticleIndex pi, Sphere3D ball) -> XYZR
2305  setup_particle(_ParticleAdaptor decorator, Sphere3D ball) -> XYZR
2306  """
2307  return _IMP_core.XYZR_setup_particle(*args)
2308 
2309  setup_particle = staticmethod(setup_particle)
2310 
2311  def get_is_setup(*args):
2312  """
2313  get_is_setup(_ParticleAdaptor p) -> bool
2314  get_is_setup(Model m, ParticleIndex pi) -> bool
2315  """
2316  return _IMP_core.XYZR_get_is_setup(*args)
2317 
2318  get_is_setup = staticmethod(get_is_setup)
2319 
2320  def get_radius(self):
2321  """get_radius(XYZR self) -> double"""
2322  return _IMP_core.XYZR_get_radius(self)
2323 
2324 
2325  def set_radius(self, r):
2326  """set_radius(XYZR self, double r)"""
2327  return _IMP_core.XYZR_set_radius(self, r)
2328 
2329 
2330  def get_sphere(self):
2331  """get_sphere(XYZR self) -> Sphere3D"""
2332  return _IMP_core.XYZR_get_sphere(self)
2333 
2334 
2335  def set_sphere(self, s):
2336  """set_sphere(XYZR self, Sphere3D s)"""
2337  return _IMP_core.XYZR_set_sphere(self, s)
2338 
2339 
2340  def get_radius_key():
2341  """get_radius_key() -> FloatKey"""
2342  return _IMP_core.XYZR_get_radius_key()
2343 
2344  get_radius_key = staticmethod(get_radius_key)
2345 
2346  def add_to_radius_derivative(self, v, d):
2347  """add_to_radius_derivative(XYZR self, double v, DerivativeAccumulator d)"""
2348  return _IMP_core.XYZR_add_to_radius_derivative(self, v, d)
2349 
2350 
2351  def add_attribute(self, *args):
2352  """
2353  add_attribute(XYZR self, FloatKey k, IMP::Float v, bool opt)
2354  add_attribute(XYZR self, FloatKey a0, IMP::Float a1)
2355  add_attribute(XYZR self, IntKey a0, IMP::Int a1)
2356  add_attribute(XYZR self, StringKey a0, IMP::String a1)
2357  add_attribute(XYZR self, ParticleIndexKey a0, Particle a1)
2358  add_attribute(XYZR self, ObjectKey a0, Object a1)
2359  """
2360  return _IMP_core.XYZR_add_attribute(self, *args)
2361 
2362 
2363  def get_value(self, *args):
2364  """
2365  get_value(XYZR self, FloatKey a0) -> IMP::Float
2366  get_value(XYZR self, IntKey a0) -> IMP::Int
2367  get_value(XYZR self, StringKey a0) -> IMP::String
2368  get_value(XYZR self, ParticleIndexKey a0) -> Particle
2369  get_value(XYZR self, ObjectKey a0) -> Object
2370  """
2371  return _IMP_core.XYZR_get_value(self, *args)
2372 
2373 
2374  def set_value(self, *args):
2375  """
2376  set_value(XYZR self, FloatKey a0, IMP::Float a1)
2377  set_value(XYZR self, IntKey a0, IMP::Int a1)
2378  set_value(XYZR self, StringKey a0, IMP::String a1)
2379  set_value(XYZR self, ParticleIndexKey a0, Particle a1)
2380  set_value(XYZR self, ObjectKey a0, Object a1)
2381  """
2382  return _IMP_core.XYZR_set_value(self, *args)
2383 
2384 
2385  def remove_attribute(self, *args):
2386  """
2387  remove_attribute(XYZR self, FloatKey a0)
2388  remove_attribute(XYZR self, IntKey a0)
2389  remove_attribute(XYZR self, StringKey a0)
2390  remove_attribute(XYZR self, ParticleIndexKey a0)
2391  remove_attribute(XYZR self, ObjectKey a0)
2392  """
2393  return _IMP_core.XYZR_remove_attribute(self, *args)
2394 
2395 
2396  def has_attribute(self, *args):
2397  """
2398  has_attribute(XYZR self, FloatKey a0) -> bool
2399  has_attribute(XYZR self, IntKey a0) -> bool
2400  has_attribute(XYZR self, StringKey a0) -> bool
2401  has_attribute(XYZR self, ParticleIndexKey a0) -> bool
2402  has_attribute(XYZR self, ObjectKey a0) -> bool
2403  """
2404  return _IMP_core.XYZR_has_attribute(self, *args)
2405 
2406 
2407  def get_derivative(self, a0):
2408  """get_derivative(XYZR self, FloatKey a0) -> double"""
2409  return _IMP_core.XYZR_get_derivative(self, a0)
2410 
2411 
2412  def get_name(self):
2413  """get_name(XYZR self) -> std::string"""
2414  return _IMP_core.XYZR_get_name(self)
2415 
2416 
2417  def clear_caches(self):
2418  """clear_caches(XYZR self)"""
2419  return _IMP_core.XYZR_clear_caches(self)
2420 
2421 
2422  def set_name(self, a0):
2423  """set_name(XYZR self, std::string a0)"""
2424  return _IMP_core.XYZR_set_name(self, a0)
2425 
2426 
2427  def set_check_level(self, a0):
2428  """set_check_level(XYZR self, IMP::CheckLevel a0)"""
2429  return _IMP_core.XYZR_set_check_level(self, a0)
2430 
2431 
2432  def add_to_derivative(self, a0, a1, a2):
2433  """add_to_derivative(XYZR self, FloatKey a0, double a1, DerivativeAccumulator a2)"""
2434  return _IMP_core.XYZR_add_to_derivative(self, a0, a1, a2)
2435 
2436 
2437  def set_is_optimized(self, a0, a1):
2438  """set_is_optimized(XYZR self, FloatKey a0, bool a1)"""
2439  return _IMP_core.XYZR_set_is_optimized(self, a0, a1)
2440 
2441 
2442  def get_is_optimized(self, a0):
2443  """get_is_optimized(XYZR self, FloatKey a0) -> bool"""
2444  return _IMP_core.XYZR_get_is_optimized(self, a0)
2445 
2446 
2447  def get_check_level(self):
2448  """get_check_level(XYZR self) -> IMP::CheckLevel"""
2449  return _IMP_core.XYZR_get_check_level(self)
2450 
2451 
2452  def __eq__(self, *args):
2453  """
2454  __eq__(XYZR self, XYZR o) -> bool
2455  __eq__(XYZR self, Particle d) -> bool
2456  """
2457  return _IMP_core.XYZR___eq__(self, *args)
2458 
2459 
2460  def __ne__(self, *args):
2461  """
2462  __ne__(XYZR self, XYZR o) -> bool
2463  __ne__(XYZR self, Particle d) -> bool
2464  """
2465  return _IMP_core.XYZR___ne__(self, *args)
2466 
2467 
2468  def __le__(self, *args):
2469  """
2470  __le__(XYZR self, XYZR o) -> bool
2471  __le__(XYZR self, Particle d) -> bool
2472  """
2473  return _IMP_core.XYZR___le__(self, *args)
2474 
2475 
2476  def __lt__(self, *args):
2477  """
2478  __lt__(XYZR self, XYZR o) -> bool
2479  __lt__(XYZR self, Particle d) -> bool
2480  """
2481  return _IMP_core.XYZR___lt__(self, *args)
2482 
2483 
2484  def __ge__(self, *args):
2485  """
2486  __ge__(XYZR self, XYZR o) -> bool
2487  __ge__(XYZR self, Particle d) -> bool
2488  """
2489  return _IMP_core.XYZR___ge__(self, *args)
2490 
2491 
2492  def __gt__(self, *args):
2493  """
2494  __gt__(XYZR self, XYZR o) -> bool
2495  __gt__(XYZR self, Particle d) -> bool
2496  """
2497  return _IMP_core.XYZR___gt__(self, *args)
2498 
2499 
2500  def __hash__(self):
2501  """__hash__(XYZR self) -> std::size_t"""
2502  return _IMP_core.XYZR___hash__(self)
2503 
2504 
2505  def __str__(self):
2506  """__str__(XYZR self) -> std::string"""
2507  return _IMP_core.XYZR___str__(self)
2508 
2509 
2510  def __repr__(self):
2511  """__repr__(XYZR self) -> std::string"""
2512  return _IMP_core.XYZR___repr__(self)
2513 
2514  __swig_destroy__ = _IMP_core.delete_XYZR
2515  __del__ = lambda self: None
2516 XYZR_swigregister = _IMP_core.XYZR_swigregister
2517 XYZR_swigregister(XYZR)
2518 
2519 def XYZR_setup_particle(*args):
2520  """
2521  setup_particle(Model m, ParticleIndex pi) -> XYZR
2522  setup_particle(_ParticleAdaptor decorator) -> XYZR
2523  setup_particle(Model m, ParticleIndex pi, IMP::Float radius) -> XYZR
2524  setup_particle(_ParticleAdaptor decorator, IMP::Float radius) -> XYZR
2525  setup_particle(Model m, ParticleIndex pi, Sphere3D ball) -> XYZR
2526  XYZR_setup_particle(_ParticleAdaptor decorator, Sphere3D ball) -> XYZR
2527  """
2528  return _IMP_core.XYZR_setup_particle(*args)
2529 
2530 def XYZR_get_is_setup(*args):
2531  """
2532  get_is_setup(_ParticleAdaptor p) -> bool
2533  XYZR_get_is_setup(Model m, ParticleIndex pi) -> bool
2534  """
2535  return _IMP_core.XYZR_get_is_setup(*args)
2536 
2537 def XYZR_get_radius_key():
2538  """XYZR_get_radius_key() -> FloatKey"""
2539  return _IMP_core.XYZR_get_radius_key()
2540 
2541 
2542 def set_enclosing_sphere(b, v, slack=0):
2543  """
2544  set_enclosing_sphere(XYZR b, IMP::core::XYZs const & v, double slack=0)
2545  set_enclosing_sphere(XYZR b, IMP::core::XYZs const & v)
2546  """
2547  return _IMP_core.set_enclosing_sphere(b, v, slack)
2548 
2549 def set_enclosing_radius(b, v):
2550  """set_enclosing_radius(XYZR b, IMP::core::XYZs const & v)"""
2551  return _IMP_core.set_enclosing_radius(b, v)
2552 
2553 def get_enclosing_sphere(v):
2554  """get_enclosing_sphere(IMP::core::XYZs const & v) -> Sphere3D"""
2555  return _IMP_core.get_enclosing_sphere(v)
2556 
2557 def create_xyzr_particles(m, num, radius, box_side=10):
2558  """
2559  create_xyzr_particles(Model m, unsigned int num, IMP::Float radius, IMP::Float box_side=10) -> IMP::core::XYZRs
2560  create_xyzr_particles(Model m, unsigned int num, IMP::Float radius) -> IMP::core::XYZRs
2561  """
2562  return _IMP_core.create_xyzr_particles(m, num, radius, box_side)
2563 class XYZRGeometry(IMP.display.SingletonGeometry):
2564  """Proxy of C++ IMP::core::XYZRGeometry class."""
2565 
2566  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2567 
2568  def __init__(self, *args):
2569  """
2570  __init__(IMP::core::XYZRGeometry self, Particle p) -> XYZRGeometry
2571  __init__(IMP::core::XYZRGeometry self, XYZR d) -> XYZRGeometry
2572  """
2573  this = _IMP_core.new_XYZRGeometry(*args)
2574  try:
2575  self.this.append(this)
2576  except __builtin__.Exception:
2577  self.this = this
2578 
2579  def get_version_info(self):
2580  """get_version_info(XYZRGeometry self) -> VersionInfo"""
2581  return _IMP_core.XYZRGeometry_get_version_info(self)
2582 
2583 
2584  def __str__(self):
2585  """__str__(XYZRGeometry self) -> std::string"""
2586  return _IMP_core.XYZRGeometry___str__(self)
2587 
2588 
2589  def __repr__(self):
2590  """__repr__(XYZRGeometry self) -> std::string"""
2591  return _IMP_core.XYZRGeometry___repr__(self)
2592 
2593 
2594  @staticmethod
2595  def get_from(o):
2596  return _object_cast_to_XYZRGeometry(o)
2597 
2598 XYZRGeometry_swigregister = _IMP_core.XYZRGeometry_swigregister
2599 XYZRGeometry_swigregister(XYZRGeometry)
2600 
2601 class XYZRsGeometry(IMP.display.SingletonsGeometry):
2602  """Proxy of C++ IMP::core::XYZRsGeometry class."""
2603 
2604  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2605 
2606  def __init__(self, sc):
2607  """__init__(IMP::core::XYZRsGeometry self, SingletonContainer sc) -> XYZRsGeometry"""
2608  this = _IMP_core.new_XYZRsGeometry(sc)
2609  try:
2610  self.this.append(this)
2611  except __builtin__.Exception:
2612  self.this = this
2613 
2614  def get_version_info(self):
2615  """get_version_info(XYZRsGeometry self) -> VersionInfo"""
2616  return _IMP_core.XYZRsGeometry_get_version_info(self)
2617 
2618 
2619  def __str__(self):
2620  """__str__(XYZRsGeometry self) -> std::string"""
2621  return _IMP_core.XYZRsGeometry___str__(self)
2622 
2623 
2624  def __repr__(self):
2625  """__repr__(XYZRsGeometry self) -> std::string"""
2626  return _IMP_core.XYZRsGeometry___repr__(self)
2627 
2628 
2629  @staticmethod
2630  def get_from(o):
2631  return _object_cast_to_XYZRsGeometry(o)
2632 
2633 XYZRsGeometry_swigregister = _IMP_core.XYZRsGeometry_swigregister
2634 XYZRsGeometry_swigregister(XYZRsGeometry)
2635 
2636 class XYZDerivativeGeometry(IMP.display.SingletonGeometry):
2637  """Proxy of C++ IMP::core::XYZDerivativeGeometry class."""
2638 
2639  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2640 
2641  def __init__(self, *args):
2642  """
2643  __init__(IMP::core::XYZDerivativeGeometry self, Particle p) -> XYZDerivativeGeometry
2644  __init__(IMP::core::XYZDerivativeGeometry self, XYZ d) -> XYZDerivativeGeometry
2645  """
2646  this = _IMP_core.new_XYZDerivativeGeometry(*args)
2647  try:
2648  self.this.append(this)
2649  except __builtin__.Exception:
2650  self.this = this
2651 
2652  def get_version_info(self):
2653  """get_version_info(XYZDerivativeGeometry self) -> VersionInfo"""
2654  return _IMP_core.XYZDerivativeGeometry_get_version_info(self)
2655 
2656 
2657  def __str__(self):
2658  """__str__(XYZDerivativeGeometry self) -> std::string"""
2659  return _IMP_core.XYZDerivativeGeometry___str__(self)
2660 
2661 
2662  def __repr__(self):
2663  """__repr__(XYZDerivativeGeometry self) -> std::string"""
2664  return _IMP_core.XYZDerivativeGeometry___repr__(self)
2665 
2666 
2667  @staticmethod
2668  def get_from(o):
2669  return _object_cast_to_XYZDerivativeGeometry(o)
2670 
2671 XYZDerivativeGeometry_swigregister = _IMP_core.XYZDerivativeGeometry_swigregister
2672 XYZDerivativeGeometry_swigregister(XYZDerivativeGeometry)
2673 
2674 class XYZDerivativesGeometry(IMP.display.SingletonsGeometry):
2675  """Proxy of C++ IMP::core::XYZDerivativesGeometry class."""
2676 
2677  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2678 
2679  def __init__(self, sc):
2680  """__init__(IMP::core::XYZDerivativesGeometry self, SingletonContainer sc) -> XYZDerivativesGeometry"""
2681  this = _IMP_core.new_XYZDerivativesGeometry(sc)
2682  try:
2683  self.this.append(this)
2684  except __builtin__.Exception:
2685  self.this = this
2686 
2687  def get_version_info(self):
2688  """get_version_info(XYZDerivativesGeometry self) -> VersionInfo"""
2689  return _IMP_core.XYZDerivativesGeometry_get_version_info(self)
2690 
2691 
2692  def __str__(self):
2693  """__str__(XYZDerivativesGeometry self) -> std::string"""
2694  return _IMP_core.XYZDerivativesGeometry___str__(self)
2695 
2696 
2697  def __repr__(self):
2698  """__repr__(XYZDerivativesGeometry self) -> std::string"""
2699  return _IMP_core.XYZDerivativesGeometry___repr__(self)
2700 
2701 
2702  @staticmethod
2703  def get_from(o):
2704  return _object_cast_to_XYZDerivativesGeometry(o)
2705 
2706 XYZDerivativesGeometry_swigregister = _IMP_core.XYZDerivativesGeometry_swigregister
2707 XYZDerivativesGeometry_swigregister(XYZDerivativesGeometry)
2708 
2709 class EdgePairGeometry(IMP.display.PairGeometry):
2710  """Proxy of C++ IMP::core::EdgePairGeometry class."""
2711 
2712  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2713 
2714  def __init__(self, pp):
2715  """__init__(IMP::core::EdgePairGeometry self, IMP::ParticlePair const & pp) -> EdgePairGeometry"""
2716  this = _IMP_core.new_EdgePairGeometry(pp)
2717  try:
2718  self.this.append(this)
2719  except __builtin__.Exception:
2720  self.this = this
2721 
2722  def get_version_info(self):
2723  """get_version_info(EdgePairGeometry self) -> VersionInfo"""
2724  return _IMP_core.EdgePairGeometry_get_version_info(self)
2725 
2726 
2727  def __str__(self):
2728  """__str__(EdgePairGeometry self) -> std::string"""
2729  return _IMP_core.EdgePairGeometry___str__(self)
2730 
2731 
2732  def __repr__(self):
2733  """__repr__(EdgePairGeometry self) -> std::string"""
2734  return _IMP_core.EdgePairGeometry___repr__(self)
2735 
2736 
2737  @staticmethod
2738  def get_from(o):
2739  return _object_cast_to_EdgePairGeometry(o)
2740 
2741 EdgePairGeometry_swigregister = _IMP_core.EdgePairGeometry_swigregister
2742 EdgePairGeometry_swigregister(EdgePairGeometry)
2743 
2744 class EdgePairsGeometry(IMP.display.PairsGeometry):
2745  """Proxy of C++ IMP::core::EdgePairsGeometry class."""
2746 
2747  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2748 
2749  def __init__(self, sc):
2750  """__init__(IMP::core::EdgePairsGeometry self, PairContainer sc) -> EdgePairsGeometry"""
2751  this = _IMP_core.new_EdgePairsGeometry(sc)
2752  try:
2753  self.this.append(this)
2754  except __builtin__.Exception:
2755  self.this = this
2756 
2757  def get_version_info(self):
2758  """get_version_info(EdgePairsGeometry self) -> VersionInfo"""
2759  return _IMP_core.EdgePairsGeometry_get_version_info(self)
2760 
2761 
2762  def __str__(self):
2763  """__str__(EdgePairsGeometry self) -> std::string"""
2764  return _IMP_core.EdgePairsGeometry___str__(self)
2765 
2766 
2767  def __repr__(self):
2768  """__repr__(EdgePairsGeometry self) -> std::string"""
2769  return _IMP_core.EdgePairsGeometry___repr__(self)
2770 
2771 
2772  @staticmethod
2773  def get_from(o):
2774  return _object_cast_to_EdgePairsGeometry(o)
2775 
2776 EdgePairsGeometry_swigregister = _IMP_core.EdgePairsGeometry_swigregister
2777 EdgePairsGeometry_swigregister(EdgePairsGeometry)
2778 
2779 class Direction(IMP.Decorator):
2780  """Proxy of C++ IMP::core::Direction class."""
2781 
2782  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2783 
2784  def do_setup_particle(m, pi, v):
2785  """do_setup_particle(Model m, ParticleIndex pi, Vector3D v)"""
2786  return _IMP_core.Direction_do_setup_particle(m, pi, v)
2787 
2788  do_setup_particle = staticmethod(do_setup_particle)
2789 
2790  def __init__(self, *args):
2791  """
2792  __init__(IMP::core::Direction self) -> Direction
2793  __init__(IMP::core::Direction self, Model m, ParticleIndex id) -> Direction
2794  __init__(IMP::core::Direction self, _ParticleAdaptor d) -> Direction
2795  """
2796  this = _IMP_core.new_Direction(*args)
2797  try:
2798  self.this.append(this)
2799  except __builtin__.Exception:
2800  self.this = this
2801 
2802  def show(self, *args):
2803  """
2804  show(Direction self, _ostream out)
2805  show(Direction self)
2806  """
2807  return _IMP_core.Direction_show(self, *args)
2808 
2809 
2810  def setup_particle(*args):
2811  """
2812  setup_particle(Model m, ParticleIndex pi, Vector3D v) -> Direction
2813  setup_particle(_ParticleAdaptor decorator, Vector3D v) -> Direction
2814  """
2815  return _IMP_core.Direction_setup_particle(*args)
2816 
2817  setup_particle = staticmethod(setup_particle)
2818 
2819  def get_is_setup(*args):
2820  """
2821  get_is_setup(_ParticleAdaptor p) -> bool
2822  get_is_setup(Model m, ParticleIndex pi) -> bool
2823  """
2824  return _IMP_core.Direction_get_is_setup(*args)
2825 
2826  get_is_setup = staticmethod(get_is_setup)
2827 
2828  def get_direction_key(i):
2829  """get_direction_key(unsigned int i) -> FloatKey"""
2830  return _IMP_core.Direction_get_direction_key(i)
2831 
2832  get_direction_key = staticmethod(get_direction_key)
2833 
2834  def get_direction_derivative(self, i):
2835  """get_direction_derivative(Direction self, int i) -> IMP::Float"""
2836  return _IMP_core.Direction_get_direction_derivative(self, i)
2837 
2838 
2839  def get_direction_derivatives(self):
2840  """get_direction_derivatives(Direction self) -> Vector3D"""
2841  return _IMP_core.Direction_get_direction_derivatives(self)
2842 
2843 
2844  def add_to_direction_derivative(self, i, v, d):
2845  """add_to_direction_derivative(Direction self, int i, IMP::Float v, DerivativeAccumulator d)"""
2846  return _IMP_core.Direction_add_to_direction_derivative(self, i, v, d)
2847 
2848 
2849  def add_to_direction_derivatives(self, v, d):
2850  """add_to_direction_derivatives(Direction self, Vector3D v, DerivativeAccumulator d)"""
2851  return _IMP_core.Direction_add_to_direction_derivatives(self, v, d)
2852 
2853 
2854  def get_direction_is_optimized(self):
2855  """get_direction_is_optimized(Direction self) -> bool"""
2856  return _IMP_core.Direction_get_direction_is_optimized(self)
2857 
2858 
2859  def set_direction_is_optimized(self, tf):
2860  """set_direction_is_optimized(Direction self, bool tf)"""
2861  return _IMP_core.Direction_set_direction_is_optimized(self, tf)
2862 
2863 
2864  def get_direction(self):
2865  """get_direction(Direction self) -> Vector3D"""
2866  return _IMP_core.Direction_get_direction(self)
2867 
2868 
2869  def set_direction(self, v):
2870  """set_direction(Direction self, Vector3D v)"""
2871  return _IMP_core.Direction_set_direction(self, v)
2872 
2873 
2874  def reflect(self):
2875  """reflect(Direction self)"""
2876  return _IMP_core.Direction_reflect(self)
2877 
2878 
2879  def add_attribute(self, *args):
2880  """
2881  add_attribute(Direction self, FloatKey k, IMP::Float v, bool opt)
2882  add_attribute(Direction self, FloatKey a0, IMP::Float a1)
2883  add_attribute(Direction self, IntKey a0, IMP::Int a1)
2884  add_attribute(Direction self, StringKey a0, IMP::String a1)
2885  add_attribute(Direction self, ParticleIndexKey a0, Particle a1)
2886  add_attribute(Direction self, ObjectKey a0, Object a1)
2887  """
2888  return _IMP_core.Direction_add_attribute(self, *args)
2889 
2890 
2891  def get_value(self, *args):
2892  """
2893  get_value(Direction self, FloatKey a0) -> IMP::Float
2894  get_value(Direction self, IntKey a0) -> IMP::Int
2895  get_value(Direction self, StringKey a0) -> IMP::String
2896  get_value(Direction self, ParticleIndexKey a0) -> Particle
2897  get_value(Direction self, ObjectKey a0) -> Object
2898  """
2899  return _IMP_core.Direction_get_value(self, *args)
2900 
2901 
2902  def set_value(self, *args):
2903  """
2904  set_value(Direction self, FloatKey a0, IMP::Float a1)
2905  set_value(Direction self, IntKey a0, IMP::Int a1)
2906  set_value(Direction self, StringKey a0, IMP::String a1)
2907  set_value(Direction self, ParticleIndexKey a0, Particle a1)
2908  set_value(Direction self, ObjectKey a0, Object a1)
2909  """
2910  return _IMP_core.Direction_set_value(self, *args)
2911 
2912 
2913  def remove_attribute(self, *args):
2914  """
2915  remove_attribute(Direction self, FloatKey a0)
2916  remove_attribute(Direction self, IntKey a0)
2917  remove_attribute(Direction self, StringKey a0)
2918  remove_attribute(Direction self, ParticleIndexKey a0)
2919  remove_attribute(Direction self, ObjectKey a0)
2920  """
2921  return _IMP_core.Direction_remove_attribute(self, *args)
2922 
2923 
2924  def has_attribute(self, *args):
2925  """
2926  has_attribute(Direction self, FloatKey a0) -> bool
2927  has_attribute(Direction self, IntKey a0) -> bool
2928  has_attribute(Direction self, StringKey a0) -> bool
2929  has_attribute(Direction self, ParticleIndexKey a0) -> bool
2930  has_attribute(Direction self, ObjectKey a0) -> bool
2931  """
2932  return _IMP_core.Direction_has_attribute(self, *args)
2933 
2934 
2935  def get_derivative(self, a0):
2936  """get_derivative(Direction self, FloatKey a0) -> double"""
2937  return _IMP_core.Direction_get_derivative(self, a0)
2938 
2939 
2940  def get_name(self):
2941  """get_name(Direction self) -> std::string"""
2942  return _IMP_core.Direction_get_name(self)
2943 
2944 
2945  def clear_caches(self):
2946  """clear_caches(Direction self)"""
2947  return _IMP_core.Direction_clear_caches(self)
2948 
2949 
2950  def set_name(self, a0):
2951  """set_name(Direction self, std::string a0)"""
2952  return _IMP_core.Direction_set_name(self, a0)
2953 
2954 
2955  def set_check_level(self, a0):
2956  """set_check_level(Direction self, IMP::CheckLevel a0)"""
2957  return _IMP_core.Direction_set_check_level(self, a0)
2958 
2959 
2960  def add_to_derivative(self, a0, a1, a2):
2961  """add_to_derivative(Direction self, FloatKey a0, double a1, DerivativeAccumulator a2)"""
2962  return _IMP_core.Direction_add_to_derivative(self, a0, a1, a2)
2963 
2964 
2965  def set_is_optimized(self, a0, a1):
2966  """set_is_optimized(Direction self, FloatKey a0, bool a1)"""
2967  return _IMP_core.Direction_set_is_optimized(self, a0, a1)
2968 
2969 
2970  def get_is_optimized(self, a0):
2971  """get_is_optimized(Direction self, FloatKey a0) -> bool"""
2972  return _IMP_core.Direction_get_is_optimized(self, a0)
2973 
2974 
2975  def get_check_level(self):
2976  """get_check_level(Direction self) -> IMP::CheckLevel"""
2977  return _IMP_core.Direction_get_check_level(self)
2978 
2979 
2980  def __eq__(self, *args):
2981  """
2982  __eq__(Direction self, Direction o) -> bool
2983  __eq__(Direction self, Particle d) -> bool
2984  """
2985  return _IMP_core.Direction___eq__(self, *args)
2986 
2987 
2988  def __ne__(self, *args):
2989  """
2990  __ne__(Direction self, Direction o) -> bool
2991  __ne__(Direction self, Particle d) -> bool
2992  """
2993  return _IMP_core.Direction___ne__(self, *args)
2994 
2995 
2996  def __le__(self, *args):
2997  """
2998  __le__(Direction self, Direction o) -> bool
2999  __le__(Direction self, Particle d) -> bool
3000  """
3001  return _IMP_core.Direction___le__(self, *args)
3002 
3003 
3004  def __lt__(self, *args):
3005  """
3006  __lt__(Direction self, Direction o) -> bool
3007  __lt__(Direction self, Particle d) -> bool
3008  """
3009  return _IMP_core.Direction___lt__(self, *args)
3010 
3011 
3012  def __ge__(self, *args):
3013  """
3014  __ge__(Direction self, Direction o) -> bool
3015  __ge__(Direction self, Particle d) -> bool
3016  """
3017  return _IMP_core.Direction___ge__(self, *args)
3018 
3019 
3020  def __gt__(self, *args):
3021  """
3022  __gt__(Direction self, Direction o) -> bool
3023  __gt__(Direction self, Particle d) -> bool
3024  """
3025  return _IMP_core.Direction___gt__(self, *args)
3026 
3027 
3028  def __hash__(self):
3029  """__hash__(Direction self) -> std::size_t"""
3030  return _IMP_core.Direction___hash__(self)
3031 
3032 
3033  def __str__(self):
3034  """__str__(Direction self) -> std::string"""
3035  return _IMP_core.Direction___str__(self)
3036 
3037 
3038  def __repr__(self):
3039  """__repr__(Direction self) -> std::string"""
3040  return _IMP_core.Direction___repr__(self)
3041 
3042  __swig_destroy__ = _IMP_core.delete_Direction
3043  __del__ = lambda self: None
3044 Direction_swigregister = _IMP_core.Direction_swigregister
3045 Direction_swigregister(Direction)
3046 
3047 def Direction_do_setup_particle(m, pi, v):
3048  """Direction_do_setup_particle(Model m, ParticleIndex pi, Vector3D v)"""
3049  return _IMP_core.Direction_do_setup_particle(m, pi, v)
3050 
3051 def Direction_setup_particle(*args):
3052  """
3053  setup_particle(Model m, ParticleIndex pi, Vector3D v) -> Direction
3054  Direction_setup_particle(_ParticleAdaptor decorator, Vector3D v) -> Direction
3055  """
3056  return _IMP_core.Direction_setup_particle(*args)
3057 
3058 def Direction_get_is_setup(*args):
3059  """
3060  get_is_setup(_ParticleAdaptor p) -> bool
3061  Direction_get_is_setup(Model m, ParticleIndex pi) -> bool
3062  """
3063  return _IMP_core.Direction_get_is_setup(*args)
3064 
3065 def Direction_get_direction_key(i):
3066  """Direction_get_direction_key(unsigned int i) -> FloatKey"""
3067  return _IMP_core.Direction_get_direction_key(i)
3068 
3069 
3070 def get_angle(a, b):
3071  """get_angle(Direction a, Direction b) -> double"""
3072  return _IMP_core.get_angle(a, b)
3073 class DirectionAngle(IMP.Decorator):
3074  """Proxy of C++ IMP::core::DirectionAngle class."""
3075 
3076  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
3077 
3078  def __init__(self, *args):
3079  """
3080  __init__(IMP::core::DirectionAngle self) -> DirectionAngle
3081  __init__(IMP::core::DirectionAngle self, Model m, ParticleIndex id) -> DirectionAngle
3082  __init__(IMP::core::DirectionAngle self, _ParticleAdaptor d) -> DirectionAngle
3083  """
3084  this = _IMP_core.new_DirectionAngle(*args)
3085  try:
3086  self.this.append(this)
3087  except __builtin__.Exception:
3088  self.this = this
3089 
3090  def show(self, *args):
3091  """
3092  show(DirectionAngle self, _ostream out)
3093  show(DirectionAngle self)
3094  """
3095  return _IMP_core.DirectionAngle_show(self, *args)
3096 
3097 
3098  def setup_particle(*args):
3099  """
3100  setup_particle(Model m, ParticleIndex pi, IMP::ParticleIndexPair ds) -> DirectionAngle
3101  setup_particle(_ParticleAdaptor decorator, IMP::ParticleIndexPair ds) -> DirectionAngle
3102  setup_particle(Model m, ParticleIndex pi, _ParticleIndexAdaptor d0, _ParticleIndexAdaptor d1) -> DirectionAngle
3103  setup_particle(_ParticleAdaptor decorator, _ParticleIndexAdaptor d0, _ParticleIndexAdaptor d1) -> DirectionAngle
3104  """
3105  return _IMP_core.DirectionAngle_setup_particle(*args)
3106 
3107  setup_particle = staticmethod(setup_particle)
3108 
3109  def get_is_setup(*args):
3110  """
3111  get_is_setup(_ParticleAdaptor p) -> bool
3112  get_is_setup(Model m, ParticleIndex pi) -> bool
3113  """
3114  return _IMP_core.DirectionAngle_get_is_setup(*args)
3115 
3116  get_is_setup = staticmethod(get_is_setup)
3117 
3118  def get_angle_key():
3119  """get_angle_key() -> FloatKey"""
3120  return _IMP_core.DirectionAngle_get_angle_key()
3121 
3122  get_angle_key = staticmethod(get_angle_key)
3123 
3124  def get_particle_key(i):
3125  """get_particle_key(unsigned int i) -> ParticleIndexKey"""
3126  return _IMP_core.DirectionAngle_get_particle_key(i)
3127 
3128  get_particle_key = staticmethod(get_particle_key)
3129 
3130  def get_particle(self, *args):
3131  """
3132  get_particle(DirectionAngle self, unsigned int i) -> Particle
3133  get_particle(DirectionAngle self) -> Particle
3134  """
3135  return _IMP_core.DirectionAngle_get_particle(self, *args)
3136 
3137 
3138  def get_particle_index(self, *args):
3139  """
3140  get_particle_index(DirectionAngle self, unsigned int i) -> ParticleIndex
3141  get_particle_index(DirectionAngle self) -> ParticleIndex
3142  """
3143  return _IMP_core.DirectionAngle_get_particle_index(self, *args)
3144 
3145 
3146  def get_angle(self):
3147  """get_angle(DirectionAngle self) -> IMP::Float"""
3148  return _IMP_core.DirectionAngle_get_angle(self)
3149 
3150 
3151  def get_angle_derivative(self):
3152  """get_angle_derivative(DirectionAngle self) -> IMP::Float"""
3153  return _IMP_core.DirectionAngle_get_angle_derivative(self)
3154 
3155 
3156  def add_to_angle_derivative(self, v, d):
3157  """add_to_angle_derivative(DirectionAngle self, IMP::Float v, DerivativeAccumulator d)"""
3158  return _IMP_core.DirectionAngle_add_to_angle_derivative(self, v, d)
3159 
3160 
3161  def add_attribute(self, *args):
3162  """
3163  add_attribute(DirectionAngle self, FloatKey k, IMP::Float v, bool opt)
3164  add_attribute(DirectionAngle self, FloatKey a0, IMP::Float a1)
3165  add_attribute(DirectionAngle self, IntKey a0, IMP::Int a1)
3166  add_attribute(DirectionAngle self, StringKey a0, IMP::String a1)
3167  add_attribute(DirectionAngle self, ParticleIndexKey a0, Particle a1)
3168  add_attribute(DirectionAngle self, ObjectKey a0, Object a1)
3169  """
3170  return _IMP_core.DirectionAngle_add_attribute(self, *args)
3171 
3172 
3173  def get_value(self, *args):
3174  """
3175  get_value(DirectionAngle self, FloatKey a0) -> IMP::Float
3176  get_value(DirectionAngle self, IntKey a0) -> IMP::Int
3177  get_value(DirectionAngle self, StringKey a0) -> IMP::String
3178  get_value(DirectionAngle self, ParticleIndexKey a0) -> Particle
3179  get_value(DirectionAngle self, ObjectKey a0) -> Object
3180  """
3181  return _IMP_core.DirectionAngle_get_value(self, *args)
3182 
3183 
3184  def set_value(self, *args):
3185  """
3186  set_value(DirectionAngle self, FloatKey a0, IMP::Float a1)
3187  set_value(DirectionAngle self, IntKey a0, IMP::Int a1)
3188  set_value(DirectionAngle self, StringKey a0, IMP::String a1)
3189  set_value(DirectionAngle self, ParticleIndexKey a0, Particle a1)
3190  set_value(DirectionAngle self, ObjectKey a0, Object a1)
3191  """
3192  return _IMP_core.DirectionAngle_set_value(self, *args)
3193 
3194 
3195  def remove_attribute(self, *args):
3196  """
3197  remove_attribute(DirectionAngle self, FloatKey a0)
3198  remove_attribute(DirectionAngle self, IntKey a0)
3199  remove_attribute(DirectionAngle self, StringKey a0)
3200  remove_attribute(DirectionAngle self, ParticleIndexKey a0)
3201  remove_attribute(DirectionAngle self, ObjectKey a0)
3202  """
3203  return _IMP_core.DirectionAngle_remove_attribute(self, *args)
3204 
3205 
3206  def has_attribute(self, *args):
3207  """
3208  has_attribute(DirectionAngle self, FloatKey a0) -> bool
3209  has_attribute(DirectionAngle self, IntKey a0) -> bool
3210  has_attribute(DirectionAngle self, StringKey a0) -> bool
3211  has_attribute(DirectionAngle self, ParticleIndexKey a0) -> bool
3212  has_attribute(DirectionAngle self, ObjectKey a0) -> bool
3213  """
3214  return _IMP_core.DirectionAngle_has_attribute(self, *args)
3215 
3216 
3217  def get_derivative(self, a0):
3218  """get_derivative(DirectionAngle self, FloatKey a0) -> double"""
3219  return _IMP_core.DirectionAngle_get_derivative(self, a0)
3220 
3221 
3222  def get_name(self):
3223  """get_name(DirectionAngle self) -> std::string"""
3224  return _IMP_core.DirectionAngle_get_name(self)
3225 
3226 
3227  def clear_caches(self):
3228  """clear_caches(DirectionAngle self)"""
3229  return _IMP_core.DirectionAngle_clear_caches(self)
3230 
3231 
3232  def set_name(self, a0):
3233  """set_name(DirectionAngle self, std::string a0)"""
3234  return _IMP_core.DirectionAngle_set_name(self, a0)
3235 
3236 
3237  def set_check_level(self, a0):
3238  """set_check_level(DirectionAngle self, IMP::CheckLevel a0)"""
3239  return _IMP_core.DirectionAngle_set_check_level(self, a0)
3240 
3241 
3242  def add_to_derivative(self, a0, a1, a2):
3243  """add_to_derivative(DirectionAngle self, FloatKey a0, double a1, DerivativeAccumulator a2)"""
3244  return _IMP_core.DirectionAngle_add_to_derivative(self, a0, a1, a2)
3245 
3246 
3247  def set_is_optimized(self, a0, a1):
3248  """set_is_optimized(DirectionAngle self, FloatKey a0, bool a1)"""
3249  return _IMP_core.DirectionAngle_set_is_optimized(self, a0, a1)
3250 
3251 
3252  def get_is_optimized(self, a0):
3253  """get_is_optimized(DirectionAngle self, FloatKey a0) -> bool"""
3254  return _IMP_core.DirectionAngle_get_is_optimized(self, a0)
3255 
3256 
3257  def get_check_level(self):
3258  """get_check_level(DirectionAngle self) -> IMP::CheckLevel"""
3259  return _IMP_core.DirectionAngle_get_check_level(self)
3260 
3261 
3262  def __eq__(self, *args):
3263  """
3264  __eq__(DirectionAngle self, DirectionAngle o) -> bool
3265  __eq__(DirectionAngle self, Particle d) -> bool
3266  """
3267  return _IMP_core.DirectionAngle___eq__(self, *args)
3268 
3269 
3270  def __ne__(self, *args):
3271  """
3272  __ne__(DirectionAngle self, DirectionAngle o) -> bool
3273  __ne__(DirectionAngle self, Particle d) -> bool
3274  """
3275  return _IMP_core.DirectionAngle___ne__(self, *args)
3276 
3277 
3278  def __le__(self, *args):
3279  """
3280  __le__(DirectionAngle self, DirectionAngle o) -> bool
3281  __le__(DirectionAngle self, Particle d) -> bool
3282  """
3283  return _IMP_core.DirectionAngle___le__(self, *args)
3284 
3285 
3286  def __lt__(self, *args):
3287  """
3288  __lt__(DirectionAngle self, DirectionAngle o) -> bool
3289  __lt__(DirectionAngle self, Particle d) -> bool
3290  """
3291  return _IMP_core.DirectionAngle___lt__(self, *args)
3292 
3293 
3294  def __ge__(self, *args):
3295  """
3296  __ge__(DirectionAngle self, DirectionAngle o) -> bool
3297  __ge__(DirectionAngle self, Particle d) -> bool
3298  """
3299  return _IMP_core.DirectionAngle___ge__(self, *args)
3300 
3301 
3302  def __gt__(self, *args):
3303  """
3304  __gt__(DirectionAngle self, DirectionAngle o) -> bool
3305  __gt__(DirectionAngle self, Particle d) -> bool
3306  """
3307  return _IMP_core.DirectionAngle___gt__(self, *args)
3308 
3309 
3310  def __hash__(self):
3311  """__hash__(DirectionAngle self) -> std::size_t"""
3312  return _IMP_core.DirectionAngle___hash__(self)
3313 
3314 
3315  def __str__(self):
3316  """__str__(DirectionAngle self) -> std::string"""
3317  return _IMP_core.DirectionAngle___str__(self)
3318 
3319 
3320  def __repr__(self):
3321  """__repr__(DirectionAngle self) -> std::string"""
3322  return _IMP_core.DirectionAngle___repr__(self)
3323 
3324  __swig_destroy__ = _IMP_core.delete_DirectionAngle
3325  __del__ = lambda self: None
3326 DirectionAngle_swigregister = _IMP_core.DirectionAngle_swigregister
3327 DirectionAngle_swigregister(DirectionAngle)
3328 
3329 def DirectionAngle_setup_particle(*args):
3330  """
3331  setup_particle(Model m, ParticleIndex pi, IMP::ParticleIndexPair ds) -> DirectionAngle
3332  setup_particle(_ParticleAdaptor decorator, IMP::ParticleIndexPair ds) -> DirectionAngle
3333  setup_particle(Model m, ParticleIndex pi, _ParticleIndexAdaptor d0, _ParticleIndexAdaptor d1) -> DirectionAngle
3334  DirectionAngle_setup_particle(_ParticleAdaptor decorator, _ParticleIndexAdaptor d0, _ParticleIndexAdaptor d1) -> DirectionAngle
3335  """
3336  return _IMP_core.DirectionAngle_setup_particle(*args)
3337 
3338 def DirectionAngle_get_is_setup(*args):
3339  """
3340  get_is_setup(_ParticleAdaptor p) -> bool
3341  DirectionAngle_get_is_setup(Model m, ParticleIndex pi) -> bool
3342  """
3343  return _IMP_core.DirectionAngle_get_is_setup(*args)
3344 
3345 def DirectionAngle_get_angle_key():
3346  """DirectionAngle_get_angle_key() -> FloatKey"""
3347  return _IMP_core.DirectionAngle_get_angle_key()
3348 
3349 def DirectionAngle_get_particle_key(i):
3350  """DirectionAngle_get_particle_key(unsigned int i) -> ParticleIndexKey"""
3351  return _IMP_core.DirectionAngle_get_particle_key(i)
3352 
3353 class Surface(XYZ):
3354  """Proxy of C++ IMP::core::Surface class."""
3355 
3356  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
3357 
3358  def do_setup_particle(*args):
3359  """
3360  do_setup_particle(Model m, ParticleIndex pi, Vector3D center, Vector3D normal)
3361  do_setup_particle(Model m, ParticleIndex pi, Vector3D center)
3362  do_setup_particle(Model m, ParticleIndex pi)
3363  do_setup_particle(Model m, ParticleIndex pi, ReferenceFrame3D rf)
3364  """
3365  return _IMP_core.Surface_do_setup_particle(*args)
3366 
3367  do_setup_particle = staticmethod(do_setup_particle)
3368 
3369  def __init__(self, *args):
3370  """
3371  __init__(IMP::core::Surface self) -> Surface
3372  __init__(IMP::core::Surface self, Model m, ParticleIndex id) -> Surface
3373  __init__(IMP::core::Surface self, _ParticleAdaptor d) -> Surface
3374  """
3375  this = _IMP_core.new_Surface(*args)
3376  try:
3377  self.this.append(this)
3378  except __builtin__.Exception:
3379  self.this = this
3380 
3381  def show(self, *args):
3382  """
3383  show(Surface self, _ostream out)
3384  show(Surface self)
3385  """
3386  return _IMP_core.Surface_show(self, *args)
3387 
3388 
3389  def setup_particle(*args):
3390  """
3391  setup_particle(Model m, ParticleIndex pi) -> Surface
3392  setup_particle(_ParticleAdaptor decorator) -> Surface
3393  setup_particle(Model m, ParticleIndex pi, ReferenceFrame3D rf) -> Surface
3394  setup_particle(_ParticleAdaptor decorator, ReferenceFrame3D rf) -> Surface
3395  setup_particle(Model m, ParticleIndex pi, Vector3D center) -> Surface
3396  setup_particle(_ParticleAdaptor decorator, Vector3D center) -> Surface
3397  setup_particle(Model m, ParticleIndex pi, Vector3D center, Vector3D normal) -> Surface
3398  setup_particle(_ParticleAdaptor decorator, Vector3D center, Vector3D normal) -> Surface
3399  """
3400  return _IMP_core.Surface_setup_particle(*args)
3401 
3402  setup_particle = staticmethod(setup_particle)
3403 
3404  def get_normal_x(self):
3405  """get_normal_x(Surface self) -> IMP::Float"""
3406  return _IMP_core.Surface_get_normal_x(self)
3407 
3408 
3409  def set_normal_x(self, t):
3410  """set_normal_x(Surface self, IMP::Float t)"""
3411  return _IMP_core.Surface_set_normal_x(self, t)
3412 
3413 
3414  def get_normal_y(self):
3415  """get_normal_y(Surface self) -> IMP::Float"""
3416  return _IMP_core.Surface_get_normal_y(self)
3417 
3418 
3419  def set_normal_y(self, t):
3420  """set_normal_y(Surface self, IMP::Float t)"""
3421  return _IMP_core.Surface_set_normal_y(self, t)
3422 
3423 
3424  def get_normal_z(self):
3425  """get_normal_z(Surface self) -> IMP::Float"""
3426  return _IMP_core.Surface_get_normal_z(self)
3427 
3428 
3429  def set_normal_z(self, t):
3430  """set_normal_z(Surface self, IMP::Float t)"""
3431  return _IMP_core.Surface_set_normal_z(self, t)
3432 
3433 
3434  def get_is_setup(*args):
3435  """
3436  get_is_setup(_ParticleAdaptor p) -> bool
3437  get_is_setup(Model m, ParticleIndex pi) -> bool
3438  """
3439  return _IMP_core.Surface_get_is_setup(*args)
3440 
3441  get_is_setup = staticmethod(get_is_setup)
3442 
3443  def get_normal_key(i):
3444  """get_normal_key(unsigned int i) -> FloatKey"""
3445  return _IMP_core.Surface_get_normal_key(i)
3446 
3447  get_normal_key = staticmethod(get_normal_key)
3448 
3449  def get_normal_derivative(self, i):
3450  """get_normal_derivative(Surface self, int i) -> IMP::Float"""
3451  return _IMP_core.Surface_get_normal_derivative(self, i)
3452 
3453 
3454  def get_normal_derivatives(self):
3455  """get_normal_derivatives(Surface self) -> Vector3D"""
3456  return _IMP_core.Surface_get_normal_derivatives(self)
3457 
3458 
3459  def add_to_normal_derivative(self, i, v, d):
3460  """add_to_normal_derivative(Surface self, int i, IMP::Float v, DerivativeAccumulator d)"""
3461  return _IMP_core.Surface_add_to_normal_derivative(self, i, v, d)
3462 
3463 
3464  def add_to_normal_derivatives(self, v, d):
3465  """add_to_normal_derivatives(Surface self, Vector3D v, DerivativeAccumulator d)"""
3466  return _IMP_core.Surface_add_to_normal_derivatives(self, v, d)
3467 
3468 
3469  def get_normal_is_optimized(self):
3470  """get_normal_is_optimized(Surface self) -> bool"""
3471  return _IMP_core.Surface_get_normal_is_optimized(self)
3472 
3473 
3474  def set_normal_is_optimized(self, tf):
3475  """set_normal_is_optimized(Surface self, bool tf)"""
3476  return _IMP_core.Surface_set_normal_is_optimized(self, tf)
3477 
3478 
3479  def get_normal(self):
3480  """get_normal(Surface self) -> Vector3D"""
3481  return _IMP_core.Surface_get_normal(self)
3482 
3483 
3484  def set_normal(self, normal):
3485  """set_normal(Surface self, Vector3D normal)"""
3486  return _IMP_core.Surface_set_normal(self, normal)
3487 
3488 
3489  def reflect(self):
3490  """reflect(Surface self)"""
3491  return _IMP_core.Surface_reflect(self)
3492 
3493 
3494  def get_height(self, v):
3495  """get_height(Surface self, Vector3D v) -> double"""
3496  return _IMP_core.Surface_get_height(self, v)
3497 
3498 
3499  def get_depth(self, v):
3500  """get_depth(Surface self, Vector3D v) -> double"""
3501  return _IMP_core.Surface_get_depth(self, v)
3502 
3503 
3504  def get_distance_to(self, v):
3505  """get_distance_to(Surface self, Vector3D v) -> double"""
3506  return _IMP_core.Surface_get_distance_to(self, v)
3507 
3508 
3509  def get_distance_to_center(self, v):
3510  """get_distance_to_center(Surface self, Vector3D v) -> double"""
3511  return _IMP_core.Surface_get_distance_to_center(self, v)
3512 
3513 
3514  def set_reference_frame(self, rf):
3515  """set_reference_frame(Surface self, ReferenceFrame3D rf)"""
3516  return _IMP_core.Surface_set_reference_frame(self, rf)
3517 
3518 
3519  def get_reference_frame(self):
3520  """get_reference_frame(Surface self) -> ReferenceFrame3D"""
3521  return _IMP_core.Surface_get_reference_frame(self)
3522 
3523 
3524  def get_plane(self):
3525  """get_plane(Surface self) -> Plane3D"""
3526  return _IMP_core.Surface_get_plane(self)
3527 
3528 
3529  def add_attribute(self, *args):
3530  """
3531  add_attribute(Surface self, FloatKey k, IMP::Float v, bool opt)
3532  add_attribute(Surface self, FloatKey a0, IMP::Float a1)
3533  add_attribute(Surface self, IntKey a0, IMP::Int a1)
3534  add_attribute(Surface self, StringKey a0, IMP::String a1)
3535  add_attribute(Surface self, ParticleIndexKey a0, Particle a1)
3536  add_attribute(Surface self, ObjectKey a0, Object a1)
3537  """
3538  return _IMP_core.Surface_add_attribute(self, *args)
3539 
3540 
3541  def get_value(self, *args):
3542  """
3543  get_value(Surface self, FloatKey a0) -> IMP::Float
3544  get_value(Surface self, IntKey a0) -> IMP::Int
3545  get_value(Surface self, StringKey a0) -> IMP::String
3546  get_value(Surface self, ParticleIndexKey a0) -> Particle
3547  get_value(Surface self, ObjectKey a0) -> Object
3548  """
3549  return _IMP_core.Surface_get_value(self, *args)
3550 
3551 
3552  def set_value(self, *args):
3553  """
3554  set_value(Surface self, FloatKey a0, IMP::Float a1)
3555  set_value(Surface self, IntKey a0, IMP::Int a1)
3556  set_value(Surface self, StringKey a0, IMP::String a1)
3557  set_value(Surface self, ParticleIndexKey a0, Particle a1)
3558  set_value(Surface self, ObjectKey a0, Object a1)
3559  """
3560  return _IMP_core.Surface_set_value(self, *args)
3561 
3562 
3563  def remove_attribute(self, *args):
3564  """
3565  remove_attribute(Surface self, FloatKey a0)
3566  remove_attribute(Surface self, IntKey a0)
3567  remove_attribute(Surface self, StringKey a0)
3568  remove_attribute(Surface self, ParticleIndexKey a0)
3569  remove_attribute(Surface self, ObjectKey a0)
3570  """
3571  return _IMP_core.Surface_remove_attribute(self, *args)
3572 
3573 
3574  def has_attribute(self, *args):
3575  """
3576  has_attribute(Surface self, FloatKey a0) -> bool
3577  has_attribute(Surface self, IntKey a0) -> bool
3578  has_attribute(Surface self, StringKey a0) -> bool
3579  has_attribute(Surface self, ParticleIndexKey a0) -> bool
3580  has_attribute(Surface self, ObjectKey a0) -> bool
3581  """
3582  return _IMP_core.Surface_has_attribute(self, *args)
3583 
3584 
3585  def get_derivative(self, a0):
3586  """get_derivative(Surface self, FloatKey a0) -> double"""
3587  return _IMP_core.Surface_get_derivative(self, a0)
3588 
3589 
3590  def get_name(self):
3591  """get_name(Surface self) -> std::string"""
3592  return _IMP_core.Surface_get_name(self)
3593 
3594 
3595  def clear_caches(self):
3596  """clear_caches(Surface self)"""
3597  return _IMP_core.Surface_clear_caches(self)
3598 
3599 
3600  def set_name(self, a0):
3601  """set_name(Surface self, std::string a0)"""
3602  return _IMP_core.Surface_set_name(self, a0)
3603 
3604 
3605  def set_check_level(self, a0):
3606  """set_check_level(Surface self, IMP::CheckLevel a0)"""
3607  return _IMP_core.Surface_set_check_level(self, a0)
3608 
3609 
3610  def add_to_derivative(self, a0, a1, a2):
3611  """add_to_derivative(Surface self, FloatKey a0, double a1, DerivativeAccumulator a2)"""
3612  return _IMP_core.Surface_add_to_derivative(self, a0, a1, a2)
3613 
3614 
3615  def set_is_optimized(self, a0, a1):
3616  """set_is_optimized(Surface self, FloatKey a0, bool a1)"""
3617  return _IMP_core.Surface_set_is_optimized(self, a0, a1)
3618 
3619 
3620  def get_is_optimized(self, a0):
3621  """get_is_optimized(Surface self, FloatKey a0) -> bool"""
3622  return _IMP_core.Surface_get_is_optimized(self, a0)
3623 
3624 
3625  def get_check_level(self):
3626  """get_check_level(Surface self) -> IMP::CheckLevel"""
3627  return _IMP_core.Surface_get_check_level(self)
3628 
3629 
3630  def __eq__(self, *args):
3631  """
3632  __eq__(Surface self, Surface o) -> bool
3633  __eq__(Surface self, Particle d) -> bool
3634  """
3635  return _IMP_core.Surface___eq__(self, *args)
3636 
3637 
3638  def __ne__(self, *args):
3639  """
3640  __ne__(Surface self, Surface o) -> bool
3641  __ne__(Surface self, Particle d) -> bool
3642  """
3643  return _IMP_core.Surface___ne__(self, *args)
3644 
3645 
3646  def __le__(self, *args):
3647  """
3648  __le__(Surface self, Surface o) -> bool
3649  __le__(Surface self, Particle d) -> bool
3650  """
3651  return _IMP_core.Surface___le__(self, *args)
3652 
3653 
3654  def __lt__(self, *args):
3655  """
3656  __lt__(Surface self, Surface o) -> bool
3657  __lt__(Surface self, Particle d) -> bool
3658  """
3659  return _IMP_core.Surface___lt__(self, *args)
3660 
3661 
3662  def __ge__(self, *args):
3663  """
3664  __ge__(Surface self, Surface o) -> bool
3665  __ge__(Surface self, Particle d) -> bool
3666  """
3667  return _IMP_core.Surface___ge__(self, *args)
3668 
3669 
3670  def __gt__(self, *args):
3671  """
3672  __gt__(Surface self, Surface o) -> bool
3673  __gt__(Surface self, Particle d) -> bool
3674  """
3675  return _IMP_core.Surface___gt__(self, *args)
3676 
3677 
3678  def __hash__(self):
3679  """__hash__(Surface self) -> std::size_t"""
3680  return _IMP_core.Surface___hash__(self)
3681 
3682 
3683  def __str__(self):
3684  """__str__(Surface self) -> std::string"""
3685  return _IMP_core.Surface___str__(self)
3686 
3687 
3688  def __repr__(self):
3689  """__repr__(Surface self) -> std::string"""
3690  return _IMP_core.Surface___repr__(self)
3691 
3692  __swig_destroy__ = _IMP_core.delete_Surface
3693  __del__ = lambda self: None
3694 Surface_swigregister = _IMP_core.Surface_swigregister
3695 Surface_swigregister(Surface)
3696 
3697 def Surface_do_setup_particle(*args):
3698  """
3699  do_setup_particle(Model m, ParticleIndex pi, Vector3D center, Vector3D normal)
3700  do_setup_particle(Model m, ParticleIndex pi, Vector3D center)
3701  do_setup_particle(Model m, ParticleIndex pi)
3702  Surface_do_setup_particle(Model m, ParticleIndex pi, ReferenceFrame3D rf)
3703  """
3704  return _IMP_core.Surface_do_setup_particle(*args)
3705 
3706 def Surface_setup_particle(*args):
3707  """
3708  setup_particle(Model m, ParticleIndex pi) -> Surface
3709  setup_particle(_ParticleAdaptor decorator) -> Surface
3710  setup_particle(Model m, ParticleIndex pi, ReferenceFrame3D rf) -> Surface
3711  setup_particle(_ParticleAdaptor decorator, ReferenceFrame3D rf) -> Surface
3712  setup_particle(Model m, ParticleIndex pi, Vector3D center) -> Surface
3713  setup_particle(_ParticleAdaptor decorator, Vector3D center) -> Surface
3714  setup_particle(Model m, ParticleIndex pi, Vector3D center, Vector3D normal) -> Surface
3715  Surface_setup_particle(_ParticleAdaptor decorator, Vector3D center, Vector3D normal) -> Surface
3716  """
3717  return _IMP_core.Surface_setup_particle(*args)
3718 
3719 def Surface_get_is_setup(*args):
3720  """
3721  get_is_setup(_ParticleAdaptor p) -> bool
3722  Surface_get_is_setup(Model m, ParticleIndex pi) -> bool
3723  """
3724  return _IMP_core.Surface_get_is_setup(*args)
3725 
3726 def Surface_get_normal_key(i):
3727  """Surface_get_normal_key(unsigned int i) -> FloatKey"""
3728  return _IMP_core.Surface_get_normal_key(i)
3729 
3730 
3731 def get_height(*args):
3732  """
3733  get_height(Surface s, XYZR d) -> double
3734  get_height(Surface s, XYZ d) -> double
3735  """
3736  return _IMP_core.get_height(*args)
3737 
3738 def get_depth(*args):
3739  """
3740  get_depth(Surface s, XYZR d) -> double
3741  get_depth(Surface s, XYZ d) -> double
3742  """
3743  return _IMP_core.get_depth(*args)
3744 
3745 def get_distance(*args):
3746  """
3747  get_distance(XYZ a, XYZ b) -> double
3748  get_distance(XYZR a, XYZR b) -> double
3749  get_distance(Surface s, XYZR d) -> double
3750  get_distance(Surface s, XYZ d) -> double
3751  """
3752  return _IMP_core.get_distance(*args)
3753 class SurfaceGeometry(IMP.display.Geometry):
3754  """Proxy of C++ IMP::core::SurfaceGeometry class."""
3755 
3756  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
3757 
3758  def __init__(self, *args):
3759  """
3760  __init__(IMP::core::SurfaceGeometry self, std::string n) -> SurfaceGeometry
3761  __init__(IMP::core::SurfaceGeometry self) -> SurfaceGeometry
3762  __init__(IMP::core::SurfaceGeometry self, Surface s, std::string const n) -> SurfaceGeometry
3763  __init__(IMP::core::SurfaceGeometry self, Surface s) -> SurfaceGeometry
3764  __init__(IMP::core::SurfaceGeometry self, Surface s, Color c, std::string n) -> SurfaceGeometry
3765  __init__(IMP::core::SurfaceGeometry self, Surface s, Color c) -> SurfaceGeometry
3766  """
3767  this = _IMP_core.new_SurfaceGeometry(*args)
3768  try:
3769  self.this.append(this)
3770  except __builtin__.Exception:
3771  self.this = this
3772 
3773  def get_geometry(self):
3774  """get_geometry(SurfaceGeometry self) -> Surface"""
3775  return _IMP_core.SurfaceGeometry_get_geometry(self)
3776 
3777 
3778  def set_geometry(self, s):
3779  """set_geometry(SurfaceGeometry self, Surface s)"""
3780  return _IMP_core.SurfaceGeometry_set_geometry(self, s)
3781 
3782 
3783  def get_version_info(self):
3784  """get_version_info(SurfaceGeometry self) -> VersionInfo"""
3785  return _IMP_core.SurfaceGeometry_get_version_info(self)
3786 
3787 
3788  def __str__(self):
3789  """__str__(SurfaceGeometry self) -> std::string"""
3790  return _IMP_core.SurfaceGeometry___str__(self)
3791 
3792 
3793  def __repr__(self):
3794  """__repr__(SurfaceGeometry self) -> std::string"""
3795  return _IMP_core.SurfaceGeometry___repr__(self)
3796 
3797 
3798  @staticmethod
3799  def get_from(o):
3800  return _object_cast_to_SurfaceGeometry(o)
3801 
3802 SurfaceGeometry_swigregister = _IMP_core.SurfaceGeometry_swigregister
3803 SurfaceGeometry_swigregister(SurfaceGeometry)
3804 
3805 
3806 def create_geometry(*args):
3807  """
3808  create_geometry(Surface s, std::string name) -> SurfaceGeometry
3809  create_geometry(Surface s) -> SurfaceGeometry
3810  """
3811  return _IMP_core.create_geometry(*args)
3812 class SurfaceGeometryConstraint(IMP.Constraint):
3813  """Proxy of C++ IMP::core::SurfaceGeometryConstraint class."""
3814 
3815  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
3816 
3817  def __init__(self, s, g):
3818  """__init__(IMP::core::SurfaceGeometryConstraint self, Surface s, SurfaceGeometry g) -> SurfaceGeometryConstraint"""
3819  this = _IMP_core.new_SurfaceGeometryConstraint(s, g)
3820  try:
3821  self.this.append(this)
3822  except __builtin__.Exception:
3823  self.this = this
3824 
3825  def get_surface(self):
3826  """get_surface(SurfaceGeometryConstraint self) -> Surface"""
3827  return _IMP_core.SurfaceGeometryConstraint_get_surface(self)
3828 
3829 
3830  def get_geometry(self):
3831  """get_geometry(SurfaceGeometryConstraint self) -> SurfaceGeometry"""
3832  return _IMP_core.SurfaceGeometryConstraint_get_geometry(self)
3833 
3834 
3835  def do_get_inputs(self):
3836  """do_get_inputs(SurfaceGeometryConstraint self) -> IMP::ModelObjectsTemp"""
3837  return _IMP_core.SurfaceGeometryConstraint_do_get_inputs(self)
3838 
3839 
3840  def do_get_outputs(self):
3841  """do_get_outputs(SurfaceGeometryConstraint self) -> IMP::ModelObjectsTemp"""
3842  return _IMP_core.SurfaceGeometryConstraint_do_get_outputs(self)
3843 
3844 
3845  def get_version_info(self):
3846  """get_version_info(SurfaceGeometryConstraint self) -> VersionInfo"""
3847  return _IMP_core.SurfaceGeometryConstraint_get_version_info(self)
3848 
3849 
3850  def __str__(self):
3851  """__str__(SurfaceGeometryConstraint self) -> std::string"""
3852  return _IMP_core.SurfaceGeometryConstraint___str__(self)
3853 
3854 
3855  def __repr__(self):
3856  """__repr__(SurfaceGeometryConstraint self) -> std::string"""
3857  return _IMP_core.SurfaceGeometryConstraint___repr__(self)
3858 
3859 
3860  @staticmethod
3861  def get_from(o):
3862  return _object_cast_to_SurfaceGeometryConstraint(o)
3863 
3864 SurfaceGeometryConstraint_swigregister = _IMP_core.SurfaceGeometryConstraint_swigregister
3865 SurfaceGeometryConstraint_swigregister(SurfaceGeometryConstraint)
3866 
3867 
3869  """
3870  get_constrained_surface_geometry(Surface s, std::string name) -> SurfaceGeometry
3871  get_constrained_surface_geometry(Surface s) -> SurfaceGeometry
3872  """
3873  return _IMP_core.get_constrained_surface_geometry(*args)
3874 class LateralSurfaceConstraint(IMP.Constraint):
3875  """Proxy of C++ IMP::core::LateralSurfaceConstraint class."""
3876 
3877  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
3878 
3879  def __init__(self, s, d):
3880  """__init__(IMP::core::LateralSurfaceConstraint self, Surface s, XYZ d) -> LateralSurfaceConstraint"""
3881  this = _IMP_core.new_LateralSurfaceConstraint(s, d)
3882  try:
3883  self.this.append(this)
3884  except __builtin__.Exception:
3885  self.this = this
3886 
3887  def do_get_inputs(self):
3888  """do_get_inputs(LateralSurfaceConstraint self) -> IMP::ModelObjectsTemp"""
3889  return _IMP_core.LateralSurfaceConstraint_do_get_inputs(self)
3890 
3891 
3892  def do_get_outputs(self):
3893  """do_get_outputs(LateralSurfaceConstraint self) -> IMP::ModelObjectsTemp"""
3894  return _IMP_core.LateralSurfaceConstraint_do_get_outputs(self)
3895 
3896 
3897  def get_version_info(self):
3898  """get_version_info(LateralSurfaceConstraint self) -> VersionInfo"""
3899  return _IMP_core.LateralSurfaceConstraint_get_version_info(self)
3900 
3901 
3902  def __str__(self):
3903  """__str__(LateralSurfaceConstraint self) -> std::string"""
3904  return _IMP_core.LateralSurfaceConstraint___str__(self)
3905 
3906 
3907  def __repr__(self):
3908  """__repr__(LateralSurfaceConstraint self) -> std::string"""
3909  return _IMP_core.LateralSurfaceConstraint___repr__(self)
3910 
3911 
3912  @staticmethod
3913  def get_from(o):
3914  return _object_cast_to_LateralSurfaceConstraint(o)
3915 
3916 LateralSurfaceConstraint_swigregister = _IMP_core.LateralSurfaceConstraint_swigregister
3917 LateralSurfaceConstraint_swigregister(LateralSurfaceConstraint)
3918 
3919 class AngleTripletScore(IMP.TripletScore):
3920  """Proxy of C++ IMP::core::AngleTripletScore class."""
3921 
3922  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
3923 
3924  def __init__(self, f):
3925  """__init__(IMP::core::AngleTripletScore self, UnaryFunction f) -> AngleTripletScore"""
3926  this = _IMP_core.new_AngleTripletScore(f)
3927  try:
3928  self.this.append(this)
3929  except __builtin__.Exception:
3930  self.this = this
3931 
3932  def do_get_inputs(self, m, pis):
3933  """do_get_inputs(AngleTripletScore self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
3934  return _IMP_core.AngleTripletScore_do_get_inputs(self, m, pis)
3935 
3936 
3937  def get_version_info(self):
3938  """get_version_info(AngleTripletScore self) -> VersionInfo"""
3939  return _IMP_core.AngleTripletScore_get_version_info(self)
3940 
3941 
3942  def __str__(self):
3943  """__str__(AngleTripletScore self) -> std::string"""
3944  return _IMP_core.AngleTripletScore___str__(self)
3945 
3946 
3947  def __repr__(self):
3948  """__repr__(AngleTripletScore self) -> std::string"""
3949  return _IMP_core.AngleTripletScore___repr__(self)
3950 
3951 
3952  @staticmethod
3953  def get_from(o):
3954  return _object_cast_to_AngleTripletScore(o)
3955 
3956 AngleTripletScore_swigregister = _IMP_core.AngleTripletScore_swigregister
3957 AngleTripletScore_swigregister(AngleTripletScore)
3958 
3959 class BallMover(MonteCarloMover):
3960  """Proxy of C++ IMP::core::BallMover class."""
3961 
3962  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
3963 
3964  def __init__(self, *args):
3965  """
3966  __init__(IMP::core::BallMover self, Model m, ParticleIndex pi, IMP::FloatKeys const & vars, double radius) -> BallMover
3967  __init__(IMP::core::BallMover self, Model m, ParticleIndex pi, double radius) -> BallMover
3968  __init__(IMP::core::BallMover self, Model m, IMP::ParticleIndexes const & pis, IMP::FloatKeys const & vars, IMP::Float radius) -> BallMover
3969  __init__(IMP::core::BallMover self, Model m, IMP::ParticleIndexes const & pis, IMP::Float radius) -> BallMover
3970  """
3971  this = _IMP_core.new_BallMover(*args)
3972  try:
3973  self.this.append(this)
3974  except __builtin__.Exception:
3975  self.this = this
3976 
3977  def set_radius(self, radius):
3978  """set_radius(BallMover self, IMP::Float radius)"""
3979  return _IMP_core.BallMover_set_radius(self, radius)
3980 
3981 
3982  def get_radius(self):
3983  """get_radius(BallMover self) -> IMP::Float"""
3984  return _IMP_core.BallMover_get_radius(self)
3985 
3986 
3987  def get_version_info(self):
3988  """get_version_info(BallMover self) -> VersionInfo"""
3989  return _IMP_core.BallMover_get_version_info(self)
3990 
3991 
3992  def __str__(self):
3993  """__str__(BallMover self) -> std::string"""
3994  return _IMP_core.BallMover___str__(self)
3995 
3996 
3997  def __repr__(self):
3998  """__repr__(BallMover self) -> std::string"""
3999  return _IMP_core.BallMover___repr__(self)
4000 
4001 
4002  @staticmethod
4003  def get_from(o):
4004  return _object_cast_to_BallMover(o)
4005 
4006 BallMover_swigregister = _IMP_core.BallMover_swigregister
4007 BallMover_swigregister(BallMover)
4008 
4009 class SerialMover(MonteCarloMover):
4010  """Proxy of C++ IMP::core::SerialMover class."""
4011 
4012  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
4013 
4014  def __init__(self, mvs):
4015  """__init__(IMP::core::SerialMover self, IMP::core::MonteCarloMoversTemp const & mvs) -> SerialMover"""
4016  this = _IMP_core.new_SerialMover(mvs)
4017  try:
4018  self.this.append(this)
4019  except __builtin__.Exception:
4020  self.this = this
4021 
4022  def get_movers(self):
4023  """get_movers(SerialMover self) -> IMP::core::MonteCarloMovers const &"""
4024  return _IMP_core.SerialMover_get_movers(self)
4025 
4026 
4027  def get_version_info(self):
4028  """get_version_info(SerialMover self) -> VersionInfo"""
4029  return _IMP_core.SerialMover_get_version_info(self)
4030 
4031 
4032  def __str__(self):
4033  """__str__(SerialMover self) -> std::string"""
4034  return _IMP_core.SerialMover___str__(self)
4035 
4036 
4037  def __repr__(self):
4038  """__repr__(SerialMover self) -> std::string"""
4039  return _IMP_core.SerialMover___repr__(self)
4040 
4041 
4042  @staticmethod
4043  def get_from(o):
4044  return _object_cast_to_SerialMover(o)
4045 
4046 SerialMover_swigregister = _IMP_core.SerialMover_swigregister
4047 SerialMover_swigregister(SerialMover)
4048 
4049 class SubsetMover(MonteCarloMover):
4050  """Proxy of C++ IMP::core::SubsetMover class."""
4051 
4052  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
4053 
4054  def __init__(self, mvs, n):
4055  """__init__(IMP::core::SubsetMover self, IMP::core::MonteCarloMoversTemp const & mvs, unsigned int n) -> SubsetMover"""
4056  this = _IMP_core.new_SubsetMover(mvs, n)
4057  try:
4058  self.this.append(this)
4059  except __builtin__.Exception:
4060  self.this = this
4061 
4062  def get_movers(self):
4063  """get_movers(SubsetMover self) -> IMP::core::MonteCarloMovers const &"""
4064  return _IMP_core.SubsetMover_get_movers(self)
4065 
4066 
4067  def get_subset_size(self):
4068  """get_subset_size(SubsetMover self) -> unsigned int"""
4069  return _IMP_core.SubsetMover_get_subset_size(self)
4070 
4071 
4072  def get_version_info(self):
4073  """get_version_info(SubsetMover self) -> VersionInfo"""
4074  return _IMP_core.SubsetMover_get_version_info(self)
4075 
4076 
4077  def __str__(self):
4078  """__str__(SubsetMover self) -> std::string"""
4079  return _IMP_core.SubsetMover___str__(self)
4080 
4081 
4082  def __repr__(self):
4083  """__repr__(SubsetMover self) -> std::string"""
4084  return _IMP_core.SubsetMover___repr__(self)
4085 
4086 
4087  @staticmethod
4088  def get_from(o):
4089  return _object_cast_to_SubsetMover(o)
4090 
4091 SubsetMover_swigregister = _IMP_core.SubsetMover_swigregister
4092 SubsetMover_swigregister(SubsetMover)
4093 
4094 class DirectionMover(MonteCarloMover):
4095  """Proxy of C++ IMP::core::DirectionMover class."""
4096 
4097  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
4098 
4099  def __init__(self, *args):
4100  """
4101  __init__(IMP::core::DirectionMover self, Model m, ParticleIndex pi, IMP::Float max_rotation, IMP::Float reflect_probability) -> DirectionMover
4102  __init__(IMP::core::DirectionMover self, Direction d, IMP::Float max_rotation, IMP::Float reflect_probability) -> DirectionMover
4103  """
4104  this = _IMP_core.new_DirectionMover(*args)
4105  try:
4106  self.this.append(this)
4107  except __builtin__.Exception:
4108  self.this = this
4109 
4110  def set_maximum_rotation(self, mr):
4111  """set_maximum_rotation(DirectionMover self, IMP::Float mr)"""
4112  return _IMP_core.DirectionMover_set_maximum_rotation(self, mr)
4113 
4114 
4115  def set_reflect_probability(self, rp):
4116  """set_reflect_probability(DirectionMover self, IMP::Float rp)"""
4117  return _IMP_core.DirectionMover_set_reflect_probability(self, rp)
4118 
4119 
4120  def get_maximum_rotation(self):
4121  """get_maximum_rotation(DirectionMover self) -> IMP::Float"""
4122  return _IMP_core.DirectionMover_get_maximum_rotation(self)
4123 
4124 
4125  def get_reflect_probability(self):
4126  """get_reflect_probability(DirectionMover self) -> IMP::Float"""
4127  return _IMP_core.DirectionMover_get_reflect_probability(self)
4128 
4129 
4130  def get_direction(self):
4131  """get_direction(DirectionMover self) -> Direction"""
4132  return _IMP_core.DirectionMover_get_direction(self)
4133 
4134 
4135  def get_version_info(self):
4136  """get_version_info(DirectionMover self) -> VersionInfo"""
4137  return _IMP_core.DirectionMover_get_version_info(self)
4138 
4139 
4140  def __str__(self):
4141  """__str__(DirectionMover self) -> std::string"""
4142  return _IMP_core.DirectionMover___str__(self)
4143 
4144 
4145  def __repr__(self):
4146  """__repr__(DirectionMover self) -> std::string"""
4147  return _IMP_core.DirectionMover___repr__(self)
4148 
4149 
4150  @staticmethod
4151  def get_from(o):
4152  return _object_cast_to_DirectionMover(o)
4153 
4154 DirectionMover_swigregister = _IMP_core.DirectionMover_swigregister
4155 DirectionMover_swigregister(DirectionMover)
4156 
4157 class SurfaceMover(MonteCarloMover):
4158  """Proxy of C++ IMP::core::SurfaceMover class."""
4159 
4160  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
4161 
4162  def __init__(self, *args):
4163  """
4164  __init__(IMP::core::SurfaceMover self, Model m, ParticleIndex pi, IMP::Float max_translation, IMP::Float max_rotation, IMP::Float reflect_probability) -> SurfaceMover
4165  __init__(IMP::core::SurfaceMover self, Surface s, IMP::Float max_translation, IMP::Float max_rotation, IMP::Float reflect_probability) -> SurfaceMover
4166  """
4167  this = _IMP_core.new_SurfaceMover(*args)
4168  try:
4169  self.this.append(this)
4170  except __builtin__.Exception:
4171  self.this = this
4172 
4173  def set_maximum_translation(self, mt):
4174  """set_maximum_translation(SurfaceMover self, IMP::Float mt)"""
4175  return _IMP_core.SurfaceMover_set_maximum_translation(self, mt)
4176 
4177 
4178  def set_maximum_rotation(self, mr):
4179  """set_maximum_rotation(SurfaceMover self, IMP::Float mr)"""
4180  return _IMP_core.SurfaceMover_set_maximum_rotation(self, mr)
4181 
4182 
4183  def set_reflect_probability(self, rp):
4184  """set_reflect_probability(SurfaceMover self, IMP::Float rp)"""
4185  return _IMP_core.SurfaceMover_set_reflect_probability(self, rp)
4186 
4187 
4188  def get_maximum_translation(self):
4189  """get_maximum_translation(SurfaceMover self) -> IMP::Float"""
4190  return _IMP_core.SurfaceMover_get_maximum_translation(self)
4191 
4192 
4193  def get_maximum_rotation(self):
4194  """get_maximum_rotation(SurfaceMover self) -> IMP::Float"""
4195  return _IMP_core.SurfaceMover_get_maximum_rotation(self)
4196 
4197 
4198  def get_reflect_probability(self):
4199  """get_reflect_probability(SurfaceMover self) -> IMP::Float"""
4200  return _IMP_core.SurfaceMover_get_reflect_probability(self)
4201 
4202 
4203  def get_surface(self):
4204  """get_surface(SurfaceMover self) -> Surface"""
4205  return _IMP_core.SurfaceMover_get_surface(self)
4206 
4207 
4208  def get_version_info(self):
4209  """get_version_info(SurfaceMover self) -> VersionInfo"""
4210  return _IMP_core.SurfaceMover_get_version_info(self)
4211 
4212 
4213  def __str__(self):
4214  """__str__(SurfaceMover self) -> std::string"""
4215  return _IMP_core.SurfaceMover___str__(self)
4216 
4217 
4218  def __repr__(self):
4219  """__repr__(SurfaceMover self) -> std::string"""
4220  return _IMP_core.SurfaceMover___repr__(self)
4221 
4222 
4223  @staticmethod
4224  def get_from(o):
4225  return _object_cast_to_SurfaceMover(o)
4226 
4227 SurfaceMover_swigregister = _IMP_core.SurfaceMover_swigregister
4228 SurfaceMover_swigregister(SurfaceMover)
4229 
4230 class BoxSweepClosePairsFinder(ClosePairsFinder):
4231  """Proxy of C++ IMP::core::BoxSweepClosePairsFinder class."""
4232 
4233  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
4234 
4235  def __init__(self):
4236  """__init__(IMP::core::BoxSweepClosePairsFinder self) -> BoxSweepClosePairsFinder"""
4237  this = _IMP_core.new_BoxSweepClosePairsFinder()
4238  try:
4239  self.this.append(this)
4240  except __builtin__.Exception:
4241  self.this = this
4242 
4243  def get_close_pairs(self, *args):
4244  """
4245  get_close_pairs(BoxSweepClosePairsFinder self, IMP::algebra::BoundingBox3Ds const & bbs) -> IMP::IntPairs
4246  get_close_pairs(BoxSweepClosePairsFinder self, IMP::algebra::BoundingBox3Ds const & bas, IMP::algebra::BoundingBox3Ds const & bbs) -> IMP::IntPairs
4247  get_close_pairs(BoxSweepClosePairsFinder self, Model m, IMP::ParticleIndexes const & pc) -> IMP::ParticleIndexPairs
4248  get_close_pairs(BoxSweepClosePairsFinder self, Model m, IMP::ParticleIndexes const & pca, IMP::ParticleIndexes const & pcb) -> IMP::ParticleIndexPairs
4249  """
4250  return _IMP_core.BoxSweepClosePairsFinder_get_close_pairs(self, *args)
4251 
4252 
4253  def do_get_inputs(self, m, pis):
4254  """do_get_inputs(BoxSweepClosePairsFinder self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
4255  return _IMP_core.BoxSweepClosePairsFinder_do_get_inputs(self, m, pis)
4256 
4257 
4258  def get_version_info(self):
4259  """get_version_info(BoxSweepClosePairsFinder self) -> VersionInfo"""
4260  return _IMP_core.BoxSweepClosePairsFinder_get_version_info(self)
4261 
4262 
4263  def __str__(self):
4264  """__str__(BoxSweepClosePairsFinder self) -> std::string"""
4265  return _IMP_core.BoxSweepClosePairsFinder___str__(self)
4266 
4267 
4268  def __repr__(self):
4269  """__repr__(BoxSweepClosePairsFinder self) -> std::string"""
4270  return _IMP_core.BoxSweepClosePairsFinder___repr__(self)
4271 
4272 
4273  @staticmethod
4274  def get_from(o):
4275  return _object_cast_to_BoxSweepClosePairsFinder(o)
4276 
4277 BoxSweepClosePairsFinder_swigregister = _IMP_core.BoxSweepClosePairsFinder_swigregister
4278 BoxSweepClosePairsFinder_swigregister(BoxSweepClosePairsFinder)
4279 
4280 class CentroidOfRefined(IMP.SingletonModifier):
4281  """Proxy of C++ IMP::core::CentroidOfRefined class."""
4282 
4283  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
4284 
4285  def __init__(self, *args):
4286  """
4287  __init__(IMP::core::CentroidOfRefined self, Refiner r, FloatKey weight, IMP::FloatKeys ks) -> CentroidOfRefined
4288  __init__(IMP::core::CentroidOfRefined self, Refiner r, FloatKey weight) -> CentroidOfRefined
4289  __init__(IMP::core::CentroidOfRefined self, Refiner r) -> CentroidOfRefined
4290  """
4291  this = _IMP_core.new_CentroidOfRefined(*args)
4292  try:
4293  self.this.append(this)
4294  except __builtin__.Exception:
4295  self.this = this
4296 
4297  def do_get_inputs(self, m, pis):
4298  """do_get_inputs(CentroidOfRefined self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
4299  return _IMP_core.CentroidOfRefined_do_get_inputs(self, m, pis)
4300 
4301 
4302  def do_get_outputs(self, m, pis):
4303  """do_get_outputs(CentroidOfRefined self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
4304  return _IMP_core.CentroidOfRefined_do_get_outputs(self, m, pis)
4305 
4306 
4307  def get_version_info(self):
4308  """get_version_info(CentroidOfRefined self) -> VersionInfo"""
4309  return _IMP_core.CentroidOfRefined_get_version_info(self)
4310 
4311 
4312  def __str__(self):
4313  """__str__(CentroidOfRefined self) -> std::string"""
4314  return _IMP_core.CentroidOfRefined___str__(self)
4315 
4316 
4317  def __repr__(self):
4318  """__repr__(CentroidOfRefined self) -> std::string"""
4319  return _IMP_core.CentroidOfRefined___repr__(self)
4320 
4321 
4322  @staticmethod
4323  def get_from(o):
4324  return _object_cast_to_CentroidOfRefined(o)
4325 
4326 CentroidOfRefined_swigregister = _IMP_core.CentroidOfRefined_swigregister
4327 CentroidOfRefined_swigregister(CentroidOfRefined)
4328 
4329 class Centroid(XYZ):
4330  """Proxy of C++ IMP::core::Centroid class."""
4331 
4332  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
4333 
4334  def get_constraint(self):
4335  """get_constraint(Centroid self) -> Constraint"""
4336  return _IMP_core.Centroid_get_constraint(self)
4337 
4338 
4339  def __init__(self, *args):
4340  """
4341  __init__(IMP::core::Centroid self) -> Centroid
4342  __init__(IMP::core::Centroid self, Model m, ParticleIndex id) -> Centroid
4343  __init__(IMP::core::Centroid self, _ParticleAdaptor d) -> Centroid
4344  """
4345  this = _IMP_core.new_Centroid(*args)
4346  try:
4347  self.this.append(this)
4348  except __builtin__.Exception:
4349  self.this = this
4350 
4351  def show(self, *args):
4352  """
4353  show(Centroid self, _ostream out)
4354  show(Centroid self)
4355  """
4356  return _IMP_core.Centroid_show(self, *args)
4357 
4358 
4359  def setup_particle(*args):
4360  """
4361  setup_particle(Model m, ParticleIndex pi, _ParticleIndexesAdaptor members) -> Centroid
4362  setup_particle(_ParticleAdaptor decorator, _ParticleIndexesAdaptor members) -> Centroid
4363  setup_particle(Model m, ParticleIndex pi, Refiner refiner) -> Centroid
4364  setup_particle(_ParticleAdaptor decorator, Refiner refiner) -> Centroid
4365  """
4366  return _IMP_core.Centroid_setup_particle(*args)
4367 
4368  setup_particle = staticmethod(setup_particle)
4369 
4370  def get_is_setup(*args):
4371  """
4372  get_is_setup(_ParticleAdaptor p) -> bool
4373  get_is_setup(Model m, ParticleIndex pi) -> bool
4374  """
4375  return _IMP_core.Centroid_get_is_setup(*args)
4376 
4377  get_is_setup = staticmethod(get_is_setup)
4378 
4379  def add_attribute(self, *args):
4380  """
4381  add_attribute(Centroid self, FloatKey k, IMP::Float v, bool opt)
4382  add_attribute(Centroid self, FloatKey a0, IMP::Float a1)
4383  add_attribute(Centroid self, IntKey a0, IMP::Int a1)
4384  add_attribute(Centroid self, StringKey a0, IMP::String a1)
4385  add_attribute(Centroid self, ParticleIndexKey a0, Particle a1)
4386  add_attribute(Centroid self, ObjectKey a0, Object a1)
4387  """
4388  return _IMP_core.Centroid_add_attribute(self, *args)
4389 
4390 
4391  def get_value(self, *args):
4392  """
4393  get_value(Centroid self, FloatKey a0) -> IMP::Float
4394  get_value(Centroid self, IntKey a0) -> IMP::Int
4395  get_value(Centroid self, StringKey a0) -> IMP::String
4396  get_value(Centroid self, ParticleIndexKey a0) -> Particle
4397  get_value(Centroid self, ObjectKey a0) -> Object
4398  """
4399  return _IMP_core.Centroid_get_value(self, *args)
4400 
4401 
4402  def set_value(self, *args):
4403  """
4404  set_value(Centroid self, FloatKey a0, IMP::Float a1)
4405  set_value(Centroid self, IntKey a0, IMP::Int a1)
4406  set_value(Centroid self, StringKey a0, IMP::String a1)
4407  set_value(Centroid self, ParticleIndexKey a0, Particle a1)
4408  set_value(Centroid self, ObjectKey a0, Object a1)
4409  """
4410  return _IMP_core.Centroid_set_value(self, *args)
4411 
4412 
4413  def remove_attribute(self, *args):
4414  """
4415  remove_attribute(Centroid self, FloatKey a0)
4416  remove_attribute(Centroid self, IntKey a0)
4417  remove_attribute(Centroid self, StringKey a0)
4418  remove_attribute(Centroid self, ParticleIndexKey a0)
4419  remove_attribute(Centroid self, ObjectKey a0)
4420  """
4421  return _IMP_core.Centroid_remove_attribute(self, *args)
4422 
4423 
4424  def has_attribute(self, *args):
4425  """
4426  has_attribute(Centroid self, FloatKey a0) -> bool
4427  has_attribute(Centroid self, IntKey a0) -> bool
4428  has_attribute(Centroid self, StringKey a0) -> bool
4429  has_attribute(Centroid self, ParticleIndexKey a0) -> bool
4430  has_attribute(Centroid self, ObjectKey a0) -> bool
4431  """
4432  return _IMP_core.Centroid_has_attribute(self, *args)
4433 
4434 
4435  def get_derivative(self, a0):
4436  """get_derivative(Centroid self, FloatKey a0) -> double"""
4437  return _IMP_core.Centroid_get_derivative(self, a0)
4438 
4439 
4440  def get_name(self):
4441  """get_name(Centroid self) -> std::string"""
4442  return _IMP_core.Centroid_get_name(self)
4443 
4444 
4445  def clear_caches(self):
4446  """clear_caches(Centroid self)"""
4447  return _IMP_core.Centroid_clear_caches(self)
4448 
4449 
4450  def set_name(self, a0):
4451  """set_name(Centroid self, std::string a0)"""
4452  return _IMP_core.Centroid_set_name(self, a0)
4453 
4454 
4455  def set_check_level(self, a0):
4456  """set_check_level(Centroid self, IMP::CheckLevel a0)"""
4457  return _IMP_core.Centroid_set_check_level(self, a0)
4458 
4459 
4460  def add_to_derivative(self, a0, a1, a2):
4461  """add_to_derivative(Centroid self, FloatKey a0, double a1, DerivativeAccumulator a2)"""
4462  return _IMP_core.Centroid_add_to_derivative(self, a0, a1, a2)
4463 
4464 
4465  def set_is_optimized(self, a0, a1):
4466  """set_is_optimized(Centroid self, FloatKey a0, bool a1)"""
4467  return _IMP_core.Centroid_set_is_optimized(self, a0, a1)
4468 
4469 
4470  def get_is_optimized(self, a0):
4471  """get_is_optimized(Centroid self, FloatKey a0) -> bool"""
4472  return _IMP_core.Centroid_get_is_optimized(self, a0)
4473 
4474 
4475  def get_check_level(self):
4476  """get_check_level(Centroid self) -> IMP::CheckLevel"""
4477  return _IMP_core.Centroid_get_check_level(self)
4478 
4479 
4480  def __eq__(self, *args):
4481  """
4482  __eq__(Centroid self, Centroid o) -> bool
4483  __eq__(Centroid self, Particle d) -> bool
4484  """
4485  return _IMP_core.Centroid___eq__(self, *args)
4486 
4487 
4488  def __ne__(self, *args):
4489  """
4490  __ne__(Centroid self, Centroid o) -> bool
4491  __ne__(Centroid self, Particle d) -> bool
4492  """
4493  return _IMP_core.Centroid___ne__(self, *args)
4494 
4495 
4496  def __le__(self, *args):
4497  """
4498  __le__(Centroid self, Centroid o) -> bool
4499  __le__(Centroid self, Particle d) -> bool
4500  """
4501  return _IMP_core.Centroid___le__(self, *args)
4502 
4503 
4504  def __lt__(self, *args):
4505  """
4506  __lt__(Centroid self, Centroid o) -> bool
4507  __lt__(Centroid self, Particle d) -> bool
4508  """
4509  return _IMP_core.Centroid___lt__(self, *args)
4510 
4511 
4512  def __ge__(self, *args):
4513  """
4514  __ge__(Centroid self, Centroid o) -> bool
4515  __ge__(Centroid self, Particle d) -> bool
4516  """
4517  return _IMP_core.Centroid___ge__(self, *args)
4518 
4519 
4520  def __gt__(self, *args):
4521  """
4522  __gt__(Centroid self, Centroid o) -> bool
4523  __gt__(Centroid self, Particle d) -> bool
4524  """
4525  return _IMP_core.Centroid___gt__(self, *args)
4526 
4527 
4528  def __hash__(self):
4529  """__hash__(Centroid self) -> std::size_t"""
4530  return _IMP_core.Centroid___hash__(self)
4531 
4532 
4533  def __str__(self):
4534  """__str__(Centroid self) -> std::string"""
4535  return _IMP_core.Centroid___str__(self)
4536 
4537 
4538  def __repr__(self):
4539  """__repr__(Centroid self) -> std::string"""
4540  return _IMP_core.Centroid___repr__(self)
4541 
4542  __swig_destroy__ = _IMP_core.delete_Centroid
4543  __del__ = lambda self: None
4544 Centroid_swigregister = _IMP_core.Centroid_swigregister
4545 Centroid_swigregister(Centroid)
4546 
4547 def Centroid_setup_particle(*args):
4548  """
4549  setup_particle(Model m, ParticleIndex pi, _ParticleIndexesAdaptor members) -> Centroid
4550  setup_particle(_ParticleAdaptor decorator, _ParticleIndexesAdaptor members) -> Centroid
4551  setup_particle(Model m, ParticleIndex pi, Refiner refiner) -> Centroid
4552  Centroid_setup_particle(_ParticleAdaptor decorator, Refiner refiner) -> Centroid
4553  """
4554  return _IMP_core.Centroid_setup_particle(*args)
4555 
4556 def Centroid_get_is_setup(*args):
4557  """
4558  get_is_setup(_ParticleAdaptor p) -> bool
4559  Centroid_get_is_setup(Model m, ParticleIndex pi) -> bool
4560  """
4561  return _IMP_core.Centroid_get_is_setup(*args)
4562 
4563 class ChecksScoreState(IMP.ScoreState):
4564  """Proxy of C++ IMP::core::ChecksScoreState class."""
4565 
4566  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
4567 
4568  def __init__(self, m, probability):
4569  """__init__(IMP::core::ChecksScoreState self, Model m, double probability) -> ChecksScoreState"""
4570  this = _IMP_core.new_ChecksScoreState(m, probability)
4571  try:
4572  self.this.append(this)
4573  except __builtin__.Exception:
4574  self.this = this
4575 
4576  def get_number_of_checked(self):
4577  """get_number_of_checked(ChecksScoreState self) -> unsigned int"""
4578  return _IMP_core.ChecksScoreState_get_number_of_checked(self)
4579 
4580 
4581  def do_before_evaluate(self):
4582  """do_before_evaluate(ChecksScoreState self)"""
4583  return _IMP_core.ChecksScoreState_do_before_evaluate(self)
4584 
4585 
4586  def do_after_evaluate(self, da):
4587  """do_after_evaluate(ChecksScoreState self, DerivativeAccumulator da)"""
4588  return _IMP_core.ChecksScoreState_do_after_evaluate(self, da)
4589 
4590 
4591  def do_get_outputs(self):
4592  """do_get_outputs(ChecksScoreState self) -> IMP::ModelObjectsTemp"""
4593  return _IMP_core.ChecksScoreState_do_get_outputs(self)
4594 
4595 
4596  def do_get_inputs(self):
4597  """do_get_inputs(ChecksScoreState self) -> IMP::ModelObjectsTemp"""
4598  return _IMP_core.ChecksScoreState_do_get_inputs(self)
4599 
4600 
4601  def get_version_info(self):
4602  """get_version_info(ChecksScoreState self) -> VersionInfo"""
4603  return _IMP_core.ChecksScoreState_get_version_info(self)
4604 
4605 
4606  def __str__(self):
4607  """__str__(ChecksScoreState self) -> std::string"""
4608  return _IMP_core.ChecksScoreState___str__(self)
4609 
4610 
4611  def __repr__(self):
4612  """__repr__(ChecksScoreState self) -> std::string"""
4613  return _IMP_core.ChecksScoreState___repr__(self)
4614 
4615 
4616  @staticmethod
4617  def get_from(o):
4618  return _object_cast_to_ChecksScoreState(o)
4619 
4620 ChecksScoreState_swigregister = _IMP_core.ChecksScoreState_swigregister
4621 ChecksScoreState_swigregister(ChecksScoreState)
4622 
4623 class ChildrenRefiner(IMP.Refiner):
4624  """Proxy of C++ IMP::core::ChildrenRefiner class."""
4625 
4626  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
4627 
4628  def __init__(self, tr):
4629  """__init__(IMP::core::ChildrenRefiner self, HierarchyTraits tr) -> ChildrenRefiner"""
4630  this = _IMP_core.new_ChildrenRefiner(tr)
4631  try:
4632  self.this.append(this)
4633  except __builtin__.Exception:
4634  self.this = this
4635 
4636  def do_get_inputs(self, m, pis):
4637  """do_get_inputs(ChildrenRefiner self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
4638  return _IMP_core.ChildrenRefiner_do_get_inputs(self, m, pis)
4639 
4640 
4641  def get_version_info(self):
4642  """get_version_info(ChildrenRefiner self) -> VersionInfo"""
4643  return _IMP_core.ChildrenRefiner_get_version_info(self)
4644 
4645 
4646  def __str__(self):
4647  """__str__(ChildrenRefiner self) -> std::string"""
4648  return _IMP_core.ChildrenRefiner___str__(self)
4649 
4650 
4651  def __repr__(self):
4652  """__repr__(ChildrenRefiner self) -> std::string"""
4653  return _IMP_core.ChildrenRefiner___repr__(self)
4654 
4655 
4656  @staticmethod
4657  def get_from(o):
4658  return _object_cast_to_ChildrenRefiner(o)
4659 
4660 ChildrenRefiner_swigregister = _IMP_core.ChildrenRefiner_swigregister
4661 ChildrenRefiner_swigregister(ChildrenRefiner)
4662 
4663 class ClosedCubicSpline(IMP.UnaryFunction):
4664  """Proxy of C++ IMP::core::ClosedCubicSpline class."""
4665 
4666  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
4667 
4668  def __init__(self, values, minrange, spacing):
4669  """__init__(IMP::core::ClosedCubicSpline self, IMP::Floats const & values, double minrange, double spacing) -> ClosedCubicSpline"""
4670  this = _IMP_core.new_ClosedCubicSpline(values, minrange, spacing)
4671  try:
4672  self.this.append(this)
4673  except __builtin__.Exception:
4674  self.this = this
4675 
4676  def get_version_info(self):
4677  """get_version_info(ClosedCubicSpline self) -> VersionInfo"""
4678  return _IMP_core.ClosedCubicSpline_get_version_info(self)
4679 
4680 
4681  def do_show(self, out):
4682  """do_show(ClosedCubicSpline self, _ostream out)"""
4683  return _IMP_core.ClosedCubicSpline_do_show(self, out)
4684 
4685 
4686  def __str__(self):
4687  """__str__(ClosedCubicSpline self) -> std::string"""
4688  return _IMP_core.ClosedCubicSpline___str__(self)
4689 
4690 
4691  def __repr__(self):
4692  """__repr__(ClosedCubicSpline self) -> std::string"""
4693  return _IMP_core.ClosedCubicSpline___repr__(self)
4694 
4695 
4696  @staticmethod
4697  def get_from(o):
4698  return _object_cast_to_ClosedCubicSpline(o)
4699 
4700 ClosedCubicSpline_swigregister = _IMP_core.ClosedCubicSpline_swigregister
4701 ClosedCubicSpline_swigregister(ClosedCubicSpline)
4702 
4703 class KClosePairsPairScore(IMP.PairScore):
4704  """Proxy of C++ IMP::core::KClosePairsPairScore class."""
4705 
4706  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
4707 
4708  def __init__(self, f, r, k=1):
4709  """
4710  __init__(IMP::core::KClosePairsPairScore self, PairScore f, Refiner r, int k=1) -> KClosePairsPairScore
4711  __init__(IMP::core::KClosePairsPairScore self, PairScore f, Refiner r) -> KClosePairsPairScore
4712  """
4713  this = _IMP_core.new_KClosePairsPairScore(f, r, k)
4714  try:
4715  self.this.append(this)
4716  except __builtin__.Exception:
4717  self.this = this
4718 
4719  def get_close_pairs(self, pp):
4720  """get_close_pairs(KClosePairsPairScore self, IMP::ParticlePair const & pp) -> IMP::ParticlePairsTemp"""
4721  return _IMP_core.KClosePairsPairScore_get_close_pairs(self, pp)
4722 
4723 
4724  def create_current_decomposition(self, m, vt):
4725  """create_current_decomposition(KClosePairsPairScore self, Model m, IMP::ParticleIndexPair const & vt) -> IMP::Restraints"""
4726  return _IMP_core.KClosePairsPairScore_create_current_decomposition(self, m, vt)
4727 
4728 
4729  def do_get_inputs(self, m, pis):
4730  """do_get_inputs(KClosePairsPairScore self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
4731  return _IMP_core.KClosePairsPairScore_do_get_inputs(self, m, pis)
4732 
4733 
4734  def get_version_info(self):
4735  """get_version_info(KClosePairsPairScore self) -> VersionInfo"""
4736  return _IMP_core.KClosePairsPairScore_get_version_info(self)
4737 
4738 
4739  def __str__(self):
4740  """__str__(KClosePairsPairScore self) -> std::string"""
4741  return _IMP_core.KClosePairsPairScore___str__(self)
4742 
4743 
4744  def __repr__(self):
4745  """__repr__(KClosePairsPairScore self) -> std::string"""
4746  return _IMP_core.KClosePairsPairScore___repr__(self)
4747 
4748 
4749  @staticmethod
4750  def get_from(o):
4751  return _object_cast_to_KClosePairsPairScore(o)
4752 
4753 KClosePairsPairScore_swigregister = _IMP_core.KClosePairsPairScore_swigregister
4754 KClosePairsPairScore_swigregister(KClosePairsPairScore)
4755 
4756 class ClosePairsPairScore(IMP.PairScore):
4757  """Proxy of C++ IMP::core::ClosePairsPairScore class."""
4758 
4759  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
4760 
4761  def __init__(self, f, r, max_distance):
4762  """__init__(IMP::core::ClosePairsPairScore self, PairScore f, Refiner r, IMP::Float max_distance) -> ClosePairsPairScore"""
4763  this = _IMP_core.new_ClosePairsPairScore(f, r, max_distance)
4764  try:
4765  self.this.append(this)
4766  except __builtin__.Exception:
4767  self.this = this
4768 
4769  def get_close_pairs(self, pp):
4770  """get_close_pairs(ClosePairsPairScore self, IMP::ParticlePair const & pp) -> IMP::ParticlePairsTemp"""
4771  return _IMP_core.ClosePairsPairScore_get_close_pairs(self, pp)
4772 
4773 
4774  def create_current_decomposition(self, m, vt):
4775  """create_current_decomposition(ClosePairsPairScore self, Model m, IMP::ParticleIndexPair const & vt) -> IMP::Restraints"""
4776  return _IMP_core.ClosePairsPairScore_create_current_decomposition(self, m, vt)
4777 
4778 
4779  def do_get_inputs(self, m, pis):
4780  """do_get_inputs(ClosePairsPairScore self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
4781  return _IMP_core.ClosePairsPairScore_do_get_inputs(self, m, pis)
4782 
4783 
4784  def get_version_info(self):
4785  """get_version_info(ClosePairsPairScore self) -> VersionInfo"""
4786  return _IMP_core.ClosePairsPairScore_get_version_info(self)
4787 
4788 
4789  def __str__(self):
4790  """__str__(ClosePairsPairScore self) -> std::string"""
4791  return _IMP_core.ClosePairsPairScore___str__(self)
4792 
4793 
4794  def __repr__(self):
4795  """__repr__(ClosePairsPairScore self) -> std::string"""
4796  return _IMP_core.ClosePairsPairScore___repr__(self)
4797 
4798 
4799  @staticmethod
4800  def get_from(o):
4801  return _object_cast_to_ClosePairsPairScore(o)
4802 
4803 ClosePairsPairScore_swigregister = _IMP_core.ClosePairsPairScore_swigregister
4804 ClosePairsPairScore_swigregister(ClosePairsPairScore)
4805 
4806 class ConjugateGradients(IMP.AttributeOptimizer):
4807  """Proxy of C++ IMP::core::ConjugateGradients class."""
4808 
4809  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
4810 
4811  def __init__(self, *args):
4812  """
4813  __init__(IMP::core::ConjugateGradients self, Model m, std::string name) -> ConjugateGradients
4814  __init__(IMP::core::ConjugateGradients self, Model m) -> ConjugateGradients
4815  """
4816  this = _IMP_core.new_ConjugateGradients(*args)
4817  try:
4818  self.this.append(this)
4819  except __builtin__.Exception:
4820  self.this = this
4821 
4822  def set_gradient_threshold(self, t):
4823  """set_gradient_threshold(ConjugateGradients self, IMP::Float t)"""
4824  return _IMP_core.ConjugateGradients_set_gradient_threshold(self, t)
4825 
4826 
4827  def set_threshold(self, t):
4828  """set_threshold(ConjugateGradients self, IMP::Float t)"""
4829  return _IMP_core.ConjugateGradients_set_threshold(self, t)
4830 
4831 
4832  def set_max_change(self, t):
4833  """set_max_change(ConjugateGradients self, IMP::Float t)"""
4834  return _IMP_core.ConjugateGradients_set_max_change(self, t)
4835 
4836 
4837  def do_optimize(self, max_steps):
4838  """do_optimize(ConjugateGradients self, unsigned int max_steps) -> IMP::Float"""
4839  return _IMP_core.ConjugateGradients_do_optimize(self, max_steps)
4840 
4841 
4842  def get_version_info(self):
4843  """get_version_info(ConjugateGradients self) -> VersionInfo"""
4844  return _IMP_core.ConjugateGradients_get_version_info(self)
4845 
4846 
4847  def __str__(self):
4848  """__str__(ConjugateGradients self) -> std::string"""
4849  return _IMP_core.ConjugateGradients___str__(self)
4850 
4851 
4852  def __repr__(self):
4853  """__repr__(ConjugateGradients self) -> std::string"""
4854  return _IMP_core.ConjugateGradients___repr__(self)
4855 
4856 
4857  @staticmethod
4858  def get_from(o):
4859  return _object_cast_to_ConjugateGradients(o)
4860 
4861 ConjugateGradients_swigregister = _IMP_core.ConjugateGradients_swigregister
4862 ConjugateGradients_swigregister(ConjugateGradients)
4863 
4864 class ConnectivityRestraint(IMP.Restraint):
4865  """Proxy of C++ IMP::core::ConnectivityRestraint class."""
4866 
4867  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
4868 
4869  def __init__(self, ps, sc):
4870  """__init__(IMP::core::ConnectivityRestraint self, PairScore ps, _SingletonContainerAdaptor sc) -> ConnectivityRestraint"""
4871  this = _IMP_core.new_ConnectivityRestraint(ps, sc)
4872  try:
4873  self.this.append(this)
4874  except __builtin__.Exception:
4875  self.this = this
4876 
4877  def get_connected_index_pairs(self):
4878  """get_connected_index_pairs(ConnectivityRestraint self) -> IMP::ParticleIndexPairs"""
4879  return _IMP_core.ConnectivityRestraint_get_connected_index_pairs(self)
4880 
4881 
4882  def get_pair_score(self):
4883  """get_pair_score(ConnectivityRestraint self) -> PairScore"""
4884  return _IMP_core.ConnectivityRestraint_get_pair_score(self)
4885 
4886 
4887  def do_create_current_decomposition(self):
4888  """do_create_current_decomposition(ConnectivityRestraint self) -> IMP::Restraints"""
4889  return _IMP_core.ConnectivityRestraint_do_create_current_decomposition(self)
4890 
4891 
4892  def do_get_inputs(self):
4893  """do_get_inputs(ConnectivityRestraint self) -> IMP::ModelObjectsTemp"""
4894  return _IMP_core.ConnectivityRestraint_do_get_inputs(self)
4895 
4896 
4897  def get_version_info(self):
4898  """get_version_info(ConnectivityRestraint self) -> VersionInfo"""
4899  return _IMP_core.ConnectivityRestraint_get_version_info(self)
4900 
4901 
4902  def __str__(self):
4903  """__str__(ConnectivityRestraint self) -> std::string"""
4904  return _IMP_core.ConnectivityRestraint___str__(self)
4905 
4906 
4907  def __repr__(self):
4908  """__repr__(ConnectivityRestraint self) -> std::string"""
4909  return _IMP_core.ConnectivityRestraint___repr__(self)
4910 
4911 
4912  @staticmethod
4913  def get_from(o):
4914  return _object_cast_to_ConnectivityRestraint(o)
4915 
4916 ConnectivityRestraint_swigregister = _IMP_core.ConnectivityRestraint_swigregister
4917 ConnectivityRestraint_swigregister(ConnectivityRestraint)
4918 
4919 class ConstantRestraint(IMP.Restraint):
4920  """Proxy of C++ IMP::core::ConstantRestraint class."""
4921 
4922  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
4923 
4924  def __init__(self, m, v):
4925  """__init__(IMP::core::ConstantRestraint self, Model m, IMP::Float v) -> ConstantRestraint"""
4926  this = _IMP_core.new_ConstantRestraint(m, v)
4927  try:
4928  self.this.append(this)
4929  except __builtin__.Exception:
4930  self.this = this
4931 
4932  def do_get_inputs(self):
4933  """do_get_inputs(ConstantRestraint self) -> IMP::ModelObjectsTemp"""
4934  return _IMP_core.ConstantRestraint_do_get_inputs(self)
4935 
4936 
4937  def get_version_info(self):
4938  """get_version_info(ConstantRestraint self) -> VersionInfo"""
4939  return _IMP_core.ConstantRestraint_get_version_info(self)
4940 
4941 
4942  def __str__(self):
4943  """__str__(ConstantRestraint self) -> std::string"""
4944  return _IMP_core.ConstantRestraint___str__(self)
4945 
4946 
4947  def __repr__(self):
4948  """__repr__(ConstantRestraint self) -> std::string"""
4949  return _IMP_core.ConstantRestraint___repr__(self)
4950 
4951 
4952  @staticmethod
4953  def get_from(o):
4954  return _object_cast_to_ConstantRestraint(o)
4955 
4956 ConstantRestraint_swigregister = _IMP_core.ConstantRestraint_swigregister
4957 ConstantRestraint_swigregister(ConstantRestraint)
4958 
4959 class Cosine(IMP.UnaryFunction):
4960  """Proxy of C++ IMP::core::Cosine class."""
4961 
4962  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
4963 
4964  def __init__(self, force_constant, periodicity, phase):
4965  """__init__(IMP::core::Cosine self, IMP::Float force_constant, int periodicity, IMP::Float phase) -> Cosine"""
4966  this = _IMP_core.new_Cosine(force_constant, periodicity, phase)
4967  try:
4968  self.this.append(this)
4969  except __builtin__.Exception:
4970  self.this = this
4971 
4972  def get_version_info(self):
4973  """get_version_info(Cosine self) -> VersionInfo"""
4974  return _IMP_core.Cosine_get_version_info(self)
4975 
4976 
4977  def do_show(self, out):
4978  """do_show(Cosine self, _ostream out)"""
4979  return _IMP_core.Cosine_do_show(self, out)
4980 
4981 
4982  def __str__(self):
4983  """__str__(Cosine self) -> std::string"""
4984  return _IMP_core.Cosine___str__(self)
4985 
4986 
4987  def __repr__(self):
4988  """__repr__(Cosine self) -> std::string"""
4989  return _IMP_core.Cosine___repr__(self)
4990 
4991 
4992  @staticmethod
4993  def get_from(o):
4994  return _object_cast_to_Cosine(o)
4995 
4996 Cosine_swigregister = _IMP_core.Cosine_swigregister
4997 Cosine_swigregister(Cosine)
4998 
4999 class CoverRefined(IMP.SingletonModifier):
5000  """Proxy of C++ IMP::core::CoverRefined class."""
5001 
5002  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
5003 
5004  def __init__(self, ref, slack=0):
5005  """
5006  __init__(IMP::core::CoverRefined self, Refiner ref, IMP::Float slack=0) -> CoverRefined
5007  __init__(IMP::core::CoverRefined self, Refiner ref) -> CoverRefined
5008  """
5009  this = _IMP_core.new_CoverRefined(ref, slack)
5010  try:
5011  self.this.append(this)
5012  except __builtin__.Exception:
5013  self.this = this
5014 
5015  def set_slack(self, slack):
5016  """set_slack(CoverRefined self, IMP::Float slack)"""
5017  return _IMP_core.CoverRefined_set_slack(self, slack)
5018 
5019 
5020  def do_get_inputs(self, m, pis):
5021  """do_get_inputs(CoverRefined self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
5022  return _IMP_core.CoverRefined_do_get_inputs(self, m, pis)
5023 
5024 
5025  def do_get_outputs(self, m, pis):
5026  """do_get_outputs(CoverRefined self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
5027  return _IMP_core.CoverRefined_do_get_outputs(self, m, pis)
5028 
5029 
5030  def get_version_info(self):
5031  """get_version_info(CoverRefined self) -> VersionInfo"""
5032  return _IMP_core.CoverRefined_get_version_info(self)
5033 
5034 
5035  def __str__(self):
5036  """__str__(CoverRefined self) -> std::string"""
5037  return _IMP_core.CoverRefined___str__(self)
5038 
5039 
5040  def __repr__(self):
5041  """__repr__(CoverRefined self) -> std::string"""
5042  return _IMP_core.CoverRefined___repr__(self)
5043 
5044 
5045  @staticmethod
5046  def get_from(o):
5047  return _object_cast_to_CoverRefined(o)
5048 
5049 CoverRefined_swigregister = _IMP_core.CoverRefined_swigregister
5050 CoverRefined_swigregister(CoverRefined)
5051 
5052 class Cover(XYZR):
5053  """Proxy of C++ IMP::core::Cover class."""
5054 
5055  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
5056 
5057  def get_constraint(self):
5058  """get_constraint(Cover self) -> Constraint"""
5059  return _IMP_core.Cover_get_constraint(self)
5060 
5061 
5062  def __init__(self, *args):
5063  """
5064  __init__(IMP::core::Cover self) -> Cover
5065  __init__(IMP::core::Cover self, Model m, ParticleIndex id) -> Cover
5066  __init__(IMP::core::Cover self, _ParticleAdaptor d) -> Cover
5067  """
5068  this = _IMP_core.new_Cover(*args)
5069  try:
5070  self.this.append(this)
5071  except __builtin__.Exception:
5072  self.this = this
5073 
5074  def show(self, *args):
5075  """
5076  show(Cover self, _ostream out)
5077  show(Cover self)
5078  """
5079  return _IMP_core.Cover_show(self, *args)
5080 
5081 
5082  def setup_particle(*args):
5083  """
5084  setup_particle(Model m, ParticleIndex pi, _ParticleIndexesAdaptor members) -> Cover
5085  setup_particle(_ParticleAdaptor decorator, _ParticleIndexesAdaptor members) -> Cover
5086  setup_particle(Model m, ParticleIndex pi, Refiner refiner) -> Cover
5087  setup_particle(_ParticleAdaptor decorator, Refiner refiner) -> Cover
5088  """
5089  return _IMP_core.Cover_setup_particle(*args)
5090 
5091  setup_particle = staticmethod(setup_particle)
5092 
5093  def get_is_setup(*args):
5094  """
5095  get_is_setup(_ParticleAdaptor p) -> bool
5096  get_is_setup(Model m, ParticleIndex pi) -> bool
5097  """
5098  return _IMP_core.Cover_get_is_setup(*args)
5099 
5100  get_is_setup = staticmethod(get_is_setup)
5101 
5102  def add_attribute(self, *args):
5103  """
5104  add_attribute(Cover self, FloatKey k, IMP::Float v, bool opt)
5105  add_attribute(Cover self, FloatKey a0, IMP::Float a1)
5106  add_attribute(Cover self, IntKey a0, IMP::Int a1)
5107  add_attribute(Cover self, StringKey a0, IMP::String a1)
5108  add_attribute(Cover self, ParticleIndexKey a0, Particle a1)
5109  add_attribute(Cover self, ObjectKey a0, Object a1)
5110  """
5111  return _IMP_core.Cover_add_attribute(self, *args)
5112 
5113 
5114  def get_value(self, *args):
5115  """
5116  get_value(Cover self, FloatKey a0) -> IMP::Float
5117  get_value(Cover self, IntKey a0) -> IMP::Int
5118  get_value(Cover self, StringKey a0) -> IMP::String
5119  get_value(Cover self, ParticleIndexKey a0) -> Particle
5120  get_value(Cover self, ObjectKey a0) -> Object
5121  """
5122  return _IMP_core.Cover_get_value(self, *args)
5123 
5124 
5125  def set_value(self, *args):
5126  """
5127  set_value(Cover self, FloatKey a0, IMP::Float a1)
5128  set_value(Cover self, IntKey a0, IMP::Int a1)
5129  set_value(Cover self, StringKey a0, IMP::String a1)
5130  set_value(Cover self, ParticleIndexKey a0, Particle a1)
5131  set_value(Cover self, ObjectKey a0, Object a1)
5132  """
5133  return _IMP_core.Cover_set_value(self, *args)
5134 
5135 
5136  def remove_attribute(self, *args):
5137  """
5138  remove_attribute(Cover self, FloatKey a0)
5139  remove_attribute(Cover self, IntKey a0)
5140  remove_attribute(Cover self, StringKey a0)
5141  remove_attribute(Cover self, ParticleIndexKey a0)
5142  remove_attribute(Cover self, ObjectKey a0)
5143  """
5144  return _IMP_core.Cover_remove_attribute(self, *args)
5145 
5146 
5147  def has_attribute(self, *args):
5148  """
5149  has_attribute(Cover self, FloatKey a0) -> bool
5150  has_attribute(Cover self, IntKey a0) -> bool
5151  has_attribute(Cover self, StringKey a0) -> bool
5152  has_attribute(Cover self, ParticleIndexKey a0) -> bool
5153  has_attribute(Cover self, ObjectKey a0) -> bool
5154  """
5155  return _IMP_core.Cover_has_attribute(self, *args)
5156 
5157 
5158  def get_derivative(self, a0):
5159  """get_derivative(Cover self, FloatKey a0) -> double"""
5160  return _IMP_core.Cover_get_derivative(self, a0)
5161 
5162 
5163  def get_name(self):
5164  """get_name(Cover self) -> std::string"""
5165  return _IMP_core.Cover_get_name(self)
5166 
5167 
5168  def clear_caches(self):
5169  """clear_caches(Cover self)"""
5170  return _IMP_core.Cover_clear_caches(self)
5171 
5172 
5173  def set_name(self, a0):
5174  """set_name(Cover self, std::string a0)"""
5175  return _IMP_core.Cover_set_name(self, a0)
5176 
5177 
5178  def set_check_level(self, a0):
5179  """set_check_level(Cover self, IMP::CheckLevel a0)"""
5180  return _IMP_core.Cover_set_check_level(self, a0)
5181 
5182 
5183  def add_to_derivative(self, a0, a1, a2):
5184  """add_to_derivative(Cover self, FloatKey a0, double a1, DerivativeAccumulator a2)"""
5185  return _IMP_core.Cover_add_to_derivative(self, a0, a1, a2)
5186 
5187 
5188  def set_is_optimized(self, a0, a1):
5189  """set_is_optimized(Cover self, FloatKey a0, bool a1)"""
5190  return _IMP_core.Cover_set_is_optimized(self, a0, a1)
5191 
5192 
5193  def get_is_optimized(self, a0):
5194  """get_is_optimized(Cover self, FloatKey a0) -> bool"""
5195  return _IMP_core.Cover_get_is_optimized(self, a0)
5196 
5197 
5198  def get_check_level(self):
5199  """get_check_level(Cover self) -> IMP::CheckLevel"""
5200  return _IMP_core.Cover_get_check_level(self)
5201 
5202 
5203  def __eq__(self, *args):
5204  """
5205  __eq__(Cover self, Cover o) -> bool
5206  __eq__(Cover self, Particle d) -> bool
5207  """
5208  return _IMP_core.Cover___eq__(self, *args)
5209 
5210 
5211  def __ne__(self, *args):
5212  """
5213  __ne__(Cover self, Cover o) -> bool
5214  __ne__(Cover self, Particle d) -> bool
5215  """
5216  return _IMP_core.Cover___ne__(self, *args)
5217 
5218 
5219  def __le__(self, *args):
5220  """
5221  __le__(Cover self, Cover o) -> bool
5222  __le__(Cover self, Particle d) -> bool
5223  """
5224  return _IMP_core.Cover___le__(self, *args)
5225 
5226 
5227  def __lt__(self, *args):
5228  """
5229  __lt__(Cover self, Cover o) -> bool
5230  __lt__(Cover self, Particle d) -> bool
5231  """
5232  return _IMP_core.Cover___lt__(self, *args)
5233 
5234 
5235  def __ge__(self, *args):
5236  """
5237  __ge__(Cover self, Cover o) -> bool
5238  __ge__(Cover self, Particle d) -> bool
5239  """
5240  return _IMP_core.Cover___ge__(self, *args)
5241 
5242 
5243  def __gt__(self, *args):
5244  """
5245  __gt__(Cover self, Cover o) -> bool
5246  __gt__(Cover self, Particle d) -> bool
5247  """
5248  return _IMP_core.Cover___gt__(self, *args)
5249 
5250 
5251  def __hash__(self):
5252  """__hash__(Cover self) -> std::size_t"""
5253  return _IMP_core.Cover___hash__(self)
5254 
5255 
5256  def __str__(self):
5257  """__str__(Cover self) -> std::string"""
5258  return _IMP_core.Cover___str__(self)
5259 
5260 
5261  def __repr__(self):
5262  """__repr__(Cover self) -> std::string"""
5263  return _IMP_core.Cover___repr__(self)
5264 
5265  __swig_destroy__ = _IMP_core.delete_Cover
5266  __del__ = lambda self: None
5267 Cover_swigregister = _IMP_core.Cover_swigregister
5268 Cover_swigregister(Cover)
5269 
5270 def Cover_setup_particle(*args):
5271  """
5272  setup_particle(Model m, ParticleIndex pi, _ParticleIndexesAdaptor members) -> Cover
5273  setup_particle(_ParticleAdaptor decorator, _ParticleIndexesAdaptor members) -> Cover
5274  setup_particle(Model m, ParticleIndex pi, Refiner refiner) -> Cover
5275  Cover_setup_particle(_ParticleAdaptor decorator, Refiner refiner) -> Cover
5276  """
5277  return _IMP_core.Cover_setup_particle(*args)
5278 
5279 def Cover_get_is_setup(*args):
5280  """
5281  get_is_setup(_ParticleAdaptor p) -> bool
5282  Cover_get_is_setup(Model m, ParticleIndex pi) -> bool
5283  """
5284  return _IMP_core.Cover_get_is_setup(*args)
5285 
5286 class DerivativesFromRefined(IMP.SingletonModifier):
5287  """Proxy of C++ IMP::core::DerivativesFromRefined class."""
5288 
5289  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
5290 
5291  def __init__(self, *args):
5292  """
5293  __init__(IMP::core::DerivativesFromRefined self, Refiner r, IMP::FloatKeys ks) -> DerivativesFromRefined
5294  __init__(IMP::core::DerivativesFromRefined self, Refiner r) -> DerivativesFromRefined
5295  """
5296  this = _IMP_core.new_DerivativesFromRefined(*args)
5297  try:
5298  self.this.append(this)
5299  except __builtin__.Exception:
5300  self.this = this
5301 
5302  def do_get_inputs(self, m, pis):
5303  """do_get_inputs(DerivativesFromRefined self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
5304  return _IMP_core.DerivativesFromRefined_do_get_inputs(self, m, pis)
5305 
5306 
5307  def do_get_outputs(self, m, pis):
5308  """do_get_outputs(DerivativesFromRefined self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
5309  return _IMP_core.DerivativesFromRefined_do_get_outputs(self, m, pis)
5310 
5311 
5312  def get_version_info(self):
5313  """get_version_info(DerivativesFromRefined self) -> VersionInfo"""
5314  return _IMP_core.DerivativesFromRefined_get_version_info(self)
5315 
5316 
5317  def __str__(self):
5318  """__str__(DerivativesFromRefined self) -> std::string"""
5319  return _IMP_core.DerivativesFromRefined___str__(self)
5320 
5321 
5322  def __repr__(self):
5323  """__repr__(DerivativesFromRefined self) -> std::string"""
5324  return _IMP_core.DerivativesFromRefined___repr__(self)
5325 
5326 
5327  @staticmethod
5328  def get_from(o):
5329  return _object_cast_to_DerivativesFromRefined(o)
5330 
5331 DerivativesFromRefined_swigregister = _IMP_core.DerivativesFromRefined_swigregister
5332 DerivativesFromRefined_swigregister(DerivativesFromRefined)
5333 
5334 class DerivativesToRefined(IMP.SingletonModifier):
5335  """Proxy of C++ IMP::core::DerivativesToRefined class."""
5336 
5337  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
5338 
5339  def __init__(self, *args):
5340  """
5341  __init__(IMP::core::DerivativesToRefined self, Refiner r, IMP::FloatKeys ks) -> DerivativesToRefined
5342  __init__(IMP::core::DerivativesToRefined self, Refiner r) -> DerivativesToRefined
5343  """
5344  this = _IMP_core.new_DerivativesToRefined(*args)
5345  try:
5346  self.this.append(this)
5347  except __builtin__.Exception:
5348  self.this = this
5349 
5350  def do_get_inputs(self, m, pis):
5351  """do_get_inputs(DerivativesToRefined self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
5352  return _IMP_core.DerivativesToRefined_do_get_inputs(self, m, pis)
5353 
5354 
5355  def do_get_outputs(self, m, pis):
5356  """do_get_outputs(DerivativesToRefined self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
5357  return _IMP_core.DerivativesToRefined_do_get_outputs(self, m, pis)
5358 
5359 
5360  def get_version_info(self):
5361  """get_version_info(DerivativesToRefined self) -> VersionInfo"""
5362  return _IMP_core.DerivativesToRefined_get_version_info(self)
5363 
5364 
5365  def __str__(self):
5366  """__str__(DerivativesToRefined self) -> std::string"""
5367  return _IMP_core.DerivativesToRefined___str__(self)
5368 
5369 
5370  def __repr__(self):
5371  """__repr__(DerivativesToRefined self) -> std::string"""
5372  return _IMP_core.DerivativesToRefined___repr__(self)
5373 
5374 
5375  @staticmethod
5376  def get_from(o):
5377  return _object_cast_to_DerivativesToRefined(o)
5378 
5379 DerivativesToRefined_swigregister = _IMP_core.DerivativesToRefined_swigregister
5380 DerivativesToRefined_swigregister(DerivativesToRefined)
5381 
5382 class DiameterRestraint(IMP.Restraint):
5383  """Proxy of C++ IMP::core::DiameterRestraint class."""
5384 
5385  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
5386 
5387  def __init__(self, f, sc, diameter):
5388  """__init__(IMP::core::DiameterRestraint self, UnaryFunction f, SingletonContainer sc, IMP::Float diameter) -> DiameterRestraint"""
5389  this = _IMP_core.new_DiameterRestraint(f, sc, diameter)
5390  try:
5391  self.this.append(this)
5392  except __builtin__.Exception:
5393  self.this = this
5394 
5395  def do_get_inputs(self):
5396  """do_get_inputs(DiameterRestraint self) -> IMP::ModelObjectsTemp"""
5397  return _IMP_core.DiameterRestraint_do_get_inputs(self)
5398 
5399 
5400  def get_version_info(self):
5401  """get_version_info(DiameterRestraint self) -> VersionInfo"""
5402  return _IMP_core.DiameterRestraint_get_version_info(self)
5403 
5404 
5405  def do_create_decomposition(self):
5406  """do_create_decomposition(DiameterRestraint self) -> IMP::Restraints"""
5407  return _IMP_core.DiameterRestraint_do_create_decomposition(self)
5408 
5409 
5410  def do_create_current_decomposition(self):
5411  """do_create_current_decomposition(DiameterRestraint self) -> IMP::Restraints"""
5412  return _IMP_core.DiameterRestraint_do_create_current_decomposition(self)
5413 
5414 
5415  def __str__(self):
5416  """__str__(DiameterRestraint self) -> std::string"""
5417  return _IMP_core.DiameterRestraint___str__(self)
5418 
5419 
5420  def __repr__(self):
5421  """__repr__(DiameterRestraint self) -> std::string"""
5422  return _IMP_core.DiameterRestraint___repr__(self)
5423 
5424 
5425  @staticmethod
5426  def get_from(o):
5427  return _object_cast_to_DiameterRestraint(o)
5428 
5429 DiameterRestraint_swigregister = _IMP_core.DiameterRestraint_swigregister
5430 DiameterRestraint_swigregister(DiameterRestraint)
5431 
5432 class Transform(IMP.SingletonModifier):
5433  """Proxy of C++ IMP::core::Transform class."""
5434 
5435  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
5436 
5437  def __init__(self, t, ignore_non_xyz=False):
5438  """
5439  __init__(IMP::core::Transform self, Transformation3D t, bool ignore_non_xyz=False) -> Transform
5440  __init__(IMP::core::Transform self, Transformation3D t) -> Transform
5441  """
5442  this = _IMP_core.new_Transform(t, ignore_non_xyz)
5443  try:
5444  self.this.append(this)
5445  except __builtin__.Exception:
5446  self.this = this
5447 
5448  def do_get_inputs(self, m, pis):
5449  """do_get_inputs(Transform self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
5450  return _IMP_core.Transform_do_get_inputs(self, m, pis)
5451 
5452 
5453  def do_get_outputs(self, m, pis):
5454  """do_get_outputs(Transform self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
5455  return _IMP_core.Transform_do_get_outputs(self, m, pis)
5456 
5457 
5458  def get_version_info(self):
5459  """get_version_info(Transform self) -> VersionInfo"""
5460  return _IMP_core.Transform_get_version_info(self)
5461 
5462 
5463  def __str__(self):
5464  """__str__(Transform self) -> std::string"""
5465  return _IMP_core.Transform___str__(self)
5466 
5467 
5468  def __repr__(self):
5469  """__repr__(Transform self) -> std::string"""
5470  return _IMP_core.Transform___repr__(self)
5471 
5472 
5473  @staticmethod
5474  def get_from(o):
5475  return _object_cast_to_Transform(o)
5476 
5477 Transform_swigregister = _IMP_core.Transform_swigregister
5478 Transform_swigregister(Transform)
5479 
5480 class Reference(IMP.Decorator):
5481  """Proxy of C++ IMP::core::Reference class."""
5482 
5483  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
5484 
5485  def __init__(self, *args):
5486  """
5487  __init__(IMP::core::Reference self) -> Reference
5488  __init__(IMP::core::Reference self, Model m, ParticleIndex id) -> Reference
5489  __init__(IMP::core::Reference self, _ParticleAdaptor d) -> Reference
5490  """
5491  this = _IMP_core.new_Reference(*args)
5492  try:
5493  self.this.append(this)
5494  except __builtin__.Exception:
5495  self.this = this
5496 
5497  def show(self, *args):
5498  """
5499  show(Reference self, _ostream out)
5500  show(Reference self)
5501  """
5502  return _IMP_core.Reference_show(self, *args)
5503 
5504 
5505  def setup_particle(*args):
5506  """
5507  setup_particle(Model m, ParticleIndex pi, _ParticleIndexAdaptor reference) -> Reference
5508  setup_particle(_ParticleAdaptor decorator, _ParticleIndexAdaptor reference) -> Reference
5509  """
5510  return _IMP_core.Reference_setup_particle(*args)
5511 
5512  setup_particle = staticmethod(setup_particle)
5513 
5514  def get_reference_particle(self):
5515  """get_reference_particle(Reference self) -> Particle"""
5516  return _IMP_core.Reference_get_reference_particle(self)
5517 
5518 
5519  def get_is_setup(*args):
5520  """
5521  get_is_setup(_ParticleAdaptor p) -> bool
5522  get_is_setup(Model m, ParticleIndex pi) -> bool
5523  """
5524  return _IMP_core.Reference_get_is_setup(*args)
5525 
5526  get_is_setup = staticmethod(get_is_setup)
5527 
5528  def get_reference_key():
5529  """get_reference_key() -> ParticleIndexKey"""
5530  return _IMP_core.Reference_get_reference_key()
5531 
5532  get_reference_key = staticmethod(get_reference_key)
5533 
5534  def add_attribute(self, *args):
5535  """
5536  add_attribute(Reference self, FloatKey k, IMP::Float v, bool opt)
5537  add_attribute(Reference self, FloatKey a0, IMP::Float a1)
5538  add_attribute(Reference self, IntKey a0, IMP::Int a1)
5539  add_attribute(Reference self, StringKey a0, IMP::String a1)
5540  add_attribute(Reference self, ParticleIndexKey a0, Particle a1)
5541  add_attribute(Reference self, ObjectKey a0, Object a1)
5542  """
5543  return _IMP_core.Reference_add_attribute(self, *args)
5544 
5545 
5546  def get_value(self, *args):
5547  """
5548  get_value(Reference self, FloatKey a0) -> IMP::Float
5549  get_value(Reference self, IntKey a0) -> IMP::Int
5550  get_value(Reference self, StringKey a0) -> IMP::String
5551  get_value(Reference self, ParticleIndexKey a0) -> Particle
5552  get_value(Reference self, ObjectKey a0) -> Object
5553  """
5554  return _IMP_core.Reference_get_value(self, *args)
5555 
5556 
5557  def set_value(self, *args):
5558  """
5559  set_value(Reference self, FloatKey a0, IMP::Float a1)
5560  set_value(Reference self, IntKey a0, IMP::Int a1)
5561  set_value(Reference self, StringKey a0, IMP::String a1)
5562  set_value(Reference self, ParticleIndexKey a0, Particle a1)
5563  set_value(Reference self, ObjectKey a0, Object a1)
5564  """
5565  return _IMP_core.Reference_set_value(self, *args)
5566 
5567 
5568  def remove_attribute(self, *args):
5569  """
5570  remove_attribute(Reference self, FloatKey a0)
5571  remove_attribute(Reference self, IntKey a0)
5572  remove_attribute(Reference self, StringKey a0)
5573  remove_attribute(Reference self, ParticleIndexKey a0)
5574  remove_attribute(Reference self, ObjectKey a0)
5575  """
5576  return _IMP_core.Reference_remove_attribute(self, *args)
5577 
5578 
5579  def has_attribute(self, *args):
5580  """
5581  has_attribute(Reference self, FloatKey a0) -> bool
5582  has_attribute(Reference self, IntKey a0) -> bool
5583  has_attribute(Reference self, StringKey a0) -> bool
5584  has_attribute(Reference self, ParticleIndexKey a0) -> bool
5585  has_attribute(Reference self, ObjectKey a0) -> bool
5586  """
5587  return _IMP_core.Reference_has_attribute(self, *args)
5588 
5589 
5590  def get_derivative(self, a0):
5591  """get_derivative(Reference self, FloatKey a0) -> double"""
5592  return _IMP_core.Reference_get_derivative(self, a0)
5593 
5594 
5595  def get_name(self):
5596  """get_name(Reference self) -> std::string"""
5597  return _IMP_core.Reference_get_name(self)
5598 
5599 
5600  def clear_caches(self):
5601  """clear_caches(Reference self)"""
5602  return _IMP_core.Reference_clear_caches(self)
5603 
5604 
5605  def set_name(self, a0):
5606  """set_name(Reference self, std::string a0)"""
5607  return _IMP_core.Reference_set_name(self, a0)
5608 
5609 
5610  def set_check_level(self, a0):
5611  """set_check_level(Reference self, IMP::CheckLevel a0)"""
5612  return _IMP_core.Reference_set_check_level(self, a0)
5613 
5614 
5615  def add_to_derivative(self, a0, a1, a2):
5616  """add_to_derivative(Reference self, FloatKey a0, double a1, DerivativeAccumulator a2)"""
5617  return _IMP_core.Reference_add_to_derivative(self, a0, a1, a2)
5618 
5619 
5620  def set_is_optimized(self, a0, a1):
5621  """set_is_optimized(Reference self, FloatKey a0, bool a1)"""
5622  return _IMP_core.Reference_set_is_optimized(self, a0, a1)
5623 
5624 
5625  def get_is_optimized(self, a0):
5626  """get_is_optimized(Reference self, FloatKey a0) -> bool"""
5627  return _IMP_core.Reference_get_is_optimized(self, a0)
5628 
5629 
5630  def get_check_level(self):
5631  """get_check_level(Reference self) -> IMP::CheckLevel"""
5632  return _IMP_core.Reference_get_check_level(self)
5633 
5634 
5635  def __eq__(self, *args):
5636  """
5637  __eq__(Reference self, Reference o) -> bool
5638  __eq__(Reference self, Particle d) -> bool
5639  """
5640  return _IMP_core.Reference___eq__(self, *args)
5641 
5642 
5643  def __ne__(self, *args):
5644  """
5645  __ne__(Reference self, Reference o) -> bool
5646  __ne__(Reference self, Particle d) -> bool
5647  """
5648  return _IMP_core.Reference___ne__(self, *args)
5649 
5650 
5651  def __le__(self, *args):
5652  """
5653  __le__(Reference self, Reference o) -> bool
5654  __le__(Reference self, Particle d) -> bool
5655  """
5656  return _IMP_core.Reference___le__(self, *args)
5657 
5658 
5659  def __lt__(self, *args):
5660  """
5661  __lt__(Reference self, Reference o) -> bool
5662  __lt__(Reference self, Particle d) -> bool
5663  """
5664  return _IMP_core.Reference___lt__(self, *args)
5665 
5666 
5667  def __ge__(self, *args):
5668  """
5669  __ge__(Reference self, Reference o) -> bool
5670  __ge__(Reference self, Particle d) -> bool
5671  """
5672  return _IMP_core.Reference___ge__(self, *args)
5673 
5674 
5675  def __gt__(self, *args):
5676  """
5677  __gt__(Reference self, Reference o) -> bool
5678  __gt__(Reference self, Particle d) -> bool
5679  """
5680  return _IMP_core.Reference___gt__(self, *args)
5681 
5682 
5683  def __hash__(self):
5684  """__hash__(Reference self) -> std::size_t"""
5685  return _IMP_core.Reference___hash__(self)
5686 
5687 
5688  def __str__(self):
5689  """__str__(Reference self) -> std::string"""
5690  return _IMP_core.Reference___str__(self)
5691 
5692 
5693  def __repr__(self):
5694  """__repr__(Reference self) -> std::string"""
5695  return _IMP_core.Reference___repr__(self)
5696 
5697  __swig_destroy__ = _IMP_core.delete_Reference
5698  __del__ = lambda self: None
5699 Reference_swigregister = _IMP_core.Reference_swigregister
5700 Reference_swigregister(Reference)
5701 
5702 def Reference_setup_particle(*args):
5703  """
5704  setup_particle(Model m, ParticleIndex pi, _ParticleIndexAdaptor reference) -> Reference
5705  Reference_setup_particle(_ParticleAdaptor decorator, _ParticleIndexAdaptor reference) -> Reference
5706  """
5707  return _IMP_core.Reference_setup_particle(*args)
5708 
5709 def Reference_get_is_setup(*args):
5710  """
5711  get_is_setup(_ParticleAdaptor p) -> bool
5712  Reference_get_is_setup(Model m, ParticleIndex pi) -> bool
5713  """
5714  return _IMP_core.Reference_get_is_setup(*args)
5715 
5716 def Reference_get_reference_key():
5717  """Reference_get_reference_key() -> ParticleIndexKey"""
5718  return _IMP_core.Reference_get_reference_key()
5719 
5720 class TransformationAndReflectionSymmetry(IMP.SingletonModifier):
5721  """Proxy of C++ IMP::core::TransformationAndReflectionSymmetry class."""
5722 
5723  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
5724 
5725  def __init__(self, t, r):
5726  """__init__(IMP::core::TransformationAndReflectionSymmetry self, Transformation3D t, Reflection3D r) -> TransformationAndReflectionSymmetry"""
5727  this = _IMP_core.new_TransformationAndReflectionSymmetry(t, r)
5728  try:
5729  self.this.append(this)
5730  except __builtin__.Exception:
5731  self.this = this
5732 
5733  def do_get_inputs(self, m, pis):
5734  """do_get_inputs(TransformationAndReflectionSymmetry self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
5735  return _IMP_core.TransformationAndReflectionSymmetry_do_get_inputs(self, m, pis)
5736 
5737 
5738  def do_get_outputs(self, m, pis):
5739  """do_get_outputs(TransformationAndReflectionSymmetry self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
5740  return _IMP_core.TransformationAndReflectionSymmetry_do_get_outputs(self, m, pis)
5741 
5742 
5743  def get_version_info(self):
5744  """get_version_info(TransformationAndReflectionSymmetry self) -> VersionInfo"""
5745  return _IMP_core.TransformationAndReflectionSymmetry_get_version_info(self)
5746 
5747 
5748  def __str__(self):
5749  """__str__(TransformationAndReflectionSymmetry self) -> std::string"""
5750  return _IMP_core.TransformationAndReflectionSymmetry___str__(self)
5751 
5752 
5753  def __repr__(self):
5754  """__repr__(TransformationAndReflectionSymmetry self) -> std::string"""
5755  return _IMP_core.TransformationAndReflectionSymmetry___repr__(self)
5756 
5757 
5758  @staticmethod
5759  def get_from(o):
5760  return _object_cast_to_TransformationAndReflectionSymmetry(o)
5761 
5762 TransformationAndReflectionSymmetry_swigregister = _IMP_core.TransformationAndReflectionSymmetry_swigregister
5763 TransformationAndReflectionSymmetry_swigregister(TransformationAndReflectionSymmetry)
5764 
5765 class TransformationSymmetry(IMP.SingletonModifier):
5766  """Proxy of C++ IMP::core::TransformationSymmetry class."""
5767 
5768  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
5769 
5770  def __init__(self, *args):
5771  """
5772  __init__(IMP::core::TransformationSymmetry self, Transformation3D t) -> TransformationSymmetry
5773  __init__(IMP::core::TransformationSymmetry self, ParticleIndex rb_pi) -> TransformationSymmetry
5774  """
5775  this = _IMP_core.new_TransformationSymmetry(*args)
5776  try:
5777  self.this.append(this)
5778  except __builtin__.Exception:
5779  self.this = this
5780 
5781  def get_transformation(self):
5782  """get_transformation(TransformationSymmetry self) -> Transformation3D"""
5783  return _IMP_core.TransformationSymmetry_get_transformation(self)
5784 
5785 
5786  def set_transformation(self, t):
5787  """set_transformation(TransformationSymmetry self, Transformation3D t)"""
5788  return _IMP_core.TransformationSymmetry_set_transformation(self, t)
5789 
5790 
5791  def do_get_inputs(self, m, pis):
5792  """do_get_inputs(TransformationSymmetry self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
5793  return _IMP_core.TransformationSymmetry_do_get_inputs(self, m, pis)
5794 
5795 
5796  def do_get_outputs(self, m, pis):
5797  """do_get_outputs(TransformationSymmetry self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
5798  return _IMP_core.TransformationSymmetry_do_get_outputs(self, m, pis)
5799 
5800 
5801  def get_version_info(self):
5802  """get_version_info(TransformationSymmetry self) -> VersionInfo"""
5803  return _IMP_core.TransformationSymmetry_get_version_info(self)
5804 
5805 
5806  def __str__(self):
5807  """__str__(TransformationSymmetry self) -> std::string"""
5808  return _IMP_core.TransformationSymmetry___str__(self)
5809 
5810 
5811  def __repr__(self):
5812  """__repr__(TransformationSymmetry self) -> std::string"""
5813  return _IMP_core.TransformationSymmetry___repr__(self)
5814 
5815 
5816  @staticmethod
5817  def get_from(o):
5818  return _object_cast_to_TransformationSymmetry(o)
5819 
5820 TransformationSymmetry_swigregister = _IMP_core.TransformationSymmetry_swigregister
5821 TransformationSymmetry_swigregister(TransformationSymmetry)
5822 
5823 class TransformationSymmetryMover(MonteCarloMover):
5824  """Proxy of C++ IMP::core::TransformationSymmetryMover class."""
5825 
5826  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
5827 
5828  def __init__(self, m, symm, pivot, max_translation, max_rotation):
5829  """__init__(IMP::core::TransformationSymmetryMover self, Model m, TransformationSymmetry symm, ParticleIndex pivot, IMP::Float max_translation, IMP::Float max_rotation) -> TransformationSymmetryMover"""
5830  this = _IMP_core.new_TransformationSymmetryMover(m, symm, pivot, max_translation, max_rotation)
5831  try:
5832  self.this.append(this)
5833  except __builtin__.Exception:
5834  self.this = this
5835 
5836  def set_maximum_translation(self, mt):
5837  """set_maximum_translation(TransformationSymmetryMover self, IMP::Float mt)"""
5838  return _IMP_core.TransformationSymmetryMover_set_maximum_translation(self, mt)
5839 
5840 
5841  def set_maximum_rotation(self, mr):
5842  """set_maximum_rotation(TransformationSymmetryMover self, IMP::Float mr)"""
5843  return _IMP_core.TransformationSymmetryMover_set_maximum_rotation(self, mr)
5844 
5845 
5846  def get_maximum_translation(self):
5847  """get_maximum_translation(TransformationSymmetryMover self) -> IMP::Float"""
5848  return _IMP_core.TransformationSymmetryMover_get_maximum_translation(self)
5849 
5850 
5851  def get_maximum_rotation(self):
5852  """get_maximum_rotation(TransformationSymmetryMover self) -> IMP::Float"""
5853  return _IMP_core.TransformationSymmetryMover_get_maximum_rotation(self)
5854 
5855 
5856  def get_version_info(self):
5857  """get_version_info(TransformationSymmetryMover self) -> VersionInfo"""
5858  return _IMP_core.TransformationSymmetryMover_get_version_info(self)
5859 
5860 
5861  def __str__(self):
5862  """__str__(TransformationSymmetryMover self) -> std::string"""
5863  return _IMP_core.TransformationSymmetryMover___str__(self)
5864 
5865 
5866  def __repr__(self):
5867  """__repr__(TransformationSymmetryMover self) -> std::string"""
5868  return _IMP_core.TransformationSymmetryMover___repr__(self)
5869 
5870 
5871  @staticmethod
5872  def get_from(o):
5873  return _object_cast_to_TransformationSymmetryMover(o)
5874 
5875 TransformationSymmetryMover_swigregister = _IMP_core.TransformationSymmetryMover_swigregister
5876 TransformationSymmetryMover_swigregister(TransformationSymmetryMover)
5877 
5878 class DihedralRestraint(IMP.Restraint):
5879  """Proxy of C++ IMP::core::DihedralRestraint class."""
5880 
5881  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
5882 
5883  def __init__(self, m, score_func, p1, p2, p3, p4):
5884  """__init__(IMP::core::DihedralRestraint self, Model m, UnaryFunction score_func, _ParticleIndexAdaptor p1, _ParticleIndexAdaptor p2, _ParticleIndexAdaptor p3, _ParticleIndexAdaptor p4) -> DihedralRestraint"""
5885  this = _IMP_core.new_DihedralRestraint(m, score_func, p1, p2, p3, p4)
5886  try:
5887  self.this.append(this)
5888  except __builtin__.Exception:
5889  self.this = this
5890 
5891  def do_get_inputs(self):
5892  """do_get_inputs(DihedralRestraint self) -> IMP::ModelObjectsTemp"""
5893  return _IMP_core.DihedralRestraint_do_get_inputs(self)
5894 
5895 
5896  def get_version_info(self):
5897  """get_version_info(DihedralRestraint self) -> VersionInfo"""
5898  return _IMP_core.DihedralRestraint_get_version_info(self)
5899 
5900 
5901  def __str__(self):
5902  """__str__(DihedralRestraint self) -> std::string"""
5903  return _IMP_core.DihedralRestraint___str__(self)
5904 
5905 
5906  def __repr__(self):
5907  """__repr__(DihedralRestraint self) -> std::string"""
5908  return _IMP_core.DihedralRestraint___repr__(self)
5909 
5910 
5911  @staticmethod
5912  def get_from(o):
5913  return _object_cast_to_DihedralRestraint(o)
5914 
5915 DihedralRestraint_swigregister = _IMP_core.DihedralRestraint_swigregister
5916 DihedralRestraint_swigregister(DihedralRestraint)
5917 
5918 class DistancePairScore(IMP.PairScore):
5919  """Proxy of C++ IMP::core::DistancePairScore class."""
5920 
5921  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
5922 
5923  def __init__(self, *args):
5924  """
5925  __init__(IMP::core::DistancePairScore self, UnaryFunction uf, std::string name) -> DistancePairScore
5926  __init__(IMP::core::DistancePairScore self, UnaryFunction uf) -> DistancePairScore
5927  """
5928  this = _IMP_core.new_DistancePairScore(*args)
5929  try:
5930  self.this.append(this)
5931  except __builtin__.Exception:
5932  self.this = this
5933 
5934  def do_get_inputs(self, m, pis):
5935  """do_get_inputs(DistancePairScore self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
5936  return _IMP_core.DistancePairScore_do_get_inputs(self, m, pis)
5937 
5938 
5939  def get_version_info(self):
5940  """get_version_info(DistancePairScore self) -> VersionInfo"""
5941  return _IMP_core.DistancePairScore_get_version_info(self)
5942 
5943 
5944  def __str__(self):
5945  """__str__(DistancePairScore self) -> std::string"""
5946  return _IMP_core.DistancePairScore___str__(self)
5947 
5948 
5949  def __repr__(self):
5950  """__repr__(DistancePairScore self) -> std::string"""
5951  return _IMP_core.DistancePairScore___repr__(self)
5952 
5953 
5954  @staticmethod
5955  def get_from(o):
5956  return _object_cast_to_DistancePairScore(o)
5957 
5958 DistancePairScore_swigregister = _IMP_core.DistancePairScore_swigregister
5959 DistancePairScore_swigregister(DistancePairScore)
5960 
5961 class HarmonicDistancePairScore(IMP.PairScore):
5962  """Proxy of C++ IMP::core::HarmonicDistancePairScore class."""
5963 
5964  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
5965 
5966  def __init__(self, *args):
5967  """
5968  __init__(IMP::core::HarmonicDistancePairScore self, double x0, double k, std::string name) -> HarmonicDistancePairScore
5969  __init__(IMP::core::HarmonicDistancePairScore self, double x0, double k) -> HarmonicDistancePairScore
5970  """
5971  this = _IMP_core.new_HarmonicDistancePairScore(*args)
5972  try:
5973  self.this.append(this)
5974  except __builtin__.Exception:
5975  self.this = this
5976 
5977  def do_get_inputs(self, m, pis):
5978  """do_get_inputs(HarmonicDistancePairScore self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
5979  return _IMP_core.HarmonicDistancePairScore_do_get_inputs(self, m, pis)
5980 
5981 
5982  def get_version_info(self):
5983  """get_version_info(HarmonicDistancePairScore self) -> VersionInfo"""
5984  return _IMP_core.HarmonicDistancePairScore_get_version_info(self)
5985 
5986 
5987  def __str__(self):
5988  """__str__(HarmonicDistancePairScore self) -> std::string"""
5989  return _IMP_core.HarmonicDistancePairScore___str__(self)
5990 
5991 
5992  def __repr__(self):
5993  """__repr__(HarmonicDistancePairScore self) -> std::string"""
5994  return _IMP_core.HarmonicDistancePairScore___repr__(self)
5995 
5996 
5997  @staticmethod
5998  def get_from(o):
5999  return _object_cast_to_HarmonicDistancePairScore(o)
6000 
6001 HarmonicDistancePairScore_swigregister = _IMP_core.HarmonicDistancePairScore_swigregister
6002 HarmonicDistancePairScore_swigregister(HarmonicDistancePairScore)
6003 
6004 class DistanceRestraint(IMP.Restraint):
6005  """Proxy of C++ IMP::core::DistanceRestraint class."""
6006 
6007  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
6008 
6009  def __init__(self, *args):
6010  """
6011  __init__(IMP::core::DistanceRestraint self, Model m, UnaryFunction score_func, _ParticleIndexAdaptor a, _ParticleIndexAdaptor b, std::string name) -> DistanceRestraint
6012  __init__(IMP::core::DistanceRestraint self, Model m, UnaryFunction score_func, _ParticleIndexAdaptor a, _ParticleIndexAdaptor b) -> DistanceRestraint
6013  """
6014  this = _IMP_core.new_DistanceRestraint(*args)
6015  try:
6016  self.this.append(this)
6017  except __builtin__.Exception:
6018  self.this = this
6019 
6020  def get_version_info(self):
6021  """get_version_info(DistanceRestraint self) -> VersionInfo"""
6022  return _IMP_core.DistanceRestraint_get_version_info(self)
6023 
6024 
6025  def __str__(self):
6026  """__str__(DistanceRestraint self) -> std::string"""
6027  return _IMP_core.DistanceRestraint___str__(self)
6028 
6029 
6030  def __repr__(self):
6031  """__repr__(DistanceRestraint self) -> std::string"""
6032  return _IMP_core.DistanceRestraint___repr__(self)
6033 
6034 
6035  @staticmethod
6036  def get_from(o):
6037  return _object_cast_to_DistanceRestraint(o)
6038 
6039 DistanceRestraint_swigregister = _IMP_core.DistanceRestraint_swigregister
6040 DistanceRestraint_swigregister(DistanceRestraint)
6041 
6042 class SphereDistanceToSingletonScore(IMP.SingletonScore):
6043  """Proxy of C++ IMP::core::SphereDistanceToSingletonScore class."""
6044 
6045  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
6046 
6047  def __init__(self, f, pt):
6048  """__init__(IMP::core::SphereDistanceToSingletonScore self, UnaryFunction f, Vector3D pt) -> SphereDistanceToSingletonScore"""
6049  this = _IMP_core.new_SphereDistanceToSingletonScore(f, pt)
6050  try:
6051  self.this.append(this)
6052  except __builtin__.Exception:
6053  self.this = this
6054 
6055  def do_get_inputs(self, m, pis):
6056  """do_get_inputs(SphereDistanceToSingletonScore self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
6057  return _IMP_core.SphereDistanceToSingletonScore_do_get_inputs(self, m, pis)
6058 
6059 
6060  def get_version_info(self):
6061  """get_version_info(SphereDistanceToSingletonScore self) -> VersionInfo"""
6062  return _IMP_core.SphereDistanceToSingletonScore_get_version_info(self)
6063 
6064 
6065  def __str__(self):
6066  """__str__(SphereDistanceToSingletonScore self) -> std::string"""
6067  return _IMP_core.SphereDistanceToSingletonScore___str__(self)
6068 
6069 
6070  def __repr__(self):
6071  """__repr__(SphereDistanceToSingletonScore self) -> std::string"""
6072  return _IMP_core.SphereDistanceToSingletonScore___repr__(self)
6073 
6074 
6075  @staticmethod
6076  def get_from(o):
6077  return _object_cast_to_SphereDistanceToSingletonScore(o)
6078 
6079 SphereDistanceToSingletonScore_swigregister = _IMP_core.SphereDistanceToSingletonScore_swigregister
6080 SphereDistanceToSingletonScore_swigregister(SphereDistanceToSingletonScore)
6081 
6082 class ExcludedVolumeRestraint(IMP.Restraint):
6083  """Proxy of C++ IMP::core::ExcludedVolumeRestraint class."""
6084 
6085  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
6086 
6087  def __init__(self, *args):
6088  """
6089  __init__(IMP::core::ExcludedVolumeRestraint self, _SingletonContainerAdaptor sc, double k=1, double slack=10, std::string name) -> ExcludedVolumeRestraint
6090  __init__(IMP::core::ExcludedVolumeRestraint self, _SingletonContainerAdaptor sc, double k=1, double slack=10) -> ExcludedVolumeRestraint
6091  __init__(IMP::core::ExcludedVolumeRestraint self, _SingletonContainerAdaptor sc, double k=1) -> ExcludedVolumeRestraint
6092  __init__(IMP::core::ExcludedVolumeRestraint self, _SingletonContainerAdaptor sc) -> ExcludedVolumeRestraint
6093  """
6094  this = _IMP_core.new_ExcludedVolumeRestraint(*args)
6095  try:
6096  self.this.append(this)
6097  except __builtin__.Exception:
6098  self.this = this
6099 
6100  def do_get_inputs(self):
6101  """do_get_inputs(ExcludedVolumeRestraint self) -> IMP::ModelObjectsTemp"""
6102  return _IMP_core.ExcludedVolumeRestraint_do_get_inputs(self)
6103 
6104 
6105  def get_version_info(self):
6106  """get_version_info(ExcludedVolumeRestraint self) -> VersionInfo"""
6107  return _IMP_core.ExcludedVolumeRestraint_get_version_info(self)
6108 
6109 
6110  def do_create_decomposition(self):
6111  """do_create_decomposition(ExcludedVolumeRestraint self) -> IMP::Restraints"""
6112  return _IMP_core.ExcludedVolumeRestraint_do_create_decomposition(self)
6113 
6114 
6115  def do_create_current_decomposition(self):
6116  """do_create_current_decomposition(ExcludedVolumeRestraint self) -> IMP::Restraints"""
6117  return _IMP_core.ExcludedVolumeRestraint_do_create_current_decomposition(self)
6118 
6119 
6120  def get_indexes(self):
6121  """get_indexes(ExcludedVolumeRestraint self) -> IMP::ParticleIndexPairs const &"""
6122  return _IMP_core.ExcludedVolumeRestraint_get_indexes(self)
6123 
6124 
6125  def remove_pair_filter(self, d):
6126  """remove_pair_filter(ExcludedVolumeRestraint self, PairPredicate d)"""
6127  return _IMP_core.ExcludedVolumeRestraint_remove_pair_filter(self, d)
6128 
6129 
6130  def remove_pair_filters(self, d):
6131  """remove_pair_filters(ExcludedVolumeRestraint self, IMP::PairPredicates const & d)"""
6132  return _IMP_core.ExcludedVolumeRestraint_remove_pair_filters(self, d)
6133 
6134 
6135  def set_pair_filters(self, ps):
6136  """set_pair_filters(ExcludedVolumeRestraint self, IMP::PairPredicates const & ps)"""
6137  return _IMP_core.ExcludedVolumeRestraint_set_pair_filters(self, ps)
6138 
6139 
6140  def set_pair_filters_order(self, objs):
6141  """set_pair_filters_order(ExcludedVolumeRestraint self, IMP::PairPredicates const & objs)"""
6142  return _IMP_core.ExcludedVolumeRestraint_set_pair_filters_order(self, objs)
6143 
6144 
6145  def add_pair_filter(self, obj):
6146  """add_pair_filter(ExcludedVolumeRestraint self, PairPredicate obj) -> unsigned int"""
6147  return _IMP_core.ExcludedVolumeRestraint_add_pair_filter(self, obj)
6148 
6149 
6150  def add_pair_filters(self, objs):
6151  """add_pair_filters(ExcludedVolumeRestraint self, IMP::PairPredicates const & objs)"""
6152  return _IMP_core.ExcludedVolumeRestraint_add_pair_filters(self, objs)
6153 
6154 
6155  def clear_pair_filters(self):
6156  """clear_pair_filters(ExcludedVolumeRestraint self)"""
6157  return _IMP_core.ExcludedVolumeRestraint_clear_pair_filters(self)
6158 
6159 
6160  def get_number_of_pair_filters(self):
6161  """get_number_of_pair_filters(ExcludedVolumeRestraint self) -> unsigned int"""
6162  return _IMP_core.ExcludedVolumeRestraint_get_number_of_pair_filters(self)
6163 
6164 
6165  def get_has_pair_filters(self):
6166  """get_has_pair_filters(ExcludedVolumeRestraint self) -> bool"""
6167  return _IMP_core.ExcludedVolumeRestraint_get_has_pair_filters(self)
6168 
6169 
6170  def get_pair_filter(self, i):
6171  """get_pair_filter(ExcludedVolumeRestraint self, unsigned int i) -> PairPredicate"""
6172  return _IMP_core.ExcludedVolumeRestraint_get_pair_filter(self, i)
6173 
6174 
6175  def get_pair_filters(self):
6176  """get_pair_filters(ExcludedVolumeRestraint self) -> IMP::PairPredicates"""
6177  return _IMP_core.ExcludedVolumeRestraint_get_pair_filters(self)
6178 
6179 
6180  def reserve_pair_filters(self, sz):
6181  """reserve_pair_filters(ExcludedVolumeRestraint self, unsigned int sz)"""
6182  return _IMP_core.ExcludedVolumeRestraint_reserve_pair_filters(self, sz)
6183 
6184 
6185  def __str__(self):
6186  """__str__(ExcludedVolumeRestraint self) -> std::string"""
6187  return _IMP_core.ExcludedVolumeRestraint___str__(self)
6188 
6189 
6190  def __repr__(self):
6191  """__repr__(ExcludedVolumeRestraint self) -> std::string"""
6192  return _IMP_core.ExcludedVolumeRestraint___repr__(self)
6193 
6194 
6195  @staticmethod
6196  def get_from(o):
6197  return _object_cast_to_ExcludedVolumeRestraint(o)
6198 
6199 ExcludedVolumeRestraint_swigregister = _IMP_core.ExcludedVolumeRestraint_swigregister
6200 ExcludedVolumeRestraint_swigregister(ExcludedVolumeRestraint)
6201 
6202 class FixedRefiner(IMP.Refiner):
6203  """Proxy of C++ IMP::core::FixedRefiner class."""
6204 
6205  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
6206 
6207  def __init__(self, *args):
6208  """
6209  __init__(IMP::core::FixedRefiner self, IMP::ParticlesTemp const & ps) -> FixedRefiner
6210  __init__(IMP::core::FixedRefiner self, Model m, IMP::ParticleIndexes const & pis) -> FixedRefiner
6211  """
6212  this = _IMP_core.new_FixedRefiner(*args)
6213  try:
6214  self.this.append(this)
6215  except __builtin__.Exception:
6216  self.this = this
6217 
6218  def do_get_inputs(self, m, pis):
6219  """do_get_inputs(FixedRefiner self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
6220  return _IMP_core.FixedRefiner_do_get_inputs(self, m, pis)
6221 
6222 
6223  def get_version_info(self):
6224  """get_version_info(FixedRefiner self) -> VersionInfo"""
6225  return _IMP_core.FixedRefiner_get_version_info(self)
6226 
6227 
6228  def __str__(self):
6229  """__str__(FixedRefiner self) -> std::string"""
6230  return _IMP_core.FixedRefiner___str__(self)
6231 
6232 
6233  def __repr__(self):
6234  """__repr__(FixedRefiner self) -> std::string"""
6235  return _IMP_core.FixedRefiner___repr__(self)
6236 
6237 
6238  @staticmethod
6239  def get_from(o):
6240  return _object_cast_to_FixedRefiner(o)
6241 
6242 FixedRefiner_swigregister = _IMP_core.FixedRefiner_swigregister
6243 FixedRefiner_swigregister(FixedRefiner)
6244 
6245 class GridClosePairsFinder(ClosePairsFinder):
6246  """Proxy of C++ IMP::core::GridClosePairsFinder class."""
6247 
6248  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
6249 
6250  def __init__(self):
6251  """__init__(IMP::core::GridClosePairsFinder self) -> GridClosePairsFinder"""
6252  this = _IMP_core.new_GridClosePairsFinder()
6253  try:
6254  self.this.append(this)
6255  except __builtin__.Exception:
6256  self.this = this
6257 
6258  def get_close_pairs(self, *args):
6259  """
6260  get_close_pairs(GridClosePairsFinder self, IMP::algebra::BoundingBox3Ds const & bbs) -> IMP::IntPairs
6261  get_close_pairs(GridClosePairsFinder self, IMP::algebra::BoundingBox3Ds const & bas, IMP::algebra::BoundingBox3Ds const & bbs) -> IMP::IntPairs
6262  get_close_pairs(GridClosePairsFinder self, Model m, IMP::ParticleIndexes const & pc) -> IMP::ParticleIndexPairs
6263  get_close_pairs(GridClosePairsFinder self, Model m, IMP::ParticleIndexes const & pca, IMP::ParticleIndexes const & pcb) -> IMP::ParticleIndexPairs
6264  """
6265  return _IMP_core.GridClosePairsFinder_get_close_pairs(self, *args)
6266 
6267 
6268  def do_get_inputs(self, m, pis):
6269  """do_get_inputs(GridClosePairsFinder self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
6270  return _IMP_core.GridClosePairsFinder_do_get_inputs(self, m, pis)
6271 
6272 
6273  def get_version_info(self):
6274  """get_version_info(GridClosePairsFinder self) -> VersionInfo"""
6275  return _IMP_core.GridClosePairsFinder_get_version_info(self)
6276 
6277 
6278  def __str__(self):
6279  """__str__(GridClosePairsFinder self) -> std::string"""
6280  return _IMP_core.GridClosePairsFinder___str__(self)
6281 
6282 
6283  def __repr__(self):
6284  """__repr__(GridClosePairsFinder self) -> std::string"""
6285  return _IMP_core.GridClosePairsFinder___repr__(self)
6286 
6287 
6288  @staticmethod
6289  def get_from(o):
6290  return _object_cast_to_GridClosePairsFinder(o)
6291 
6292 GridClosePairsFinder_swigregister = _IMP_core.GridClosePairsFinder_swigregister
6293 GridClosePairsFinder_swigregister(GridClosePairsFinder)
6294 
6295 class Harmonic(IMP.UnaryFunction):
6296  """Proxy of C++ IMP::core::Harmonic class."""
6297 
6298  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
6299 
6300  def __init__(self, mean, k):
6301  """__init__(IMP::core::Harmonic self, IMP::Float mean, IMP::Float k) -> Harmonic"""
6302  this = _IMP_core.new_Harmonic(mean, k)
6303  try:
6304  self.this.append(this)
6305  except __builtin__.Exception:
6306  self.this = this
6307 
6308  def get_version_info(self):
6309  """get_version_info(Harmonic self) -> VersionInfo"""
6310  return _IMP_core.Harmonic_get_version_info(self)
6311 
6312 
6313  def get_mean(self):
6314  """get_mean(Harmonic self) -> IMP::Float"""
6315  return _IMP_core.Harmonic_get_mean(self)
6316 
6317 
6318  def get_k(self):
6319  """get_k(Harmonic self) -> IMP::Float"""
6320  return _IMP_core.Harmonic_get_k(self)
6321 
6322 
6323  def set_mean(self, mean):
6324  """set_mean(Harmonic self, IMP::Float mean)"""
6325  return _IMP_core.Harmonic_set_mean(self, mean)
6326 
6327 
6328  def set_k(self, k):
6329  """set_k(Harmonic self, IMP::Float k)"""
6330  return _IMP_core.Harmonic_set_k(self, k)
6331 
6332 
6333  def get_k_from_standard_deviation(sd, t=297.15):
6334  """
6335  get_k_from_standard_deviation(IMP::Float sd, IMP::Float t=297.15) -> IMP::Float
6336  get_k_from_standard_deviation(IMP::Float sd) -> IMP::Float
6337  """
6338  return _IMP_core.Harmonic_get_k_from_standard_deviation(sd, t)
6339 
6340  get_k_from_standard_deviation = staticmethod(get_k_from_standard_deviation)
6341 
6342  def __str__(self):
6343  """__str__(Harmonic self) -> std::string"""
6344  return _IMP_core.Harmonic___str__(self)
6345 
6346 
6347  def __repr__(self):
6348  """__repr__(Harmonic self) -> std::string"""
6349  return _IMP_core.Harmonic___repr__(self)
6350 
6351 
6352  @staticmethod
6353  def get_from(o):
6354  return _object_cast_to_Harmonic(o)
6355 
6356 Harmonic_swigregister = _IMP_core.Harmonic_swigregister
6357 Harmonic_swigregister(Harmonic)
6358 
6359 def Harmonic_get_k_from_standard_deviation(sd, t=297.15):
6360  """
6361  get_k_from_standard_deviation(IMP::Float sd, IMP::Float t=297.15) -> IMP::Float
6362  Harmonic_get_k_from_standard_deviation(IMP::Float sd) -> IMP::Float
6363  """
6364  return _IMP_core.Harmonic_get_k_from_standard_deviation(sd, t)
6365 
6366 class HarmonicWell(IMP.UnaryFunction):
6367  """Proxy of C++ IMP::core::HarmonicWell class."""
6368 
6369  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
6370 
6371  def __init__(self, well, k):
6372  """__init__(IMP::core::HarmonicWell self, IMP::FloatRange const & well, double k) -> HarmonicWell"""
6373  this = _IMP_core.new_HarmonicWell(well, k)
6374  try:
6375  self.this.append(this)
6376  except __builtin__.Exception:
6377  self.this = this
6378 
6379  def get_version_info(self):
6380  """get_version_info(HarmonicWell self) -> VersionInfo"""
6381  return _IMP_core.HarmonicWell_get_version_info(self)
6382 
6383 
6384  def __str__(self):
6385  """__str__(HarmonicWell self) -> std::string"""
6386  return _IMP_core.HarmonicWell___str__(self)
6387 
6388 
6389  def __repr__(self):
6390  """__repr__(HarmonicWell self) -> std::string"""
6391  return _IMP_core.HarmonicWell___repr__(self)
6392 
6393 
6394  @staticmethod
6395  def get_from(o):
6396  return _object_cast_to_HarmonicWell(o)
6397 
6398 HarmonicWell_swigregister = _IMP_core.HarmonicWell_swigregister
6399 HarmonicWell_swigregister(HarmonicWell)
6400 
6401 class HarmonicLowerBound(Harmonic):
6402  """Proxy of C++ IMP::core::HarmonicLowerBound class."""
6403 
6404  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
6405 
6406  def __init__(self, mean, k):
6407  """__init__(IMP::core::HarmonicLowerBound self, IMP::Float mean, IMP::Float k) -> HarmonicLowerBound"""
6408  this = _IMP_core.new_HarmonicLowerBound(mean, k)
6409  try:
6410  self.this.append(this)
6411  except __builtin__.Exception:
6412  self.this = this
6413 
6414  def __str__(self):
6415  """__str__(HarmonicLowerBound self) -> std::string"""
6416  return _IMP_core.HarmonicLowerBound___str__(self)
6417 
6418 
6419  def __repr__(self):
6420  """__repr__(HarmonicLowerBound self) -> std::string"""
6421  return _IMP_core.HarmonicLowerBound___repr__(self)
6422 
6423 
6424  @staticmethod
6425  def get_from(o):
6426  return _object_cast_to_HarmonicLowerBound(o)
6427 
6428 HarmonicLowerBound_swigregister = _IMP_core.HarmonicLowerBound_swigregister
6429 HarmonicLowerBound_swigregister(HarmonicLowerBound)
6430 
6431 class HarmonicUpperBound(Harmonic):
6432  """Proxy of C++ IMP::core::HarmonicUpperBound class."""
6433 
6434  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
6435 
6436  def __init__(self, mean, k):
6437  """__init__(IMP::core::HarmonicUpperBound self, IMP::Float mean, IMP::Float k) -> HarmonicUpperBound"""
6438  this = _IMP_core.new_HarmonicUpperBound(mean, k)
6439  try:
6440  self.this.append(this)
6441  except __builtin__.Exception:
6442  self.this = this
6443 
6444  def __str__(self):
6445  """__str__(HarmonicUpperBound self) -> std::string"""
6446  return _IMP_core.HarmonicUpperBound___str__(self)
6447 
6448 
6449  def __repr__(self):
6450  """__repr__(HarmonicUpperBound self) -> std::string"""
6451  return _IMP_core.HarmonicUpperBound___repr__(self)
6452 
6453 
6454  @staticmethod
6455  def get_from(o):
6456  return _object_cast_to_HarmonicUpperBound(o)
6457 
6458 HarmonicUpperBound_swigregister = _IMP_core.HarmonicUpperBound_swigregister
6459 HarmonicUpperBound_swigregister(HarmonicUpperBound)
6460 
6461 class WeightedSum(IMP.UnaryFunction):
6462  """Proxy of C++ IMP::core::WeightedSum class."""
6463 
6464  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
6465 
6466  def __init__(self, funcs, weights):
6467  """__init__(IMP::core::WeightedSum self, IMP::UnaryFunctions funcs, IMP::Floats weights) -> WeightedSum"""
6468  this = _IMP_core.new_WeightedSum(funcs, weights)
6469  try:
6470  self.this.append(this)
6471  except __builtin__.Exception:
6472  self.this = this
6473 
6474  def get_function_number(self):
6475  """get_function_number(WeightedSum self) -> unsigned int"""
6476  return _IMP_core.WeightedSum_get_function_number(self)
6477 
6478 
6479  def set_weights(self, weights):
6480  """set_weights(WeightedSum self, IMP::Floats weights)"""
6481  return _IMP_core.WeightedSum_set_weights(self, weights)
6482 
6483 
6484  def get_weights(self):
6485  """get_weights(WeightedSum self) -> IMP::Floats"""
6486  return _IMP_core.WeightedSum_get_weights(self)
6487 
6488 
6489  def get_weight(self, i):
6490  """get_weight(WeightedSum self, unsigned int i) -> double"""
6491  return _IMP_core.WeightedSum_get_weight(self, i)
6492 
6493 
6494  def get_function(self, i):
6495  """get_function(WeightedSum self, unsigned int i) -> UnaryFunction"""
6496  return _IMP_core.WeightedSum_get_function(self, i)
6497 
6498 
6499  def get_version_info(self):
6500  """get_version_info(WeightedSum self) -> VersionInfo"""
6501  return _IMP_core.WeightedSum_get_version_info(self)
6502 
6503 
6504  def __str__(self):
6505  """__str__(WeightedSum self) -> std::string"""
6506  return _IMP_core.WeightedSum___str__(self)
6507 
6508 
6509  def __repr__(self):
6510  """__repr__(WeightedSum self) -> std::string"""
6511  return _IMP_core.WeightedSum___repr__(self)
6512 
6513 
6514  @staticmethod
6515  def get_from(o):
6516  return _object_cast_to_WeightedSum(o)
6517 
6518 WeightedSum_swigregister = _IMP_core.WeightedSum_swigregister
6519 WeightedSum_swigregister(WeightedSum)
6520 
6521 class WeightedSumOfExponential(IMP.UnaryFunction):
6522  """Proxy of C++ IMP::core::WeightedSumOfExponential class."""
6523 
6524  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
6525 
6526  def __init__(self, funcs, weights, denom=1.0):
6527  """
6528  __init__(IMP::core::WeightedSumOfExponential self, IMP::UnaryFunctions funcs, IMP::Floats weights, IMP::Float denom=1.0) -> WeightedSumOfExponential
6529  __init__(IMP::core::WeightedSumOfExponential self, IMP::UnaryFunctions funcs, IMP::Floats weights) -> WeightedSumOfExponential
6530  """
6531  this = _IMP_core.new_WeightedSumOfExponential(funcs, weights, denom)
6532  try:
6533  self.this.append(this)
6534  except __builtin__.Exception:
6535  self.this = this
6536 
6537  def get_function_number(self):
6538  """get_function_number(WeightedSumOfExponential self) -> unsigned int"""
6539  return _IMP_core.WeightedSumOfExponential_get_function_number(self)
6540 
6541 
6542  def set_weights(self, weights):
6543  """set_weights(WeightedSumOfExponential self, IMP::Floats weights)"""
6544  return _IMP_core.WeightedSumOfExponential_set_weights(self, weights)
6545 
6546 
6547  def get_weights(self):
6548  """get_weights(WeightedSumOfExponential self) -> IMP::Floats"""
6549  return _IMP_core.WeightedSumOfExponential_get_weights(self)
6550 
6551 
6552  def get_weight(self, i):
6553  """get_weight(WeightedSumOfExponential self, unsigned int i) -> double"""
6554  return _IMP_core.WeightedSumOfExponential_get_weight(self, i)
6555 
6556 
6557  def get_function(self, i):
6558  """get_function(WeightedSumOfExponential self, unsigned int i) -> UnaryFunction"""
6559  return _IMP_core.WeightedSumOfExponential_get_function(self, i)
6560 
6561 
6562  def set_denominator(self, denom):
6563  """set_denominator(WeightedSumOfExponential self, double denom)"""
6564  return _IMP_core.WeightedSumOfExponential_set_denominator(self, denom)
6565 
6566 
6567  def get_denominator(self):
6568  """get_denominator(WeightedSumOfExponential self) -> double"""
6569  return _IMP_core.WeightedSumOfExponential_get_denominator(self)
6570 
6571 
6572  def get_version_info(self):
6573  """get_version_info(WeightedSumOfExponential self) -> VersionInfo"""
6574  return _IMP_core.WeightedSumOfExponential_get_version_info(self)
6575 
6576 
6577  def __str__(self):
6578  """__str__(WeightedSumOfExponential self) -> std::string"""
6579  return _IMP_core.WeightedSumOfExponential___str__(self)
6580 
6581 
6582  def __repr__(self):
6583  """__repr__(WeightedSumOfExponential self) -> std::string"""
6584  return _IMP_core.WeightedSumOfExponential___repr__(self)
6585 
6586 
6587  @staticmethod
6588  def get_from(o):
6589  return _object_cast_to_WeightedSumOfExponential(o)
6590 
6591 WeightedSumOfExponential_swigregister = _IMP_core.WeightedSumOfExponential_swigregister
6592 WeightedSumOfExponential_swigregister(WeightedSumOfExponential)
6593 
6594 class MSConnectivityRestraint(IMP.Restraint):
6595  """Proxy of C++ IMP::core::MSConnectivityRestraint class."""
6596 
6597  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
6598 
6599  def __init__(self, m, ps, eps=0.1):
6600  """
6601  __init__(IMP::core::MSConnectivityRestraint self, Model m, PairScore ps, double eps=0.1) -> MSConnectivityRestraint
6602  __init__(IMP::core::MSConnectivityRestraint self, Model m, PairScore ps) -> MSConnectivityRestraint
6603  """
6604  this = _IMP_core.new_MSConnectivityRestraint(m, ps, eps)
6605  try:
6606  self.this.append(this)
6607  except __builtin__.Exception:
6608  self.this = this
6609 
6610  def add_type(self, ps):
6611  """add_type(MSConnectivityRestraint self, IMP::ParticlesTemp const & ps) -> unsigned int"""
6612  return _IMP_core.MSConnectivityRestraint_add_type(self, ps)
6613 
6614 
6615  def add_composite(self, *args):
6616  """
6617  add_composite(MSConnectivityRestraint self, IMP::Ints const & components) -> unsigned int
6618  add_composite(MSConnectivityRestraint self, IMP::Ints const & components, unsigned int parent) -> unsigned int
6619  """
6620  return _IMP_core.MSConnectivityRestraint_add_composite(self, *args)
6621 
6622 
6623  def get_connected_pairs(self):
6624  """get_connected_pairs(MSConnectivityRestraint self) -> IMP::ParticlePairsTemp"""
6625  return _IMP_core.MSConnectivityRestraint_get_connected_pairs(self)
6626 
6627 
6628  def get_pair_score(self):
6629  """get_pair_score(MSConnectivityRestraint self) -> PairScore"""
6630  return _IMP_core.MSConnectivityRestraint_get_pair_score(self)
6631 
6632 
6633  def do_create_current_decomposition(self):
6634  """do_create_current_decomposition(MSConnectivityRestraint self) -> IMP::Restraints"""
6635  return _IMP_core.MSConnectivityRestraint_do_create_current_decomposition(self)
6636 
6637 
6638  def do_get_inputs(self):
6639  """do_get_inputs(MSConnectivityRestraint self) -> IMP::ModelObjectsTemp"""
6640  return _IMP_core.MSConnectivityRestraint_do_get_inputs(self)
6641 
6642 
6643  def get_version_info(self):
6644  """get_version_info(MSConnectivityRestraint self) -> VersionInfo"""
6645  return _IMP_core.MSConnectivityRestraint_get_version_info(self)
6646 
6647 
6648  def __str__(self):
6649  """__str__(MSConnectivityRestraint self) -> std::string"""
6650  return _IMP_core.MSConnectivityRestraint___str__(self)
6651 
6652 
6653  def __repr__(self):
6654  """__repr__(MSConnectivityRestraint self) -> std::string"""
6655  return _IMP_core.MSConnectivityRestraint___repr__(self)
6656 
6657 
6658  @staticmethod
6659  def get_from(o):
6660  return _object_cast_to_MSConnectivityRestraint(o)
6661 
6662 MSConnectivityRestraint_swigregister = _IMP_core.MSConnectivityRestraint_swigregister
6663 MSConnectivityRestraint_swigregister(MSConnectivityRestraint)
6664 
6665 class HierarchyTraits(object):
6666  """Proxy of C++ IMP::core::HierarchyTraits class."""
6667 
6668  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
6669 
6670  def __init__(self, *args):
6671  """
6672  __init__(IMP::core::HierarchyTraits self) -> HierarchyTraits
6673  __init__(IMP::core::HierarchyTraits self, std::string name) -> HierarchyTraits
6674  """
6675  this = _IMP_core.new_HierarchyTraits(*args)
6676  try:
6677  self.this.append(this)
6678  except __builtin__.Exception:
6679  self.this = this
6680 
6681  def get_children_key(self):
6682  """get_children_key(HierarchyTraits self) -> ParticleIndexesKey"""
6683  return _IMP_core.HierarchyTraits_get_children_key(self)
6684 
6685 
6686  def get_parent_key(self):
6687  """get_parent_key(HierarchyTraits self) -> ParticleIndexKey"""
6688  return _IMP_core.HierarchyTraits_get_parent_key(self)
6689 
6690 
6691  def __eq__(self, o):
6692  """__eq__(HierarchyTraits self, HierarchyTraits o) -> bool"""
6693  return _IMP_core.HierarchyTraits___eq__(self, o)
6694 
6695 
6696  def show(self, *args):
6697  """
6698  show(HierarchyTraits self, _ostream out)
6699  show(HierarchyTraits self)
6700  """
6701  return _IMP_core.HierarchyTraits_show(self, *args)
6702 
6703 
6704  def __str__(self):
6705  """__str__(HierarchyTraits self) -> std::string"""
6706  return _IMP_core.HierarchyTraits___str__(self)
6707 
6708 
6709  def __repr__(self):
6710  """__repr__(HierarchyTraits self) -> std::string"""
6711  return _IMP_core.HierarchyTraits___repr__(self)
6712 
6713  __swig_destroy__ = _IMP_core.delete_HierarchyTraits
6714  __del__ = lambda self: None
6715 HierarchyTraits_swigregister = _IMP_core.HierarchyTraits_swigregister
6716 HierarchyTraits_swigregister(HierarchyTraits)
6717 
6718 class Hierarchy(IMP.Decorator):
6719  """Proxy of C++ IMP::core::Hierarchy class."""
6720 
6721  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
6722 
6723  def get_decorator_traits(self):
6724  """get_decorator_traits(Hierarchy self) -> HierarchyTraits"""
6725  return _IMP_core.Hierarchy_get_decorator_traits(self)
6726 
6727 
6728  def get_default_decorator_traits():
6729  """get_default_decorator_traits() -> HierarchyTraits"""
6730  return _IMP_core.Hierarchy_get_default_decorator_traits()
6731 
6732  get_default_decorator_traits = staticmethod(get_default_decorator_traits)
6733 
6734  def __init__(self, *args):
6735  """
6736  __init__(IMP::core::Hierarchy self) -> Hierarchy
6737  __init__(IMP::core::Hierarchy self, Model m, ParticleIndex id, HierarchyTraits tr) -> Hierarchy
6738  __init__(IMP::core::Hierarchy self, Model m, ParticleIndex id) -> Hierarchy
6739  __init__(IMP::core::Hierarchy self, _ParticleAdaptor d, HierarchyTraits tr) -> Hierarchy
6740  __init__(IMP::core::Hierarchy self, _ParticleAdaptor d) -> Hierarchy
6741  """
6742  this = _IMP_core.new_Hierarchy(*args)
6743  try:
6744  self.this.append(this)
6745  except __builtin__.Exception:
6746  self.this = this
6747 
6748  def show(self, *args):
6749  """
6750  show(Hierarchy self, _ostream out)
6751  show(Hierarchy self)
6752  """
6753  return _IMP_core.Hierarchy_show(self, *args)
6754 
6755 
6756  def setup_particle(*args):
6757  """
6758  setup_particle(Model m, ParticleIndex pi, HierarchyTraits tr) -> Hierarchy
6759  setup_particle(Model m, ParticleIndex pi) -> Hierarchy
6760  setup_particle(_ParticleAdaptor d, HierarchyTraits tr) -> Hierarchy
6761  setup_particle(_ParticleAdaptor d) -> Hierarchy
6762  setup_particle(Model m, ParticleIndex pi, IMP::ParticleIndexes children, HierarchyTraits tr) -> Hierarchy
6763  setup_particle(Model m, ParticleIndex pi, IMP::ParticleIndexes children) -> Hierarchy
6764  setup_particle(_ParticleAdaptor d, IMP::ParticleIndexes children, HierarchyTraits tr) -> Hierarchy
6765  setup_particle(_ParticleAdaptor d, IMP::ParticleIndexes children) -> Hierarchy
6766  setup_particle(Model m, ParticleIndex pi, IMP::ParticlesTemp children, HierarchyTraits tr) -> Hierarchy
6767  setup_particle(Model m, ParticleIndex pi, IMP::ParticlesTemp children) -> Hierarchy
6768  setup_particle(_ParticleAdaptor d, IMP::ParticlesTemp children, HierarchyTraits tr) -> Hierarchy
6769  setup_particle(_ParticleAdaptor d, IMP::ParticlesTemp children) -> Hierarchy
6770  """
6771  return _IMP_core.Hierarchy_setup_particle(*args)
6772 
6773  setup_particle = staticmethod(setup_particle)
6774 
6775  def get_is_setup(*args):
6776  """
6777  get_is_setup(_ParticleAdaptor p, HierarchyTraits tr) -> bool
6778  get_is_setup(_ParticleAdaptor p) -> bool
6779  get_is_setup(Model arg1, ParticleIndex arg2, HierarchyTraits arg3) -> bool
6780  get_is_setup(Model arg1, ParticleIndex arg2) -> bool
6781  """
6782  return _IMP_core.Hierarchy_get_is_setup(*args)
6783 
6784  get_is_setup = staticmethod(get_is_setup)
6785 
6786  def get_parent(self):
6787  """get_parent(Hierarchy self) -> Hierarchy"""
6788  return _IMP_core.Hierarchy_get_parent(self)
6789 
6790 
6791  def get_number_of_children(self):
6792  """get_number_of_children(Hierarchy self) -> unsigned int"""
6793  return _IMP_core.Hierarchy_get_number_of_children(self)
6794 
6795 
6796  def get_child(self, i):
6797  """get_child(Hierarchy self, unsigned int i) -> Hierarchy"""
6798  return _IMP_core.Hierarchy_get_child(self, i)
6799 
6800 
6801  def get_children_indexes(self):
6802  """get_children_indexes(Hierarchy self) -> IMP::ParticleIndexes"""
6803  return _IMP_core.Hierarchy_get_children_indexes(self)
6804 
6805 
6806  def get_children(self):
6807  """get_children(Hierarchy self) -> IMP::core::GenericHierarchies"""
6808  return _IMP_core.Hierarchy_get_children(self)
6809 
6810 
6811  def remove_child(self, *args):
6812  """
6813  remove_child(Hierarchy self, unsigned int i)
6814  remove_child(Hierarchy self, Hierarchy h)
6815  """
6816  return _IMP_core.Hierarchy_remove_child(self, *args)
6817 
6818 
6819  def clear_children(self):
6820  """clear_children(Hierarchy self)"""
6821  return _IMP_core.Hierarchy_clear_children(self)
6822 
6823 
6824  def add_child(self, h):
6825  """add_child(Hierarchy self, Hierarchy h)"""
6826  return _IMP_core.Hierarchy_add_child(self, h)
6827 
6828 
6829  def add_child_at(self, h, pos):
6830  """add_child_at(Hierarchy self, Hierarchy h, unsigned int pos)"""
6831  return _IMP_core.Hierarchy_add_child_at(self, h, pos)
6832 
6833 
6834  def get_child_index(self, *args):
6835  """
6836  get_child_index(Hierarchy self, unsigned int i) -> ParticleIndex
6837  get_child_index(Hierarchy self) -> int
6838  """
6839  return _IMP_core.Hierarchy_get_child_index(self, *args)
6840 
6841 
6842  def get_default_traits():
6843  """get_default_traits() -> HierarchyTraits"""
6844  return _IMP_core.Hierarchy_get_default_traits()
6845 
6846  get_default_traits = staticmethod(get_default_traits)
6847 
6848  def get_traits(self):
6849  """get_traits(Hierarchy self) -> HierarchyTraits"""
6850  return _IMP_core.Hierarchy_get_traits(self)
6851 
6852 
6853  def add_attribute(self, *args):
6854  """
6855  add_attribute(Hierarchy self, FloatKey k, IMP::Float v, bool opt)
6856  add_attribute(Hierarchy self, FloatKey a0, IMP::Float a1)
6857  add_attribute(Hierarchy self, IntKey a0, IMP::Int a1)
6858  add_attribute(Hierarchy self, StringKey a0, IMP::String a1)
6859  add_attribute(Hierarchy self, ParticleIndexKey a0, Particle a1)
6860  add_attribute(Hierarchy self, ObjectKey a0, Object a1)
6861  """
6862  return _IMP_core.Hierarchy_add_attribute(self, *args)
6863 
6864 
6865  def get_value(self, *args):
6866  """
6867  get_value(Hierarchy self, FloatKey a0) -> IMP::Float
6868  get_value(Hierarchy self, IntKey a0) -> IMP::Int
6869  get_value(Hierarchy self, StringKey a0) -> IMP::String
6870  get_value(Hierarchy self, ParticleIndexKey a0) -> Particle
6871  get_value(Hierarchy self, ObjectKey a0) -> Object
6872  """
6873  return _IMP_core.Hierarchy_get_value(self, *args)
6874 
6875 
6876  def set_value(self, *args):
6877  """
6878  set_value(Hierarchy self, FloatKey a0, IMP::Float a1)
6879  set_value(Hierarchy self, IntKey a0, IMP::Int a1)
6880  set_value(Hierarchy self, StringKey a0, IMP::String a1)
6881  set_value(Hierarchy self, ParticleIndexKey a0, Particle a1)
6882  set_value(Hierarchy self, ObjectKey a0, Object a1)
6883  """
6884  return _IMP_core.Hierarchy_set_value(self, *args)
6885 
6886 
6887  def remove_attribute(self, *args):
6888  """
6889  remove_attribute(Hierarchy self, FloatKey a0)
6890  remove_attribute(Hierarchy self, IntKey a0)
6891  remove_attribute(Hierarchy self, StringKey a0)
6892  remove_attribute(Hierarchy self, ParticleIndexKey a0)
6893  remove_attribute(Hierarchy self, ObjectKey a0)
6894  """
6895  return _IMP_core.Hierarchy_remove_attribute(self, *args)
6896 
6897 
6898  def has_attribute(self, *args):
6899  """
6900  has_attribute(Hierarchy self, FloatKey a0) -> bool
6901  has_attribute(Hierarchy self, IntKey a0) -> bool
6902  has_attribute(Hierarchy self, StringKey a0) -> bool
6903  has_attribute(Hierarchy self, ParticleIndexKey a0) -> bool
6904  has_attribute(Hierarchy self, ObjectKey a0) -> bool
6905  """
6906  return _IMP_core.Hierarchy_has_attribute(self, *args)
6907 
6908 
6909  def get_derivative(self, a0):
6910  """get_derivative(Hierarchy self, FloatKey a0) -> double"""
6911  return _IMP_core.Hierarchy_get_derivative(self, a0)
6912 
6913 
6914  def get_name(self):
6915  """get_name(Hierarchy self) -> std::string"""
6916  return _IMP_core.Hierarchy_get_name(self)
6917 
6918 
6919  def clear_caches(self):
6920  """clear_caches(Hierarchy self)"""
6921  return _IMP_core.Hierarchy_clear_caches(self)
6922 
6923 
6924  def set_name(self, a0):
6925  """set_name(Hierarchy self, std::string a0)"""
6926  return _IMP_core.Hierarchy_set_name(self, a0)
6927 
6928 
6929  def set_check_level(self, a0):
6930  """set_check_level(Hierarchy self, IMP::CheckLevel a0)"""
6931  return _IMP_core.Hierarchy_set_check_level(self, a0)
6932 
6933 
6934  def add_to_derivative(self, a0, a1, a2):
6935  """add_to_derivative(Hierarchy self, FloatKey a0, double a1, DerivativeAccumulator a2)"""
6936  return _IMP_core.Hierarchy_add_to_derivative(self, a0, a1, a2)
6937 
6938 
6939  def set_is_optimized(self, a0, a1):
6940  """set_is_optimized(Hierarchy self, FloatKey a0, bool a1)"""
6941  return _IMP_core.Hierarchy_set_is_optimized(self, a0, a1)
6942 
6943 
6944  def get_is_optimized(self, a0):
6945  """get_is_optimized(Hierarchy self, FloatKey a0) -> bool"""
6946  return _IMP_core.Hierarchy_get_is_optimized(self, a0)
6947 
6948 
6949  def get_check_level(self):
6950  """get_check_level(Hierarchy self) -> IMP::CheckLevel"""
6951  return _IMP_core.Hierarchy_get_check_level(self)
6952 
6953 
6954  def __eq__(self, *args):
6955  """
6956  __eq__(Hierarchy self, Hierarchy o) -> bool
6957  __eq__(Hierarchy self, Particle d) -> bool
6958  """
6959  return _IMP_core.Hierarchy___eq__(self, *args)
6960 
6961 
6962  def __ne__(self, *args):
6963  """
6964  __ne__(Hierarchy self, Hierarchy o) -> bool
6965  __ne__(Hierarchy self, Particle d) -> bool
6966  """
6967  return _IMP_core.Hierarchy___ne__(self, *args)
6968 
6969 
6970  def __le__(self, *args):
6971  """
6972  __le__(Hierarchy self, Hierarchy o) -> bool
6973  __le__(Hierarchy self, Particle d) -> bool
6974  """
6975  return _IMP_core.Hierarchy___le__(self, *args)
6976 
6977 
6978  def __lt__(self, *args):
6979  """
6980  __lt__(Hierarchy self, Hierarchy o) -> bool
6981  __lt__(Hierarchy self, Particle d) -> bool
6982  """
6983  return _IMP_core.Hierarchy___lt__(self, *args)
6984 
6985 
6986  def __ge__(self, *args):
6987  """
6988  __ge__(Hierarchy self, Hierarchy o) -> bool
6989  __ge__(Hierarchy self, Particle d) -> bool
6990  """
6991  return _IMP_core.Hierarchy___ge__(self, *args)
6992 
6993 
6994  def __gt__(self, *args):
6995  """
6996  __gt__(Hierarchy self, Hierarchy o) -> bool
6997  __gt__(Hierarchy self, Particle d) -> bool
6998  """
6999  return _IMP_core.Hierarchy___gt__(self, *args)
7000 
7001 
7002  def __hash__(self):
7003  """__hash__(Hierarchy self) -> std::size_t"""
7004  return _IMP_core.Hierarchy___hash__(self)
7005 
7006 
7007  def __str__(self):
7008  """__str__(Hierarchy self) -> std::string"""
7009  return _IMP_core.Hierarchy___str__(self)
7010 
7011 
7012  def __repr__(self):
7013  """__repr__(Hierarchy self) -> std::string"""
7014  return _IMP_core.Hierarchy___repr__(self)
7015 
7016  __swig_destroy__ = _IMP_core.delete_Hierarchy
7017  __del__ = lambda self: None
7018 Hierarchy_swigregister = _IMP_core.Hierarchy_swigregister
7019 Hierarchy_swigregister(Hierarchy)
7020 
7021 def Hierarchy_get_default_decorator_traits():
7022  """Hierarchy_get_default_decorator_traits() -> HierarchyTraits"""
7023  return _IMP_core.Hierarchy_get_default_decorator_traits()
7024 
7025 def Hierarchy_setup_particle(*args):
7026  """
7027  setup_particle(Model m, ParticleIndex pi, HierarchyTraits tr) -> Hierarchy
7028  setup_particle(Model m, ParticleIndex pi) -> Hierarchy
7029  setup_particle(_ParticleAdaptor d, HierarchyTraits tr) -> Hierarchy
7030  setup_particle(_ParticleAdaptor d) -> Hierarchy
7031  setup_particle(Model m, ParticleIndex pi, IMP::ParticleIndexes children, HierarchyTraits tr) -> Hierarchy
7032  setup_particle(Model m, ParticleIndex pi, IMP::ParticleIndexes children) -> Hierarchy
7033  setup_particle(_ParticleAdaptor d, IMP::ParticleIndexes children, HierarchyTraits tr) -> Hierarchy
7034  setup_particle(_ParticleAdaptor d, IMP::ParticleIndexes children) -> Hierarchy
7035  setup_particle(Model m, ParticleIndex pi, IMP::ParticlesTemp children, HierarchyTraits tr) -> Hierarchy
7036  setup_particle(Model m, ParticleIndex pi, IMP::ParticlesTemp children) -> Hierarchy
7037  setup_particle(_ParticleAdaptor d, IMP::ParticlesTemp children, HierarchyTraits tr) -> Hierarchy
7038  Hierarchy_setup_particle(_ParticleAdaptor d, IMP::ParticlesTemp children) -> Hierarchy
7039  """
7040  return _IMP_core.Hierarchy_setup_particle(*args)
7041 
7042 def Hierarchy_get_is_setup(*args):
7043  """
7044  get_is_setup(_ParticleAdaptor p, HierarchyTraits tr) -> bool
7045  get_is_setup(_ParticleAdaptor p) -> bool
7046  get_is_setup(Model arg1, ParticleIndex arg2, HierarchyTraits arg3) -> bool
7047  Hierarchy_get_is_setup(Model arg2, ParticleIndex arg3) -> bool
7048  """
7049  return _IMP_core.Hierarchy_get_is_setup(*args)
7050 
7051 def Hierarchy_get_default_traits():
7052  """Hierarchy_get_default_traits() -> HierarchyTraits"""
7053  return _IMP_core.Hierarchy_get_default_traits()
7054 
7055 class HierarchyVisitor(object):
7056  """Proxy of C++ IMP::core::HierarchyVisitor class."""
7057 
7058  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
7059  __repr__ = _swig_repr
7060 
7061  def __init__(self):
7062  """__init__(IMP::core::HierarchyVisitor self) -> HierarchyVisitor"""
7063  if self.__class__ == HierarchyVisitor:
7064  _self = None
7065  else:
7066  _self = self
7067  this = _IMP_core.new_HierarchyVisitor(_self, )
7068  try:
7069  self.this.append(this)
7070  except __builtin__.Exception:
7071  self.this = this
7072 
7073  if self.__class__ != HierarchyVisitor:
7074  _director_objects.register(self)
7075 
7076 
7077 
7078 
7079  def __call__(self, p):
7080  """__call__(HierarchyVisitor self, Hierarchy p) -> bool"""
7081  return _IMP_core.HierarchyVisitor___call__(self, p)
7082 
7083  __swig_destroy__ = _IMP_core.delete_HierarchyVisitor
7084  __del__ = lambda self: None
7085  def __disown__(self):
7086  self.this.disown()
7087  _IMP_core.disown_HierarchyVisitor(self)
7088  return weakref_proxy(self)
7089 HierarchyVisitor_swigregister = _IMP_core.HierarchyVisitor_swigregister
7090 HierarchyVisitor_swigregister(HierarchyVisitor)
7091 
7092 class ModifierVisitor(HierarchyVisitor):
7093  """Proxy of C++ IMP::core::ModifierVisitor class."""
7094 
7095  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
7096  __repr__ = _swig_repr
7097 
7098  def __init__(self, sm):
7099  """__init__(IMP::core::ModifierVisitor self, SingletonModifier sm) -> ModifierVisitor"""
7100  this = _IMP_core.new_ModifierVisitor(sm)
7101  try:
7102  self.this.append(this)
7103  except __builtin__.Exception:
7104  self.this = this
7105  __swig_destroy__ = _IMP_core.delete_ModifierVisitor
7106  __del__ = lambda self: None
7107 ModifierVisitor_swigregister = _IMP_core.ModifierVisitor_swigregister
7108 ModifierVisitor_swigregister(ModifierVisitor)
7109 
7110 class HierarchyCounter(HierarchyVisitor):
7111  """Proxy of C++ IMP::core::HierarchyCounter class."""
7112 
7113  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
7114 
7115  def __init__(self):
7116  """__init__(IMP::core::HierarchyCounter self) -> HierarchyCounter"""
7117  this = _IMP_core.new_HierarchyCounter()
7118  try:
7119  self.this.append(this)
7120  except __builtin__.Exception:
7121  self.this = this
7122 
7123  def get_count(self):
7124  """get_count(HierarchyCounter self) -> unsigned int"""
7125  return _IMP_core.HierarchyCounter_get_count(self)
7126 
7127 
7128  def show(self, *args):
7129  """
7130  show(HierarchyCounter self, _ostream out)
7131  show(HierarchyCounter self)
7132  """
7133  return _IMP_core.HierarchyCounter_show(self, *args)
7134 
7135 
7136  def __str__(self):
7137  """__str__(HierarchyCounter self) -> std::string"""
7138  return _IMP_core.HierarchyCounter___str__(self)
7139 
7140 
7141  def __repr__(self):
7142  """__repr__(HierarchyCounter self) -> std::string"""
7143  return _IMP_core.HierarchyCounter___repr__(self)
7144 
7145  __swig_destroy__ = _IMP_core.delete_HierarchyCounter
7146  __del__ = lambda self: None
7147 HierarchyCounter_swigregister = _IMP_core.HierarchyCounter_swigregister
7148 HierarchyCounter_swigregister(HierarchyCounter)
7149 
7150 
7151 def get_leaves(mhd):
7152  """get_leaves(Hierarchy mhd) -> IMP::core::GenericHierarchies"""
7153  return _IMP_core.get_leaves(mhd)
7154 
7155 def get_internal(mhd):
7156  """get_internal(Hierarchy mhd) -> IMP::core::GenericHierarchies"""
7157  return _IMP_core.get_internal(mhd)
7158 
7159 def get_all_descendants(mhd):
7160  """get_all_descendants(Hierarchy mhd) -> IMP::core::GenericHierarchies"""
7161  return _IMP_core.get_all_descendants(mhd)
7162 
7163 def get_root(h):
7164  """get_root(Hierarchy h) -> Hierarchy"""
7165  return _IMP_core.get_root(h)
7166 
7167 def visit_breadth_first(d, f):
7168  """visit_breadth_first(Hierarchy d, HierarchyVisitor f)"""
7169  return _IMP_core.visit_breadth_first(d, f)
7170 
7171 def visit_depth_first(d, f):
7172  """visit_depth_first(Hierarchy d, HierarchyVisitor f)"""
7173  return _IMP_core.visit_depth_first(d, f)
7174 class LeavesRefiner(IMP.Refiner):
7175  """Proxy of C++ IMP::core::LeavesRefiner class."""
7176 
7177  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
7178 
7179  def __init__(self, tr):
7180  """__init__(IMP::core::LeavesRefiner self, HierarchyTraits tr) -> LeavesRefiner"""
7181  this = _IMP_core.new_LeavesRefiner(tr)
7182  try:
7183  self.this.append(this)
7184  except __builtin__.Exception:
7185  self.this = this
7186 
7187  def do_get_inputs(self, m, pis):
7188  """do_get_inputs(LeavesRefiner self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
7189  return _IMP_core.LeavesRefiner_do_get_inputs(self, m, pis)
7190 
7191 
7192  def get_version_info(self):
7193  """get_version_info(LeavesRefiner self) -> VersionInfo"""
7194  return _IMP_core.LeavesRefiner_get_version_info(self)
7195 
7196 
7197  def __str__(self):
7198  """__str__(LeavesRefiner self) -> std::string"""
7199  return _IMP_core.LeavesRefiner___str__(self)
7200 
7201 
7202  def __repr__(self):
7203  """__repr__(LeavesRefiner self) -> std::string"""
7204  return _IMP_core.LeavesRefiner___repr__(self)
7205 
7206 
7207  @staticmethod
7208  def get_from(o):
7209  return _object_cast_to_LeavesRefiner(o)
7210 
7211 LeavesRefiner_swigregister = _IMP_core.LeavesRefiner_swigregister
7212 LeavesRefiner_swigregister(LeavesRefiner)
7213 
7214 class Linear(IMP.UnaryFunction):
7215  """Proxy of C++ IMP::core::Linear class."""
7216 
7217  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
7218 
7219  def __init__(self, offset, slope):
7220  """__init__(IMP::core::Linear self, double offset, double slope) -> Linear"""
7221  this = _IMP_core.new_Linear(offset, slope)
7222  try:
7223  self.this.append(this)
7224  except __builtin__.Exception:
7225  self.this = this
7226 
7227  def set_slope(self, f):
7228  """set_slope(Linear self, double f)"""
7229  return _IMP_core.Linear_set_slope(self, f)
7230 
7231 
7232  def set_offset(self, f):
7233  """set_offset(Linear self, double f)"""
7234  return _IMP_core.Linear_set_offset(self, f)
7235 
7236 
7237  def get_version_info(self):
7238  """get_version_info(Linear self) -> VersionInfo"""
7239  return _IMP_core.Linear_get_version_info(self)
7240 
7241 
7242  def __str__(self):
7243  """__str__(Linear self) -> std::string"""
7244  return _IMP_core.Linear___str__(self)
7245 
7246 
7247  def __repr__(self):
7248  """__repr__(Linear self) -> std::string"""
7249  return _IMP_core.Linear___repr__(self)
7250 
7251 
7252  @staticmethod
7253  def get_from(o):
7254  return _object_cast_to_Linear(o)
7255 
7256 Linear_swigregister = _IMP_core.Linear_swigregister
7257 Linear_swigregister(Linear)
7258 
7259 class LogNormalMover(MonteCarloMover):
7260  """Proxy of C++ IMP::core::LogNormalMover class."""
7261 
7262  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
7263 
7264  def __init__(self, *args):
7265  """
7266  __init__(IMP::core::LogNormalMover self, Model m, ParticleIndex pi, IMP::FloatKeys const & vars, double stddev) -> LogNormalMover
7267  __init__(IMP::core::LogNormalMover self, Model m, ParticleIndex pi, double stddev) -> LogNormalMover
7268  __init__(IMP::core::LogNormalMover self, IMP::ParticlesTemp const & sc, IMP::FloatKeys const & vars, IMP::Float sigma) -> LogNormalMover
7269  __init__(IMP::core::LogNormalMover self, IMP::ParticlesTemp const & sc, IMP::Float radius) -> LogNormalMover
7270  """
7271  this = _IMP_core.new_LogNormalMover(*args)
7272  try:
7273  self.this.append(this)
7274  except __builtin__.Exception:
7275  self.this = this
7276 
7277  def set_sigma(self, sigma):
7278  """set_sigma(LogNormalMover self, IMP::Float sigma)"""
7279  return _IMP_core.LogNormalMover_set_sigma(self, sigma)
7280 
7281 
7282  def get_sigma(self):
7283  """get_sigma(LogNormalMover self) -> IMP::Float"""
7284  return _IMP_core.LogNormalMover_get_sigma(self)
7285 
7286 
7287  def get_version_info(self):
7288  """get_version_info(LogNormalMover self) -> VersionInfo"""
7289  return _IMP_core.LogNormalMover_get_version_info(self)
7290 
7291 
7292  def __str__(self):
7293  """__str__(LogNormalMover self) -> std::string"""
7294  return _IMP_core.LogNormalMover___str__(self)
7295 
7296 
7297  def __repr__(self):
7298  """__repr__(LogNormalMover self) -> std::string"""
7299  return _IMP_core.LogNormalMover___repr__(self)
7300 
7301 
7302  @staticmethod
7303  def get_from(o):
7304  return _object_cast_to_LogNormalMover(o)
7305 
7306 LogNormalMover_swigregister = _IMP_core.LogNormalMover_swigregister
7307 LogNormalMover_swigregister(LogNormalMover)
7308 
7309 class IncrementalScoringFunction(IMP.ScoringFunction):
7310  """Proxy of C++ IMP::core::IncrementalScoringFunction class."""
7311 
7312  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
7313 
7314  def __init__(self, *args):
7315  """
7316  __init__(IMP::core::IncrementalScoringFunction self, Model m, IMP::ParticleIndexes const & to_move, IMP::RestraintsTemp const & rs, double weight=1.0, double max, std::string name) -> IncrementalScoringFunction
7317  __init__(IMP::core::IncrementalScoringFunction self, Model m, IMP::ParticleIndexes const & to_move, IMP::RestraintsTemp const & rs, double weight=1.0, double max) -> IncrementalScoringFunction
7318  __init__(IMP::core::IncrementalScoringFunction self, Model m, IMP::ParticleIndexes const & to_move, IMP::RestraintsTemp const & rs, double weight=1.0) -> IncrementalScoringFunction
7319  __init__(IMP::core::IncrementalScoringFunction self, Model m, IMP::ParticleIndexes const & to_move, IMP::RestraintsTemp const & rs) -> IncrementalScoringFunction
7320  """
7321  this = _IMP_core.new_IncrementalScoringFunction(*args)
7322  try:
7323  self.this.append(this)
7324  except __builtin__.Exception:
7325  self.this = this
7326 
7327  def reset_moved_particles(self):
7328  """reset_moved_particles(IncrementalScoringFunction self)"""
7329  return _IMP_core.IncrementalScoringFunction_reset_moved_particles(self)
7330 
7331 
7332  def set_moved_particles(self, p):
7333  """set_moved_particles(IncrementalScoringFunction self, IMP::ParticleIndexes const & p)"""
7334  return _IMP_core.IncrementalScoringFunction_set_moved_particles(self, p)
7335 
7336 
7337  def add_close_pair_score(self, *args):
7338  """
7339  add_close_pair_score(IncrementalScoringFunction self, PairScore ps, double distance, IMP::ParticlesTemp const & particles, IMP::PairPredicates const & filters)
7340  add_close_pair_score(IncrementalScoringFunction self, PairScore ps, double distance, IMP::ParticlesTemp const & particles)
7341  """
7342  return _IMP_core.IncrementalScoringFunction_add_close_pair_score(self, *args)
7343 
7344 
7345  def clear_close_pair_scores(self):
7346  """clear_close_pair_scores(IncrementalScoringFunction self)"""
7347  return _IMP_core.IncrementalScoringFunction_clear_close_pair_scores(self)
7348 
7349 
7350  def get_movable_indexes(self):
7351  """get_movable_indexes(IncrementalScoringFunction self) -> IMP::ParticleIndexes"""
7352  return _IMP_core.IncrementalScoringFunction_get_movable_indexes(self)
7353 
7354 
7355  def do_add_score_and_derivatives(self, sa, ss):
7356  """do_add_score_and_derivatives(IncrementalScoringFunction self, ScoreAccumulator sa, IMP::ScoreStatesTemp const & ss)"""
7357  return _IMP_core.IncrementalScoringFunction_do_add_score_and_derivatives(self, sa, ss)
7358 
7359 
7360  def do_get_inputs(self):
7361  """do_get_inputs(IncrementalScoringFunction self) -> IMP::ModelObjectsTemp"""
7362  return _IMP_core.IncrementalScoringFunction_do_get_inputs(self)
7363 
7364 
7365  def handle_set_has_required_score_states(self, arg2):
7366  """handle_set_has_required_score_states(IncrementalScoringFunction self, bool arg2)"""
7367  return _IMP_core.IncrementalScoringFunction_handle_set_has_required_score_states(self, arg2)
7368 
7369 
7370  def get_version_info(self):
7371  """get_version_info(IncrementalScoringFunction self) -> VersionInfo"""
7372  return _IMP_core.IncrementalScoringFunction_get_version_info(self)
7373 
7374 
7375  def __str__(self):
7376  """__str__(IncrementalScoringFunction self) -> std::string"""
7377  return _IMP_core.IncrementalScoringFunction___str__(self)
7378 
7379 
7380  def __repr__(self):
7381  """__repr__(IncrementalScoringFunction self) -> std::string"""
7382  return _IMP_core.IncrementalScoringFunction___repr__(self)
7383 
7384 
7385  @staticmethod
7386  def get_from(o):
7387  return _object_cast_to_IncrementalScoringFunction(o)
7388 
7389 IncrementalScoringFunction_swigregister = _IMP_core.IncrementalScoringFunction_swigregister
7390 IncrementalScoringFunction_swigregister(IncrementalScoringFunction)
7391 
7392 IMP_CORE_HAS_MONTE_CARLO_MOVER = _IMP_core.IMP_CORE_HAS_MONTE_CARLO_MOVER
7393 class MonteCarlo(IMP.Optimizer):
7394  """Proxy of C++ IMP::core::MonteCarlo class."""
7395 
7396  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
7397 
7398  def __init__(self, m):
7399  """__init__(IMP::core::MonteCarlo self, Model m) -> MonteCarlo"""
7400  this = _IMP_core.new_MonteCarlo(m)
7401  try:
7402  self.this.append(this)
7403  except __builtin__.Exception:
7404  self.this = this
7405 
7406  def get_version_info(self):
7407  """get_version_info(MonteCarlo self) -> VersionInfo"""
7408  return _IMP_core.MonteCarlo_get_version_info(self)
7409 
7410 
7411  def set_return_best(self, tf):
7412  """set_return_best(MonteCarlo self, bool tf)"""
7413  return _IMP_core.MonteCarlo_set_return_best(self, tf)
7414 
7415 
7416  def set_kt(self, t):
7417  """set_kt(MonteCarlo self, IMP::Float t)"""
7418  return _IMP_core.MonteCarlo_set_kt(self, t)
7419 
7420 
7421  def get_kt(self):
7422  """get_kt(MonteCarlo self) -> IMP::Float"""
7423  return _IMP_core.MonteCarlo_get_kt(self)
7424 
7425 
7426  def get_last_accepted_energy(self):
7427  """get_last_accepted_energy(MonteCarlo self) -> double"""
7428  return _IMP_core.MonteCarlo_get_last_accepted_energy(self)
7429 
7430 
7431  def get_best_accepted_energy(self):
7432  """get_best_accepted_energy(MonteCarlo self) -> double"""
7433  return _IMP_core.MonteCarlo_get_best_accepted_energy(self)
7434 
7435 
7436  def get_number_of_downward_steps(self):
7437  """get_number_of_downward_steps(MonteCarlo self) -> unsigned int"""
7438  return _IMP_core.MonteCarlo_get_number_of_downward_steps(self)
7439 
7440 
7441  def get_number_of_upward_steps(self):
7442  """get_number_of_upward_steps(MonteCarlo self) -> unsigned int"""
7443  return _IMP_core.MonteCarlo_get_number_of_upward_steps(self)
7444 
7445 
7446  def get_number_of_proposed_steps(self):
7447  """get_number_of_proposed_steps(MonteCarlo self) -> unsigned int"""
7448  return _IMP_core.MonteCarlo_get_number_of_proposed_steps(self)
7449 
7450 
7451  def get_number_of_accepted_steps(self):
7452  """get_number_of_accepted_steps(MonteCarlo self) -> unsigned int"""
7453  return _IMP_core.MonteCarlo_get_number_of_accepted_steps(self)
7454 
7455 
7456  def reset_statistics(self):
7457  """reset_statistics(MonteCarlo self)"""
7458  return _IMP_core.MonteCarlo_reset_statistics(self)
7459 
7460 
7461  def set_score_threshold(self, s):
7462  """set_score_threshold(MonteCarlo self, double s)"""
7463  return _IMP_core.MonteCarlo_set_score_threshold(self, s)
7464 
7465 
7466  def get_score_threshold(self):
7467  """get_score_threshold(MonteCarlo self) -> double"""
7468  return _IMP_core.MonteCarlo_get_score_threshold(self)
7469 
7470 
7471  def set_maximum_difference(self, d):
7472  """set_maximum_difference(MonteCarlo self, double d)"""
7473  return _IMP_core.MonteCarlo_set_maximum_difference(self, d)
7474 
7475 
7476  def get_maximum_difference(self):
7477  """get_maximum_difference(MonteCarlo self) -> double"""
7478  return _IMP_core.MonteCarlo_get_maximum_difference(self)
7479 
7480 
7481  def remove_mover(self, d):
7482  """remove_mover(MonteCarlo self, MonteCarloMover d)"""
7483  return _IMP_core.MonteCarlo_remove_mover(self, d)
7484 
7485 
7486  def remove_movers(self, d):
7487  """remove_movers(MonteCarlo self, IMP::core::MonteCarloMovers const & d)"""
7488  return _IMP_core.MonteCarlo_remove_movers(self, d)
7489 
7490 
7491  def set_movers(self, ps):
7492  """set_movers(MonteCarlo self, IMP::core::MonteCarloMovers const & ps)"""
7493  return _IMP_core.MonteCarlo_set_movers(self, ps)
7494 
7495 
7496  def set_movers_order(self, objs):
7497  """set_movers_order(MonteCarlo self, IMP::core::MonteCarloMovers const & objs)"""
7498  return _IMP_core.MonteCarlo_set_movers_order(self, objs)
7499 
7500 
7501  def add_mover(self, obj):
7502  """add_mover(MonteCarlo self, MonteCarloMover obj) -> unsigned int"""
7503  return _IMP_core.MonteCarlo_add_mover(self, obj)
7504 
7505 
7506  def add_movers(self, objs):
7507  """add_movers(MonteCarlo self, IMP::core::MonteCarloMovers const & objs)"""
7508  return _IMP_core.MonteCarlo_add_movers(self, objs)
7509 
7510 
7511  def clear_movers(self):
7512  """clear_movers(MonteCarlo self)"""
7513  return _IMP_core.MonteCarlo_clear_movers(self)
7514 
7515 
7516  def get_number_of_movers(self):
7517  """get_number_of_movers(MonteCarlo self) -> unsigned int"""
7518  return _IMP_core.MonteCarlo_get_number_of_movers(self)
7519 
7520 
7521  def get_has_movers(self):
7522  """get_has_movers(MonteCarlo self) -> bool"""
7523  return _IMP_core.MonteCarlo_get_has_movers(self)
7524 
7525 
7526  def get_mover(self, i):
7527  """get_mover(MonteCarlo self, unsigned int i) -> MonteCarloMover"""
7528  return _IMP_core.MonteCarlo_get_mover(self, i)
7529 
7530 
7531  def get_movers(self):
7532  """get_movers(MonteCarlo self) -> IMP::core::MonteCarloMovers"""
7533  return _IMP_core.MonteCarlo_get_movers(self)
7534 
7535 
7536  def reserve_movers(self, sz):
7537  """reserve_movers(MonteCarlo self, unsigned int sz)"""
7538  return _IMP_core.MonteCarlo_reserve_movers(self, sz)
7539 
7540 
7541  def set_incremental_scoring_function(self, isf):
7542  """set_incremental_scoring_function(MonteCarlo self, IncrementalScoringFunction isf)"""
7543  return _IMP_core.MonteCarlo_set_incremental_scoring_function(self, isf)
7544 
7545 
7546  def get_use_incremental_scoring_function(self):
7547  """get_use_incremental_scoring_function(MonteCarlo self) -> bool"""
7548  return _IMP_core.MonteCarlo_get_use_incremental_scoring_function(self)
7549 
7550 
7551  def get_incremental_scoring_function(self):
7552  """get_incremental_scoring_function(MonteCarlo self) -> IncrementalScoringFunction"""
7553  return _IMP_core.MonteCarlo_get_incremental_scoring_function(self)
7554 
7555 
7556  def __str__(self):
7557  """__str__(MonteCarlo self) -> std::string"""
7558  return _IMP_core.MonteCarlo___str__(self)
7559 
7560 
7561  def __repr__(self):
7562  """__repr__(MonteCarlo self) -> std::string"""
7563  return _IMP_core.MonteCarlo___repr__(self)
7564 
7565 
7566  @staticmethod
7567  def get_from(o):
7568  return _object_cast_to_MonteCarlo(o)
7569 
7570 MonteCarlo_swigregister = _IMP_core.MonteCarlo_swigregister
7571 MonteCarlo_swigregister(MonteCarlo)
7572 
7573 class MonteCarloWithLocalOptimization(MonteCarlo):
7574  """Proxy of C++ IMP::core::MonteCarloWithLocalOptimization class."""
7575 
7576  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
7577 
7578  def __init__(self, opt, steps):
7579  """__init__(IMP::core::MonteCarloWithLocalOptimization self, Optimizer opt, unsigned int steps) -> MonteCarloWithLocalOptimization"""
7580  this = _IMP_core.new_MonteCarloWithLocalOptimization(opt, steps)
7581  try:
7582  self.this.append(this)
7583  except __builtin__.Exception:
7584  self.this = this
7585 
7586  def get_number_of_steps(self):
7587  """get_number_of_steps(MonteCarloWithLocalOptimization self) -> unsigned int"""
7588  return _IMP_core.MonteCarloWithLocalOptimization_get_number_of_steps(self)
7589 
7590 
7591  def get_local_optimizer(self):
7592  """get_local_optimizer(MonteCarloWithLocalOptimization self) -> Optimizer"""
7593  return _IMP_core.MonteCarloWithLocalOptimization_get_local_optimizer(self)
7594 
7595 
7596  def __str__(self):
7597  """__str__(MonteCarloWithLocalOptimization self) -> std::string"""
7598  return _IMP_core.MonteCarloWithLocalOptimization___str__(self)
7599 
7600 
7601  def __repr__(self):
7602  """__repr__(MonteCarloWithLocalOptimization self) -> std::string"""
7603  return _IMP_core.MonteCarloWithLocalOptimization___repr__(self)
7604 
7605 
7606  @staticmethod
7607  def get_from(o):
7608  return _object_cast_to_MonteCarloWithLocalOptimization(o)
7609 
7610 MonteCarloWithLocalOptimization_swigregister = _IMP_core.MonteCarloWithLocalOptimization_swigregister
7611 MonteCarloWithLocalOptimization_swigregister(MonteCarloWithLocalOptimization)
7612 
7613 class MonteCarloWithBasinHopping(MonteCarloWithLocalOptimization):
7614  """Proxy of C++ IMP::core::MonteCarloWithBasinHopping class."""
7615 
7616  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
7617 
7618  def __init__(self, opt, ns):
7619  """__init__(IMP::core::MonteCarloWithBasinHopping self, Optimizer opt, unsigned int ns) -> MonteCarloWithBasinHopping"""
7620  this = _IMP_core.new_MonteCarloWithBasinHopping(opt, ns)
7621  try:
7622  self.this.append(this)
7623  except __builtin__.Exception:
7624  self.this = this
7625 
7626  def __str__(self):
7627  """__str__(MonteCarloWithBasinHopping self) -> std::string"""
7628  return _IMP_core.MonteCarloWithBasinHopping___str__(self)
7629 
7630 
7631  def __repr__(self):
7632  """__repr__(MonteCarloWithBasinHopping self) -> std::string"""
7633  return _IMP_core.MonteCarloWithBasinHopping___repr__(self)
7634 
7635 
7636  @staticmethod
7637  def get_from(o):
7638  return _object_cast_to_MonteCarloWithBasinHopping(o)
7639 
7640 MonteCarloWithBasinHopping_swigregister = _IMP_core.MonteCarloWithBasinHopping_swigregister
7641 MonteCarloWithBasinHopping_swigregister(MonteCarloWithBasinHopping)
7642 
7643 class NeighborsTable(IMP.ScoreState):
7644  """Proxy of C++ IMP::core::NeighborsTable class."""
7645 
7646  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
7647 
7648  def __init__(self, *args):
7649  """
7650  __init__(IMP::core::NeighborsTable self, PairContainer input, std::string name) -> NeighborsTable
7651  __init__(IMP::core::NeighborsTable self, PairContainer input) -> NeighborsTable
7652  """
7653  this = _IMP_core.new_NeighborsTable(*args)
7654  try:
7655  self.this.append(this)
7656  except __builtin__.Exception:
7657  self.this = this
7658 
7659  def get_neighbors(self, pi):
7660  """get_neighbors(NeighborsTable self, ParticleIndex pi) -> IMP::ParticleIndexes const &"""
7661  return _IMP_core.NeighborsTable_get_neighbors(self, pi)
7662 
7663 
7664  def get_version_info(self):
7665  """get_version_info(NeighborsTable self) -> VersionInfo"""
7666  return _IMP_core.NeighborsTable_get_version_info(self)
7667 
7668 
7669  def __str__(self):
7670  """__str__(NeighborsTable self) -> std::string"""
7671  return _IMP_core.NeighborsTable___str__(self)
7672 
7673 
7674  def __repr__(self):
7675  """__repr__(NeighborsTable self) -> std::string"""
7676  return _IMP_core.NeighborsTable___repr__(self)
7677 
7678 
7679  @staticmethod
7680  def get_from(o):
7681  return _object_cast_to_NeighborsTable(o)
7682 
7683 NeighborsTable_swigregister = _IMP_core.NeighborsTable_swigregister
7684 NeighborsTable_swigregister(NeighborsTable)
7685 
7686 class NormalMover(MonteCarloMover):
7687  """Proxy of C++ IMP::core::NormalMover class."""
7688 
7689  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
7690 
7691  def __init__(self, *args):
7692  """
7693  __init__(IMP::core::NormalMover self, Model m, ParticleIndex pi, IMP::FloatKeys const & vars, double stddev) -> NormalMover
7694  __init__(IMP::core::NormalMover self, Model m, ParticleIndex pi, double stddev) -> NormalMover
7695  __init__(IMP::core::NormalMover self, IMP::ParticlesTemp const & sc, IMP::FloatKeys const & vars, IMP::Float sigma) -> NormalMover
7696  __init__(IMP::core::NormalMover self, IMP::ParticlesTemp const & sc, IMP::Float radius) -> NormalMover
7697  """
7698  this = _IMP_core.new_NormalMover(*args)
7699  try:
7700  self.this.append(this)
7701  except __builtin__.Exception:
7702  self.this = this
7703 
7704  def set_sigma(self, sigma):
7705  """set_sigma(NormalMover self, IMP::Float sigma)"""
7706  return _IMP_core.NormalMover_set_sigma(self, sigma)
7707 
7708 
7709  def get_sigma(self):
7710  """get_sigma(NormalMover self) -> IMP::Float"""
7711  return _IMP_core.NormalMover_get_sigma(self)
7712 
7713 
7714  def get_version_info(self):
7715  """get_version_info(NormalMover self) -> VersionInfo"""
7716  return _IMP_core.NormalMover_get_version_info(self)
7717 
7718 
7719  def __str__(self):
7720  """__str__(NormalMover self) -> std::string"""
7721  return _IMP_core.NormalMover___str__(self)
7722 
7723 
7724  def __repr__(self):
7725  """__repr__(NormalMover self) -> std::string"""
7726  return _IMP_core.NormalMover___repr__(self)
7727 
7728 
7729  @staticmethod
7730  def get_from(o):
7731  return _object_cast_to_NormalMover(o)
7732 
7733 NormalMover_swigregister = _IMP_core.NormalMover_swigregister
7734 NormalMover_swigregister(NormalMover)
7735 
7736 class OpenCubicSpline(_OpenCubicSplineBase):
7737  """Proxy of C++ IMP::core::OpenCubicSpline class."""
7738 
7739  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
7740 
7741  def __init__(self, values, minrange, spacing, extend=False):
7742  """
7743  __init__(IMP::core::OpenCubicSpline self, IMP::Floats const & values, IMP::Float minrange, IMP::Float spacing, bool extend=False) -> OpenCubicSpline
7744  __init__(IMP::core::OpenCubicSpline self, IMP::Floats const & values, IMP::Float minrange, IMP::Float spacing) -> OpenCubicSpline
7745  """
7746  this = _IMP_core.new_OpenCubicSpline(values, minrange, spacing, extend)
7747  try:
7748  self.this.append(this)
7749  except __builtin__.Exception:
7750  self.this = this
7751 
7752  def __str__(self):
7753  """__str__(OpenCubicSpline self) -> std::string"""
7754  return _IMP_core.OpenCubicSpline___str__(self)
7755 
7756 
7757  def __repr__(self):
7758  """__repr__(OpenCubicSpline self) -> std::string"""
7759  return _IMP_core.OpenCubicSpline___repr__(self)
7760 
7761 
7762  @staticmethod
7763  def get_from(o):
7764  return _object_cast_to_OpenCubicSpline(o)
7765 
7766  __swig_destroy__ = _IMP_core.delete_OpenCubicSpline
7767  __del__ = lambda self: None
7768 OpenCubicSpline_swigregister = _IMP_core.OpenCubicSpline_swigregister
7769 OpenCubicSpline_swigregister(OpenCubicSpline)
7770 
7771 class QuadraticClosePairsFinder(ClosePairsFinder):
7772  """Proxy of C++ IMP::core::QuadraticClosePairsFinder class."""
7773 
7774  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
7775 
7776  def __init__(self):
7777  """__init__(IMP::core::QuadraticClosePairsFinder self) -> QuadraticClosePairsFinder"""
7778  this = _IMP_core.new_QuadraticClosePairsFinder()
7779  try:
7780  self.this.append(this)
7781  except __builtin__.Exception:
7782  self.this = this
7783 
7784  def get_are_close_and_filtered(self, *args):
7785  """
7786  get_are_close_and_filtered(QuadraticClosePairsFinder self, Particle a, Particle b) -> bool
7787  get_are_close_and_filtered(QuadraticClosePairsFinder self, Model m, ParticleIndex a, ParticleIndex b) -> bool
7788  """
7789  return _IMP_core.QuadraticClosePairsFinder_get_are_close_and_filtered(self, *args)
7790 
7791 
7792  def get_close_pairs(self, *args):
7793  """
7794  get_close_pairs(QuadraticClosePairsFinder self, IMP::algebra::BoundingBox3Ds const & bbs) -> IMP::IntPairs
7795  get_close_pairs(QuadraticClosePairsFinder self, IMP::algebra::BoundingBox3Ds const & bas, IMP::algebra::BoundingBox3Ds const & bbs) -> IMP::IntPairs
7796  get_close_pairs(QuadraticClosePairsFinder self, Model m, IMP::ParticleIndexes const & pc) -> IMP::ParticleIndexPairs
7797  get_close_pairs(QuadraticClosePairsFinder self, Model m, IMP::ParticleIndexes const & pca, IMP::ParticleIndexes const & pcb) -> IMP::ParticleIndexPairs
7798  """
7799  return _IMP_core.QuadraticClosePairsFinder_get_close_pairs(self, *args)
7800 
7801 
7802  def do_get_inputs(self, m, pis):
7803  """do_get_inputs(QuadraticClosePairsFinder self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
7804  return _IMP_core.QuadraticClosePairsFinder_do_get_inputs(self, m, pis)
7805 
7806 
7807  def get_version_info(self):
7808  """get_version_info(QuadraticClosePairsFinder self) -> VersionInfo"""
7809  return _IMP_core.QuadraticClosePairsFinder_get_version_info(self)
7810 
7811 
7812  def __str__(self):
7813  """__str__(QuadraticClosePairsFinder self) -> std::string"""
7814  return _IMP_core.QuadraticClosePairsFinder___str__(self)
7815 
7816 
7817  def __repr__(self):
7818  """__repr__(QuadraticClosePairsFinder self) -> std::string"""
7819  return _IMP_core.QuadraticClosePairsFinder___repr__(self)
7820 
7821 
7822  @staticmethod
7823  def get_from(o):
7824  return _object_cast_to_QuadraticClosePairsFinder(o)
7825 
7826 QuadraticClosePairsFinder_swigregister = _IMP_core.QuadraticClosePairsFinder_swigregister
7827 QuadraticClosePairsFinder_swigregister(QuadraticClosePairsFinder)
7828 
7829 class RefinedPairsPairScore(IMP.PairScore):
7830  """Proxy of C++ IMP::core::RefinedPairsPairScore class."""
7831 
7832  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
7833 
7834  def __init__(self, r, f):
7835  """__init__(IMP::core::RefinedPairsPairScore self, Refiner r, PairScore f) -> RefinedPairsPairScore"""
7836  this = _IMP_core.new_RefinedPairsPairScore(r, f)
7837  try:
7838  self.this.append(this)
7839  except __builtin__.Exception:
7840  self.this = this
7841 
7842  def do_get_inputs(self, m, pis):
7843  """do_get_inputs(RefinedPairsPairScore self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
7844  return _IMP_core.RefinedPairsPairScore_do_get_inputs(self, m, pis)
7845 
7846 
7847  def get_version_info(self):
7848  """get_version_info(RefinedPairsPairScore self) -> VersionInfo"""
7849  return _IMP_core.RefinedPairsPairScore_get_version_info(self)
7850 
7851 
7852  def __str__(self):
7853  """__str__(RefinedPairsPairScore self) -> std::string"""
7854  return _IMP_core.RefinedPairsPairScore___str__(self)
7855 
7856 
7857  def __repr__(self):
7858  """__repr__(RefinedPairsPairScore self) -> std::string"""
7859  return _IMP_core.RefinedPairsPairScore___repr__(self)
7860 
7861 
7862  @staticmethod
7863  def get_from(o):
7864  return _object_cast_to_RefinedPairsPairScore(o)
7865 
7866 RefinedPairsPairScore_swigregister = _IMP_core.RefinedPairsPairScore_swigregister
7867 RefinedPairsPairScore_swigregister(RefinedPairsPairScore)
7868 
7869 class RigidBody(XYZ):
7870  """Proxy of C++ IMP::core::RigidBody class."""
7871 
7872  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
7873 
7874  def get_rigid_members(self):
7875  """get_rigid_members(RigidBody self) -> IMP::core::RigidMembers"""
7876  return _IMP_core.RigidBody_get_rigid_members(self)
7877 
7878 
7879  def get_member_particle_indexes(self):
7880  """get_member_particle_indexes(RigidBody self) -> IMP::ParticleIndexes const &"""
7881  return _IMP_core.RigidBody_get_member_particle_indexes(self)
7882 
7883 
7884  def get_body_member_particle_indexes(self):
7885  """get_body_member_particle_indexes(RigidBody self) -> IMP::ParticleIndexes const &"""
7886  return _IMP_core.RigidBody_get_body_member_particle_indexes(self)
7887 
7888 
7889  def get_member_indexes(self):
7890  """get_member_indexes(RigidBody self) -> IMP::ParticleIndexes"""
7891  return _IMP_core.RigidBody_get_member_indexes(self)
7892 
7893 
7894  def __init__(self, *args):
7895  """
7896  __init__(IMP::core::RigidBody self) -> RigidBody
7897  __init__(IMP::core::RigidBody self, Model m, ParticleIndex id) -> RigidBody
7898  __init__(IMP::core::RigidBody self, _ParticleAdaptor d) -> RigidBody
7899  """
7900  this = _IMP_core.new_RigidBody(*args)
7901  try:
7902  self.this.append(this)
7903  except __builtin__.Exception:
7904  self.this = this
7905 
7906  def show(self, *args):
7907  """
7908  show(RigidBody self, _ostream out)
7909  show(RigidBody self)
7910  """
7911  return _IMP_core.RigidBody_show(self, *args)
7912 
7913 
7914  def setup_particle(*args):
7915  """
7916  setup_particle(Model m, ParticleIndex pi, _ParticleIndexesAdaptor ps) -> RigidBody
7917  setup_particle(_ParticleAdaptor decorator, _ParticleIndexesAdaptor ps) -> RigidBody
7918  setup_particle(Model m, ParticleIndex pi, ReferenceFrame3D rf) -> RigidBody
7919  setup_particle(_ParticleAdaptor decorator, ReferenceFrame3D rf) -> RigidBody
7920  """
7921  return _IMP_core.RigidBody_setup_particle(*args)
7922 
7923  setup_particle = staticmethod(setup_particle)
7924 
7925  def teardown_particle(rb):
7926  """teardown_particle(RigidBody rb)"""
7927  return _IMP_core.RigidBody_teardown_particle(rb)
7928 
7929  teardown_particle = staticmethod(teardown_particle)
7930  __swig_destroy__ = _IMP_core.delete_RigidBody
7931  __del__ = lambda self: None
7932 
7933  def get_is_setup(*args):
7934  """
7935  get_is_setup(_ParticleAdaptor p) -> bool
7936  get_is_setup(Model m, ParticleIndex pi) -> bool
7937  """
7938  return _IMP_core.RigidBody_get_is_setup(*args)
7939 
7940  get_is_setup = staticmethod(get_is_setup)
7941 
7942  def get_coordinates(self):
7943  """get_coordinates(RigidBody self) -> Vector3D"""
7944  return _IMP_core.RigidBody_get_coordinates(self)
7945 
7946 
7947  def get_rotation(self):
7948  """get_rotation(RigidBody self) -> Rotation3D"""
7949  return _IMP_core.RigidBody_get_rotation(self)
7950 
7951 
7952  def get_reference_frame(self):
7953  """get_reference_frame(RigidBody self) -> ReferenceFrame3D"""
7954  return _IMP_core.RigidBody_get_reference_frame(self)
7955 
7956 
7957  def set_reference_frame(self, tr):
7958  """set_reference_frame(RigidBody self, ReferenceFrame3D tr)"""
7959  return _IMP_core.RigidBody_set_reference_frame(self, tr)
7960 
7961 
7962  def set_reference_frame_lazy(self, tr):
7963  """set_reference_frame_lazy(RigidBody self, ReferenceFrame3D tr)"""
7964  return _IMP_core.RigidBody_set_reference_frame_lazy(self, tr)
7965 
7966 
7967  def set_reference_frame_from_members(self, members):
7968  """set_reference_frame_from_members(RigidBody self, IMP::ParticleIndexes const & members)"""
7969  return _IMP_core.RigidBody_set_reference_frame_from_members(self, members)
7970 
7971 
7972  def add_to_derivatives(self, *args):
7973  """
7974  add_to_derivatives(RigidBody self, Vector3D local_derivative, Vector3D local_location, DerivativeAccumulator da)
7975  add_to_derivatives(RigidBody self, Vector3D local_derivative, Vector3D global_derivative, Vector3D local_location, Rotation3D rot_local_to_global, DerivativeAccumulator da)
7976  """
7977  return _IMP_core.RigidBody_add_to_derivatives(self, *args)
7978 
7979 
7980  def add_to_rotational_derivatives(self, *args):
7981  """
7982  add_to_rotational_derivatives(RigidBody self, Vector4D other_qderiv, Rotation3D rot_other_to_local, Rotation3D rot_local_to_global, DerivativeAccumulator da)
7983  add_to_rotational_derivatives(RigidBody self, Vector4D qderiv, DerivativeAccumulator da)
7984  """
7985  return _IMP_core.RigidBody_add_to_rotational_derivatives(self, *args)
7986 
7987 
7988  def add_to_torque(self, torque_local, da):
7989  """add_to_torque(RigidBody self, Vector3D torque_local, DerivativeAccumulator da)"""
7990  return _IMP_core.RigidBody_add_to_torque(self, torque_local, da)
7991 
7992 
7993  def get_torque(self):
7994  """get_torque(RigidBody self) -> Vector3D"""
7995  return _IMP_core.RigidBody_get_torque(self)
7996 
7997 
7998  def get_coordinates_are_optimized(self):
7999  """get_coordinates_are_optimized(RigidBody self) -> bool"""
8000  return _IMP_core.RigidBody_get_coordinates_are_optimized(self)
8001 
8002 
8003  def set_coordinates_are_optimized(self, tf):
8004  """set_coordinates_are_optimized(RigidBody self, bool tf)"""
8005  return _IMP_core.RigidBody_set_coordinates_are_optimized(self, tf)
8006 
8007 
8008  def normalize_rotation(self):
8009  """normalize_rotation(RigidBody self)"""
8010  return _IMP_core.RigidBody_normalize_rotation(self)
8011 
8012 
8013  def update_members(self):
8014  """update_members(RigidBody self)"""
8015  return _IMP_core.RigidBody_update_members(self)
8016 
8017 
8018  def get_rotational_derivatives(self):
8019  """get_rotational_derivatives(RigidBody self) -> Vector4D"""
8020  return _IMP_core.RigidBody_get_rotational_derivatives(self)
8021 
8022 
8023  def get_number_of_members(self):
8024  """get_number_of_members(RigidBody self) -> unsigned int"""
8025  return _IMP_core.RigidBody_get_number_of_members(self)
8026 
8027 
8028  def get_member(self, i):
8029  """get_member(RigidBody self, unsigned int i) -> RigidBodyMember"""
8030  return _IMP_core.RigidBody_get_member(self, i)
8031 
8032 
8033  def add_member(self, p):
8034  """add_member(RigidBody self, _ParticleIndexAdaptor p)"""
8035  return _IMP_core.RigidBody_add_member(self, p)
8036 
8037 
8038  def add_non_rigid_member(self, p):
8039  """add_non_rigid_member(RigidBody self, _ParticleIndexAdaptor p)"""
8040  return _IMP_core.RigidBody_add_non_rigid_member(self, p)
8041 
8042 
8043  def set_is_rigid_member(self, pi, tf):
8044  """set_is_rigid_member(RigidBody self, ParticleIndex pi, bool tf)"""
8045  return _IMP_core.RigidBody_set_is_rigid_member(self, pi, tf)
8046 
8047 
8048  def add_attribute(self, *args):
8049  """
8050  add_attribute(RigidBody self, FloatKey k, IMP::Float v, bool opt)
8051  add_attribute(RigidBody self, FloatKey a0, IMP::Float a1)
8052  add_attribute(RigidBody self, IntKey a0, IMP::Int a1)
8053  add_attribute(RigidBody self, StringKey a0, IMP::String a1)
8054  add_attribute(RigidBody self, ParticleIndexKey a0, Particle a1)
8055  add_attribute(RigidBody self, ObjectKey a0, Object a1)
8056  """
8057  return _IMP_core.RigidBody_add_attribute(self, *args)
8058 
8059 
8060  def get_value(self, *args):
8061  """
8062  get_value(RigidBody self, FloatKey a0) -> IMP::Float
8063  get_value(RigidBody self, IntKey a0) -> IMP::Int
8064  get_value(RigidBody self, StringKey a0) -> IMP::String
8065  get_value(RigidBody self, ParticleIndexKey a0) -> Particle
8066  get_value(RigidBody self, ObjectKey a0) -> Object
8067  """
8068  return _IMP_core.RigidBody_get_value(self, *args)
8069 
8070 
8071  def set_value(self, *args):
8072  """
8073  set_value(RigidBody self, FloatKey a0, IMP::Float a1)
8074  set_value(RigidBody self, IntKey a0, IMP::Int a1)
8075  set_value(RigidBody self, StringKey a0, IMP::String a1)
8076  set_value(RigidBody self, ParticleIndexKey a0, Particle a1)
8077  set_value(RigidBody self, ObjectKey a0, Object a1)
8078  """
8079  return _IMP_core.RigidBody_set_value(self, *args)
8080 
8081 
8082  def remove_attribute(self, *args):
8083  """
8084  remove_attribute(RigidBody self, FloatKey a0)
8085  remove_attribute(RigidBody self, IntKey a0)
8086  remove_attribute(RigidBody self, StringKey a0)
8087  remove_attribute(RigidBody self, ParticleIndexKey a0)
8088  remove_attribute(RigidBody self, ObjectKey a0)
8089  """
8090  return _IMP_core.RigidBody_remove_attribute(self, *args)
8091 
8092 
8093  def has_attribute(self, *args):
8094  """
8095  has_attribute(RigidBody self, FloatKey a0) -> bool
8096  has_attribute(RigidBody self, IntKey a0) -> bool
8097  has_attribute(RigidBody self, StringKey a0) -> bool
8098  has_attribute(RigidBody self, ParticleIndexKey a0) -> bool
8099  has_attribute(RigidBody self, ObjectKey a0) -> bool
8100  """
8101  return _IMP_core.RigidBody_has_attribute(self, *args)
8102 
8103 
8104  def get_derivative(self, a0):
8105  """get_derivative(RigidBody self, FloatKey a0) -> double"""
8106  return _IMP_core.RigidBody_get_derivative(self, a0)
8107 
8108 
8109  def get_name(self):
8110  """get_name(RigidBody self) -> std::string"""
8111  return _IMP_core.RigidBody_get_name(self)
8112 
8113 
8114  def clear_caches(self):
8115  """clear_caches(RigidBody self)"""
8116  return _IMP_core.RigidBody_clear_caches(self)
8117 
8118 
8119  def set_name(self, a0):
8120  """set_name(RigidBody self, std::string a0)"""
8121  return _IMP_core.RigidBody_set_name(self, a0)
8122 
8123 
8124  def set_check_level(self, a0):
8125  """set_check_level(RigidBody self, IMP::CheckLevel a0)"""
8126  return _IMP_core.RigidBody_set_check_level(self, a0)
8127 
8128 
8129  def add_to_derivative(self, a0, a1, a2):
8130  """add_to_derivative(RigidBody self, FloatKey a0, double a1, DerivativeAccumulator a2)"""
8131  return _IMP_core.RigidBody_add_to_derivative(self, a0, a1, a2)
8132 
8133 
8134  def set_is_optimized(self, a0, a1):
8135  """set_is_optimized(RigidBody self, FloatKey a0, bool a1)"""
8136  return _IMP_core.RigidBody_set_is_optimized(self, a0, a1)
8137 
8138 
8139  def get_is_optimized(self, a0):
8140  """get_is_optimized(RigidBody self, FloatKey a0) -> bool"""
8141  return _IMP_core.RigidBody_get_is_optimized(self, a0)
8142 
8143 
8144  def get_check_level(self):
8145  """get_check_level(RigidBody self) -> IMP::CheckLevel"""
8146  return _IMP_core.RigidBody_get_check_level(self)
8147 
8148 
8149  def __eq__(self, *args):
8150  """
8151  __eq__(RigidBody self, RigidBody o) -> bool
8152  __eq__(RigidBody self, Particle d) -> bool
8153  """
8154  return _IMP_core.RigidBody___eq__(self, *args)
8155 
8156 
8157  def __ne__(self, *args):
8158  """
8159  __ne__(RigidBody self, RigidBody o) -> bool
8160  __ne__(RigidBody self, Particle d) -> bool
8161  """
8162  return _IMP_core.RigidBody___ne__(self, *args)
8163 
8164 
8165  def __le__(self, *args):
8166  """
8167  __le__(RigidBody self, RigidBody o) -> bool
8168  __le__(RigidBody self, Particle d) -> bool
8169  """
8170  return _IMP_core.RigidBody___le__(self, *args)
8171 
8172 
8173  def __lt__(self, *args):
8174  """
8175  __lt__(RigidBody self, RigidBody o) -> bool
8176  __lt__(RigidBody self, Particle d) -> bool
8177  """
8178  return _IMP_core.RigidBody___lt__(self, *args)
8179 
8180 
8181  def __ge__(self, *args):
8182  """
8183  __ge__(RigidBody self, RigidBody o) -> bool
8184  __ge__(RigidBody self, Particle d) -> bool
8185  """
8186  return _IMP_core.RigidBody___ge__(self, *args)
8187 
8188 
8189  def __gt__(self, *args):
8190  """
8191  __gt__(RigidBody self, RigidBody o) -> bool
8192  __gt__(RigidBody self, Particle d) -> bool
8193  """
8194  return _IMP_core.RigidBody___gt__(self, *args)
8195 
8196 
8197  def __hash__(self):
8198  """__hash__(RigidBody self) -> std::size_t"""
8199  return _IMP_core.RigidBody___hash__(self)
8200 
8201 
8202  def __str__(self):
8203  """__str__(RigidBody self) -> std::string"""
8204  return _IMP_core.RigidBody___str__(self)
8205 
8206 
8207  def __repr__(self):
8208  """__repr__(RigidBody self) -> std::string"""
8209  return _IMP_core.RigidBody___repr__(self)
8210 
8211 RigidBody_swigregister = _IMP_core.RigidBody_swigregister
8212 RigidBody_swigregister(RigidBody)
8213 
8214 def RigidBody_setup_particle(*args):
8215  """
8216  setup_particle(Model m, ParticleIndex pi, _ParticleIndexesAdaptor ps) -> RigidBody
8217  setup_particle(_ParticleAdaptor decorator, _ParticleIndexesAdaptor ps) -> RigidBody
8218  setup_particle(Model m, ParticleIndex pi, ReferenceFrame3D rf) -> RigidBody
8219  RigidBody_setup_particle(_ParticleAdaptor decorator, ReferenceFrame3D rf) -> RigidBody
8220  """
8221  return _IMP_core.RigidBody_setup_particle(*args)
8222 
8223 def RigidBody_teardown_particle(rb):
8224  """RigidBody_teardown_particle(RigidBody rb)"""
8225  return _IMP_core.RigidBody_teardown_particle(rb)
8226 
8227 def RigidBody_get_is_setup(*args):
8228  """
8229  get_is_setup(_ParticleAdaptor p) -> bool
8230  RigidBody_get_is_setup(Model m, ParticleIndex pi) -> bool
8231  """
8232  return _IMP_core.RigidBody_get_is_setup(*args)
8233 
8234 
8236  """add_rigid_body_cache_key(ObjectKey k)"""
8237  return _IMP_core.add_rigid_body_cache_key(k)
8238 class RigidBodyMember(XYZ):
8239  """Proxy of C++ IMP::core::RigidBodyMember class."""
8240 
8241  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
8242 
8243  def __init__(self, *args):
8244  """
8245  __init__(IMP::core::RigidBodyMember self) -> RigidBodyMember
8246  __init__(IMP::core::RigidBodyMember self, Model m, ParticleIndex id) -> RigidBodyMember
8247  __init__(IMP::core::RigidBodyMember self, _ParticleAdaptor d) -> RigidBodyMember
8248  """
8249  this = _IMP_core.new_RigidBodyMember(*args)
8250  try:
8251  self.this.append(this)
8252  except __builtin__.Exception:
8253  self.this = this
8254 
8255  def show(self, *args):
8256  """
8257  show(RigidBodyMember self, _ostream out)
8258  show(RigidBodyMember self)
8259  """
8260  return _IMP_core.RigidBodyMember_show(self, *args)
8261 
8262 
8263  def get_rigid_body(self):
8264  """get_rigid_body(RigidBodyMember self) -> RigidBody"""
8265  return _IMP_core.RigidBodyMember_get_rigid_body(self)
8266 
8267 
8268  def get_internal_coordinates(self):
8269  """get_internal_coordinates(RigidBodyMember self) -> Vector3D"""
8270  return _IMP_core.RigidBodyMember_get_internal_coordinates(self)
8271 
8272 
8273  def set_internal_coordinates(self, v):
8274  """set_internal_coordinates(RigidBodyMember self, Vector3D v)"""
8275  return _IMP_core.RigidBodyMember_set_internal_coordinates(self, v)
8276 
8277 
8278  def set_internal_transformation(self, v):
8279  """set_internal_transformation(RigidBodyMember self, Transformation3D v)"""
8280  return _IMP_core.RigidBodyMember_set_internal_transformation(self, v)
8281 
8282 
8283  def get_internal_transformation(self):
8284  """get_internal_transformation(RigidBodyMember self) -> Transformation3D"""
8285  return _IMP_core.RigidBodyMember_get_internal_transformation(self)
8286 
8287  __swig_destroy__ = _IMP_core.delete_RigidBodyMember
8288  __del__ = lambda self: None
8289 
8290  def set_coordinates(self, *args):
8291  """
8292  set_coordinates(RigidBodyMember self, Vector3D center)
8293  set_coordinates(RigidBodyMember self, Transformation3D tr)
8294  """
8295  return _IMP_core.RigidBodyMember_set_coordinates(self, *args)
8296 
8297 
8298  def get_is_setup(*args):
8299  """
8300  get_is_setup(_ParticleAdaptor p) -> bool
8301  get_is_setup(Model m, _ParticleIndexAdaptor p) -> bool
8302  """
8303  return _IMP_core.RigidBodyMember_get_is_setup(*args)
8304 
8305  get_is_setup = staticmethod(get_is_setup)
8306 
8307  def get_internal_coordinate_keys():
8308  """get_internal_coordinate_keys() -> IMP::FloatKeys"""
8309  return _IMP_core.RigidBodyMember_get_internal_coordinate_keys()
8310 
8311  get_internal_coordinate_keys = staticmethod(get_internal_coordinate_keys)
8312 
8313  def get_internal_rotation_keys():
8314  """get_internal_rotation_keys() -> IMP::FloatKeys"""
8315  return _IMP_core.RigidBodyMember_get_internal_rotation_keys()
8316 
8317  get_internal_rotation_keys = staticmethod(get_internal_rotation_keys)
8318 
8319  def add_attribute(self, *args):
8320  """
8321  add_attribute(RigidBodyMember self, FloatKey k, IMP::Float v, bool opt)
8322  add_attribute(RigidBodyMember self, FloatKey a0, IMP::Float a1)
8323  add_attribute(RigidBodyMember self, IntKey a0, IMP::Int a1)
8324  add_attribute(RigidBodyMember self, StringKey a0, IMP::String a1)
8325  add_attribute(RigidBodyMember self, ParticleIndexKey a0, Particle a1)
8326  add_attribute(RigidBodyMember self, ObjectKey a0, Object a1)
8327  """
8328  return _IMP_core.RigidBodyMember_add_attribute(self, *args)
8329 
8330 
8331  def get_value(self, *args):
8332  """
8333  get_value(RigidBodyMember self, FloatKey a0) -> IMP::Float
8334  get_value(RigidBodyMember self, IntKey a0) -> IMP::Int
8335  get_value(RigidBodyMember self, StringKey a0) -> IMP::String
8336  get_value(RigidBodyMember self, ParticleIndexKey a0) -> Particle
8337  get_value(RigidBodyMember self, ObjectKey a0) -> Object
8338  """
8339  return _IMP_core.RigidBodyMember_get_value(self, *args)
8340 
8341 
8342  def set_value(self, *args):
8343  """
8344  set_value(RigidBodyMember self, FloatKey a0, IMP::Float a1)
8345  set_value(RigidBodyMember self, IntKey a0, IMP::Int a1)
8346  set_value(RigidBodyMember self, StringKey a0, IMP::String a1)
8347  set_value(RigidBodyMember self, ParticleIndexKey a0, Particle a1)
8348  set_value(RigidBodyMember self, ObjectKey a0, Object a1)
8349  """
8350  return _IMP_core.RigidBodyMember_set_value(self, *args)
8351 
8352 
8353  def remove_attribute(self, *args):
8354  """
8355  remove_attribute(RigidBodyMember self, FloatKey a0)
8356  remove_attribute(RigidBodyMember self, IntKey a0)
8357  remove_attribute(RigidBodyMember self, StringKey a0)
8358  remove_attribute(RigidBodyMember self, ParticleIndexKey a0)
8359  remove_attribute(RigidBodyMember self, ObjectKey a0)
8360  """
8361  return _IMP_core.RigidBodyMember_remove_attribute(self, *args)
8362 
8363 
8364  def has_attribute(self, *args):
8365  """
8366  has_attribute(RigidBodyMember self, FloatKey a0) -> bool
8367  has_attribute(RigidBodyMember self, IntKey a0) -> bool
8368  has_attribute(RigidBodyMember self, StringKey a0) -> bool
8369  has_attribute(RigidBodyMember self, ParticleIndexKey a0) -> bool
8370  has_attribute(RigidBodyMember self, ObjectKey a0) -> bool
8371  """
8372  return _IMP_core.RigidBodyMember_has_attribute(self, *args)
8373 
8374 
8375  def get_derivative(self, a0):
8376  """get_derivative(RigidBodyMember self, FloatKey a0) -> double"""
8377  return _IMP_core.RigidBodyMember_get_derivative(self, a0)
8378 
8379 
8380  def get_name(self):
8381  """get_name(RigidBodyMember self) -> std::string"""
8382  return _IMP_core.RigidBodyMember_get_name(self)
8383 
8384 
8385  def clear_caches(self):
8386  """clear_caches(RigidBodyMember self)"""
8387  return _IMP_core.RigidBodyMember_clear_caches(self)
8388 
8389 
8390  def set_name(self, a0):
8391  """set_name(RigidBodyMember self, std::string a0)"""
8392  return _IMP_core.RigidBodyMember_set_name(self, a0)
8393 
8394 
8395  def set_check_level(self, a0):
8396  """set_check_level(RigidBodyMember self, IMP::CheckLevel a0)"""
8397  return _IMP_core.RigidBodyMember_set_check_level(self, a0)
8398 
8399 
8400  def add_to_derivative(self, a0, a1, a2):
8401  """add_to_derivative(RigidBodyMember self, FloatKey a0, double a1, DerivativeAccumulator a2)"""
8402  return _IMP_core.RigidBodyMember_add_to_derivative(self, a0, a1, a2)
8403 
8404 
8405  def set_is_optimized(self, a0, a1):
8406  """set_is_optimized(RigidBodyMember self, FloatKey a0, bool a1)"""
8407  return _IMP_core.RigidBodyMember_set_is_optimized(self, a0, a1)
8408 
8409 
8410  def get_is_optimized(self, a0):
8411  """get_is_optimized(RigidBodyMember self, FloatKey a0) -> bool"""
8412  return _IMP_core.RigidBodyMember_get_is_optimized(self, a0)
8413 
8414 
8415  def get_check_level(self):
8416  """get_check_level(RigidBodyMember self) -> IMP::CheckLevel"""
8417  return _IMP_core.RigidBodyMember_get_check_level(self)
8418 
8419 
8420  def __eq__(self, *args):
8421  """
8422  __eq__(RigidBodyMember self, RigidBodyMember o) -> bool
8423  __eq__(RigidBodyMember self, Particle d) -> bool
8424  """
8425  return _IMP_core.RigidBodyMember___eq__(self, *args)
8426 
8427 
8428  def __ne__(self, *args):
8429  """
8430  __ne__(RigidBodyMember self, RigidBodyMember o) -> bool
8431  __ne__(RigidBodyMember self, Particle d) -> bool
8432  """
8433  return _IMP_core.RigidBodyMember___ne__(self, *args)
8434 
8435 
8436  def __le__(self, *args):
8437  """
8438  __le__(RigidBodyMember self, RigidBodyMember o) -> bool
8439  __le__(RigidBodyMember self, Particle d) -> bool
8440  """
8441  return _IMP_core.RigidBodyMember___le__(self, *args)
8442 
8443 
8444  def __lt__(self, *args):
8445  """
8446  __lt__(RigidBodyMember self, RigidBodyMember o) -> bool
8447  __lt__(RigidBodyMember self, Particle d) -> bool
8448  """
8449  return _IMP_core.RigidBodyMember___lt__(self, *args)
8450 
8451 
8452  def __ge__(self, *args):
8453  """
8454  __ge__(RigidBodyMember self, RigidBodyMember o) -> bool
8455  __ge__(RigidBodyMember self, Particle d) -> bool
8456  """
8457  return _IMP_core.RigidBodyMember___ge__(self, *args)
8458 
8459 
8460  def __gt__(self, *args):
8461  """
8462  __gt__(RigidBodyMember self, RigidBodyMember o) -> bool
8463  __gt__(RigidBodyMember self, Particle d) -> bool
8464  """
8465  return _IMP_core.RigidBodyMember___gt__(self, *args)
8466 
8467 
8468  def __hash__(self):
8469  """__hash__(RigidBodyMember self) -> std::size_t"""
8470  return _IMP_core.RigidBodyMember___hash__(self)
8471 
8472 
8473  def __str__(self):
8474  """__str__(RigidBodyMember self) -> std::string"""
8475  return _IMP_core.RigidBodyMember___str__(self)
8476 
8477 
8478  def __repr__(self):
8479  """__repr__(RigidBodyMember self) -> std::string"""
8480  return _IMP_core.RigidBodyMember___repr__(self)
8481 
8482 RigidBodyMember_swigregister = _IMP_core.RigidBodyMember_swigregister
8483 RigidBodyMember_swigregister(RigidBodyMember)
8484 
8485 def RigidBodyMember_get_is_setup(*args):
8486  """
8487  get_is_setup(_ParticleAdaptor p) -> bool
8488  RigidBodyMember_get_is_setup(Model m, _ParticleIndexAdaptor p) -> bool
8489  """
8490  return _IMP_core.RigidBodyMember_get_is_setup(*args)
8491 
8492 def RigidBodyMember_get_internal_coordinate_keys():
8493  """RigidBodyMember_get_internal_coordinate_keys() -> IMP::FloatKeys"""
8494  return _IMP_core.RigidBodyMember_get_internal_coordinate_keys()
8495 
8496 def RigidBodyMember_get_internal_rotation_keys():
8497  """RigidBodyMember_get_internal_rotation_keys() -> IMP::FloatKeys"""
8498  return _IMP_core.RigidBodyMember_get_internal_rotation_keys()
8499 
8500 class RigidMember(RigidBodyMember):
8501  """Proxy of C++ IMP::core::RigidMember class."""
8502 
8503  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
8504 
8505  def __init__(self, *args):
8506  """
8507  __init__(IMP::core::RigidMember self) -> RigidMember
8508  __init__(IMP::core::RigidMember self, Model m, ParticleIndex id) -> RigidMember
8509  __init__(IMP::core::RigidMember self, _ParticleAdaptor d) -> RigidMember
8510  """
8511  this = _IMP_core.new_RigidMember(*args)
8512  try:
8513  self.this.append(this)
8514  except __builtin__.Exception:
8515  self.this = this
8516 
8517  def show(self, *args):
8518  """
8519  show(RigidMember self, _ostream out)
8520  show(RigidMember self)
8521  """
8522  return _IMP_core.RigidMember_show(self, *args)
8523 
8524  __swig_destroy__ = _IMP_core.delete_RigidMember
8525  __del__ = lambda self: None
8526 
8527  def get_is_setup(*args):
8528  """
8529  get_is_setup(_ParticleAdaptor p) -> bool
8530  get_is_setup(Model m, _ParticleIndexAdaptor p) -> bool
8531  """
8532  return _IMP_core.RigidMember_get_is_setup(*args)
8533 
8534  get_is_setup = staticmethod(get_is_setup)
8535 
8536  def add_attribute(self, *args):
8537  """
8538  add_attribute(RigidMember self, FloatKey k, IMP::Float v, bool opt)
8539  add_attribute(RigidMember self, FloatKey a0, IMP::Float a1)
8540  add_attribute(RigidMember self, IntKey a0, IMP::Int a1)
8541  add_attribute(RigidMember self, StringKey a0, IMP::String a1)
8542  add_attribute(RigidMember self, ParticleIndexKey a0, Particle a1)
8543  add_attribute(RigidMember self, ObjectKey a0, Object a1)
8544  """
8545  return _IMP_core.RigidMember_add_attribute(self, *args)
8546 
8547 
8548  def get_value(self, *args):
8549  """
8550  get_value(RigidMember self, FloatKey a0) -> IMP::Float
8551  get_value(RigidMember self, IntKey a0) -> IMP::Int
8552  get_value(RigidMember self, StringKey a0) -> IMP::String
8553  get_value(RigidMember self, ParticleIndexKey a0) -> Particle
8554  get_value(RigidMember self, ObjectKey a0) -> Object
8555  """
8556  return _IMP_core.RigidMember_get_value(self, *args)
8557 
8558 
8559  def set_value(self, *args):
8560  """
8561  set_value(RigidMember self, FloatKey a0, IMP::Float a1)
8562  set_value(RigidMember self, IntKey a0, IMP::Int a1)
8563  set_value(RigidMember self, StringKey a0, IMP::String a1)
8564  set_value(RigidMember self, ParticleIndexKey a0, Particle a1)
8565  set_value(RigidMember self, ObjectKey a0, Object a1)
8566  """
8567  return _IMP_core.RigidMember_set_value(self, *args)
8568 
8569 
8570  def remove_attribute(self, *args):
8571  """
8572  remove_attribute(RigidMember self, FloatKey a0)
8573  remove_attribute(RigidMember self, IntKey a0)
8574  remove_attribute(RigidMember self, StringKey a0)
8575  remove_attribute(RigidMember self, ParticleIndexKey a0)
8576  remove_attribute(RigidMember self, ObjectKey a0)
8577  """
8578  return _IMP_core.RigidMember_remove_attribute(self, *args)
8579 
8580 
8581  def has_attribute(self, *args):
8582  """
8583  has_attribute(RigidMember self, FloatKey a0) -> bool
8584  has_attribute(RigidMember self, IntKey a0) -> bool
8585  has_attribute(RigidMember self, StringKey a0) -> bool
8586  has_attribute(RigidMember self, ParticleIndexKey a0) -> bool
8587  has_attribute(RigidMember self, ObjectKey a0) -> bool
8588  """
8589  return _IMP_core.RigidMember_has_attribute(self, *args)
8590 
8591 
8592  def get_derivative(self, a0):
8593  """get_derivative(RigidMember self, FloatKey a0) -> double"""
8594  return _IMP_core.RigidMember_get_derivative(self, a0)
8595 
8596 
8597  def get_name(self):
8598  """get_name(RigidMember self) -> std::string"""
8599  return _IMP_core.RigidMember_get_name(self)
8600 
8601 
8602  def clear_caches(self):
8603  """clear_caches(RigidMember self)"""
8604  return _IMP_core.RigidMember_clear_caches(self)
8605 
8606 
8607  def set_name(self, a0):
8608  """set_name(RigidMember self, std::string a0)"""
8609  return _IMP_core.RigidMember_set_name(self, a0)
8610 
8611 
8612  def set_check_level(self, a0):
8613  """set_check_level(RigidMember self, IMP::CheckLevel a0)"""
8614  return _IMP_core.RigidMember_set_check_level(self, a0)
8615 
8616 
8617  def add_to_derivative(self, a0, a1, a2):
8618  """add_to_derivative(RigidMember self, FloatKey a0, double a1, DerivativeAccumulator a2)"""
8619  return _IMP_core.RigidMember_add_to_derivative(self, a0, a1, a2)
8620 
8621 
8622  def set_is_optimized(self, a0, a1):
8623  """set_is_optimized(RigidMember self, FloatKey a0, bool a1)"""
8624  return _IMP_core.RigidMember_set_is_optimized(self, a0, a1)
8625 
8626 
8627  def get_is_optimized(self, a0):
8628  """get_is_optimized(RigidMember self, FloatKey a0) -> bool"""
8629  return _IMP_core.RigidMember_get_is_optimized(self, a0)
8630 
8631 
8632  def get_check_level(self):
8633  """get_check_level(RigidMember self) -> IMP::CheckLevel"""
8634  return _IMP_core.RigidMember_get_check_level(self)
8635 
8636 
8637  def __eq__(self, *args):
8638  """
8639  __eq__(RigidMember self, RigidMember o) -> bool
8640  __eq__(RigidMember self, Particle d) -> bool
8641  """
8642  return _IMP_core.RigidMember___eq__(self, *args)
8643 
8644 
8645  def __ne__(self, *args):
8646  """
8647  __ne__(RigidMember self, RigidMember o) -> bool
8648  __ne__(RigidMember self, Particle d) -> bool
8649  """
8650  return _IMP_core.RigidMember___ne__(self, *args)
8651 
8652 
8653  def __le__(self, *args):
8654  """
8655  __le__(RigidMember self, RigidMember o) -> bool
8656  __le__(RigidMember self, Particle d) -> bool
8657  """
8658  return _IMP_core.RigidMember___le__(self, *args)
8659 
8660 
8661  def __lt__(self, *args):
8662  """
8663  __lt__(RigidMember self, RigidMember o) -> bool
8664  __lt__(RigidMember self, Particle d) -> bool
8665  """
8666  return _IMP_core.RigidMember___lt__(self, *args)
8667 
8668 
8669  def __ge__(self, *args):
8670  """
8671  __ge__(RigidMember self, RigidMember o) -> bool
8672  __ge__(RigidMember self, Particle d) -> bool
8673  """
8674  return _IMP_core.RigidMember___ge__(self, *args)
8675 
8676 
8677  def __gt__(self, *args):
8678  """
8679  __gt__(RigidMember self, RigidMember o) -> bool
8680  __gt__(RigidMember self, Particle d) -> bool
8681  """
8682  return _IMP_core.RigidMember___gt__(self, *args)
8683 
8684 
8685  def __hash__(self):
8686  """__hash__(RigidMember self) -> std::size_t"""
8687  return _IMP_core.RigidMember___hash__(self)
8688 
8689 
8690  def __str__(self):
8691  """__str__(RigidMember self) -> std::string"""
8692  return _IMP_core.RigidMember___str__(self)
8693 
8694 
8695  def __repr__(self):
8696  """__repr__(RigidMember self) -> std::string"""
8697  return _IMP_core.RigidMember___repr__(self)
8698 
8699 RigidMember_swigregister = _IMP_core.RigidMember_swigregister
8700 RigidMember_swigregister(RigidMember)
8701 
8702 def RigidMember_get_is_setup(*args):
8703  """
8704  get_is_setup(_ParticleAdaptor p) -> bool
8705  RigidMember_get_is_setup(Model m, _ParticleIndexAdaptor p) -> bool
8706  """
8707  return _IMP_core.RigidMember_get_is_setup(*args)
8708 
8709 class NonRigidMember(RigidBodyMember):
8710  """Proxy of C++ IMP::core::NonRigidMember class."""
8711 
8712  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
8713 
8714  def __init__(self, *args):
8715  """
8716  __init__(IMP::core::NonRigidMember self) -> NonRigidMember
8717  __init__(IMP::core::NonRigidMember self, Model m, ParticleIndex id) -> NonRigidMember
8718  __init__(IMP::core::NonRigidMember self, _ParticleAdaptor d) -> NonRigidMember
8719  """
8720  this = _IMP_core.new_NonRigidMember(*args)
8721  try:
8722  self.this.append(this)
8723  except __builtin__.Exception:
8724  self.this = this
8725 
8726  def show(self, *args):
8727  """
8728  show(NonRigidMember self, _ostream out)
8729  show(NonRigidMember self)
8730  """
8731  return _IMP_core.NonRigidMember_show(self, *args)
8732 
8733  __swig_destroy__ = _IMP_core.delete_NonRigidMember
8734  __del__ = lambda self: None
8735 
8736  def get_is_setup(*args):
8737  """
8738  get_is_setup(_ParticleAdaptor p) -> bool
8739  get_is_setup(Model m, ParticleIndex p) -> bool
8740  """
8741  return _IMP_core.NonRigidMember_get_is_setup(*args)
8742 
8743  get_is_setup = staticmethod(get_is_setup)
8744 
8745  def add_to_internal_derivatives(self, deriv_parent, da):
8746  """add_to_internal_derivatives(NonRigidMember self, Vector3D deriv_parent, DerivativeAccumulator da)"""
8747  return _IMP_core.NonRigidMember_add_to_internal_derivatives(self, deriv_parent, da)
8748 
8749 
8750  def add_to_internal_rotational_derivatives(self, *args):
8751  """
8752  add_to_internal_rotational_derivatives(NonRigidMember self, Vector4D local_qderiv, Rotation3D rot_local_to_parent, Rotation3D rot_parent_to_global, DerivativeAccumulator da)
8753  add_to_internal_rotational_derivatives(NonRigidMember self, Vector4D qderiv, DerivativeAccumulator da)
8754  """
8755  return _IMP_core.NonRigidMember_add_to_internal_rotational_derivatives(self, *args)
8756 
8757 
8758  def get_internal_derivatives(self):
8759  """get_internal_derivatives(NonRigidMember self) -> Vector3D"""
8760  return _IMP_core.NonRigidMember_get_internal_derivatives(self)
8761 
8762 
8763  def get_internal_rotational_derivatives(self):
8764  """get_internal_rotational_derivatives(NonRigidMember self) -> Vector4D"""
8765  return _IMP_core.NonRigidMember_get_internal_rotational_derivatives(self)
8766 
8767 
8768  def add_attribute(self, *args):
8769  """
8770  add_attribute(NonRigidMember self, FloatKey k, IMP::Float v, bool opt)
8771  add_attribute(NonRigidMember self, FloatKey a0, IMP::Float a1)
8772  add_attribute(NonRigidMember self, IntKey a0, IMP::Int a1)
8773  add_attribute(NonRigidMember self, StringKey a0, IMP::String a1)
8774  add_attribute(NonRigidMember self, ParticleIndexKey a0, Particle a1)
8775  add_attribute(NonRigidMember self, ObjectKey a0, Object a1)
8776  """
8777  return _IMP_core.NonRigidMember_add_attribute(self, *args)
8778 
8779 
8780  def get_value(self, *args):
8781  """
8782  get_value(NonRigidMember self, FloatKey a0) -> IMP::Float
8783  get_value(NonRigidMember self, IntKey a0) -> IMP::Int
8784  get_value(NonRigidMember self, StringKey a0) -> IMP::String
8785  get_value(NonRigidMember self, ParticleIndexKey a0) -> Particle
8786  get_value(NonRigidMember self, ObjectKey a0) -> Object
8787  """
8788  return _IMP_core.NonRigidMember_get_value(self, *args)
8789 
8790 
8791  def set_value(self, *args):
8792  """
8793  set_value(NonRigidMember self, FloatKey a0, IMP::Float a1)
8794  set_value(NonRigidMember self, IntKey a0, IMP::Int a1)
8795  set_value(NonRigidMember self, StringKey a0, IMP::String a1)
8796  set_value(NonRigidMember self, ParticleIndexKey a0, Particle a1)
8797  set_value(NonRigidMember self, ObjectKey a0, Object a1)
8798  """
8799  return _IMP_core.NonRigidMember_set_value(self, *args)
8800 
8801 
8802  def remove_attribute(self, *args):
8803  """
8804  remove_attribute(NonRigidMember self, FloatKey a0)
8805  remove_attribute(NonRigidMember self, IntKey a0)
8806  remove_attribute(NonRigidMember self, StringKey a0)
8807  remove_attribute(NonRigidMember self, ParticleIndexKey a0)
8808  remove_attribute(NonRigidMember self, ObjectKey a0)
8809  """
8810  return _IMP_core.NonRigidMember_remove_attribute(self, *args)
8811 
8812 
8813  def has_attribute(self, *args):
8814  """
8815  has_attribute(NonRigidMember self, FloatKey a0) -> bool
8816  has_attribute(NonRigidMember self, IntKey a0) -> bool
8817  has_attribute(NonRigidMember self, StringKey a0) -> bool
8818  has_attribute(NonRigidMember self, ParticleIndexKey a0) -> bool
8819  has_attribute(NonRigidMember self, ObjectKey a0) -> bool
8820  """
8821  return _IMP_core.NonRigidMember_has_attribute(self, *args)
8822 
8823 
8824  def get_derivative(self, a0):
8825  """get_derivative(NonRigidMember self, FloatKey a0) -> double"""
8826  return _IMP_core.NonRigidMember_get_derivative(self, a0)
8827 
8828 
8829  def get_name(self):
8830  """get_name(NonRigidMember self) -> std::string"""
8831  return _IMP_core.NonRigidMember_get_name(self)
8832 
8833 
8834  def clear_caches(self):
8835  """clear_caches(NonRigidMember self)"""
8836  return _IMP_core.NonRigidMember_clear_caches(self)
8837 
8838 
8839  def set_name(self, a0):
8840  """set_name(NonRigidMember self, std::string a0)"""
8841  return _IMP_core.NonRigidMember_set_name(self, a0)
8842 
8843 
8844  def set_check_level(self, a0):
8845  """set_check_level(NonRigidMember self, IMP::CheckLevel a0)"""
8846  return _IMP_core.NonRigidMember_set_check_level(self, a0)
8847 
8848 
8849  def add_to_derivative(self, a0, a1, a2):
8850  """add_to_derivative(NonRigidMember self, FloatKey a0, double a1, DerivativeAccumulator a2)"""
8851  return _IMP_core.NonRigidMember_add_to_derivative(self, a0, a1, a2)
8852 
8853 
8854  def set_is_optimized(self, a0, a1):
8855  """set_is_optimized(NonRigidMember self, FloatKey a0, bool a1)"""
8856  return _IMP_core.NonRigidMember_set_is_optimized(self, a0, a1)
8857 
8858 
8859  def get_is_optimized(self, a0):
8860  """get_is_optimized(NonRigidMember self, FloatKey a0) -> bool"""
8861  return _IMP_core.NonRigidMember_get_is_optimized(self, a0)
8862 
8863 
8864  def get_check_level(self):
8865  """get_check_level(NonRigidMember self) -> IMP::CheckLevel"""
8866  return _IMP_core.NonRigidMember_get_check_level(self)
8867 
8868 
8869  def __eq__(self, *args):
8870  """
8871  __eq__(NonRigidMember self, NonRigidMember o) -> bool
8872  __eq__(NonRigidMember self, Particle d) -> bool
8873  """
8874  return _IMP_core.NonRigidMember___eq__(self, *args)
8875 
8876 
8877  def __ne__(self, *args):
8878  """
8879  __ne__(NonRigidMember self, NonRigidMember o) -> bool
8880  __ne__(NonRigidMember self, Particle d) -> bool
8881  """
8882  return _IMP_core.NonRigidMember___ne__(self, *args)
8883 
8884 
8885  def __le__(self, *args):
8886  """
8887  __le__(NonRigidMember self, NonRigidMember o) -> bool
8888  __le__(NonRigidMember self, Particle d) -> bool
8889  """
8890  return _IMP_core.NonRigidMember___le__(self, *args)
8891 
8892 
8893  def __lt__(self, *args):
8894  """
8895  __lt__(NonRigidMember self, NonRigidMember o) -> bool
8896  __lt__(NonRigidMember self, Particle d) -> bool
8897  """
8898  return _IMP_core.NonRigidMember___lt__(self, *args)
8899 
8900 
8901  def __ge__(self, *args):
8902  """
8903  __ge__(NonRigidMember self, NonRigidMember o) -> bool
8904  __ge__(NonRigidMember self, Particle d) -> bool
8905  """
8906  return _IMP_core.NonRigidMember___ge__(self, *args)
8907 
8908 
8909  def __gt__(self, *args):
8910  """
8911  __gt__(NonRigidMember self, NonRigidMember o) -> bool
8912  __gt__(NonRigidMember self, Particle d) -> bool
8913  """
8914  return _IMP_core.NonRigidMember___gt__(self, *args)
8915 
8916 
8917  def __hash__(self):
8918  """__hash__(NonRigidMember self) -> std::size_t"""
8919  return _IMP_core.NonRigidMember___hash__(self)
8920 
8921 
8922  def __str__(self):
8923  """__str__(NonRigidMember self) -> std::string"""
8924  return _IMP_core.NonRigidMember___str__(self)
8925 
8926 
8927  def __repr__(self):
8928  """__repr__(NonRigidMember self) -> std::string"""
8929  return _IMP_core.NonRigidMember___repr__(self)
8930 
8931 NonRigidMember_swigregister = _IMP_core.NonRigidMember_swigregister
8932 NonRigidMember_swigregister(NonRigidMember)
8933 
8934 def NonRigidMember_get_is_setup(*args):
8935  """
8936  get_is_setup(_ParticleAdaptor p) -> bool
8937  NonRigidMember_get_is_setup(Model m, ParticleIndex p) -> bool
8938  """
8939  return _IMP_core.NonRigidMember_get_is_setup(*args)
8940 
8941 class RigidMembersRefiner(IMP.Refiner):
8942  """Proxy of C++ IMP::core::RigidMembersRefiner class."""
8943 
8944  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
8945 
8946  def __init__(self, *args):
8947  """
8948  __init__(IMP::core::RigidMembersRefiner self, std::string name) -> RigidMembersRefiner
8949  __init__(IMP::core::RigidMembersRefiner self) -> RigidMembersRefiner
8950  """
8951  this = _IMP_core.new_RigidMembersRefiner(*args)
8952  try:
8953  self.this.append(this)
8954  except __builtin__.Exception:
8955  self.this = this
8956 
8957  def do_get_inputs(self, m, pis):
8958  """do_get_inputs(RigidMembersRefiner self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
8959  return _IMP_core.RigidMembersRefiner_do_get_inputs(self, m, pis)
8960 
8961 
8962  def get_version_info(self):
8963  """get_version_info(RigidMembersRefiner self) -> VersionInfo"""
8964  return _IMP_core.RigidMembersRefiner_get_version_info(self)
8965 
8966 
8967  def __str__(self):
8968  """__str__(RigidMembersRefiner self) -> std::string"""
8969  return _IMP_core.RigidMembersRefiner___str__(self)
8970 
8971 
8972  def __repr__(self):
8973  """__repr__(RigidMembersRefiner self) -> std::string"""
8974  return _IMP_core.RigidMembersRefiner___repr__(self)
8975 
8976 
8977  @staticmethod
8978  def get_from(o):
8979  return _object_cast_to_RigidMembersRefiner(o)
8980 
8981 RigidMembersRefiner_swigregister = _IMP_core.RigidMembersRefiner_swigregister
8982 RigidMembersRefiner_swigregister(RigidMembersRefiner)
8983 
8984 
8985 def get_rigid_members_refiner():
8986  """get_rigid_members_refiner() -> RigidMembersRefiner"""
8987  return _IMP_core.get_rigid_members_refiner()
8988 
8989 def transform(*args):
8990  """
8991  transform(XYZ a, Transformation3D tr)
8992  transform(RigidBody a, Transformation3D tr)
8993  """
8994  return _IMP_core.transform(*args)
8995 
8996 def get_initial_reference_frame(*args):
8997  """
8998  get_initial_reference_frame(Model m, IMP::ParticleIndexes const & pis) -> ReferenceFrame3D
8999  get_initial_reference_frame(IMP::ParticlesTemp const & ps) -> ReferenceFrame3D
9000  """
9001  return _IMP_core.get_initial_reference_frame(*args)
9002 
9003 def create_rigid_bodies(m, n, no_members=False):
9004  """
9005  create_rigid_bodies(Model m, unsigned int n, bool no_members=False) -> IMP::ParticlesTemp
9006  create_rigid_bodies(Model m, unsigned int n) -> IMP::ParticlesTemp
9007  """
9008  return _IMP_core.create_rigid_bodies(m, n, no_members)
9009 
9010 def show_rigid_body_hierarchy(*args):
9011  """
9012  show_rigid_body_hierarchy(RigidBody rb, TextOutput out)
9013  show_rigid_body_hierarchy(RigidBody rb)
9014  """
9015  return _IMP_core.show_rigid_body_hierarchy(*args)
9016 
9017 def get_root_rigid_body(m):
9018  """get_root_rigid_body(RigidMember m) -> ParticleIndex"""
9019  return _IMP_core.get_root_rigid_body(m)
9020 class RigidBodyHierarchyGeometry(IMP.display.SingletonGeometry):
9021  """Proxy of C++ IMP::core::RigidBodyHierarchyGeometry class."""
9022 
9023  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
9024 
9025  def __init__(self, rb, constituents):
9026  """__init__(IMP::core::RigidBodyHierarchyGeometry self, RigidBody rb, IMP::ParticlesTemp const & constituents) -> RigidBodyHierarchyGeometry"""
9027  this = _IMP_core.new_RigidBodyHierarchyGeometry(rb, constituents)
9028  try:
9029  self.this.append(this)
9030  except __builtin__.Exception:
9031  self.this = this
9032 
9033  def get_version_info(self):
9034  """get_version_info(RigidBodyHierarchyGeometry self) -> VersionInfo"""
9035  return _IMP_core.RigidBodyHierarchyGeometry_get_version_info(self)
9036 
9037 
9038  def __str__(self):
9039  """__str__(RigidBodyHierarchyGeometry self) -> std::string"""
9040  return _IMP_core.RigidBodyHierarchyGeometry___str__(self)
9041 
9042 
9043  def __repr__(self):
9044  """__repr__(RigidBodyHierarchyGeometry self) -> std::string"""
9045  return _IMP_core.RigidBodyHierarchyGeometry___repr__(self)
9046 
9047 
9048  @staticmethod
9049  def get_from(o):
9050  return _object_cast_to_RigidBodyHierarchyGeometry(o)
9051 
9052 RigidBodyHierarchyGeometry_swigregister = _IMP_core.RigidBodyHierarchyGeometry_swigregister
9053 RigidBodyHierarchyGeometry_swigregister(RigidBodyHierarchyGeometry)
9054 
9055 class RigidBodyDerivativeGeometry(IMP.display.SingletonGeometry):
9056  """Proxy of C++ IMP::core::RigidBodyDerivativeGeometry class."""
9057 
9058  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
9059 
9060  def __init__(self, *args):
9061  """
9062  __init__(IMP::core::RigidBodyDerivativeGeometry self, Particle p) -> RigidBodyDerivativeGeometry
9063  __init__(IMP::core::RigidBodyDerivativeGeometry self, RigidBody d) -> RigidBodyDerivativeGeometry
9064  """
9065  this = _IMP_core.new_RigidBodyDerivativeGeometry(*args)
9066  try:
9067  self.this.append(this)
9068  except __builtin__.Exception:
9069  self.this = this
9070 
9071  def get_version_info(self):
9072  """get_version_info(RigidBodyDerivativeGeometry self) -> VersionInfo"""
9073  return _IMP_core.RigidBodyDerivativeGeometry_get_version_info(self)
9074 
9075 
9076  def __str__(self):
9077  """__str__(RigidBodyDerivativeGeometry self) -> std::string"""
9078  return _IMP_core.RigidBodyDerivativeGeometry___str__(self)
9079 
9080 
9081  def __repr__(self):
9082  """__repr__(RigidBodyDerivativeGeometry self) -> std::string"""
9083  return _IMP_core.RigidBodyDerivativeGeometry___repr__(self)
9084 
9085 
9086  @staticmethod
9087  def get_from(o):
9088  return _object_cast_to_RigidBodyDerivativeGeometry(o)
9089 
9090 RigidBodyDerivativeGeometry_swigregister = _IMP_core.RigidBodyDerivativeGeometry_swigregister
9091 RigidBodyDerivativeGeometry_swigregister(RigidBodyDerivativeGeometry)
9092 
9093 class RigidBodyDerivativesGeometry(IMP.display.SingletonsGeometry):
9094  """Proxy of C++ IMP::core::RigidBodyDerivativesGeometry class."""
9095 
9096  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
9097 
9098  def __init__(self, sc):
9099  """__init__(IMP::core::RigidBodyDerivativesGeometry self, SingletonContainer sc) -> RigidBodyDerivativesGeometry"""
9100  this = _IMP_core.new_RigidBodyDerivativesGeometry(sc)
9101  try:
9102  self.this.append(this)
9103  except __builtin__.Exception:
9104  self.this = this
9105 
9106  def get_version_info(self):
9107  """get_version_info(RigidBodyDerivativesGeometry self) -> VersionInfo"""
9108  return _IMP_core.RigidBodyDerivativesGeometry_get_version_info(self)
9109 
9110 
9111  def __str__(self):
9112  """__str__(RigidBodyDerivativesGeometry self) -> std::string"""
9113  return _IMP_core.RigidBodyDerivativesGeometry___str__(self)
9114 
9115 
9116  def __repr__(self):
9117  """__repr__(RigidBodyDerivativesGeometry self) -> std::string"""
9118  return _IMP_core.RigidBodyDerivativesGeometry___repr__(self)
9119 
9120 
9121  @staticmethod
9122  def get_from(o):
9123  return _object_cast_to_RigidBodyDerivativesGeometry(o)
9124 
9125 RigidBodyDerivativesGeometry_swigregister = _IMP_core.RigidBodyDerivativesGeometry_swigregister
9126 RigidBodyDerivativesGeometry_swigregister(RigidBodyDerivativesGeometry)
9127 
9128 class RigidBodyFrameGeometry(IMP.display.SingletonGeometry):
9129  """Proxy of C++ IMP::core::RigidBodyFrameGeometry class."""
9130 
9131  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
9132 
9133  def __init__(self, *args):
9134  """
9135  __init__(IMP::core::RigidBodyFrameGeometry self, Particle p) -> RigidBodyFrameGeometry
9136  __init__(IMP::core::RigidBodyFrameGeometry self, RigidBody d) -> RigidBodyFrameGeometry
9137  """
9138  this = _IMP_core.new_RigidBodyFrameGeometry(*args)
9139  try:
9140  self.this.append(this)
9141  except __builtin__.Exception:
9142  self.this = this
9143 
9144  def get_version_info(self):
9145  """get_version_info(RigidBodyFrameGeometry self) -> VersionInfo"""
9146  return _IMP_core.RigidBodyFrameGeometry_get_version_info(self)
9147 
9148 
9149  def __str__(self):
9150  """__str__(RigidBodyFrameGeometry self) -> std::string"""
9151  return _IMP_core.RigidBodyFrameGeometry___str__(self)
9152 
9153 
9154  def __repr__(self):
9155  """__repr__(RigidBodyFrameGeometry self) -> std::string"""
9156  return _IMP_core.RigidBodyFrameGeometry___repr__(self)
9157 
9158 
9159  @staticmethod
9160  def get_from(o):
9161  return _object_cast_to_RigidBodyFrameGeometry(o)
9162 
9163 RigidBodyFrameGeometry_swigregister = _IMP_core.RigidBodyFrameGeometry_swigregister
9164 RigidBodyFrameGeometry_swigregister(RigidBodyFrameGeometry)
9165 
9166 class RigidBodyFramesGeometry(IMP.display.SingletonsGeometry):
9167  """Proxy of C++ IMP::core::RigidBodyFramesGeometry class."""
9168 
9169  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
9170 
9171  def __init__(self, sc):
9172  """__init__(IMP::core::RigidBodyFramesGeometry self, SingletonContainer sc) -> RigidBodyFramesGeometry"""
9173  this = _IMP_core.new_RigidBodyFramesGeometry(sc)
9174  try:
9175  self.this.append(this)
9176  except __builtin__.Exception:
9177  self.this = this
9178 
9179  def get_version_info(self):
9180  """get_version_info(RigidBodyFramesGeometry self) -> VersionInfo"""
9181  return _IMP_core.RigidBodyFramesGeometry_get_version_info(self)
9182 
9183 
9184  def __str__(self):
9185  """__str__(RigidBodyFramesGeometry self) -> std::string"""
9186  return _IMP_core.RigidBodyFramesGeometry___str__(self)
9187 
9188 
9189  def __repr__(self):
9190  """__repr__(RigidBodyFramesGeometry self) -> std::string"""
9191  return _IMP_core.RigidBodyFramesGeometry___repr__(self)
9192 
9193 
9194  @staticmethod
9195  def get_from(o):
9196  return _object_cast_to_RigidBodyFramesGeometry(o)
9197 
9198 RigidBodyFramesGeometry_swigregister = _IMP_core.RigidBodyFramesGeometry_swigregister
9199 RigidBodyFramesGeometry_swigregister(RigidBodyFramesGeometry)
9200 
9201 class RigidBodyTorque(IMP.display.SegmentGeometry):
9202  """Proxy of C++ IMP::core::RigidBodyTorque class."""
9203 
9204  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
9205 
9206  def __init__(self, p):
9207  """__init__(IMP::core::RigidBodyTorque self, Particle p) -> RigidBodyTorque"""
9208  this = _IMP_core.new_RigidBodyTorque(p)
9209  try:
9210  self.this.append(this)
9211  except __builtin__.Exception:
9212  self.this = this
9213 
9214  def __str__(self):
9215  """__str__(RigidBodyTorque self) -> std::string"""
9216  return _IMP_core.RigidBodyTorque___str__(self)
9217 
9218 
9219  def __repr__(self):
9220  """__repr__(RigidBodyTorque self) -> std::string"""
9221  return _IMP_core.RigidBodyTorque___repr__(self)
9222 
9223 
9224  @staticmethod
9225  def get_from(o):
9226  return _object_cast_to_RigidBodyTorque(o)
9227 
9228  __swig_destroy__ = _IMP_core.delete_RigidBodyTorque
9229  __del__ = lambda self: None
9230 RigidBodyTorque_swigregister = _IMP_core.RigidBodyTorque_swigregister
9231 RigidBodyTorque_swigregister(RigidBodyTorque)
9232 
9233 class NearestNeighborsClosePairsFinder(ClosePairsFinder):
9234  """Proxy of C++ IMP::core::NearestNeighborsClosePairsFinder class."""
9235 
9236  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
9237 
9238  def __init__(self):
9239  """__init__(IMP::core::NearestNeighborsClosePairsFinder self) -> NearestNeighborsClosePairsFinder"""
9240  this = _IMP_core.new_NearestNeighborsClosePairsFinder()
9241  try:
9242  self.this.append(this)
9243  except __builtin__.Exception:
9244  self.this = this
9245 
9246  def get_close_pairs(self, *args):
9247  """
9248  get_close_pairs(NearestNeighborsClosePairsFinder self, IMP::algebra::BoundingBox3Ds const & bbs) -> IMP::IntPairs
9249  get_close_pairs(NearestNeighborsClosePairsFinder self, IMP::algebra::BoundingBox3Ds const & bas, IMP::algebra::BoundingBox3Ds const & bbs) -> IMP::IntPairs
9250  get_close_pairs(NearestNeighborsClosePairsFinder self, Model m, IMP::ParticleIndexes const & pc) -> IMP::ParticleIndexPairs
9251  get_close_pairs(NearestNeighborsClosePairsFinder self, Model m, IMP::ParticleIndexes const & pca, IMP::ParticleIndexes const & pcb) -> IMP::ParticleIndexPairs
9252  """
9253  return _IMP_core.NearestNeighborsClosePairsFinder_get_close_pairs(self, *args)
9254 
9255 
9256  def do_get_inputs(self, m, pis):
9257  """do_get_inputs(NearestNeighborsClosePairsFinder self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
9258  return _IMP_core.NearestNeighborsClosePairsFinder_do_get_inputs(self, m, pis)
9259 
9260 
9261  def get_version_info(self):
9262  """get_version_info(NearestNeighborsClosePairsFinder self) -> VersionInfo"""
9263  return _IMP_core.NearestNeighborsClosePairsFinder_get_version_info(self)
9264 
9265 
9266  def __str__(self):
9267  """__str__(NearestNeighborsClosePairsFinder self) -> std::string"""
9268  return _IMP_core.NearestNeighborsClosePairsFinder___str__(self)
9269 
9270 
9271  def __repr__(self):
9272  """__repr__(NearestNeighborsClosePairsFinder self) -> std::string"""
9273  return _IMP_core.NearestNeighborsClosePairsFinder___repr__(self)
9274 
9275 
9276  @staticmethod
9277  def get_from(o):
9278  return _object_cast_to_NearestNeighborsClosePairsFinder(o)
9279 
9280 NearestNeighborsClosePairsFinder_swigregister = _IMP_core.NearestNeighborsClosePairsFinder_swigregister
9281 NearestNeighborsClosePairsFinder_swigregister(NearestNeighborsClosePairsFinder)
9282 
9283 class RestraintsScoringFunction(IMP.ScoringFunction):
9284  """Proxy of C++ IMP::core::RestraintsScoringFunction class."""
9285 
9286  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
9287 
9288  def __init__(self, *args):
9289  """
9290  __init__(IMP::core::RestraintsScoringFunction self, _RestraintsAdaptor rs, double weight=1.0, double max, std::string name) -> RestraintsScoringFunction
9291  __init__(IMP::core::RestraintsScoringFunction self, _RestraintsAdaptor rs, double weight=1.0, double max) -> RestraintsScoringFunction
9292  __init__(IMP::core::RestraintsScoringFunction self, _RestraintsAdaptor rs, double weight=1.0) -> RestraintsScoringFunction
9293  __init__(IMP::core::RestraintsScoringFunction self, _RestraintsAdaptor rs) -> RestraintsScoringFunction
9294  __init__(IMP::core::RestraintsScoringFunction self, _RestraintsAdaptor rs, std::string name) -> RestraintsScoringFunction
9295  """
9296  this = _IMP_core.new_RestraintsScoringFunction(*args)
9297  try:
9298  self.this.append(this)
9299  except __builtin__.Exception:
9300  self.this = this
9301 
9302  def do_add_score_and_derivatives(self, sa, ss):
9303  """do_add_score_and_derivatives(RestraintsScoringFunction self, ScoreAccumulator sa, IMP::ScoreStatesTemp const & ss)"""
9304  return _IMP_core.RestraintsScoringFunction_do_add_score_and_derivatives(self, sa, ss)
9305 
9306 
9307  def do_get_inputs(self):
9308  """do_get_inputs(RestraintsScoringFunction self) -> IMP::ModelObjectsTemp"""
9309  return _IMP_core.RestraintsScoringFunction_do_get_inputs(self)
9310 
9311 
9312  def get_version_info(self):
9313  """get_version_info(RestraintsScoringFunction self) -> VersionInfo"""
9314  return _IMP_core.RestraintsScoringFunction_get_version_info(self)
9315 
9316 
9317  def __str__(self):
9318  """__str__(RestraintsScoringFunction self) -> std::string"""
9319  return _IMP_core.RestraintsScoringFunction___str__(self)
9320 
9321 
9322  def __repr__(self):
9323  """__repr__(RestraintsScoringFunction self) -> std::string"""
9324  return _IMP_core.RestraintsScoringFunction___repr__(self)
9325 
9326 
9327  @staticmethod
9328  def get_from(o):
9329  return _object_cast_to_RestraintsScoringFunction(o)
9330 
9331 RestraintsScoringFunction_swigregister = _IMP_core.RestraintsScoringFunction_swigregister
9332 RestraintsScoringFunction_swigregister(RestraintsScoringFunction)
9333 
9334 class RigidClosePairsFinder(ClosePairsFinder):
9335  """Proxy of C++ IMP::core::RigidClosePairsFinder class."""
9336 
9337  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
9338 
9339  def __init__(self, cpf=None):
9340  """
9341  __init__(IMP::core::RigidClosePairsFinder self, ClosePairsFinder cpf=None) -> RigidClosePairsFinder
9342  __init__(IMP::core::RigidClosePairsFinder self) -> RigidClosePairsFinder
9343  """
9344  this = _IMP_core.new_RigidClosePairsFinder(cpf)
9345  try:
9346  self.this.append(this)
9347  except __builtin__.Exception:
9348  self.this = this
9349 
9350  def do_get_inputs(self, m, pis):
9351  """do_get_inputs(RigidClosePairsFinder self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
9352  return _IMP_core.RigidClosePairsFinder_do_get_inputs(self, m, pis)
9353 
9354 
9355  def get_close_pairs(self, *args):
9356  """
9357  get_close_pairs(RigidClosePairsFinder self, Model m, ParticleIndex a, ParticleIndex b, IMP::ParticleIndexes const & pa, IMP::ParticleIndexes const & pb) -> IMP::ParticleIndexPairs
9358  get_close_pairs(RigidClosePairsFinder self, IMP::algebra::BoundingBox3Ds const & bbs) -> IMP::IntPairs
9359  get_close_pairs(RigidClosePairsFinder self, IMP::algebra::BoundingBox3Ds const & bas, IMP::algebra::BoundingBox3Ds const & bbs) -> IMP::IntPairs
9360  get_close_pairs(RigidClosePairsFinder self, Model m, IMP::ParticleIndexes const & pc) -> IMP::ParticleIndexPairs
9361  get_close_pairs(RigidClosePairsFinder self, Model m, IMP::ParticleIndexes const & pca, IMP::ParticleIndexes const & pcb) -> IMP::ParticleIndexPairs
9362  """
9363  return _IMP_core.RigidClosePairsFinder_get_close_pairs(self, *args)
9364 
9365 
9366  def get_version_info(self):
9367  """get_version_info(RigidClosePairsFinder self) -> VersionInfo"""
9368  return _IMP_core.RigidClosePairsFinder_get_version_info(self)
9369 
9370 
9371  def __str__(self):
9372  """__str__(RigidClosePairsFinder self) -> std::string"""
9373  return _IMP_core.RigidClosePairsFinder___str__(self)
9374 
9375 
9376  def __repr__(self):
9377  """__repr__(RigidClosePairsFinder self) -> std::string"""
9378  return _IMP_core.RigidClosePairsFinder___repr__(self)
9379 
9380 
9381  @staticmethod
9382  def get_from(o):
9383  return _object_cast_to_RigidClosePairsFinder(o)
9384 
9385 RigidClosePairsFinder_swigregister = _IMP_core.RigidClosePairsFinder_swigregister
9386 RigidClosePairsFinder_swigregister(RigidClosePairsFinder)
9387 
9388 class SphereDistancePairScore(IMP.PairScore):
9389  """Proxy of C++ IMP::core::SphereDistancePairScore class."""
9390 
9391  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
9392 
9393  def __init__(self, *args):
9394  """
9395  __init__(IMP::core::SphereDistancePairScore self, UnaryFunction uf, std::string name) -> SphereDistancePairScore
9396  __init__(IMP::core::SphereDistancePairScore self, UnaryFunction uf) -> SphereDistancePairScore
9397  """
9398  this = _IMP_core.new_SphereDistancePairScore(*args)
9399  try:
9400  self.this.append(this)
9401  except __builtin__.Exception:
9402  self.this = this
9403 
9404  def do_get_inputs(self, m, pis):
9405  """do_get_inputs(SphereDistancePairScore self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
9406  return _IMP_core.SphereDistancePairScore_do_get_inputs(self, m, pis)
9407 
9408 
9409  def get_version_info(self):
9410  """get_version_info(SphereDistancePairScore self) -> VersionInfo"""
9411  return _IMP_core.SphereDistancePairScore_get_version_info(self)
9412 
9413 
9414  def __str__(self):
9415  """__str__(SphereDistancePairScore self) -> std::string"""
9416  return _IMP_core.SphereDistancePairScore___str__(self)
9417 
9418 
9419  def __repr__(self):
9420  """__repr__(SphereDistancePairScore self) -> std::string"""
9421  return _IMP_core.SphereDistancePairScore___repr__(self)
9422 
9423 
9424  @staticmethod
9425  def get_from(o):
9426  return _object_cast_to_SphereDistancePairScore(o)
9427 
9428 SphereDistancePairScore_swigregister = _IMP_core.SphereDistancePairScore_swigregister
9429 SphereDistancePairScore_swigregister(SphereDistancePairScore)
9430 
9431 class HarmonicUpperBoundSphereDistancePairScore(IMP.PairScore):
9432  """Proxy of C++ IMP::core::HarmonicUpperBoundSphereDistancePairScore class."""
9433 
9434  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
9435 
9436  def __init__(self, *args):
9437  """
9438  __init__(IMP::core::HarmonicUpperBoundSphereDistancePairScore self, double x0, double k, std::string name) -> HarmonicUpperBoundSphereDistancePairScore
9439  __init__(IMP::core::HarmonicUpperBoundSphereDistancePairScore self, double x0, double k) -> HarmonicUpperBoundSphereDistancePairScore
9440  """
9441  this = _IMP_core.new_HarmonicUpperBoundSphereDistancePairScore(*args)
9442  try:
9443  self.this.append(this)
9444  except __builtin__.Exception:
9445  self.this = this
9446 
9447  def do_get_inputs(self, m, pis):
9448  """do_get_inputs(HarmonicUpperBoundSphereDistancePairScore self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
9449  return _IMP_core.HarmonicUpperBoundSphereDistancePairScore_do_get_inputs(self, m, pis)
9450 
9451 
9452  def get_version_info(self):
9453  """get_version_info(HarmonicUpperBoundSphereDistancePairScore self) -> VersionInfo"""
9454  return _IMP_core.HarmonicUpperBoundSphereDistancePairScore_get_version_info(self)
9455 
9456 
9457  def __str__(self):
9458  """__str__(HarmonicUpperBoundSphereDistancePairScore self) -> std::string"""
9459  return _IMP_core.HarmonicUpperBoundSphereDistancePairScore___str__(self)
9460 
9461 
9462  def __repr__(self):
9463  """__repr__(HarmonicUpperBoundSphereDistancePairScore self) -> std::string"""
9464  return _IMP_core.HarmonicUpperBoundSphereDistancePairScore___repr__(self)
9465 
9466 
9467  @staticmethod
9468  def get_from(o):
9469  return _object_cast_to_HarmonicUpperBoundSphereDistancePairScore(o)
9470 
9471 HarmonicUpperBoundSphereDistancePairScore_swigregister = _IMP_core.HarmonicUpperBoundSphereDistancePairScore_swigregister
9472 HarmonicUpperBoundSphereDistancePairScore_swigregister(HarmonicUpperBoundSphereDistancePairScore)
9473 
9474 class HarmonicUpperBoundSphereDiameterPairScore(IMP.PairScore):
9475  """Proxy of C++ IMP::core::HarmonicUpperBoundSphereDiameterPairScore class."""
9476 
9477  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
9478 
9479  def __init__(self, d0, k):
9480  """__init__(IMP::core::HarmonicUpperBoundSphereDiameterPairScore self, double d0, double k) -> HarmonicUpperBoundSphereDiameterPairScore"""
9481  this = _IMP_core.new_HarmonicUpperBoundSphereDiameterPairScore(d0, k)
9482  try:
9483  self.this.append(this)
9484  except __builtin__.Exception:
9485  self.this = this
9486 
9487  def get_rest_length(self):
9488  """get_rest_length(HarmonicUpperBoundSphereDiameterPairScore self) -> double"""
9489  return _IMP_core.HarmonicUpperBoundSphereDiameterPairScore_get_rest_length(self)
9490 
9491 
9492  def get_stiffness(self):
9493  """get_stiffness(HarmonicUpperBoundSphereDiameterPairScore self) -> double"""
9494  return _IMP_core.HarmonicUpperBoundSphereDiameterPairScore_get_stiffness(self)
9495 
9496 
9497  def do_get_inputs(self, m, pis):
9498  """do_get_inputs(HarmonicUpperBoundSphereDiameterPairScore self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
9499  return _IMP_core.HarmonicUpperBoundSphereDiameterPairScore_do_get_inputs(self, m, pis)
9500 
9501 
9502  def get_version_info(self):
9503  """get_version_info(HarmonicUpperBoundSphereDiameterPairScore self) -> VersionInfo"""
9504  return _IMP_core.HarmonicUpperBoundSphereDiameterPairScore_get_version_info(self)
9505 
9506 
9507  def __str__(self):
9508  """__str__(HarmonicUpperBoundSphereDiameterPairScore self) -> std::string"""
9509  return _IMP_core.HarmonicUpperBoundSphereDiameterPairScore___str__(self)
9510 
9511 
9512  def __repr__(self):
9513  """__repr__(HarmonicUpperBoundSphereDiameterPairScore self) -> std::string"""
9514  return _IMP_core.HarmonicUpperBoundSphereDiameterPairScore___repr__(self)
9515 
9516 
9517  @staticmethod
9518  def get_from(o):
9519  return _object_cast_to_HarmonicUpperBoundSphereDiameterPairScore(o)
9520 
9521 HarmonicUpperBoundSphereDiameterPairScore_swigregister = _IMP_core.HarmonicUpperBoundSphereDiameterPairScore_swigregister
9522 HarmonicUpperBoundSphereDiameterPairScore_swigregister(HarmonicUpperBoundSphereDiameterPairScore)
9523 
9524 class HarmonicSphereDistancePairScore(IMP.PairScore):
9525  """Proxy of C++ IMP::core::HarmonicSphereDistancePairScore class."""
9526 
9527  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
9528 
9529  def __init__(self, *args):
9530  """
9531  __init__(IMP::core::HarmonicSphereDistancePairScore self, double x0, double k, std::string name) -> HarmonicSphereDistancePairScore
9532  __init__(IMP::core::HarmonicSphereDistancePairScore self, double x0, double k) -> HarmonicSphereDistancePairScore
9533  """
9534  this = _IMP_core.new_HarmonicSphereDistancePairScore(*args)
9535  try:
9536  self.this.append(this)
9537  except __builtin__.Exception:
9538  self.this = this
9539 
9540  def do_get_inputs(self, m, pis):
9541  """do_get_inputs(HarmonicSphereDistancePairScore self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
9542  return _IMP_core.HarmonicSphereDistancePairScore_do_get_inputs(self, m, pis)
9543 
9544 
9545  def get_version_info(self):
9546  """get_version_info(HarmonicSphereDistancePairScore self) -> VersionInfo"""
9547  return _IMP_core.HarmonicSphereDistancePairScore_get_version_info(self)
9548 
9549 
9550  def __str__(self):
9551  """__str__(HarmonicSphereDistancePairScore self) -> std::string"""
9552  return _IMP_core.HarmonicSphereDistancePairScore___str__(self)
9553 
9554 
9555  def __repr__(self):
9556  """__repr__(HarmonicSphereDistancePairScore self) -> std::string"""
9557  return _IMP_core.HarmonicSphereDistancePairScore___repr__(self)
9558 
9559 
9560  @staticmethod
9561  def get_from(o):
9562  return _object_cast_to_HarmonicSphereDistancePairScore(o)
9563 
9564 HarmonicSphereDistancePairScore_swigregister = _IMP_core.HarmonicSphereDistancePairScore_swigregister
9565 HarmonicSphereDistancePairScore_swigregister(HarmonicSphereDistancePairScore)
9566 
9567 class NormalizedSphereDistancePairScore(IMP.PairScore):
9568  """Proxy of C++ IMP::core::NormalizedSphereDistancePairScore class."""
9569 
9570  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
9571 
9572  def __init__(self, *args):
9573  """
9574  __init__(IMP::core::NormalizedSphereDistancePairScore self, UnaryFunction f, FloatKey radius) -> NormalizedSphereDistancePairScore
9575  __init__(IMP::core::NormalizedSphereDistancePairScore self, UnaryFunction f) -> NormalizedSphereDistancePairScore
9576  """
9577  this = _IMP_core.new_NormalizedSphereDistancePairScore(*args)
9578  try:
9579  self.this.append(this)
9580  except __builtin__.Exception:
9581  self.this = this
9582 
9583  def do_get_inputs(self, m, pis):
9584  """do_get_inputs(NormalizedSphereDistancePairScore self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
9585  return _IMP_core.NormalizedSphereDistancePairScore_do_get_inputs(self, m, pis)
9586 
9587 
9588  def get_version_info(self):
9589  """get_version_info(NormalizedSphereDistancePairScore self) -> VersionInfo"""
9590  return _IMP_core.NormalizedSphereDistancePairScore_get_version_info(self)
9591 
9592 
9593  def __str__(self):
9594  """__str__(NormalizedSphereDistancePairScore self) -> std::string"""
9595  return _IMP_core.NormalizedSphereDistancePairScore___str__(self)
9596 
9597 
9598  def __repr__(self):
9599  """__repr__(NormalizedSphereDistancePairScore self) -> std::string"""
9600  return _IMP_core.NormalizedSphereDistancePairScore___repr__(self)
9601 
9602 
9603  @staticmethod
9604  def get_from(o):
9605  return _object_cast_to_NormalizedSphereDistancePairScore(o)
9606 
9607 NormalizedSphereDistancePairScore_swigregister = _IMP_core.NormalizedSphereDistancePairScore_swigregister
9608 NormalizedSphereDistancePairScore_swigregister(NormalizedSphereDistancePairScore)
9609 
9610 class WeightedSphereDistancePairScore(IMP.PairScore):
9611  """Proxy of C++ IMP::core::WeightedSphereDistancePairScore class."""
9612 
9613  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
9614 
9615  def __init__(self, *args):
9616  """
9617  __init__(IMP::core::WeightedSphereDistancePairScore self, UnaryFunction f, FloatKey weight, FloatKey radius) -> WeightedSphereDistancePairScore
9618  __init__(IMP::core::WeightedSphereDistancePairScore self, UnaryFunction f, FloatKey weight) -> WeightedSphereDistancePairScore
9619  """
9620  this = _IMP_core.new_WeightedSphereDistancePairScore(*args)
9621  try:
9622  self.this.append(this)
9623  except __builtin__.Exception:
9624  self.this = this
9625 
9626  def do_get_inputs(self, m, pis):
9627  """do_get_inputs(WeightedSphereDistancePairScore self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
9628  return _IMP_core.WeightedSphereDistancePairScore_do_get_inputs(self, m, pis)
9629 
9630 
9631  def get_version_info(self):
9632  """get_version_info(WeightedSphereDistancePairScore self) -> VersionInfo"""
9633  return _IMP_core.WeightedSphereDistancePairScore_get_version_info(self)
9634 
9635 
9636  def __str__(self):
9637  """__str__(WeightedSphereDistancePairScore self) -> std::string"""
9638  return _IMP_core.WeightedSphereDistancePairScore___str__(self)
9639 
9640 
9641  def __repr__(self):
9642  """__repr__(WeightedSphereDistancePairScore self) -> std::string"""
9643  return _IMP_core.WeightedSphereDistancePairScore___repr__(self)
9644 
9645 
9646  @staticmethod
9647  def get_from(o):
9648  return _object_cast_to_WeightedSphereDistancePairScore(o)
9649 
9650 WeightedSphereDistancePairScore_swigregister = _IMP_core.WeightedSphereDistancePairScore_swigregister
9651 WeightedSphereDistancePairScore_swigregister(WeightedSphereDistancePairScore)
9652 
9653 class SoftSpherePairScore(IMP.PairScore):
9654  """Proxy of C++ IMP::core::SoftSpherePairScore class."""
9655 
9656  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
9657 
9658  def __init__(self, *args):
9659  """
9660  __init__(IMP::core::SoftSpherePairScore self, double k, std::string name) -> SoftSpherePairScore
9661  __init__(IMP::core::SoftSpherePairScore self, double k) -> SoftSpherePairScore
9662  """
9663  this = _IMP_core.new_SoftSpherePairScore(*args)
9664  try:
9665  self.this.append(this)
9666  except __builtin__.Exception:
9667  self.this = this
9668 
9669  def do_get_inputs(self, m, pis):
9670  """do_get_inputs(SoftSpherePairScore self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
9671  return _IMP_core.SoftSpherePairScore_do_get_inputs(self, m, pis)
9672 
9673 
9674  def get_version_info(self):
9675  """get_version_info(SoftSpherePairScore self) -> VersionInfo"""
9676  return _IMP_core.SoftSpherePairScore_get_version_info(self)
9677 
9678 
9679  def __str__(self):
9680  """__str__(SoftSpherePairScore self) -> std::string"""
9681  return _IMP_core.SoftSpherePairScore___str__(self)
9682 
9683 
9684  def __repr__(self):
9685  """__repr__(SoftSpherePairScore self) -> std::string"""
9686  return _IMP_core.SoftSpherePairScore___repr__(self)
9687 
9688 
9689  @staticmethod
9690  def get_from(o):
9691  return _object_cast_to_SoftSpherePairScore(o)
9692 
9693 SoftSpherePairScore_swigregister = _IMP_core.SoftSpherePairScore_swigregister
9694 SoftSpherePairScore_swigregister(SoftSpherePairScore)
9695 
9696 class SurfaceDistancePairScore(IMP.PairScore):
9697  """Proxy of C++ IMP::core::SurfaceDistancePairScore class."""
9698 
9699  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
9700 
9701  def __init__(self, *args):
9702  """
9703  __init__(IMP::core::SurfaceDistancePairScore self, UnaryFunction uf, std::string name) -> SurfaceDistancePairScore
9704  __init__(IMP::core::SurfaceDistancePairScore self, UnaryFunction uf) -> SurfaceDistancePairScore
9705  """
9706  this = _IMP_core.new_SurfaceDistancePairScore(*args)
9707  try:
9708  self.this.append(this)
9709  except __builtin__.Exception:
9710  self.this = this
9711 
9712  def do_get_inputs(self, m, pis):
9713  """do_get_inputs(SurfaceDistancePairScore self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
9714  return _IMP_core.SurfaceDistancePairScore_do_get_inputs(self, m, pis)
9715 
9716 
9717  def get_version_info(self):
9718  """get_version_info(SurfaceDistancePairScore self) -> VersionInfo"""
9719  return _IMP_core.SurfaceDistancePairScore_get_version_info(self)
9720 
9721 
9722  def __str__(self):
9723  """__str__(SurfaceDistancePairScore self) -> std::string"""
9724  return _IMP_core.SurfaceDistancePairScore___str__(self)
9725 
9726 
9727  def __repr__(self):
9728  """__repr__(SurfaceDistancePairScore self) -> std::string"""
9729  return _IMP_core.SurfaceDistancePairScore___repr__(self)
9730 
9731 
9732  @staticmethod
9733  def get_from(o):
9734  return _object_cast_to_SurfaceDistancePairScore(o)
9735 
9736 SurfaceDistancePairScore_swigregister = _IMP_core.SurfaceDistancePairScore_swigregister
9737 SurfaceDistancePairScore_swigregister(SurfaceDistancePairScore)
9738 
9739 class SurfaceHeightPairScore(IMP.PairScore):
9740  """Proxy of C++ IMP::core::SurfaceHeightPairScore class."""
9741 
9742  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
9743 
9744  def __init__(self, *args):
9745  """
9746  __init__(IMP::core::SurfaceHeightPairScore self, UnaryFunction uf, std::string name) -> SurfaceHeightPairScore
9747  __init__(IMP::core::SurfaceHeightPairScore self, UnaryFunction uf) -> SurfaceHeightPairScore
9748  """
9749  this = _IMP_core.new_SurfaceHeightPairScore(*args)
9750  try:
9751  self.this.append(this)
9752  except __builtin__.Exception:
9753  self.this = this
9754 
9755  def do_get_inputs(self, m, pis):
9756  """do_get_inputs(SurfaceHeightPairScore self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
9757  return _IMP_core.SurfaceHeightPairScore_do_get_inputs(self, m, pis)
9758 
9759 
9760  def get_version_info(self):
9761  """get_version_info(SurfaceHeightPairScore self) -> VersionInfo"""
9762  return _IMP_core.SurfaceHeightPairScore_get_version_info(self)
9763 
9764 
9765  def __str__(self):
9766  """__str__(SurfaceHeightPairScore self) -> std::string"""
9767  return _IMP_core.SurfaceHeightPairScore___str__(self)
9768 
9769 
9770  def __repr__(self):
9771  """__repr__(SurfaceHeightPairScore self) -> std::string"""
9772  return _IMP_core.SurfaceHeightPairScore___repr__(self)
9773 
9774 
9775  @staticmethod
9776  def get_from(o):
9777  return _object_cast_to_SurfaceHeightPairScore(o)
9778 
9779 SurfaceHeightPairScore_swigregister = _IMP_core.SurfaceHeightPairScore_swigregister
9780 SurfaceHeightPairScore_swigregister(SurfaceHeightPairScore)
9781 
9782 class SurfaceDepthPairScore(IMP.PairScore):
9783  """Proxy of C++ IMP::core::SurfaceDepthPairScore class."""
9784 
9785  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
9786 
9787  def __init__(self, *args):
9788  """
9789  __init__(IMP::core::SurfaceDepthPairScore self, UnaryFunction uf, std::string name) -> SurfaceDepthPairScore
9790  __init__(IMP::core::SurfaceDepthPairScore self, UnaryFunction uf) -> SurfaceDepthPairScore
9791  """
9792  this = _IMP_core.new_SurfaceDepthPairScore(*args)
9793  try:
9794  self.this.append(this)
9795  except __builtin__.Exception:
9796  self.this = this
9797 
9798  def do_get_inputs(self, m, pis):
9799  """do_get_inputs(SurfaceDepthPairScore self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
9800  return _IMP_core.SurfaceDepthPairScore_do_get_inputs(self, m, pis)
9801 
9802 
9803  def get_version_info(self):
9804  """get_version_info(SurfaceDepthPairScore self) -> VersionInfo"""
9805  return _IMP_core.SurfaceDepthPairScore_get_version_info(self)
9806 
9807 
9808  def __str__(self):
9809  """__str__(SurfaceDepthPairScore self) -> std::string"""
9810  return _IMP_core.SurfaceDepthPairScore___str__(self)
9811 
9812 
9813  def __repr__(self):
9814  """__repr__(SurfaceDepthPairScore self) -> std::string"""
9815  return _IMP_core.SurfaceDepthPairScore___repr__(self)
9816 
9817 
9818  @staticmethod
9819  def get_from(o):
9820  return _object_cast_to_SurfaceDepthPairScore(o)
9821 
9822 SurfaceDepthPairScore_swigregister = _IMP_core.SurfaceDepthPairScore_swigregister
9823 SurfaceDepthPairScore_swigregister(SurfaceDepthPairScore)
9824 
9825 class HarmonicSurfaceDistancePairScore(IMP.PairScore):
9826  """Proxy of C++ IMP::core::HarmonicSurfaceDistancePairScore class."""
9827 
9828  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
9829 
9830  def __init__(self, *args):
9831  """
9832  __init__(IMP::core::HarmonicSurfaceDistancePairScore self, double x0, double k, std::string name) -> HarmonicSurfaceDistancePairScore
9833  __init__(IMP::core::HarmonicSurfaceDistancePairScore self, double x0, double k) -> HarmonicSurfaceDistancePairScore
9834  """
9835  this = _IMP_core.new_HarmonicSurfaceDistancePairScore(*args)
9836  try:
9837  self.this.append(this)
9838  except __builtin__.Exception:
9839  self.this = this
9840 
9841  def do_get_inputs(self, m, pis):
9842  """do_get_inputs(HarmonicSurfaceDistancePairScore self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
9843  return _IMP_core.HarmonicSurfaceDistancePairScore_do_get_inputs(self, m, pis)
9844 
9845 
9846  def get_version_info(self):
9847  """get_version_info(HarmonicSurfaceDistancePairScore self) -> VersionInfo"""
9848  return _IMP_core.HarmonicSurfaceDistancePairScore_get_version_info(self)
9849 
9850 
9851  def __str__(self):
9852  """__str__(HarmonicSurfaceDistancePairScore self) -> std::string"""
9853  return _IMP_core.HarmonicSurfaceDistancePairScore___str__(self)
9854 
9855 
9856  def __repr__(self):
9857  """__repr__(HarmonicSurfaceDistancePairScore self) -> std::string"""
9858  return _IMP_core.HarmonicSurfaceDistancePairScore___repr__(self)
9859 
9860 
9861  @staticmethod
9862  def get_from(o):
9863  return _object_cast_to_HarmonicSurfaceDistancePairScore(o)
9864 
9865 HarmonicSurfaceDistancePairScore_swigregister = _IMP_core.HarmonicSurfaceDistancePairScore_swigregister
9866 HarmonicSurfaceDistancePairScore_swigregister(HarmonicSurfaceDistancePairScore)
9867 
9868 class HarmonicSurfaceHeightPairScore(IMP.PairScore):
9869  """Proxy of C++ IMP::core::HarmonicSurfaceHeightPairScore class."""
9870 
9871  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
9872 
9873  def __init__(self, *args):
9874  """
9875  __init__(IMP::core::HarmonicSurfaceHeightPairScore self, double x0, double k, std::string name) -> HarmonicSurfaceHeightPairScore
9876  __init__(IMP::core::HarmonicSurfaceHeightPairScore self, double x0, double k) -> HarmonicSurfaceHeightPairScore
9877  """
9878  this = _IMP_core.new_HarmonicSurfaceHeightPairScore(*args)
9879  try:
9880  self.this.append(this)
9881  except __builtin__.Exception:
9882  self.this = this
9883 
9884  def do_get_inputs(self, m, pis):
9885  """do_get_inputs(HarmonicSurfaceHeightPairScore self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
9886  return _IMP_core.HarmonicSurfaceHeightPairScore_do_get_inputs(self, m, pis)
9887 
9888 
9889  def get_version_info(self):
9890  """get_version_info(HarmonicSurfaceHeightPairScore self) -> VersionInfo"""
9891  return _IMP_core.HarmonicSurfaceHeightPairScore_get_version_info(self)
9892 
9893 
9894  def __str__(self):
9895  """__str__(HarmonicSurfaceHeightPairScore self) -> std::string"""
9896  return _IMP_core.HarmonicSurfaceHeightPairScore___str__(self)
9897 
9898 
9899  def __repr__(self):
9900  """__repr__(HarmonicSurfaceHeightPairScore self) -> std::string"""
9901  return _IMP_core.HarmonicSurfaceHeightPairScore___repr__(self)
9902 
9903 
9904  @staticmethod
9905  def get_from(o):
9906  return _object_cast_to_HarmonicSurfaceHeightPairScore(o)
9907 
9908 HarmonicSurfaceHeightPairScore_swigregister = _IMP_core.HarmonicSurfaceHeightPairScore_swigregister
9909 HarmonicSurfaceHeightPairScore_swigregister(HarmonicSurfaceHeightPairScore)
9910 
9911 class HarmonicSurfaceDepthPairScore(IMP.PairScore):
9912  """Proxy of C++ IMP::core::HarmonicSurfaceDepthPairScore class."""
9913 
9914  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
9915 
9916  def __init__(self, *args):
9917  """
9918  __init__(IMP::core::HarmonicSurfaceDepthPairScore self, double x0, double k, std::string name) -> HarmonicSurfaceDepthPairScore
9919  __init__(IMP::core::HarmonicSurfaceDepthPairScore self, double x0, double k) -> HarmonicSurfaceDepthPairScore
9920  """
9921  this = _IMP_core.new_HarmonicSurfaceDepthPairScore(*args)
9922  try:
9923  self.this.append(this)
9924  except __builtin__.Exception:
9925  self.this = this
9926 
9927  def do_get_inputs(self, m, pis):
9928  """do_get_inputs(HarmonicSurfaceDepthPairScore self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
9929  return _IMP_core.HarmonicSurfaceDepthPairScore_do_get_inputs(self, m, pis)
9930 
9931 
9932  def get_version_info(self):
9933  """get_version_info(HarmonicSurfaceDepthPairScore self) -> VersionInfo"""
9934  return _IMP_core.HarmonicSurfaceDepthPairScore_get_version_info(self)
9935 
9936 
9937  def __str__(self):
9938  """__str__(HarmonicSurfaceDepthPairScore self) -> std::string"""
9939  return _IMP_core.HarmonicSurfaceDepthPairScore___str__(self)
9940 
9941 
9942  def __repr__(self):
9943  """__repr__(HarmonicSurfaceDepthPairScore self) -> std::string"""
9944  return _IMP_core.HarmonicSurfaceDepthPairScore___repr__(self)
9945 
9946 
9947  @staticmethod
9948  def get_from(o):
9949  return _object_cast_to_HarmonicSurfaceDepthPairScore(o)
9950 
9951 HarmonicSurfaceDepthPairScore_swigregister = _IMP_core.HarmonicSurfaceDepthPairScore_swigregister
9952 HarmonicSurfaceDepthPairScore_swigregister(HarmonicSurfaceDepthPairScore)
9953 
9954 class SoftSuperSurfacePairScore(IMP.PairScore):
9955  """Proxy of C++ IMP::core::SoftSuperSurfacePairScore class."""
9956 
9957  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
9958 
9959  def __init__(self, *args):
9960  """
9961  __init__(IMP::core::SoftSuperSurfacePairScore self, double k, std::string name) -> SoftSuperSurfacePairScore
9962  __init__(IMP::core::SoftSuperSurfacePairScore self, double k) -> SoftSuperSurfacePairScore
9963  """
9964  this = _IMP_core.new_SoftSuperSurfacePairScore(*args)
9965  try:
9966  self.this.append(this)
9967  except __builtin__.Exception:
9968  self.this = this
9969 
9970  def do_get_inputs(self, m, pis):
9971  """do_get_inputs(SoftSuperSurfacePairScore self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
9972  return _IMP_core.SoftSuperSurfacePairScore_do_get_inputs(self, m, pis)
9973 
9974 
9975  def get_version_info(self):
9976  """get_version_info(SoftSuperSurfacePairScore self) -> VersionInfo"""
9977  return _IMP_core.SoftSuperSurfacePairScore_get_version_info(self)
9978 
9979 
9980  def __str__(self):
9981  """__str__(SoftSuperSurfacePairScore self) -> std::string"""
9982  return _IMP_core.SoftSuperSurfacePairScore___str__(self)
9983 
9984 
9985  def __repr__(self):
9986  """__repr__(SoftSuperSurfacePairScore self) -> std::string"""
9987  return _IMP_core.SoftSuperSurfacePairScore___repr__(self)
9988 
9989 
9990  @staticmethod
9991  def get_from(o):
9992  return _object_cast_to_SoftSuperSurfacePairScore(o)
9993 
9994 SoftSuperSurfacePairScore_swigregister = _IMP_core.SoftSuperSurfacePairScore_swigregister
9995 SoftSuperSurfacePairScore_swigregister(SoftSuperSurfacePairScore)
9996 
9997 class SoftSubSurfacePairScore(IMP.PairScore):
9998  """Proxy of C++ IMP::core::SoftSubSurfacePairScore class."""
9999 
10000  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
10001 
10002  def __init__(self, *args):
10003  """
10004  __init__(IMP::core::SoftSubSurfacePairScore self, double k, std::string name) -> SoftSubSurfacePairScore
10005  __init__(IMP::core::SoftSubSurfacePairScore self, double k) -> SoftSubSurfacePairScore
10006  """
10007  this = _IMP_core.new_SoftSubSurfacePairScore(*args)
10008  try:
10009  self.this.append(this)
10010  except __builtin__.Exception:
10011  self.this = this
10012 
10013  def do_get_inputs(self, m, pis):
10014  """do_get_inputs(SoftSubSurfacePairScore self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
10015  return _IMP_core.SoftSubSurfacePairScore_do_get_inputs(self, m, pis)
10016 
10017 
10018  def get_version_info(self):
10019  """get_version_info(SoftSubSurfacePairScore self) -> VersionInfo"""
10020  return _IMP_core.SoftSubSurfacePairScore_get_version_info(self)
10021 
10022 
10023  def __str__(self):
10024  """__str__(SoftSubSurfacePairScore self) -> std::string"""
10025  return _IMP_core.SoftSubSurfacePairScore___str__(self)
10026 
10027 
10028  def __repr__(self):
10029  """__repr__(SoftSubSurfacePairScore self) -> std::string"""
10030  return _IMP_core.SoftSubSurfacePairScore___repr__(self)
10031 
10032 
10033  @staticmethod
10034  def get_from(o):
10035  return _object_cast_to_SoftSubSurfacePairScore(o)
10036 
10037 SoftSubSurfacePairScore_swigregister = _IMP_core.SoftSubSurfacePairScore_swigregister
10038 SoftSubSurfacePairScore_swigregister(SoftSubSurfacePairScore)
10039 
10040 class SurfaceTetheredChain(IMP.UnaryFunction):
10041  """Proxy of C++ IMP::core::SurfaceTetheredChain class."""
10042 
10043  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
10044 
10045  def __init__(self, link_num, link_length):
10046  """__init__(IMP::core::SurfaceTetheredChain self, int link_num, double link_length) -> SurfaceTetheredChain"""
10047  this = _IMP_core.new_SurfaceTetheredChain(link_num, link_length)
10048  try:
10049  self.this.append(this)
10050  except __builtin__.Exception:
10051  self.this = this
10052 
10053  def get_version_info(self):
10054  """get_version_info(SurfaceTetheredChain self) -> VersionInfo"""
10055  return _IMP_core.SurfaceTetheredChain_get_version_info(self)
10056 
10057 
10058  def get_link_number(self):
10059  """get_link_number(SurfaceTetheredChain self) -> int"""
10060  return _IMP_core.SurfaceTetheredChain_get_link_number(self)
10061 
10062 
10063  def get_link_length(self):
10064  """get_link_length(SurfaceTetheredChain self) -> double"""
10065  return _IMP_core.SurfaceTetheredChain_get_link_length(self)
10066 
10067 
10068  def set_link_number(self, N):
10069  """set_link_number(SurfaceTetheredChain self, int N)"""
10070  return _IMP_core.SurfaceTetheredChain_set_link_number(self, N)
10071 
10072 
10073  def set_link_length(self, b):
10074  """set_link_length(SurfaceTetheredChain self, double b)"""
10075  return _IMP_core.SurfaceTetheredChain_set_link_length(self, b)
10076 
10077 
10078  def get_distance_at_minimum(self):
10079  """get_distance_at_minimum(SurfaceTetheredChain self) -> double"""
10080  return _IMP_core.SurfaceTetheredChain_get_distance_at_minimum(self)
10081 
10082 
10083  def get_average_distance(self):
10084  """get_average_distance(SurfaceTetheredChain self) -> double"""
10085  return _IMP_core.SurfaceTetheredChain_get_average_distance(self)
10086 
10087 
10088  def __str__(self):
10089  """__str__(SurfaceTetheredChain self) -> std::string"""
10090  return _IMP_core.SurfaceTetheredChain___str__(self)
10091 
10092 
10093  def __repr__(self):
10094  """__repr__(SurfaceTetheredChain self) -> std::string"""
10095  return _IMP_core.SurfaceTetheredChain___repr__(self)
10096 
10097 
10098  @staticmethod
10099  def get_from(o):
10100  return _object_cast_to_SurfaceTetheredChain(o)
10101 
10102 SurfaceTetheredChain_swigregister = _IMP_core.SurfaceTetheredChain_swigregister
10103 SurfaceTetheredChain_swigregister(SurfaceTetheredChain)
10104 
10105 class SurfaceSymmetryConstraint(IMP.Constraint):
10106  """Proxy of C++ IMP::core::SurfaceSymmetryConstraint class."""
10107 
10108  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
10109 
10110  def __init__(self, m, ss, rbs):
10111  """__init__(IMP::core::SurfaceSymmetryConstraint self, Model m, IMP::ParticleIndexPair const & ss, IMP::ParticleIndexPair const & rbs) -> SurfaceSymmetryConstraint"""
10112  this = _IMP_core.new_SurfaceSymmetryConstraint(m, ss, rbs)
10113  try:
10114  self.this.append(this)
10115  except __builtin__.Exception:
10116  self.this = this
10117 
10118  def do_get_inputs(self):
10119  """do_get_inputs(SurfaceSymmetryConstraint self) -> IMP::ModelObjectsTemp"""
10120  return _IMP_core.SurfaceSymmetryConstraint_do_get_inputs(self)
10121 
10122 
10123  def do_get_outputs(self):
10124  """do_get_outputs(SurfaceSymmetryConstraint self) -> IMP::ModelObjectsTemp"""
10125  return _IMP_core.SurfaceSymmetryConstraint_do_get_outputs(self)
10126 
10127 
10128  def get_version_info(self):
10129  """get_version_info(SurfaceSymmetryConstraint self) -> VersionInfo"""
10130  return _IMP_core.SurfaceSymmetryConstraint_get_version_info(self)
10131 
10132 
10133  def __str__(self):
10134  """__str__(SurfaceSymmetryConstraint self) -> std::string"""
10135  return _IMP_core.SurfaceSymmetryConstraint___str__(self)
10136 
10137 
10138  def __repr__(self):
10139  """__repr__(SurfaceSymmetryConstraint self) -> std::string"""
10140  return _IMP_core.SurfaceSymmetryConstraint___repr__(self)
10141 
10142 
10143  @staticmethod
10144  def get_from(o):
10145  return _object_cast_to_SurfaceSymmetryConstraint(o)
10146 
10147 SurfaceSymmetryConstraint_swigregister = _IMP_core.SurfaceSymmetryConstraint_swigregister
10148 SurfaceSymmetryConstraint_swigregister(SurfaceSymmetryConstraint)
10149 
10150 class SteepestDescent(IMP.AttributeOptimizer):
10151  """Proxy of C++ IMP::core::SteepestDescent class."""
10152 
10153  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
10154 
10155  def __init__(self, *args):
10156  """
10157  __init__(IMP::core::SteepestDescent self, Model m, std::string name) -> SteepestDescent
10158  __init__(IMP::core::SteepestDescent self, Model m) -> SteepestDescent
10159  """
10160  this = _IMP_core.new_SteepestDescent(*args)
10161  try:
10162  self.this.append(this)
10163  except __builtin__.Exception:
10164  self.this = this
10165 
10166  def do_optimize(self, max_steps):
10167  """do_optimize(SteepestDescent self, unsigned int max_steps) -> IMP::Float"""
10168  return _IMP_core.SteepestDescent_do_optimize(self, max_steps)
10169 
10170 
10171  def get_version_info(self):
10172  """get_version_info(SteepestDescent self) -> VersionInfo"""
10173  return _IMP_core.SteepestDescent_get_version_info(self)
10174 
10175 
10176  def set_threshold(self, t):
10177  """set_threshold(SteepestDescent self, IMP::Float t)"""
10178  return _IMP_core.SteepestDescent_set_threshold(self, t)
10179 
10180 
10181  def set_step_size(self, t):
10182  """set_step_size(SteepestDescent self, IMP::Float t)"""
10183  return _IMP_core.SteepestDescent_set_step_size(self, t)
10184 
10185 
10186  def set_maximum_step_size(self, t):
10187  """set_maximum_step_size(SteepestDescent self, IMP::Float t)"""
10188  return _IMP_core.SteepestDescent_set_maximum_step_size(self, t)
10189 
10190 
10191  def __str__(self):
10192  """__str__(SteepestDescent self) -> std::string"""
10193  return _IMP_core.SteepestDescent___str__(self)
10194 
10195 
10196  def __repr__(self):
10197  """__repr__(SteepestDescent self) -> std::string"""
10198  return _IMP_core.SteepestDescent___repr__(self)
10199 
10200 
10201  @staticmethod
10202  def get_from(o):
10203  return _object_cast_to_SteepestDescent(o)
10204 
10205 SteepestDescent_swigregister = _IMP_core.SteepestDescent_swigregister
10206 SteepestDescent_swigregister(SteepestDescent)
10207 
10208 class TransformedDistancePairScore(IMP.PairScore):
10209  """Proxy of C++ IMP::core::TransformedDistancePairScore class."""
10210 
10211  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
10212 
10213  def __init__(self, f, transformation):
10214  """__init__(IMP::core::TransformedDistancePairScore self, UnaryFunction f, Transformation3D transformation) -> TransformedDistancePairScore"""
10215  this = _IMP_core.new_TransformedDistancePairScore(f, transformation)
10216  try:
10217  self.this.append(this)
10218  except __builtin__.Exception:
10219  self.this = this
10220 
10221  def set_transformation(self, rot):
10222  """set_transformation(TransformedDistancePairScore self, Transformation3D rot)"""
10223  return _IMP_core.TransformedDistancePairScore_set_transformation(self, rot)
10224 
10225 
10226  def do_get_inputs(self, m, pis):
10227  """do_get_inputs(TransformedDistancePairScore self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
10228  return _IMP_core.TransformedDistancePairScore_do_get_inputs(self, m, pis)
10229 
10230 
10231  def get_version_info(self):
10232  """get_version_info(TransformedDistancePairScore self) -> VersionInfo"""
10233  return _IMP_core.TransformedDistancePairScore_get_version_info(self)
10234 
10235 
10236  def __str__(self):
10237  """__str__(TransformedDistancePairScore self) -> std::string"""
10238  return _IMP_core.TransformedDistancePairScore___str__(self)
10239 
10240 
10241  def __repr__(self):
10242  """__repr__(TransformedDistancePairScore self) -> std::string"""
10243  return _IMP_core.TransformedDistancePairScore___repr__(self)
10244 
10245 
10246  @staticmethod
10247  def get_from(o):
10248  return _object_cast_to_TransformedDistancePairScore(o)
10249 
10250 TransformedDistancePairScore_swigregister = _IMP_core.TransformedDistancePairScore_swigregister
10251 TransformedDistancePairScore_swigregister(TransformedDistancePairScore)
10252 
10253 class TypedPairScore(IMP.PairScore):
10254  """Proxy of C++ IMP::core::TypedPairScore class."""
10255 
10256  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
10257 
10258  def __init__(self, typekey, allow_invalid_types=True):
10259  """
10260  __init__(IMP::core::TypedPairScore self, IntKey typekey, bool allow_invalid_types=True) -> TypedPairScore
10261  __init__(IMP::core::TypedPairScore self, IntKey typekey) -> TypedPairScore
10262  """
10263  this = _IMP_core.new_TypedPairScore(typekey, allow_invalid_types)
10264  try:
10265  self.this.append(this)
10266  except __builtin__.Exception:
10267  self.this = this
10268 
10269  def set_particle_type(self, arg2):
10270  """set_particle_type(TypedPairScore self, Particle arg2)"""
10271  return _IMP_core.TypedPairScore_set_particle_type(self, arg2)
10272 
10273 
10274  def set_pair_score(self, ps, atype, btype):
10275  """set_pair_score(TypedPairScore self, PairScore ps, IMP::Int atype, IMP::Int btype)"""
10276  return _IMP_core.TypedPairScore_set_pair_score(self, ps, atype, btype)
10277 
10278 
10279  def do_get_inputs(self, m, pis):
10280  """do_get_inputs(TypedPairScore self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
10281  return _IMP_core.TypedPairScore_do_get_inputs(self, m, pis)
10282 
10283 
10284  def get_version_info(self):
10285  """get_version_info(TypedPairScore self) -> VersionInfo"""
10286  return _IMP_core.TypedPairScore_get_version_info(self)
10287 
10288 
10289  def __str__(self):
10290  """__str__(TypedPairScore self) -> std::string"""
10291  return _IMP_core.TypedPairScore___str__(self)
10292 
10293 
10294  def __repr__(self):
10295  """__repr__(TypedPairScore self) -> std::string"""
10296  return _IMP_core.TypedPairScore___repr__(self)
10297 
10298 
10299  @staticmethod
10300  def get_from(o):
10301  return _object_cast_to_TypedPairScore(o)
10302 
10303 TypedPairScore_swigregister = _IMP_core.TypedPairScore_swigregister
10304 TypedPairScore_swigregister(TypedPairScore)
10305 
10306 class RigidBodyDistancePairScore(KClosePairsPairScore):
10307  """Proxy of C++ IMP::core::RigidBodyDistancePairScore class."""
10308 
10309  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
10310 
10311  def __init__(self, ps, r):
10312  """__init__(IMP::core::RigidBodyDistancePairScore self, PairScore ps, Refiner r) -> RigidBodyDistancePairScore"""
10313  this = _IMP_core.new_RigidBodyDistancePairScore(ps, r)
10314  try:
10315  self.this.append(this)
10316  except __builtin__.Exception:
10317  self.this = this
10318 
10319  def __str__(self):
10320  """__str__(RigidBodyDistancePairScore self) -> std::string"""
10321  return _IMP_core.RigidBodyDistancePairScore___str__(self)
10322 
10323 
10324  def __repr__(self):
10325  """__repr__(RigidBodyDistancePairScore self) -> std::string"""
10326  return _IMP_core.RigidBodyDistancePairScore___repr__(self)
10327 
10328 
10329  @staticmethod
10330  def get_from(o):
10331  return _object_cast_to_RigidBodyDistancePairScore(o)
10332 
10333  __swig_destroy__ = _IMP_core.delete_RigidBodyDistancePairScore
10334  __del__ = lambda self: None
10335 RigidBodyDistancePairScore_swigregister = _IMP_core.RigidBodyDistancePairScore_swigregister
10336 RigidBodyDistancePairScore_swigregister(RigidBodyDistancePairScore)
10337 
10338 class RigidBodyAnglePairScore(IMP.PairScore):
10339  """Proxy of C++ IMP::core::RigidBodyAnglePairScore class."""
10340 
10341  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
10342 
10343  def __init__(self, f):
10344  """__init__(IMP::core::RigidBodyAnglePairScore self, UnaryFunction f) -> RigidBodyAnglePairScore"""
10345  this = _IMP_core.new_RigidBodyAnglePairScore(f)
10346  try:
10347  self.this.append(this)
10348  except __builtin__.Exception:
10349  self.this = this
10350 
10351  def do_get_inputs(self, m, pis):
10352  """do_get_inputs(RigidBodyAnglePairScore self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
10353  return _IMP_core.RigidBodyAnglePairScore_do_get_inputs(self, m, pis)
10354 
10355 
10356  def get_version_info(self):
10357  """get_version_info(RigidBodyAnglePairScore self) -> VersionInfo"""
10358  return _IMP_core.RigidBodyAnglePairScore_get_version_info(self)
10359 
10360 
10361  def __str__(self):
10362  """__str__(RigidBodyAnglePairScore self) -> std::string"""
10363  return _IMP_core.RigidBodyAnglePairScore___str__(self)
10364 
10365 
10366  def __repr__(self):
10367  """__repr__(RigidBodyAnglePairScore self) -> std::string"""
10368  return _IMP_core.RigidBodyAnglePairScore___repr__(self)
10369 
10370 
10371  @staticmethod
10372  def get_from(o):
10373  return _object_cast_to_RigidBodyAnglePairScore(o)
10374 
10375 RigidBodyAnglePairScore_swigregister = _IMP_core.RigidBodyAnglePairScore_swigregister
10376 RigidBodyAnglePairScore_swigregister(RigidBodyAnglePairScore)
10377 
10378 class TableRefiner(IMP.Refiner):
10379  """Proxy of C++ IMP::core::TableRefiner class."""
10380 
10381  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
10382 
10383  def __init__(self):
10384  """__init__(IMP::core::TableRefiner self) -> TableRefiner"""
10385  this = _IMP_core.new_TableRefiner()
10386  try:
10387  self.this.append(this)
10388  except __builtin__.Exception:
10389  self.this = this
10390 
10391  def add_particle(self, p, ps):
10392  """add_particle(TableRefiner self, Particle p, IMP::ParticlesTemp const & ps)"""
10393  return _IMP_core.TableRefiner_add_particle(self, p, ps)
10394 
10395 
10396  def remove_particle(self, p):
10397  """remove_particle(TableRefiner self, Particle p)"""
10398  return _IMP_core.TableRefiner_remove_particle(self, p)
10399 
10400 
10401  def set_particle(self, p, ps):
10402  """set_particle(TableRefiner self, Particle p, IMP::ParticlesTemp const & ps)"""
10403  return _IMP_core.TableRefiner_set_particle(self, p, ps)
10404 
10405 
10406  def do_get_inputs(self, m, pis):
10407  """do_get_inputs(TableRefiner self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
10408  return _IMP_core.TableRefiner_do_get_inputs(self, m, pis)
10409 
10410 
10411  def get_version_info(self):
10412  """get_version_info(TableRefiner self) -> VersionInfo"""
10413  return _IMP_core.TableRefiner_get_version_info(self)
10414 
10415 
10416  def __str__(self):
10417  """__str__(TableRefiner self) -> std::string"""
10418  return _IMP_core.TableRefiner___str__(self)
10419 
10420 
10421  def __repr__(self):
10422  """__repr__(TableRefiner self) -> std::string"""
10423  return _IMP_core.TableRefiner___repr__(self)
10424 
10425 
10426  @staticmethod
10427  def get_from(o):
10428  return _object_cast_to_TableRefiner(o)
10429 
10430 TableRefiner_swigregister = _IMP_core.TableRefiner_swigregister
10431 TableRefiner_swigregister(TableRefiner)
10432 
10433 LOWER = _IMP_core.LOWER
10434 BOTH = _IMP_core.BOTH
10435 UPPER = _IMP_core.UPPER
10436 class MCCGSampler(IMP.Sampler):
10437  """Proxy of C++ IMP::core::MCCGSampler class."""
10438 
10439  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
10440 
10441  def __init__(self, *args):
10442  """
10443  __init__(IMP::core::MCCGSampler self, Model m, std::string name) -> MCCGSampler
10444  __init__(IMP::core::MCCGSampler self, Model m) -> MCCGSampler
10445  """
10446  this = _IMP_core.new_MCCGSampler(*args)
10447  try:
10448  self.this.append(this)
10449  except __builtin__.Exception:
10450  self.this = this
10451 
10452  def set_bounding_box(self, bb):
10453  """set_bounding_box(MCCGSampler self, BoundingBox3D bb)"""
10454  return _IMP_core.MCCGSampler_set_bounding_box(self, bb)
10455 
10456 
10457  def set_number_of_attempts(self, att):
10458  """set_number_of_attempts(MCCGSampler self, unsigned int att)"""
10459  return _IMP_core.MCCGSampler_set_number_of_attempts(self, att)
10460 
10461 
10462  def set_number_of_monte_carlo_steps(self, cg):
10463  """set_number_of_monte_carlo_steps(MCCGSampler self, unsigned int cg)"""
10464  return _IMP_core.MCCGSampler_set_number_of_monte_carlo_steps(self, cg)
10465 
10466 
10467  def set_number_of_conjugate_gradient_steps(self, cg):
10468  """set_number_of_conjugate_gradient_steps(MCCGSampler self, unsigned int cg)"""
10469  return _IMP_core.MCCGSampler_set_number_of_conjugate_gradient_steps(self, cg)
10470 
10471 
10472  def set_max_monte_carlo_step_size(self, *args):
10473  """
10474  set_max_monte_carlo_step_size(MCCGSampler self, double d)
10475  set_max_monte_carlo_step_size(MCCGSampler self, FloatKey k, double d)
10476  """
10477  return _IMP_core.MCCGSampler_set_max_monte_carlo_step_size(self, *args)
10478 
10479 
10480  def set_is_refining(self, tf):
10481  """set_is_refining(MCCGSampler self, bool tf)"""
10482  return _IMP_core.MCCGSampler_set_is_refining(self, tf)
10483 
10484 
10485  def set_local_optimizer(self, opt):
10486  """set_local_optimizer(MCCGSampler self, Optimizer opt)"""
10487  return _IMP_core.MCCGSampler_set_local_optimizer(self, opt)
10488 
10489 
10490  def set_save_rejected_configurations(self, tf):
10491  """set_save_rejected_configurations(MCCGSampler self, bool tf)"""
10492  return _IMP_core.MCCGSampler_set_save_rejected_configurations(self, tf)
10493 
10494 
10495  def get_rejected_configurations(self):
10496  """get_rejected_configurations(MCCGSampler self) -> ConfigurationSet"""
10497  return _IMP_core.MCCGSampler_get_rejected_configurations(self)
10498 
10499 
10500  def remove_optimizer_state(self, d):
10501  """remove_optimizer_state(MCCGSampler self, OptimizerState d)"""
10502  return _IMP_core.MCCGSampler_remove_optimizer_state(self, d)
10503 
10504 
10505  def remove_optimizer_states(self, d):
10506  """remove_optimizer_states(MCCGSampler self, IMP::OptimizerStates const & d)"""
10507  return _IMP_core.MCCGSampler_remove_optimizer_states(self, d)
10508 
10509 
10510  def set_optimizer_states(self, ps):
10511  """set_optimizer_states(MCCGSampler self, IMP::OptimizerStates const & ps)"""
10512  return _IMP_core.MCCGSampler_set_optimizer_states(self, ps)
10513 
10514 
10515  def set_optimizer_states_order(self, objs):
10516  """set_optimizer_states_order(MCCGSampler self, IMP::OptimizerStates const & objs)"""
10517  return _IMP_core.MCCGSampler_set_optimizer_states_order(self, objs)
10518 
10519 
10520  def add_optimizer_state(self, obj):
10521  """add_optimizer_state(MCCGSampler self, OptimizerState obj) -> unsigned int"""
10522  return _IMP_core.MCCGSampler_add_optimizer_state(self, obj)
10523 
10524 
10525  def add_optimizer_states(self, objs):
10526  """add_optimizer_states(MCCGSampler self, IMP::OptimizerStates const & objs)"""
10527  return _IMP_core.MCCGSampler_add_optimizer_states(self, objs)
10528 
10529 
10530  def clear_optimizer_states(self):
10531  """clear_optimizer_states(MCCGSampler self)"""
10532  return _IMP_core.MCCGSampler_clear_optimizer_states(self)
10533 
10534 
10535  def get_number_of_optimizer_states(self):
10536  """get_number_of_optimizer_states(MCCGSampler self) -> unsigned int"""
10537  return _IMP_core.MCCGSampler_get_number_of_optimizer_states(self)
10538 
10539 
10540  def get_has_optimizer_states(self):
10541  """get_has_optimizer_states(MCCGSampler self) -> bool"""
10542  return _IMP_core.MCCGSampler_get_has_optimizer_states(self)
10543 
10544 
10545  def get_optimizer_state(self, i):
10546  """get_optimizer_state(MCCGSampler self, unsigned int i) -> OptimizerState"""
10547  return _IMP_core.MCCGSampler_get_optimizer_state(self, i)
10548 
10549 
10550  def get_optimizer_states(self):
10551  """get_optimizer_states(MCCGSampler self) -> IMP::OptimizerStates"""
10552  return _IMP_core.MCCGSampler_get_optimizer_states(self)
10553 
10554 
10555  def reserve_optimizer_states(self, sz):
10556  """reserve_optimizer_states(MCCGSampler self, unsigned int sz)"""
10557  return _IMP_core.MCCGSampler_reserve_optimizer_states(self, sz)
10558 
10559 
10560  def do_sample(self):
10561  """do_sample(MCCGSampler self) -> ConfigurationSet"""
10562  return _IMP_core.MCCGSampler_do_sample(self)
10563 
10564 
10565  def get_version_info(self):
10566  """get_version_info(MCCGSampler self) -> VersionInfo"""
10567  return _IMP_core.MCCGSampler_get_version_info(self)
10568 
10569 
10570  def __str__(self):
10571  """__str__(MCCGSampler self) -> std::string"""
10572  return _IMP_core.MCCGSampler___str__(self)
10573 
10574 
10575  def __repr__(self):
10576  """__repr__(MCCGSampler self) -> std::string"""
10577  return _IMP_core.MCCGSampler___repr__(self)
10578 
10579 
10580  @staticmethod
10581  def get_from(o):
10582  return _object_cast_to_MCCGSampler(o)
10583 
10584 MCCGSampler_swigregister = _IMP_core.MCCGSampler_swigregister
10585 MCCGSampler_swigregister(MCCGSampler)
10586 
10587 class MinimumRestraint(IMP.Restraint):
10588  """Proxy of C++ IMP::core::MinimumRestraint class."""
10589 
10590  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
10591 
10592  def __init__(self, *args):
10593  """
10594  __init__(IMP::core::MinimumRestraint self, unsigned int num, IMP::Restraints const & rs, std::string name) -> MinimumRestraint
10595  __init__(IMP::core::MinimumRestraint self, unsigned int num, IMP::Restraints const & rs) -> MinimumRestraint
10596  __init__(IMP::core::MinimumRestraint self, unsigned int num) -> MinimumRestraint
10597  """
10598  this = _IMP_core.new_MinimumRestraint(*args)
10599  try:
10600  self.this.append(this)
10601  except __builtin__.Exception:
10602  self.this = this
10603 
10604  def do_get_inputs(self):
10605  """do_get_inputs(MinimumRestraint self) -> IMP::ModelObjectsTemp"""
10606  return _IMP_core.MinimumRestraint_do_get_inputs(self)
10607 
10608 
10609  def get_version_info(self):
10610  """get_version_info(MinimumRestraint self) -> VersionInfo"""
10611  return _IMP_core.MinimumRestraint_get_version_info(self)
10612 
10613 
10614  def remove_restraint(self, d):
10615  """remove_restraint(MinimumRestraint self, Restraint d)"""
10616  return _IMP_core.MinimumRestraint_remove_restraint(self, d)
10617 
10618 
10619  def remove_restraints(self, d):
10620  """remove_restraints(MinimumRestraint self, IMP::Restraints const & d)"""
10621  return _IMP_core.MinimumRestraint_remove_restraints(self, d)
10622 
10623 
10624  def set_restraints(self, ps):
10625  """set_restraints(MinimumRestraint self, IMP::Restraints const & ps)"""
10626  return _IMP_core.MinimumRestraint_set_restraints(self, ps)
10627 
10628 
10629  def set_restraints_order(self, objs):
10630  """set_restraints_order(MinimumRestraint self, IMP::Restraints const & objs)"""
10631  return _IMP_core.MinimumRestraint_set_restraints_order(self, objs)
10632 
10633 
10634  def add_restraint(self, obj):
10635  """add_restraint(MinimumRestraint self, Restraint obj) -> unsigned int"""
10636  return _IMP_core.MinimumRestraint_add_restraint(self, obj)
10637 
10638 
10639  def add_restraints(self, objs):
10640  """add_restraints(MinimumRestraint self, IMP::Restraints const & objs)"""
10641  return _IMP_core.MinimumRestraint_add_restraints(self, objs)
10642 
10643 
10644  def clear_restraints(self):
10645  """clear_restraints(MinimumRestraint self)"""
10646  return _IMP_core.MinimumRestraint_clear_restraints(self)
10647 
10648 
10649  def get_number_of_restraints(self):
10650  """get_number_of_restraints(MinimumRestraint self) -> unsigned int"""
10651  return _IMP_core.MinimumRestraint_get_number_of_restraints(self)
10652 
10653 
10654  def get_has_restraints(self):
10655  """get_has_restraints(MinimumRestraint self) -> bool"""
10656  return _IMP_core.MinimumRestraint_get_has_restraints(self)
10657 
10658 
10659  def get_restraint(self, i):
10660  """get_restraint(MinimumRestraint self, unsigned int i) -> Restraint"""
10661  return _IMP_core.MinimumRestraint_get_restraint(self, i)
10662 
10663 
10664  def get_restraints(self):
10665  """get_restraints(MinimumRestraint self) -> IMP::Restraints"""
10666  return _IMP_core.MinimumRestraint_get_restraints(self)
10667 
10668 
10669  def reserve_restraints(self, sz):
10670  """reserve_restraints(MinimumRestraint self, unsigned int sz)"""
10671  return _IMP_core.MinimumRestraint_reserve_restraints(self, sz)
10672 
10673 
10674  def __str__(self):
10675  """__str__(MinimumRestraint self) -> std::string"""
10676  return _IMP_core.MinimumRestraint___str__(self)
10677 
10678 
10679  def __repr__(self):
10680  """__repr__(MinimumRestraint self) -> std::string"""
10681  return _IMP_core.MinimumRestraint___repr__(self)
10682 
10683 
10684  @staticmethod
10685  def get_from(o):
10686  return _object_cast_to_MinimumRestraint(o)
10687 
10688 MinimumRestraint_swigregister = _IMP_core.MinimumRestraint_swigregister
10689 MinimumRestraint_swigregister(MinimumRestraint)
10690 
10691 class Gaussian(RigidBody):
10692  """Proxy of C++ IMP::core::Gaussian class."""
10693 
10694  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
10695 
10696  def __init__(self, *args):
10697  """
10698  __init__(IMP::core::Gaussian self) -> Gaussian
10699  __init__(IMP::core::Gaussian self, Model m, ParticleIndex id) -> Gaussian
10700  __init__(IMP::core::Gaussian self, _ParticleAdaptor d) -> Gaussian
10701  """
10702  this = _IMP_core.new_Gaussian(*args)
10703  try:
10704  self.this.append(this)
10705  except __builtin__.Exception:
10706  self.this = this
10707 
10708  def show(self, *args):
10709  """
10710  show(Gaussian self, _ostream out)
10711  show(Gaussian self)
10712  """
10713  return _IMP_core.Gaussian_show(self, *args)
10714 
10715 
10716  def setup_particle(*args):
10717  """
10718  setup_particle(Model m, ParticleIndex pi) -> Gaussian
10719  setup_particle(_ParticleAdaptor decorator) -> Gaussian
10720  setup_particle(Model m, ParticleIndex pi, Gaussian3D g) -> Gaussian
10721  setup_particle(_ParticleAdaptor decorator, Gaussian3D g) -> Gaussian
10722  """
10723  return _IMP_core.Gaussian_setup_particle(*args)
10724 
10725  setup_particle = staticmethod(setup_particle)
10726 
10727  def get_local_covariance_key():
10728  """get_local_covariance_key() -> ObjectKey"""
10729  return _IMP_core.Gaussian_get_local_covariance_key()
10730 
10731  get_local_covariance_key = staticmethod(get_local_covariance_key)
10732 
10733  def get_global_covariance_key():
10734  """get_global_covariance_key() -> ObjectKey"""
10735  return _IMP_core.Gaussian_get_global_covariance_key()
10736 
10737  get_global_covariance_key = staticmethod(get_global_covariance_key)
10738 
10739  def get_is_setup(*args):
10740  """
10741  get_is_setup(_ParticleAdaptor p) -> bool
10742  get_is_setup(Model m, ParticleIndex pi) -> bool
10743  """
10744  return _IMP_core.Gaussian_get_is_setup(*args)
10745 
10746  get_is_setup = staticmethod(get_is_setup)
10747 
10748  def get_local_covariance(self):
10749  """get_local_covariance(Gaussian self) -> Eigen::Matrix3d"""
10750  return _IMP_core.Gaussian_get_local_covariance(self)
10751 
10752 
10753  def get_variances(self):
10754  """get_variances(Gaussian self) -> Vector3D"""
10755  return _IMP_core.Gaussian_get_variances(self)
10756 
10757 
10758  def get_global_covariance(self):
10759  """get_global_covariance(Gaussian self) -> Eigen::Matrix3d"""
10760  return _IMP_core.Gaussian_get_global_covariance(self)
10761 
10762 
10763  def get_gaussian(self):
10764  """get_gaussian(Gaussian self) -> Gaussian3D"""
10765  return _IMP_core.Gaussian_get_gaussian(self)
10766 
10767 
10768  def set_gaussian(self, g):
10769  """set_gaussian(Gaussian self, Gaussian3D g)"""
10770  return _IMP_core.Gaussian_set_gaussian(self, g)
10771 
10772 
10773  def set_local_covariance(self, covar):
10774  """set_local_covariance(Gaussian self, Eigen::Vector3d const covar)"""
10775  return _IMP_core.Gaussian_set_local_covariance(self, covar)
10776 
10777 
10778  def set_variances(self, v):
10779  """set_variances(Gaussian self, Vector3D v)"""
10780  return _IMP_core.Gaussian_set_variances(self, v)
10781 
10782 
10783  def set_global_covariance(self, covar):
10784  """set_global_covariance(Gaussian self, Eigen::Matrix3d covar)"""
10785  return _IMP_core.Gaussian_set_global_covariance(self, covar)
10786 
10787 
10788  def update_global_covariance(self):
10789  """update_global_covariance(Gaussian self)"""
10790  return _IMP_core.Gaussian_update_global_covariance(self)
10791 
10792 
10793  def add_attribute(self, *args):
10794  """
10795  add_attribute(Gaussian self, FloatKey k, IMP::Float v, bool opt)
10796  add_attribute(Gaussian self, FloatKey a0, IMP::Float a1)
10797  add_attribute(Gaussian self, IntKey a0, IMP::Int a1)
10798  add_attribute(Gaussian self, StringKey a0, IMP::String a1)
10799  add_attribute(Gaussian self, ParticleIndexKey a0, Particle a1)
10800  add_attribute(Gaussian self, ObjectKey a0, Object a1)
10801  """
10802  return _IMP_core.Gaussian_add_attribute(self, *args)
10803 
10804 
10805  def get_value(self, *args):
10806  """
10807  get_value(Gaussian self, FloatKey a0) -> IMP::Float
10808  get_value(Gaussian self, IntKey a0) -> IMP::Int
10809  get_value(Gaussian self, StringKey a0) -> IMP::String
10810  get_value(Gaussian self, ParticleIndexKey a0) -> Particle
10811  get_value(Gaussian self, ObjectKey a0) -> Object
10812  """
10813  return _IMP_core.Gaussian_get_value(self, *args)
10814 
10815 
10816  def set_value(self, *args):
10817  """
10818  set_value(Gaussian self, FloatKey a0, IMP::Float a1)
10819  set_value(Gaussian self, IntKey a0, IMP::Int a1)
10820  set_value(Gaussian self, StringKey a0, IMP::String a1)
10821  set_value(Gaussian self, ParticleIndexKey a0, Particle a1)
10822  set_value(Gaussian self, ObjectKey a0, Object a1)
10823  """
10824  return _IMP_core.Gaussian_set_value(self, *args)
10825 
10826 
10827  def remove_attribute(self, *args):
10828  """
10829  remove_attribute(Gaussian self, FloatKey a0)
10830  remove_attribute(Gaussian self, IntKey a0)
10831  remove_attribute(Gaussian self, StringKey a0)
10832  remove_attribute(Gaussian self, ParticleIndexKey a0)
10833  remove_attribute(Gaussian self, ObjectKey a0)
10834  """
10835  return _IMP_core.Gaussian_remove_attribute(self, *args)
10836 
10837 
10838  def has_attribute(self, *args):
10839  """
10840  has_attribute(Gaussian self, FloatKey a0) -> bool
10841  has_attribute(Gaussian self, IntKey a0) -> bool
10842  has_attribute(Gaussian self, StringKey a0) -> bool
10843  has_attribute(Gaussian self, ParticleIndexKey a0) -> bool
10844  has_attribute(Gaussian self, ObjectKey a0) -> bool
10845  """
10846  return _IMP_core.Gaussian_has_attribute(self, *args)
10847 
10848 
10849  def get_derivative(self, a0):
10850  """get_derivative(Gaussian self, FloatKey a0) -> double"""
10851  return _IMP_core.Gaussian_get_derivative(self, a0)
10852 
10853 
10854  def get_name(self):
10855  """get_name(Gaussian self) -> std::string"""
10856  return _IMP_core.Gaussian_get_name(self)
10857 
10858 
10859  def clear_caches(self):
10860  """clear_caches(Gaussian self)"""
10861  return _IMP_core.Gaussian_clear_caches(self)
10862 
10863 
10864  def set_name(self, a0):
10865  """set_name(Gaussian self, std::string a0)"""
10866  return _IMP_core.Gaussian_set_name(self, a0)
10867 
10868 
10869  def set_check_level(self, a0):
10870  """set_check_level(Gaussian self, IMP::CheckLevel a0)"""
10871  return _IMP_core.Gaussian_set_check_level(self, a0)
10872 
10873 
10874  def add_to_derivative(self, a0, a1, a2):
10875  """add_to_derivative(Gaussian self, FloatKey a0, double a1, DerivativeAccumulator a2)"""
10876  return _IMP_core.Gaussian_add_to_derivative(self, a0, a1, a2)
10877 
10878 
10879  def set_is_optimized(self, a0, a1):
10880  """set_is_optimized(Gaussian self, FloatKey a0, bool a1)"""
10881  return _IMP_core.Gaussian_set_is_optimized(self, a0, a1)
10882 
10883 
10884  def get_is_optimized(self, a0):
10885  """get_is_optimized(Gaussian self, FloatKey a0) -> bool"""
10886  return _IMP_core.Gaussian_get_is_optimized(self, a0)
10887 
10888 
10889  def get_check_level(self):
10890  """get_check_level(Gaussian self) -> IMP::CheckLevel"""
10891  return _IMP_core.Gaussian_get_check_level(self)
10892 
10893 
10894  def __eq__(self, *args):
10895  """
10896  __eq__(Gaussian self, Gaussian o) -> bool
10897  __eq__(Gaussian self, Particle d) -> bool
10898  """
10899  return _IMP_core.Gaussian___eq__(self, *args)
10900 
10901 
10902  def __ne__(self, *args):
10903  """
10904  __ne__(Gaussian self, Gaussian o) -> bool
10905  __ne__(Gaussian self, Particle d) -> bool
10906  """
10907  return _IMP_core.Gaussian___ne__(self, *args)
10908 
10909 
10910  def __le__(self, *args):
10911  """
10912  __le__(Gaussian self, Gaussian o) -> bool
10913  __le__(Gaussian self, Particle d) -> bool
10914  """
10915  return _IMP_core.Gaussian___le__(self, *args)
10916 
10917 
10918  def __lt__(self, *args):
10919  """
10920  __lt__(Gaussian self, Gaussian o) -> bool
10921  __lt__(Gaussian self, Particle d) -> bool
10922  """
10923  return _IMP_core.Gaussian___lt__(self, *args)
10924 
10925 
10926  def __ge__(self, *args):
10927  """
10928  __ge__(Gaussian self, Gaussian o) -> bool
10929  __ge__(Gaussian self, Particle d) -> bool
10930  """
10931  return _IMP_core.Gaussian___ge__(self, *args)
10932 
10933 
10934  def __gt__(self, *args):
10935  """
10936  __gt__(Gaussian self, Gaussian o) -> bool
10937  __gt__(Gaussian self, Particle d) -> bool
10938  """
10939  return _IMP_core.Gaussian___gt__(self, *args)
10940 
10941 
10942  def __hash__(self):
10943  """__hash__(Gaussian self) -> std::size_t"""
10944  return _IMP_core.Gaussian___hash__(self)
10945 
10946 
10947  def __str__(self):
10948  """__str__(Gaussian self) -> std::string"""
10949  return _IMP_core.Gaussian___str__(self)
10950 
10951 
10952  def __repr__(self):
10953  """__repr__(Gaussian self) -> std::string"""
10954  return _IMP_core.Gaussian___repr__(self)
10955 
10956  __swig_destroy__ = _IMP_core.delete_Gaussian
10957  __del__ = lambda self: None
10958 Gaussian_swigregister = _IMP_core.Gaussian_swigregister
10959 Gaussian_swigregister(Gaussian)
10960 
10961 def Gaussian_setup_particle(*args):
10962  """
10963  setup_particle(Model m, ParticleIndex pi) -> Gaussian
10964  setup_particle(_ParticleAdaptor decorator) -> Gaussian
10965  setup_particle(Model m, ParticleIndex pi, Gaussian3D g) -> Gaussian
10966  Gaussian_setup_particle(_ParticleAdaptor decorator, Gaussian3D g) -> Gaussian
10967  """
10968  return _IMP_core.Gaussian_setup_particle(*args)
10969 
10970 def Gaussian_get_local_covariance_key():
10971  """Gaussian_get_local_covariance_key() -> ObjectKey"""
10972  return _IMP_core.Gaussian_get_local_covariance_key()
10973 
10974 def Gaussian_get_global_covariance_key():
10975  """Gaussian_get_global_covariance_key() -> ObjectKey"""
10976  return _IMP_core.Gaussian_get_global_covariance_key()
10977 
10978 def Gaussian_get_is_setup(*args):
10979  """
10980  get_is_setup(_ParticleAdaptor p) -> bool
10981  Gaussian_get_is_setup(Model m, ParticleIndex pi) -> bool
10982  """
10983  return _IMP_core.Gaussian_get_is_setup(*args)
10984 
10985 class PairRestraint(IMP.Restraint):
10986  """Proxy of C++ IMP::core::PairRestraint class."""
10987 
10988  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
10989 
10990  def __init__(self, *args):
10991  """
10992  __init__(IMP::core::PairRestraint self, Model m, PairScore ss, IMP::ParticleIndexPair const & vt, std::string name) -> PairRestraint
10993  __init__(IMP::core::PairRestraint self, Model m, PairScore ss, IMP::ParticleIndexPair const & vt) -> PairRestraint
10994  """
10995  this = _IMP_core.new_PairRestraint(*args)
10996  try:
10997  self.this.append(this)
10998  except __builtin__.Exception:
10999  self.this = this
11000 
11001  def get_version_info(self):
11002  """get_version_info(PairRestraint self) -> VersionInfo"""
11003  return _IMP_core.PairRestraint_get_version_info(self)
11004 
11005 
11006  def __str__(self):
11007  """__str__(PairRestraint self) -> std::string"""
11008  return _IMP_core.PairRestraint___str__(self)
11009 
11010 
11011  def __repr__(self):
11012  """__repr__(PairRestraint self) -> std::string"""
11013  return _IMP_core.PairRestraint___repr__(self)
11014 
11015 
11016  @staticmethod
11017  def get_from(o):
11018  return _object_cast_to_PairRestraint(o)
11019 
11020 PairRestraint_swigregister = _IMP_core.PairRestraint_swigregister
11021 PairRestraint_swigregister(PairRestraint)
11022 
11023 class SingletonRestraint(IMP.Restraint):
11024  """Proxy of C++ IMP::core::SingletonRestraint class."""
11025 
11026  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
11027 
11028  def __init__(self, *args):
11029  """
11030  __init__(IMP::core::SingletonRestraint self, Model m, SingletonScore ss, ParticleIndex vt, std::string name) -> SingletonRestraint
11031  __init__(IMP::core::SingletonRestraint self, Model m, SingletonScore ss, ParticleIndex vt) -> SingletonRestraint
11032  """
11033  this = _IMP_core.new_SingletonRestraint(*args)
11034  try:
11035  self.this.append(this)
11036  except __builtin__.Exception:
11037  self.this = this
11038 
11039  def get_version_info(self):
11040  """get_version_info(SingletonRestraint self) -> VersionInfo"""
11041  return _IMP_core.SingletonRestraint_get_version_info(self)
11042 
11043 
11044  def __str__(self):
11045  """__str__(SingletonRestraint self) -> std::string"""
11046  return _IMP_core.SingletonRestraint___str__(self)
11047 
11048 
11049  def __repr__(self):
11050  """__repr__(SingletonRestraint self) -> std::string"""
11051  return _IMP_core.SingletonRestraint___repr__(self)
11052 
11053 
11054  @staticmethod
11055  def get_from(o):
11056  return _object_cast_to_SingletonRestraint(o)
11057 
11058 SingletonRestraint_swigregister = _IMP_core.SingletonRestraint_swigregister
11059 SingletonRestraint_swigregister(SingletonRestraint)
11060 
11061 class TripletRestraint(IMP.Restraint):
11062  """Proxy of C++ IMP::core::TripletRestraint class."""
11063 
11064  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
11065 
11066  def __init__(self, *args):
11067  """
11068  __init__(IMP::core::TripletRestraint self, Model m, TripletScore ss, IMP::ParticleIndexTriplet const & vt, std::string name) -> TripletRestraint
11069  __init__(IMP::core::TripletRestraint self, Model m, TripletScore ss, IMP::ParticleIndexTriplet const & vt) -> TripletRestraint
11070  """
11071  this = _IMP_core.new_TripletRestraint(*args)
11072  try:
11073  self.this.append(this)
11074  except __builtin__.Exception:
11075  self.this = this
11076 
11077  def get_version_info(self):
11078  """get_version_info(TripletRestraint self) -> VersionInfo"""
11079  return _IMP_core.TripletRestraint_get_version_info(self)
11080 
11081 
11082  def __str__(self):
11083  """__str__(TripletRestraint self) -> std::string"""
11084  return _IMP_core.TripletRestraint___str__(self)
11085 
11086 
11087  def __repr__(self):
11088  """__repr__(TripletRestraint self) -> std::string"""
11089  return _IMP_core.TripletRestraint___repr__(self)
11090 
11091 
11092  @staticmethod
11093  def get_from(o):
11094  return _object_cast_to_TripletRestraint(o)
11095 
11096 TripletRestraint_swigregister = _IMP_core.TripletRestraint_swigregister
11097 TripletRestraint_swigregister(TripletRestraint)
11098 
11099 class QuadRestraint(IMP.Restraint):
11100  """Proxy of C++ IMP::core::QuadRestraint class."""
11101 
11102  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
11103 
11104  def __init__(self, *args):
11105  """
11106  __init__(IMP::core::QuadRestraint self, Model m, QuadScore ss, IMP::ParticleIndexQuad const & vt, std::string name) -> QuadRestraint
11107  __init__(IMP::core::QuadRestraint self, Model m, QuadScore ss, IMP::ParticleIndexQuad const & vt) -> QuadRestraint
11108  """
11109  this = _IMP_core.new_QuadRestraint(*args)
11110  try:
11111  self.this.append(this)
11112  except __builtin__.Exception:
11113  self.this = this
11114 
11115  def get_version_info(self):
11116  """get_version_info(QuadRestraint self) -> VersionInfo"""
11117  return _IMP_core.QuadRestraint_get_version_info(self)
11118 
11119 
11120  def __str__(self):
11121  """__str__(QuadRestraint self) -> std::string"""
11122  return _IMP_core.QuadRestraint___str__(self)
11123 
11124 
11125  def __repr__(self):
11126  """__repr__(QuadRestraint self) -> std::string"""
11127  return _IMP_core.QuadRestraint___repr__(self)
11128 
11129 
11130  @staticmethod
11131  def get_from(o):
11132  return _object_cast_to_QuadRestraint(o)
11133 
11134 QuadRestraint_swigregister = _IMP_core.QuadRestraint_swigregister
11135 QuadRestraint_swigregister(QuadRestraint)
11136 
11137 class SingletonConstraint(IMP.Constraint):
11138  """Proxy of C++ IMP::core::SingletonConstraint class."""
11139 
11140  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
11141 
11142  def __init__(self, *args):
11143  """
11144  __init__(IMP::core::SingletonConstraint self, SingletonModifier before, SingletonModifier after, Particle vt, std::string name) -> SingletonConstraint
11145  __init__(IMP::core::SingletonConstraint self, SingletonModifier before, SingletonModifier after, Particle vt) -> SingletonConstraint
11146  __init__(IMP::core::SingletonConstraint self, SingletonModifier before, SingletonModifier after, Model m, ParticleIndex vt, std::string name) -> SingletonConstraint
11147  __init__(IMP::core::SingletonConstraint self, SingletonModifier before, SingletonModifier after, Model m, ParticleIndex vt) -> SingletonConstraint
11148  """
11149  this = _IMP_core.new_SingletonConstraint(*args)
11150  try:
11151  self.this.append(this)
11152  except __builtin__.Exception:
11153  self.this = this
11154 
11155  def get_version_info(self):
11156  """get_version_info(SingletonConstraint self) -> VersionInfo"""
11157  return _IMP_core.SingletonConstraint_get_version_info(self)
11158 
11159 
11160  def __str__(self):
11161  """__str__(SingletonConstraint self) -> std::string"""
11162  return _IMP_core.SingletonConstraint___str__(self)
11163 
11164 
11165  def __repr__(self):
11166  """__repr__(SingletonConstraint self) -> std::string"""
11167  return _IMP_core.SingletonConstraint___repr__(self)
11168 
11169 
11170  @staticmethod
11171  def get_from(o):
11172  return _object_cast_to_SingletonConstraint(o)
11173 
11174 SingletonConstraint_swigregister = _IMP_core.SingletonConstraint_swigregister
11175 SingletonConstraint_swigregister(SingletonConstraint)
11176 
11177 class PairConstraint(IMP.Constraint):
11178  """Proxy of C++ IMP::core::PairConstraint class."""
11179 
11180  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
11181 
11182  def __init__(self, *args):
11183  """
11184  __init__(IMP::core::PairConstraint self, PairModifier before, PairModifier after, IMP::ParticlePair const & vt, std::string name) -> PairConstraint
11185  __init__(IMP::core::PairConstraint self, PairModifier before, PairModifier after, IMP::ParticlePair const & vt) -> PairConstraint
11186  __init__(IMP::core::PairConstraint self, PairModifier before, PairModifier after, Model m, IMP::ParticleIndexPair const & vt, std::string name) -> PairConstraint
11187  __init__(IMP::core::PairConstraint self, PairModifier before, PairModifier after, Model m, IMP::ParticleIndexPair const & vt) -> PairConstraint
11188  """
11189  this = _IMP_core.new_PairConstraint(*args)
11190  try:
11191  self.this.append(this)
11192  except __builtin__.Exception:
11193  self.this = this
11194 
11195  def get_version_info(self):
11196  """get_version_info(PairConstraint self) -> VersionInfo"""
11197  return _IMP_core.PairConstraint_get_version_info(self)
11198 
11199 
11200  def __str__(self):
11201  """__str__(PairConstraint self) -> std::string"""
11202  return _IMP_core.PairConstraint___str__(self)
11203 
11204 
11205  def __repr__(self):
11206  """__repr__(PairConstraint self) -> std::string"""
11207  return _IMP_core.PairConstraint___repr__(self)
11208 
11209 
11210  @staticmethod
11211  def get_from(o):
11212  return _object_cast_to_PairConstraint(o)
11213 
11214 PairConstraint_swigregister = _IMP_core.PairConstraint_swigregister
11215 PairConstraint_swigregister(PairConstraint)
11216 
11217 class TripletConstraint(IMP.Constraint):
11218  """Proxy of C++ IMP::core::TripletConstraint class."""
11219 
11220  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
11221 
11222  def __init__(self, *args):
11223  """
11224  __init__(IMP::core::TripletConstraint self, TripletModifier before, TripletModifier after, IMP::ParticleTriplet const & vt, std::string name) -> TripletConstraint
11225  __init__(IMP::core::TripletConstraint self, TripletModifier before, TripletModifier after, IMP::ParticleTriplet const & vt) -> TripletConstraint
11226  __init__(IMP::core::TripletConstraint self, TripletModifier before, TripletModifier after, Model m, IMP::ParticleIndexTriplet const & vt, std::string name) -> TripletConstraint
11227  __init__(IMP::core::TripletConstraint self, TripletModifier before, TripletModifier after, Model m, IMP::ParticleIndexTriplet const & vt) -> TripletConstraint
11228  """
11229  this = _IMP_core.new_TripletConstraint(*args)
11230  try:
11231  self.this.append(this)
11232  except __builtin__.Exception:
11233  self.this = this
11234 
11235  def get_version_info(self):
11236  """get_version_info(TripletConstraint self) -> VersionInfo"""
11237  return _IMP_core.TripletConstraint_get_version_info(self)
11238 
11239 
11240  def __str__(self):
11241  """__str__(TripletConstraint self) -> std::string"""
11242  return _IMP_core.TripletConstraint___str__(self)
11243 
11244 
11245  def __repr__(self):
11246  """__repr__(TripletConstraint self) -> std::string"""
11247  return _IMP_core.TripletConstraint___repr__(self)
11248 
11249 
11250  @staticmethod
11251  def get_from(o):
11252  return _object_cast_to_TripletConstraint(o)
11253 
11254 TripletConstraint_swigregister = _IMP_core.TripletConstraint_swigregister
11255 TripletConstraint_swigregister(TripletConstraint)
11256 
11257 class QuadConstraint(IMP.Constraint):
11258  """Proxy of C++ IMP::core::QuadConstraint class."""
11259 
11260  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
11261 
11262  def __init__(self, *args):
11263  """
11264  __init__(IMP::core::QuadConstraint self, QuadModifier before, QuadModifier after, IMP::ParticleQuad const & vt, std::string name) -> QuadConstraint
11265  __init__(IMP::core::QuadConstraint self, QuadModifier before, QuadModifier after, IMP::ParticleQuad const & vt) -> QuadConstraint
11266  __init__(IMP::core::QuadConstraint self, QuadModifier before, QuadModifier after, Model m, IMP::ParticleIndexQuad const & vt, std::string name) -> QuadConstraint
11267  __init__(IMP::core::QuadConstraint self, QuadModifier before, QuadModifier after, Model m, IMP::ParticleIndexQuad const & vt) -> QuadConstraint
11268  """
11269  this = _IMP_core.new_QuadConstraint(*args)
11270  try:
11271  self.this.append(this)
11272  except __builtin__.Exception:
11273  self.this = this
11274 
11275  def get_version_info(self):
11276  """get_version_info(QuadConstraint self) -> VersionInfo"""
11277  return _IMP_core.QuadConstraint_get_version_info(self)
11278 
11279 
11280  def __str__(self):
11281  """__str__(QuadConstraint self) -> std::string"""
11282  return _IMP_core.QuadConstraint___str__(self)
11283 
11284 
11285  def __repr__(self):
11286  """__repr__(QuadConstraint self) -> std::string"""
11287  return _IMP_core.QuadConstraint___repr__(self)
11288 
11289 
11290  @staticmethod
11291  def get_from(o):
11292  return _object_cast_to_QuadConstraint(o)
11293 
11294 QuadConstraint_swigregister = _IMP_core.QuadConstraint_swigregister
11295 QuadConstraint_swigregister(QuadConstraint)
11296 
11297 class ConstantSingletonPredicate(IMP.SingletonPredicate):
11298  """Proxy of C++ IMP::core::ConstantSingletonPredicate class."""
11299 
11300  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
11301 
11302  def __init__(self, *args):
11303  """
11304  __init__(IMP::core::ConstantSingletonPredicate self, int v, std::string name) -> ConstantSingletonPredicate
11305  __init__(IMP::core::ConstantSingletonPredicate self, int v) -> ConstantSingletonPredicate
11306  """
11307  this = _IMP_core.new_ConstantSingletonPredicate(*args)
11308  try:
11309  self.this.append(this)
11310  except __builtin__.Exception:
11311  self.this = this
11312 
11313  def do_get_inputs(self, arg2, arg3):
11314  """do_get_inputs(ConstantSingletonPredicate self, Model arg2, IMP::ParticleIndexes const & arg3) -> IMP::ModelObjectsTemp"""
11315  return _IMP_core.ConstantSingletonPredicate_do_get_inputs(self, arg2, arg3)
11316 
11317 
11318  def get_value(self, *args):
11319  """
11320  get_value(ConstantSingletonPredicate self, Particle a) -> int
11321  get_value(ConstantSingletonPredicate self, IMP::ParticlesTemp const & o) -> IMP::Ints
11322  """
11323  return _IMP_core.ConstantSingletonPredicate_get_value(self, *args)
11324 
11325 
11326  def get_value_index(self, *args):
11327  """
11328  get_value_index(ConstantSingletonPredicate self, Model arg2, ParticleIndex arg3) -> int
11329  get_value_index(ConstantSingletonPredicate self, Model m, IMP::ParticleIndexes const & o) -> IMP::Ints
11330  """
11331  return _IMP_core.ConstantSingletonPredicate_get_value_index(self, *args)
11332 
11333 
11334  def get_version_info(self):
11335  """get_version_info(ConstantSingletonPredicate self) -> VersionInfo"""
11336  return _IMP_core.ConstantSingletonPredicate_get_version_info(self)
11337 
11338 
11339  def __str__(self):
11340  """__str__(ConstantSingletonPredicate self) -> std::string"""
11341  return _IMP_core.ConstantSingletonPredicate___str__(self)
11342 
11343 
11344  def __repr__(self):
11345  """__repr__(ConstantSingletonPredicate self) -> std::string"""
11346  return _IMP_core.ConstantSingletonPredicate___repr__(self)
11347 
11348 
11349  @staticmethod
11350  def get_from(o):
11351  return _object_cast_to_ConstantSingletonPredicate(o)
11352 
11353 ConstantSingletonPredicate_swigregister = _IMP_core.ConstantSingletonPredicate_swigregister
11354 ConstantSingletonPredicate_swigregister(ConstantSingletonPredicate)
11355 
11356 class UnorderedTypeSingletonPredicate(IMP.SingletonPredicate):
11357  """Proxy of C++ IMP::core::UnorderedTypeSingletonPredicate class."""
11358 
11359  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
11360 
11361  def __init__(self, *args):
11362  """
11363  __init__(IMP::core::UnorderedTypeSingletonPredicate self, std::string name) -> UnorderedTypeSingletonPredicate
11364  __init__(IMP::core::UnorderedTypeSingletonPredicate self) -> UnorderedTypeSingletonPredicate
11365  """
11366  this = _IMP_core.new_UnorderedTypeSingletonPredicate(*args)
11367  try:
11368  self.this.append(this)
11369  except __builtin__.Exception:
11370  self.this = this
11371 
11372  def do_get_inputs(self, m, pis):
11373  """do_get_inputs(UnorderedTypeSingletonPredicate self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
11374  return _IMP_core.UnorderedTypeSingletonPredicate_do_get_inputs(self, m, pis)
11375 
11376 
11377  def get_value(self, *args):
11378  """
11379  get_value(UnorderedTypeSingletonPredicate self, Particle a) -> int
11380  get_value(UnorderedTypeSingletonPredicate self, IMP::ParticlesTemp const & o) -> IMP::Ints
11381  """
11382  return _IMP_core.UnorderedTypeSingletonPredicate_get_value(self, *args)
11383 
11384 
11385  def get_value_index(self, *args):
11386  """
11387  get_value_index(UnorderedTypeSingletonPredicate self, Model m, ParticleIndex pi) -> int
11388  get_value_index(UnorderedTypeSingletonPredicate self, Model m, IMP::ParticleIndexes const & o) -> IMP::Ints
11389  """
11390  return _IMP_core.UnorderedTypeSingletonPredicate_get_value_index(self, *args)
11391 
11392 
11393  def get_version_info(self):
11394  """get_version_info(UnorderedTypeSingletonPredicate self) -> VersionInfo"""
11395  return _IMP_core.UnorderedTypeSingletonPredicate_get_version_info(self)
11396 
11397 
11398  def __str__(self):
11399  """__str__(UnorderedTypeSingletonPredicate self) -> std::string"""
11400  return _IMP_core.UnorderedTypeSingletonPredicate___str__(self)
11401 
11402 
11403  def __repr__(self):
11404  """__repr__(UnorderedTypeSingletonPredicate self) -> std::string"""
11405  return _IMP_core.UnorderedTypeSingletonPredicate___repr__(self)
11406 
11407 
11408  @staticmethod
11409  def get_from(o):
11410  return _object_cast_to_UnorderedTypeSingletonPredicate(o)
11411 
11412 UnorderedTypeSingletonPredicate_swigregister = _IMP_core.UnorderedTypeSingletonPredicate_swigregister
11413 UnorderedTypeSingletonPredicate_swigregister(UnorderedTypeSingletonPredicate)
11414 
11415 class OrderedTypeSingletonPredicate(IMP.SingletonPredicate):
11416  """Proxy of C++ IMP::core::OrderedTypeSingletonPredicate class."""
11417 
11418  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
11419 
11420  def __init__(self, *args):
11421  """
11422  __init__(IMP::core::OrderedTypeSingletonPredicate self, std::string name) -> OrderedTypeSingletonPredicate
11423  __init__(IMP::core::OrderedTypeSingletonPredicate self) -> OrderedTypeSingletonPredicate
11424  """
11425  this = _IMP_core.new_OrderedTypeSingletonPredicate(*args)
11426  try:
11427  self.this.append(this)
11428  except __builtin__.Exception:
11429  self.this = this
11430 
11431  def do_get_inputs(self, m, pis):
11432  """do_get_inputs(OrderedTypeSingletonPredicate self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
11433  return _IMP_core.OrderedTypeSingletonPredicate_do_get_inputs(self, m, pis)
11434 
11435 
11436  def get_value(self, *args):
11437  """
11438  get_value(OrderedTypeSingletonPredicate self, IMP::core::ParticleTypes const & types) -> int
11439  get_value(OrderedTypeSingletonPredicate self, Particle a) -> int
11440  get_value(OrderedTypeSingletonPredicate self, IMP::ParticlesTemp const & o) -> IMP::Ints
11441  """
11442  return _IMP_core.OrderedTypeSingletonPredicate_get_value(self, *args)
11443 
11444 
11445  def get_value_index(self, *args):
11446  """
11447  get_value_index(OrderedTypeSingletonPredicate self, Model m, ParticleIndex pi) -> int
11448  get_value_index(OrderedTypeSingletonPredicate self, Model m, IMP::ParticleIndexes const & o) -> IMP::Ints
11449  """
11450  return _IMP_core.OrderedTypeSingletonPredicate_get_value_index(self, *args)
11451 
11452 
11453  def get_version_info(self):
11454  """get_version_info(OrderedTypeSingletonPredicate self) -> VersionInfo"""
11455  return _IMP_core.OrderedTypeSingletonPredicate_get_version_info(self)
11456 
11457 
11458  def __str__(self):
11459  """__str__(OrderedTypeSingletonPredicate self) -> std::string"""
11460  return _IMP_core.OrderedTypeSingletonPredicate___str__(self)
11461 
11462 
11463  def __repr__(self):
11464  """__repr__(OrderedTypeSingletonPredicate self) -> std::string"""
11465  return _IMP_core.OrderedTypeSingletonPredicate___repr__(self)
11466 
11467 
11468  @staticmethod
11469  def get_from(o):
11470  return _object_cast_to_OrderedTypeSingletonPredicate(o)
11471 
11472 OrderedTypeSingletonPredicate_swigregister = _IMP_core.OrderedTypeSingletonPredicate_swigregister
11473 OrderedTypeSingletonPredicate_swigregister(OrderedTypeSingletonPredicate)
11474 
11475 class AllSameSingletonPredicate(IMP.SingletonPredicate):
11476  """Proxy of C++ IMP::core::AllSameSingletonPredicate class."""
11477 
11478  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
11479 
11480  def __init__(self, *args):
11481  """
11482  __init__(IMP::core::AllSameSingletonPredicate self, std::string name) -> AllSameSingletonPredicate
11483  __init__(IMP::core::AllSameSingletonPredicate self) -> AllSameSingletonPredicate
11484  """
11485  this = _IMP_core.new_AllSameSingletonPredicate(*args)
11486  try:
11487  self.this.append(this)
11488  except __builtin__.Exception:
11489  self.this = this
11490 
11491  def do_get_inputs(self, arg2, arg3):
11492  """do_get_inputs(AllSameSingletonPredicate self, Model arg2, IMP::ParticleIndexes const & arg3) -> IMP::ModelObjectsTemp"""
11493  return _IMP_core.AllSameSingletonPredicate_do_get_inputs(self, arg2, arg3)
11494 
11495 
11496  def get_value(self, *args):
11497  """
11498  get_value(AllSameSingletonPredicate self, Particle a) -> int
11499  get_value(AllSameSingletonPredicate self, IMP::ParticlesTemp const & o) -> IMP::Ints
11500  """
11501  return _IMP_core.AllSameSingletonPredicate_get_value(self, *args)
11502 
11503 
11504  def get_value_index(self, *args):
11505  """
11506  get_value_index(AllSameSingletonPredicate self, Model m, ParticleIndex pi) -> int
11507  get_value_index(AllSameSingletonPredicate self, Model m, IMP::ParticleIndexes const & o) -> IMP::Ints
11508  """
11509  return _IMP_core.AllSameSingletonPredicate_get_value_index(self, *args)
11510 
11511 
11512  def get_version_info(self):
11513  """get_version_info(AllSameSingletonPredicate self) -> VersionInfo"""
11514  return _IMP_core.AllSameSingletonPredicate_get_version_info(self)
11515 
11516 
11517  def __str__(self):
11518  """__str__(AllSameSingletonPredicate self) -> std::string"""
11519  return _IMP_core.AllSameSingletonPredicate___str__(self)
11520 
11521 
11522  def __repr__(self):
11523  """__repr__(AllSameSingletonPredicate self) -> std::string"""
11524  return _IMP_core.AllSameSingletonPredicate___repr__(self)
11525 
11526 
11527  @staticmethod
11528  def get_from(o):
11529  return _object_cast_to_AllSameSingletonPredicate(o)
11530 
11531 AllSameSingletonPredicate_swigregister = _IMP_core.AllSameSingletonPredicate_swigregister
11532 AllSameSingletonPredicate_swigregister(AllSameSingletonPredicate)
11533 
11534 class CoinFlipSingletonPredicate(IMP.SingletonPredicate):
11535  """Proxy of C++ IMP::core::CoinFlipSingletonPredicate class."""
11536 
11537  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
11538 
11539  def __init__(self, *args):
11540  """
11541  __init__(IMP::core::CoinFlipSingletonPredicate self, double p, std::string name) -> CoinFlipSingletonPredicate
11542  __init__(IMP::core::CoinFlipSingletonPredicate self, double p) -> CoinFlipSingletonPredicate
11543  """
11544  this = _IMP_core.new_CoinFlipSingletonPredicate(*args)
11545  try:
11546  self.this.append(this)
11547  except __builtin__.Exception:
11548  self.this = this
11549 
11550  def do_get_inputs(self, arg2, arg3):
11551  """do_get_inputs(CoinFlipSingletonPredicate self, Model arg2, IMP::ParticleIndexes const & arg3) -> IMP::ModelObjectsTemp"""
11552  return _IMP_core.CoinFlipSingletonPredicate_do_get_inputs(self, arg2, arg3)
11553 
11554 
11555  def get_value(self, *args):
11556  """
11557  get_value(CoinFlipSingletonPredicate self, Particle a) -> int
11558  get_value(CoinFlipSingletonPredicate self, IMP::ParticlesTemp const & o) -> IMP::Ints
11559  """
11560  return _IMP_core.CoinFlipSingletonPredicate_get_value(self, *args)
11561 
11562 
11563  def get_value_index(self, *args):
11564  """
11565  get_value_index(CoinFlipSingletonPredicate self, Model arg2, ParticleIndex arg3) -> int
11566  get_value_index(CoinFlipSingletonPredicate self, Model m, IMP::ParticleIndexes const & o) -> IMP::Ints
11567  """
11568  return _IMP_core.CoinFlipSingletonPredicate_get_value_index(self, *args)
11569 
11570 
11571  def get_version_info(self):
11572  """get_version_info(CoinFlipSingletonPredicate self) -> VersionInfo"""
11573  return _IMP_core.CoinFlipSingletonPredicate_get_version_info(self)
11574 
11575 
11576  def __str__(self):
11577  """__str__(CoinFlipSingletonPredicate self) -> std::string"""
11578  return _IMP_core.CoinFlipSingletonPredicate___str__(self)
11579 
11580 
11581  def __repr__(self):
11582  """__repr__(CoinFlipSingletonPredicate self) -> std::string"""
11583  return _IMP_core.CoinFlipSingletonPredicate___repr__(self)
11584 
11585 
11586  @staticmethod
11587  def get_from(o):
11588  return _object_cast_to_CoinFlipSingletonPredicate(o)
11589 
11590 CoinFlipSingletonPredicate_swigregister = _IMP_core.CoinFlipSingletonPredicate_swigregister
11591 CoinFlipSingletonPredicate_swigregister(CoinFlipSingletonPredicate)
11592 
11593 class ConstantPairPredicate(IMP.PairPredicate):
11594  """Proxy of C++ IMP::core::ConstantPairPredicate class."""
11595 
11596  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
11597 
11598  def __init__(self, *args):
11599  """
11600  __init__(IMP::core::ConstantPairPredicate self, int v, std::string name) -> ConstantPairPredicate
11601  __init__(IMP::core::ConstantPairPredicate self, int v) -> ConstantPairPredicate
11602  """
11603  this = _IMP_core.new_ConstantPairPredicate(*args)
11604  try:
11605  self.this.append(this)
11606  except __builtin__.Exception:
11607  self.this = this
11608 
11609  def do_get_inputs(self, arg2, arg3):
11610  """do_get_inputs(ConstantPairPredicate self, Model arg2, IMP::ParticleIndexes const & arg3) -> IMP::ModelObjectsTemp"""
11611  return _IMP_core.ConstantPairPredicate_do_get_inputs(self, arg2, arg3)
11612 
11613 
11614  def get_value(self, *args):
11615  """
11616  get_value(ConstantPairPredicate self, IMP::ParticlePair const & a) -> int
11617  get_value(ConstantPairPredicate self, IMP::ParticlePairsTemp const & o) -> IMP::Ints
11618  """
11619  return _IMP_core.ConstantPairPredicate_get_value(self, *args)
11620 
11621 
11622  def get_value_index(self, *args):
11623  """
11624  get_value_index(ConstantPairPredicate self, Model arg2, IMP::ParticleIndexPair const & arg3) -> int
11625  get_value_index(ConstantPairPredicate self, Model m, IMP::ParticleIndexPairs const & o) -> IMP::Ints
11626  """
11627  return _IMP_core.ConstantPairPredicate_get_value_index(self, *args)
11628 
11629 
11630  def get_version_info(self):
11631  """get_version_info(ConstantPairPredicate self) -> VersionInfo"""
11632  return _IMP_core.ConstantPairPredicate_get_version_info(self)
11633 
11634 
11635  def __str__(self):
11636  """__str__(ConstantPairPredicate self) -> std::string"""
11637  return _IMP_core.ConstantPairPredicate___str__(self)
11638 
11639 
11640  def __repr__(self):
11641  """__repr__(ConstantPairPredicate self) -> std::string"""
11642  return _IMP_core.ConstantPairPredicate___repr__(self)
11643 
11644 
11645  @staticmethod
11646  def get_from(o):
11647  return _object_cast_to_ConstantPairPredicate(o)
11648 
11649 ConstantPairPredicate_swigregister = _IMP_core.ConstantPairPredicate_swigregister
11650 ConstantPairPredicate_swigregister(ConstantPairPredicate)
11651 
11652 class UnorderedTypePairPredicate(IMP.PairPredicate):
11653  """Proxy of C++ IMP::core::UnorderedTypePairPredicate class."""
11654 
11655  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
11656 
11657  def __init__(self, *args):
11658  """
11659  __init__(IMP::core::UnorderedTypePairPredicate self, std::string name) -> UnorderedTypePairPredicate
11660  __init__(IMP::core::UnorderedTypePairPredicate self) -> UnorderedTypePairPredicate
11661  """
11662  this = _IMP_core.new_UnorderedTypePairPredicate(*args)
11663  try:
11664  self.this.append(this)
11665  except __builtin__.Exception:
11666  self.this = this
11667 
11668  def do_get_inputs(self, m, pis):
11669  """do_get_inputs(UnorderedTypePairPredicate self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
11670  return _IMP_core.UnorderedTypePairPredicate_do_get_inputs(self, m, pis)
11671 
11672 
11673  def get_value(self, *args):
11674  """
11675  get_value(UnorderedTypePairPredicate self, IMP::ParticlePair const & a) -> int
11676  get_value(UnorderedTypePairPredicate self, IMP::ParticlePairsTemp const & o) -> IMP::Ints
11677  """
11678  return _IMP_core.UnorderedTypePairPredicate_get_value(self, *args)
11679 
11680 
11681  def get_value_index(self, *args):
11682  """
11683  get_value_index(UnorderedTypePairPredicate self, Model m, IMP::ParticleIndexPair const & pi) -> int
11684  get_value_index(UnorderedTypePairPredicate self, Model m, IMP::ParticleIndexPairs const & o) -> IMP::Ints
11685  """
11686  return _IMP_core.UnorderedTypePairPredicate_get_value_index(self, *args)
11687 
11688 
11689  def get_version_info(self):
11690  """get_version_info(UnorderedTypePairPredicate self) -> VersionInfo"""
11691  return _IMP_core.UnorderedTypePairPredicate_get_version_info(self)
11692 
11693 
11694  def __str__(self):
11695  """__str__(UnorderedTypePairPredicate self) -> std::string"""
11696  return _IMP_core.UnorderedTypePairPredicate___str__(self)
11697 
11698 
11699  def __repr__(self):
11700  """__repr__(UnorderedTypePairPredicate self) -> std::string"""
11701  return _IMP_core.UnorderedTypePairPredicate___repr__(self)
11702 
11703 
11704  @staticmethod
11705  def get_from(o):
11706  return _object_cast_to_UnorderedTypePairPredicate(o)
11707 
11708 UnorderedTypePairPredicate_swigregister = _IMP_core.UnorderedTypePairPredicate_swigregister
11709 UnorderedTypePairPredicate_swigregister(UnorderedTypePairPredicate)
11710 
11711 class OrderedTypePairPredicate(IMP.PairPredicate):
11712  """Proxy of C++ IMP::core::OrderedTypePairPredicate class."""
11713 
11714  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
11715 
11716  def __init__(self, *args):
11717  """
11718  __init__(IMP::core::OrderedTypePairPredicate self, std::string name) -> OrderedTypePairPredicate
11719  __init__(IMP::core::OrderedTypePairPredicate self) -> OrderedTypePairPredicate
11720  """
11721  this = _IMP_core.new_OrderedTypePairPredicate(*args)
11722  try:
11723  self.this.append(this)
11724  except __builtin__.Exception:
11725  self.this = this
11726 
11727  def do_get_inputs(self, m, pis):
11728  """do_get_inputs(OrderedTypePairPredicate self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
11729  return _IMP_core.OrderedTypePairPredicate_do_get_inputs(self, m, pis)
11730 
11731 
11732  def get_value(self, *args):
11733  """
11734  get_value(OrderedTypePairPredicate self, IMP::core::ParticleTypes const & types) -> int
11735  get_value(OrderedTypePairPredicate self, IMP::ParticlePair const & a) -> int
11736  get_value(OrderedTypePairPredicate self, IMP::ParticlePairsTemp const & o) -> IMP::Ints
11737  """
11738  return _IMP_core.OrderedTypePairPredicate_get_value(self, *args)
11739 
11740 
11741  def get_value_index(self, *args):
11742  """
11743  get_value_index(OrderedTypePairPredicate self, Model m, IMP::ParticleIndexPair const & pi) -> int
11744  get_value_index(OrderedTypePairPredicate self, Model m, IMP::ParticleIndexPairs const & o) -> IMP::Ints
11745  """
11746  return _IMP_core.OrderedTypePairPredicate_get_value_index(self, *args)
11747 
11748 
11749  def get_version_info(self):
11750  """get_version_info(OrderedTypePairPredicate self) -> VersionInfo"""
11751  return _IMP_core.OrderedTypePairPredicate_get_version_info(self)
11752 
11753 
11754  def __str__(self):
11755  """__str__(OrderedTypePairPredicate self) -> std::string"""
11756  return _IMP_core.OrderedTypePairPredicate___str__(self)
11757 
11758 
11759  def __repr__(self):
11760  """__repr__(OrderedTypePairPredicate self) -> std::string"""
11761  return _IMP_core.OrderedTypePairPredicate___repr__(self)
11762 
11763 
11764  @staticmethod
11765  def get_from(o):
11766  return _object_cast_to_OrderedTypePairPredicate(o)
11767 
11768 OrderedTypePairPredicate_swigregister = _IMP_core.OrderedTypePairPredicate_swigregister
11769 OrderedTypePairPredicate_swigregister(OrderedTypePairPredicate)
11770 
11771 class AllSamePairPredicate(IMP.PairPredicate):
11772  """Proxy of C++ IMP::core::AllSamePairPredicate class."""
11773 
11774  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
11775 
11776  def __init__(self, *args):
11777  """
11778  __init__(IMP::core::AllSamePairPredicate self, std::string name) -> AllSamePairPredicate
11779  __init__(IMP::core::AllSamePairPredicate self) -> AllSamePairPredicate
11780  """
11781  this = _IMP_core.new_AllSamePairPredicate(*args)
11782  try:
11783  self.this.append(this)
11784  except __builtin__.Exception:
11785  self.this = this
11786 
11787  def do_get_inputs(self, arg2, arg3):
11788  """do_get_inputs(AllSamePairPredicate self, Model arg2, IMP::ParticleIndexes const & arg3) -> IMP::ModelObjectsTemp"""
11789  return _IMP_core.AllSamePairPredicate_do_get_inputs(self, arg2, arg3)
11790 
11791 
11792  def get_value(self, *args):
11793  """
11794  get_value(AllSamePairPredicate self, IMP::ParticlePair const & a) -> int
11795  get_value(AllSamePairPredicate self, IMP::ParticlePairsTemp const & o) -> IMP::Ints
11796  """
11797  return _IMP_core.AllSamePairPredicate_get_value(self, *args)
11798 
11799 
11800  def get_value_index(self, *args):
11801  """
11802  get_value_index(AllSamePairPredicate self, Model m, IMP::ParticleIndexPair const & pi) -> int
11803  get_value_index(AllSamePairPredicate self, Model m, IMP::ParticleIndexPairs const & o) -> IMP::Ints
11804  """
11805  return _IMP_core.AllSamePairPredicate_get_value_index(self, *args)
11806 
11807 
11808  def get_version_info(self):
11809  """get_version_info(AllSamePairPredicate self) -> VersionInfo"""
11810  return _IMP_core.AllSamePairPredicate_get_version_info(self)
11811 
11812 
11813  def __str__(self):
11814  """__str__(AllSamePairPredicate self) -> std::string"""
11815  return _IMP_core.AllSamePairPredicate___str__(self)
11816 
11817 
11818  def __repr__(self):
11819  """__repr__(AllSamePairPredicate self) -> std::string"""
11820  return _IMP_core.AllSamePairPredicate___repr__(self)
11821 
11822 
11823  @staticmethod
11824  def get_from(o):
11825  return _object_cast_to_AllSamePairPredicate(o)
11826 
11827 AllSamePairPredicate_swigregister = _IMP_core.AllSamePairPredicate_swigregister
11828 AllSamePairPredicate_swigregister(AllSamePairPredicate)
11829 
11830 class CoinFlipPairPredicate(IMP.PairPredicate):
11831  """Proxy of C++ IMP::core::CoinFlipPairPredicate class."""
11832 
11833  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
11834 
11835  def __init__(self, *args):
11836  """
11837  __init__(IMP::core::CoinFlipPairPredicate self, double p, std::string name) -> CoinFlipPairPredicate
11838  __init__(IMP::core::CoinFlipPairPredicate self, double p) -> CoinFlipPairPredicate
11839  """
11840  this = _IMP_core.new_CoinFlipPairPredicate(*args)
11841  try:
11842  self.this.append(this)
11843  except __builtin__.Exception:
11844  self.this = this
11845 
11846  def do_get_inputs(self, arg2, arg3):
11847  """do_get_inputs(CoinFlipPairPredicate self, Model arg2, IMP::ParticleIndexes const & arg3) -> IMP::ModelObjectsTemp"""
11848  return _IMP_core.CoinFlipPairPredicate_do_get_inputs(self, arg2, arg3)
11849 
11850 
11851  def get_value(self, *args):
11852  """
11853  get_value(CoinFlipPairPredicate self, IMP::ParticlePair const & a) -> int
11854  get_value(CoinFlipPairPredicate self, IMP::ParticlePairsTemp const & o) -> IMP::Ints
11855  """
11856  return _IMP_core.CoinFlipPairPredicate_get_value(self, *args)
11857 
11858 
11859  def get_value_index(self, *args):
11860  """
11861  get_value_index(CoinFlipPairPredicate self, Model arg2, IMP::ParticleIndexPair const & arg3) -> int
11862  get_value_index(CoinFlipPairPredicate self, Model m, IMP::ParticleIndexPairs const & o) -> IMP::Ints
11863  """
11864  return _IMP_core.CoinFlipPairPredicate_get_value_index(self, *args)
11865 
11866 
11867  def get_version_info(self):
11868  """get_version_info(CoinFlipPairPredicate self) -> VersionInfo"""
11869  return _IMP_core.CoinFlipPairPredicate_get_version_info(self)
11870 
11871 
11872  def __str__(self):
11873  """__str__(CoinFlipPairPredicate self) -> std::string"""
11874  return _IMP_core.CoinFlipPairPredicate___str__(self)
11875 
11876 
11877  def __repr__(self):
11878  """__repr__(CoinFlipPairPredicate self) -> std::string"""
11879  return _IMP_core.CoinFlipPairPredicate___repr__(self)
11880 
11881 
11882  @staticmethod
11883  def get_from(o):
11884  return _object_cast_to_CoinFlipPairPredicate(o)
11885 
11886 CoinFlipPairPredicate_swigregister = _IMP_core.CoinFlipPairPredicate_swigregister
11887 CoinFlipPairPredicate_swigregister(CoinFlipPairPredicate)
11888 
11889 class ConstantTripletPredicate(IMP.TripletPredicate):
11890  """Proxy of C++ IMP::core::ConstantTripletPredicate class."""
11891 
11892  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
11893 
11894  def __init__(self, *args):
11895  """
11896  __init__(IMP::core::ConstantTripletPredicate self, int v, std::string name) -> ConstantTripletPredicate
11897  __init__(IMP::core::ConstantTripletPredicate self, int v) -> ConstantTripletPredicate
11898  """
11899  this = _IMP_core.new_ConstantTripletPredicate(*args)
11900  try:
11901  self.this.append(this)
11902  except __builtin__.Exception:
11903  self.this = this
11904 
11905  def do_get_inputs(self, arg2, arg3):
11906  """do_get_inputs(ConstantTripletPredicate self, Model arg2, IMP::ParticleIndexes const & arg3) -> IMP::ModelObjectsTemp"""
11907  return _IMP_core.ConstantTripletPredicate_do_get_inputs(self, arg2, arg3)
11908 
11909 
11910  def get_value(self, *args):
11911  """
11912  get_value(ConstantTripletPredicate self, IMP::ParticleTriplet const & a) -> int
11913  get_value(ConstantTripletPredicate self, IMP::ParticleTripletsTemp const & o) -> IMP::Ints
11914  """
11915  return _IMP_core.ConstantTripletPredicate_get_value(self, *args)
11916 
11917 
11918  def get_value_index(self, *args):
11919  """
11920  get_value_index(ConstantTripletPredicate self, Model arg2, IMP::ParticleIndexTriplet const & arg3) -> int
11921  get_value_index(ConstantTripletPredicate self, Model m, IMP::ParticleIndexTriplets const & o) -> IMP::Ints
11922  """
11923  return _IMP_core.ConstantTripletPredicate_get_value_index(self, *args)
11924 
11925 
11926  def get_version_info(self):
11927  """get_version_info(ConstantTripletPredicate self) -> VersionInfo"""
11928  return _IMP_core.ConstantTripletPredicate_get_version_info(self)
11929 
11930 
11931  def __str__(self):
11932  """__str__(ConstantTripletPredicate self) -> std::string"""
11933  return _IMP_core.ConstantTripletPredicate___str__(self)
11934 
11935 
11936  def __repr__(self):
11937  """__repr__(ConstantTripletPredicate self) -> std::string"""
11938  return _IMP_core.ConstantTripletPredicate___repr__(self)
11939 
11940 
11941  @staticmethod
11942  def get_from(o):
11943  return _object_cast_to_ConstantTripletPredicate(o)
11944 
11945 ConstantTripletPredicate_swigregister = _IMP_core.ConstantTripletPredicate_swigregister
11946 ConstantTripletPredicate_swigregister(ConstantTripletPredicate)
11947 
11948 class UnorderedTypeTripletPredicate(IMP.TripletPredicate):
11949  """Proxy of C++ IMP::core::UnorderedTypeTripletPredicate class."""
11950 
11951  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
11952 
11953  def __init__(self, *args):
11954  """
11955  __init__(IMP::core::UnorderedTypeTripletPredicate self, std::string name) -> UnorderedTypeTripletPredicate
11956  __init__(IMP::core::UnorderedTypeTripletPredicate self) -> UnorderedTypeTripletPredicate
11957  """
11958  this = _IMP_core.new_UnorderedTypeTripletPredicate(*args)
11959  try:
11960  self.this.append(this)
11961  except __builtin__.Exception:
11962  self.this = this
11963 
11964  def do_get_inputs(self, m, pis):
11965  """do_get_inputs(UnorderedTypeTripletPredicate self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
11966  return _IMP_core.UnorderedTypeTripletPredicate_do_get_inputs(self, m, pis)
11967 
11968 
11969  def get_value(self, *args):
11970  """
11971  get_value(UnorderedTypeTripletPredicate self, IMP::ParticleTriplet const & a) -> int
11972  get_value(UnorderedTypeTripletPredicate self, IMP::ParticleTripletsTemp const & o) -> IMP::Ints
11973  """
11974  return _IMP_core.UnorderedTypeTripletPredicate_get_value(self, *args)
11975 
11976 
11977  def get_value_index(self, *args):
11978  """
11979  get_value_index(UnorderedTypeTripletPredicate self, Model m, IMP::ParticleIndexTriplet const & pi) -> int
11980  get_value_index(UnorderedTypeTripletPredicate self, Model m, IMP::ParticleIndexTriplets const & o) -> IMP::Ints
11981  """
11982  return _IMP_core.UnorderedTypeTripletPredicate_get_value_index(self, *args)
11983 
11984 
11985  def get_version_info(self):
11986  """get_version_info(UnorderedTypeTripletPredicate self) -> VersionInfo"""
11987  return _IMP_core.UnorderedTypeTripletPredicate_get_version_info(self)
11988 
11989 
11990  def __str__(self):
11991  """__str__(UnorderedTypeTripletPredicate self) -> std::string"""
11992  return _IMP_core.UnorderedTypeTripletPredicate___str__(self)
11993 
11994 
11995  def __repr__(self):
11996  """__repr__(UnorderedTypeTripletPredicate self) -> std::string"""
11997  return _IMP_core.UnorderedTypeTripletPredicate___repr__(self)
11998 
11999 
12000  @staticmethod
12001  def get_from(o):
12002  return _object_cast_to_UnorderedTypeTripletPredicate(o)
12003 
12004 UnorderedTypeTripletPredicate_swigregister = _IMP_core.UnorderedTypeTripletPredicate_swigregister
12005 UnorderedTypeTripletPredicate_swigregister(UnorderedTypeTripletPredicate)
12006 
12007 class OrderedTypeTripletPredicate(IMP.TripletPredicate):
12008  """Proxy of C++ IMP::core::OrderedTypeTripletPredicate class."""
12009 
12010  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
12011 
12012  def __init__(self, *args):
12013  """
12014  __init__(IMP::core::OrderedTypeTripletPredicate self, std::string name) -> OrderedTypeTripletPredicate
12015  __init__(IMP::core::OrderedTypeTripletPredicate self) -> OrderedTypeTripletPredicate
12016  """
12017  this = _IMP_core.new_OrderedTypeTripletPredicate(*args)
12018  try:
12019  self.this.append(this)
12020  except __builtin__.Exception:
12021  self.this = this
12022 
12023  def do_get_inputs(self, m, pis):
12024  """do_get_inputs(OrderedTypeTripletPredicate self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
12025  return _IMP_core.OrderedTypeTripletPredicate_do_get_inputs(self, m, pis)
12026 
12027 
12028  def get_value(self, *args):
12029  """
12030  get_value(OrderedTypeTripletPredicate self, IMP::core::ParticleTypes const & types) -> int
12031  get_value(OrderedTypeTripletPredicate self, IMP::ParticleTriplet const & a) -> int
12032  get_value(OrderedTypeTripletPredicate self, IMP::ParticleTripletsTemp const & o) -> IMP::Ints
12033  """
12034  return _IMP_core.OrderedTypeTripletPredicate_get_value(self, *args)
12035 
12036 
12037  def get_value_index(self, *args):
12038  """
12039  get_value_index(OrderedTypeTripletPredicate self, Model m, IMP::ParticleIndexTriplet const & pi) -> int
12040  get_value_index(OrderedTypeTripletPredicate self, Model m, IMP::ParticleIndexTriplets const & o) -> IMP::Ints
12041  """
12042  return _IMP_core.OrderedTypeTripletPredicate_get_value_index(self, *args)
12043 
12044 
12045  def get_version_info(self):
12046  """get_version_info(OrderedTypeTripletPredicate self) -> VersionInfo"""
12047  return _IMP_core.OrderedTypeTripletPredicate_get_version_info(self)
12048 
12049 
12050  def __str__(self):
12051  """__str__(OrderedTypeTripletPredicate self) -> std::string"""
12052  return _IMP_core.OrderedTypeTripletPredicate___str__(self)
12053 
12054 
12055  def __repr__(self):
12056  """__repr__(OrderedTypeTripletPredicate self) -> std::string"""
12057  return _IMP_core.OrderedTypeTripletPredicate___repr__(self)
12058 
12059 
12060  @staticmethod
12061  def get_from(o):
12062  return _object_cast_to_OrderedTypeTripletPredicate(o)
12063 
12064 OrderedTypeTripletPredicate_swigregister = _IMP_core.OrderedTypeTripletPredicate_swigregister
12065 OrderedTypeTripletPredicate_swigregister(OrderedTypeTripletPredicate)
12066 
12067 class AllSameTripletPredicate(IMP.TripletPredicate):
12068  """Proxy of C++ IMP::core::AllSameTripletPredicate class."""
12069 
12070  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
12071 
12072  def __init__(self, *args):
12073  """
12074  __init__(IMP::core::AllSameTripletPredicate self, std::string name) -> AllSameTripletPredicate
12075  __init__(IMP::core::AllSameTripletPredicate self) -> AllSameTripletPredicate
12076  """
12077  this = _IMP_core.new_AllSameTripletPredicate(*args)
12078  try:
12079  self.this.append(this)
12080  except __builtin__.Exception:
12081  self.this = this
12082 
12083  def do_get_inputs(self, arg2, arg3):
12084  """do_get_inputs(AllSameTripletPredicate self, Model arg2, IMP::ParticleIndexes const & arg3) -> IMP::ModelObjectsTemp"""
12085  return _IMP_core.AllSameTripletPredicate_do_get_inputs(self, arg2, arg3)
12086 
12087 
12088  def get_value(self, *args):
12089  """
12090  get_value(AllSameTripletPredicate self, IMP::ParticleTriplet const & a) -> int
12091  get_value(AllSameTripletPredicate self, IMP::ParticleTripletsTemp const & o) -> IMP::Ints
12092  """
12093  return _IMP_core.AllSameTripletPredicate_get_value(self, *args)
12094 
12095 
12096  def get_value_index(self, *args):
12097  """
12098  get_value_index(AllSameTripletPredicate self, Model m, IMP::ParticleIndexTriplet const & pi) -> int
12099  get_value_index(AllSameTripletPredicate self, Model m, IMP::ParticleIndexTriplets const & o) -> IMP::Ints
12100  """
12101  return _IMP_core.AllSameTripletPredicate_get_value_index(self, *args)
12102 
12103 
12104  def get_version_info(self):
12105  """get_version_info(AllSameTripletPredicate self) -> VersionInfo"""
12106  return _IMP_core.AllSameTripletPredicate_get_version_info(self)
12107 
12108 
12109  def __str__(self):
12110  """__str__(AllSameTripletPredicate self) -> std::string"""
12111  return _IMP_core.AllSameTripletPredicate___str__(self)
12112 
12113 
12114  def __repr__(self):
12115  """__repr__(AllSameTripletPredicate self) -> std::string"""
12116  return _IMP_core.AllSameTripletPredicate___repr__(self)
12117 
12118 
12119  @staticmethod
12120  def get_from(o):
12121  return _object_cast_to_AllSameTripletPredicate(o)
12122 
12123 AllSameTripletPredicate_swigregister = _IMP_core.AllSameTripletPredicate_swigregister
12124 AllSameTripletPredicate_swigregister(AllSameTripletPredicate)
12125 
12126 class CoinFlipTripletPredicate(IMP.TripletPredicate):
12127  """Proxy of C++ IMP::core::CoinFlipTripletPredicate class."""
12128 
12129  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
12130 
12131  def __init__(self, *args):
12132  """
12133  __init__(IMP::core::CoinFlipTripletPredicate self, double p, std::string name) -> CoinFlipTripletPredicate
12134  __init__(IMP::core::CoinFlipTripletPredicate self, double p) -> CoinFlipTripletPredicate
12135  """
12136  this = _IMP_core.new_CoinFlipTripletPredicate(*args)
12137  try:
12138  self.this.append(this)
12139  except __builtin__.Exception:
12140  self.this = this
12141 
12142  def do_get_inputs(self, arg2, arg3):
12143  """do_get_inputs(CoinFlipTripletPredicate self, Model arg2, IMP::ParticleIndexes const & arg3) -> IMP::ModelObjectsTemp"""
12144  return _IMP_core.CoinFlipTripletPredicate_do_get_inputs(self, arg2, arg3)
12145 
12146 
12147  def get_value(self, *args):
12148  """
12149  get_value(CoinFlipTripletPredicate self, IMP::ParticleTriplet const & a) -> int
12150  get_value(CoinFlipTripletPredicate self, IMP::ParticleTripletsTemp const & o) -> IMP::Ints
12151  """
12152  return _IMP_core.CoinFlipTripletPredicate_get_value(self, *args)
12153 
12154 
12155  def get_value_index(self, *args):
12156  """
12157  get_value_index(CoinFlipTripletPredicate self, Model arg2, IMP::ParticleIndexTriplet const & arg3) -> int
12158  get_value_index(CoinFlipTripletPredicate self, Model m, IMP::ParticleIndexTriplets const & o) -> IMP::Ints
12159  """
12160  return _IMP_core.CoinFlipTripletPredicate_get_value_index(self, *args)
12161 
12162 
12163  def get_version_info(self):
12164  """get_version_info(CoinFlipTripletPredicate self) -> VersionInfo"""
12165  return _IMP_core.CoinFlipTripletPredicate_get_version_info(self)
12166 
12167 
12168  def __str__(self):
12169  """__str__(CoinFlipTripletPredicate self) -> std::string"""
12170  return _IMP_core.CoinFlipTripletPredicate___str__(self)
12171 
12172 
12173  def __repr__(self):
12174  """__repr__(CoinFlipTripletPredicate self) -> std::string"""
12175  return _IMP_core.CoinFlipTripletPredicate___repr__(self)
12176 
12177 
12178  @staticmethod
12179  def get_from(o):
12180  return _object_cast_to_CoinFlipTripletPredicate(o)
12181 
12182 CoinFlipTripletPredicate_swigregister = _IMP_core.CoinFlipTripletPredicate_swigregister
12183 CoinFlipTripletPredicate_swigregister(CoinFlipTripletPredicate)
12184 
12185 class ConstantQuadPredicate(IMP.QuadPredicate):
12186  """Proxy of C++ IMP::core::ConstantQuadPredicate class."""
12187 
12188  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
12189 
12190  def __init__(self, *args):
12191  """
12192  __init__(IMP::core::ConstantQuadPredicate self, int v, std::string name) -> ConstantQuadPredicate
12193  __init__(IMP::core::ConstantQuadPredicate self, int v) -> ConstantQuadPredicate
12194  """
12195  this = _IMP_core.new_ConstantQuadPredicate(*args)
12196  try:
12197  self.this.append(this)
12198  except __builtin__.Exception:
12199  self.this = this
12200 
12201  def do_get_inputs(self, arg2, arg3):
12202  """do_get_inputs(ConstantQuadPredicate self, Model arg2, IMP::ParticleIndexes const & arg3) -> IMP::ModelObjectsTemp"""
12203  return _IMP_core.ConstantQuadPredicate_do_get_inputs(self, arg2, arg3)
12204 
12205 
12206  def get_value(self, *args):
12207  """
12208  get_value(ConstantQuadPredicate self, IMP::ParticleQuad const & a) -> int
12209  get_value(ConstantQuadPredicate self, IMP::ParticleQuadsTemp const & o) -> IMP::Ints
12210  """
12211  return _IMP_core.ConstantQuadPredicate_get_value(self, *args)
12212 
12213 
12214  def get_value_index(self, *args):
12215  """
12216  get_value_index(ConstantQuadPredicate self, Model arg2, IMP::ParticleIndexQuad const & arg3) -> int
12217  get_value_index(ConstantQuadPredicate self, Model m, IMP::ParticleIndexQuads const & o) -> IMP::Ints
12218  """
12219  return _IMP_core.ConstantQuadPredicate_get_value_index(self, *args)
12220 
12221 
12222  def get_version_info(self):
12223  """get_version_info(ConstantQuadPredicate self) -> VersionInfo"""
12224  return _IMP_core.ConstantQuadPredicate_get_version_info(self)
12225 
12226 
12227  def __str__(self):
12228  """__str__(ConstantQuadPredicate self) -> std::string"""
12229  return _IMP_core.ConstantQuadPredicate___str__(self)
12230 
12231 
12232  def __repr__(self):
12233  """__repr__(ConstantQuadPredicate self) -> std::string"""
12234  return _IMP_core.ConstantQuadPredicate___repr__(self)
12235 
12236 
12237  @staticmethod
12238  def get_from(o):
12239  return _object_cast_to_ConstantQuadPredicate(o)
12240 
12241 ConstantQuadPredicate_swigregister = _IMP_core.ConstantQuadPredicate_swigregister
12242 ConstantQuadPredicate_swigregister(ConstantQuadPredicate)
12243 
12244 class UnorderedTypeQuadPredicate(IMP.QuadPredicate):
12245  """Proxy of C++ IMP::core::UnorderedTypeQuadPredicate class."""
12246 
12247  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
12248 
12249  def __init__(self, *args):
12250  """
12251  __init__(IMP::core::UnorderedTypeQuadPredicate self, std::string name) -> UnorderedTypeQuadPredicate
12252  __init__(IMP::core::UnorderedTypeQuadPredicate self) -> UnorderedTypeQuadPredicate
12253  """
12254  this = _IMP_core.new_UnorderedTypeQuadPredicate(*args)
12255  try:
12256  self.this.append(this)
12257  except __builtin__.Exception:
12258  self.this = this
12259 
12260  def do_get_inputs(self, m, pis):
12261  """do_get_inputs(UnorderedTypeQuadPredicate self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
12262  return _IMP_core.UnorderedTypeQuadPredicate_do_get_inputs(self, m, pis)
12263 
12264 
12265  def get_value(self, *args):
12266  """
12267  get_value(UnorderedTypeQuadPredicate self, IMP::ParticleQuad const & a) -> int
12268  get_value(UnorderedTypeQuadPredicate self, IMP::ParticleQuadsTemp const & o) -> IMP::Ints
12269  """
12270  return _IMP_core.UnorderedTypeQuadPredicate_get_value(self, *args)
12271 
12272 
12273  def get_value_index(self, *args):
12274  """
12275  get_value_index(UnorderedTypeQuadPredicate self, Model m, IMP::ParticleIndexQuad const & pi) -> int
12276  get_value_index(UnorderedTypeQuadPredicate self, Model m, IMP::ParticleIndexQuads const & o) -> IMP::Ints
12277  """
12278  return _IMP_core.UnorderedTypeQuadPredicate_get_value_index(self, *args)
12279 
12280 
12281  def get_version_info(self):
12282  """get_version_info(UnorderedTypeQuadPredicate self) -> VersionInfo"""
12283  return _IMP_core.UnorderedTypeQuadPredicate_get_version_info(self)
12284 
12285 
12286  def __str__(self):
12287  """__str__(UnorderedTypeQuadPredicate self) -> std::string"""
12288  return _IMP_core.UnorderedTypeQuadPredicate___str__(self)
12289 
12290 
12291  def __repr__(self):
12292  """__repr__(UnorderedTypeQuadPredicate self) -> std::string"""
12293  return _IMP_core.UnorderedTypeQuadPredicate___repr__(self)
12294 
12295 
12296  @staticmethod
12297  def get_from(o):
12298  return _object_cast_to_UnorderedTypeQuadPredicate(o)
12299 
12300 UnorderedTypeQuadPredicate_swigregister = _IMP_core.UnorderedTypeQuadPredicate_swigregister
12301 UnorderedTypeQuadPredicate_swigregister(UnorderedTypeQuadPredicate)
12302 
12303 class OrderedTypeQuadPredicate(IMP.QuadPredicate):
12304  """Proxy of C++ IMP::core::OrderedTypeQuadPredicate class."""
12305 
12306  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
12307 
12308  def __init__(self, *args):
12309  """
12310  __init__(IMP::core::OrderedTypeQuadPredicate self, std::string name) -> OrderedTypeQuadPredicate
12311  __init__(IMP::core::OrderedTypeQuadPredicate self) -> OrderedTypeQuadPredicate
12312  """
12313  this = _IMP_core.new_OrderedTypeQuadPredicate(*args)
12314  try:
12315  self.this.append(this)
12316  except __builtin__.Exception:
12317  self.this = this
12318 
12319  def do_get_inputs(self, m, pis):
12320  """do_get_inputs(OrderedTypeQuadPredicate self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
12321  return _IMP_core.OrderedTypeQuadPredicate_do_get_inputs(self, m, pis)
12322 
12323 
12324  def get_value(self, *args):
12325  """
12326  get_value(OrderedTypeQuadPredicate self, IMP::core::ParticleTypes const & types) -> int
12327  get_value(OrderedTypeQuadPredicate self, IMP::ParticleQuad const & a) -> int
12328  get_value(OrderedTypeQuadPredicate self, IMP::ParticleQuadsTemp const & o) -> IMP::Ints
12329  """
12330  return _IMP_core.OrderedTypeQuadPredicate_get_value(self, *args)
12331 
12332 
12333  def get_value_index(self, *args):
12334  """
12335  get_value_index(OrderedTypeQuadPredicate self, Model m, IMP::ParticleIndexQuad const & pi) -> int
12336  get_value_index(OrderedTypeQuadPredicate self, Model m, IMP::ParticleIndexQuads const & o) -> IMP::Ints
12337  """
12338  return _IMP_core.OrderedTypeQuadPredicate_get_value_index(self, *args)
12339 
12340 
12341  def get_version_info(self):
12342  """get_version_info(OrderedTypeQuadPredicate self) -> VersionInfo"""
12343  return _IMP_core.OrderedTypeQuadPredicate_get_version_info(self)
12344 
12345 
12346  def __str__(self):
12347  """__str__(OrderedTypeQuadPredicate self) -> std::string"""
12348  return _IMP_core.OrderedTypeQuadPredicate___str__(self)
12349 
12350 
12351  def __repr__(self):
12352  """__repr__(OrderedTypeQuadPredicate self) -> std::string"""
12353  return _IMP_core.OrderedTypeQuadPredicate___repr__(self)
12354 
12355 
12356  @staticmethod
12357  def get_from(o):
12358  return _object_cast_to_OrderedTypeQuadPredicate(o)
12359 
12360 OrderedTypeQuadPredicate_swigregister = _IMP_core.OrderedTypeQuadPredicate_swigregister
12361 OrderedTypeQuadPredicate_swigregister(OrderedTypeQuadPredicate)
12362 
12363 class AllSameQuadPredicate(IMP.QuadPredicate):
12364  """Proxy of C++ IMP::core::AllSameQuadPredicate class."""
12365 
12366  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
12367 
12368  def __init__(self, *args):
12369  """
12370  __init__(IMP::core::AllSameQuadPredicate self, std::string name) -> AllSameQuadPredicate
12371  __init__(IMP::core::AllSameQuadPredicate self) -> AllSameQuadPredicate
12372  """
12373  this = _IMP_core.new_AllSameQuadPredicate(*args)
12374  try:
12375  self.this.append(this)
12376  except __builtin__.Exception:
12377  self.this = this
12378 
12379  def do_get_inputs(self, arg2, arg3):
12380  """do_get_inputs(AllSameQuadPredicate self, Model arg2, IMP::ParticleIndexes const & arg3) -> IMP::ModelObjectsTemp"""
12381  return _IMP_core.AllSameQuadPredicate_do_get_inputs(self, arg2, arg3)
12382 
12383 
12384  def get_value(self, *args):
12385  """
12386  get_value(AllSameQuadPredicate self, IMP::ParticleQuad const & a) -> int
12387  get_value(AllSameQuadPredicate self, IMP::ParticleQuadsTemp const & o) -> IMP::Ints
12388  """
12389  return _IMP_core.AllSameQuadPredicate_get_value(self, *args)
12390 
12391 
12392  def get_value_index(self, *args):
12393  """
12394  get_value_index(AllSameQuadPredicate self, Model m, IMP::ParticleIndexQuad const & pi) -> int
12395  get_value_index(AllSameQuadPredicate self, Model m, IMP::ParticleIndexQuads const & o) -> IMP::Ints
12396  """
12397  return _IMP_core.AllSameQuadPredicate_get_value_index(self, *args)
12398 
12399 
12400  def get_version_info(self):
12401  """get_version_info(AllSameQuadPredicate self) -> VersionInfo"""
12402  return _IMP_core.AllSameQuadPredicate_get_version_info(self)
12403 
12404 
12405  def __str__(self):
12406  """__str__(AllSameQuadPredicate self) -> std::string"""
12407  return _IMP_core.AllSameQuadPredicate___str__(self)
12408 
12409 
12410  def __repr__(self):
12411  """__repr__(AllSameQuadPredicate self) -> std::string"""
12412  return _IMP_core.AllSameQuadPredicate___repr__(self)
12413 
12414 
12415  @staticmethod
12416  def get_from(o):
12417  return _object_cast_to_AllSameQuadPredicate(o)
12418 
12419 AllSameQuadPredicate_swigregister = _IMP_core.AllSameQuadPredicate_swigregister
12420 AllSameQuadPredicate_swigregister(AllSameQuadPredicate)
12421 
12422 class CoinFlipQuadPredicate(IMP.QuadPredicate):
12423  """Proxy of C++ IMP::core::CoinFlipQuadPredicate class."""
12424 
12425  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
12426 
12427  def __init__(self, *args):
12428  """
12429  __init__(IMP::core::CoinFlipQuadPredicate self, double p, std::string name) -> CoinFlipQuadPredicate
12430  __init__(IMP::core::CoinFlipQuadPredicate self, double p) -> CoinFlipQuadPredicate
12431  """
12432  this = _IMP_core.new_CoinFlipQuadPredicate(*args)
12433  try:
12434  self.this.append(this)
12435  except __builtin__.Exception:
12436  self.this = this
12437 
12438  def do_get_inputs(self, arg2, arg3):
12439  """do_get_inputs(CoinFlipQuadPredicate self, Model arg2, IMP::ParticleIndexes const & arg3) -> IMP::ModelObjectsTemp"""
12440  return _IMP_core.CoinFlipQuadPredicate_do_get_inputs(self, arg2, arg3)
12441 
12442 
12443  def get_value(self, *args):
12444  """
12445  get_value(CoinFlipQuadPredicate self, IMP::ParticleQuad const & a) -> int
12446  get_value(CoinFlipQuadPredicate self, IMP::ParticleQuadsTemp const & o) -> IMP::Ints
12447  """
12448  return _IMP_core.CoinFlipQuadPredicate_get_value(self, *args)
12449 
12450 
12451  def get_value_index(self, *args):
12452  """
12453  get_value_index(CoinFlipQuadPredicate self, Model arg2, IMP::ParticleIndexQuad const & arg3) -> int
12454  get_value_index(CoinFlipQuadPredicate self, Model m, IMP::ParticleIndexQuads const & o) -> IMP::Ints
12455  """
12456  return _IMP_core.CoinFlipQuadPredicate_get_value_index(self, *args)
12457 
12458 
12459  def get_version_info(self):
12460  """get_version_info(CoinFlipQuadPredicate self) -> VersionInfo"""
12461  return _IMP_core.CoinFlipQuadPredicate_get_version_info(self)
12462 
12463 
12464  def __str__(self):
12465  """__str__(CoinFlipQuadPredicate self) -> std::string"""
12466  return _IMP_core.CoinFlipQuadPredicate___str__(self)
12467 
12468 
12469  def __repr__(self):
12470  """__repr__(CoinFlipQuadPredicate self) -> std::string"""
12471  return _IMP_core.CoinFlipQuadPredicate___repr__(self)
12472 
12473 
12474  @staticmethod
12475  def get_from(o):
12476  return _object_cast_to_CoinFlipQuadPredicate(o)
12477 
12478 CoinFlipQuadPredicate_swigregister = _IMP_core.CoinFlipQuadPredicate_swigregister
12479 CoinFlipQuadPredicate_swigregister(CoinFlipQuadPredicate)
12480 
12481 class InBoundingBox3DSingletonPredicate(IMP.SingletonPredicate):
12482  """Proxy of C++ IMP::core::InBoundingBox3DSingletonPredicate class."""
12483 
12484  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
12485 
12486  def __init__(self, *args):
12487  """
12488  __init__(IMP::core::InBoundingBox3DSingletonPredicate self, BoundingBox3D bb, std::string name) -> InBoundingBox3DSingletonPredicate
12489  __init__(IMP::core::InBoundingBox3DSingletonPredicate self, BoundingBox3D bb) -> InBoundingBox3DSingletonPredicate
12490  """
12491  this = _IMP_core.new_InBoundingBox3DSingletonPredicate(*args)
12492  try:
12493  self.this.append(this)
12494  except __builtin__.Exception:
12495  self.this = this
12496 
12497  def do_get_inputs(self, m, pi):
12498  """do_get_inputs(InBoundingBox3DSingletonPredicate self, Model m, IMP::ParticleIndexes const & pi) -> IMP::ModelObjectsTemp"""
12499  return _IMP_core.InBoundingBox3DSingletonPredicate_do_get_inputs(self, m, pi)
12500 
12501 
12502  def get_value(self, *args):
12503  """
12504  get_value(InBoundingBox3DSingletonPredicate self, Particle a) -> int
12505  get_value(InBoundingBox3DSingletonPredicate self, IMP::ParticlesTemp const & o) -> IMP::Ints
12506  """
12507  return _IMP_core.InBoundingBox3DSingletonPredicate_get_value(self, *args)
12508 
12509 
12510  def get_value_index(self, *args):
12511  """
12512  get_value_index(InBoundingBox3DSingletonPredicate self, Model m, ParticleIndex pi) -> int
12513  get_value_index(InBoundingBox3DSingletonPredicate self, Model m, IMP::ParticleIndexes const & o) -> IMP::Ints
12514  """
12515  return _IMP_core.InBoundingBox3DSingletonPredicate_get_value_index(self, *args)
12516 
12517 
12518  def get_version_info(self):
12519  """get_version_info(InBoundingBox3DSingletonPredicate self) -> VersionInfo"""
12520  return _IMP_core.InBoundingBox3DSingletonPredicate_get_version_info(self)
12521 
12522 
12523  def __str__(self):
12524  """__str__(InBoundingBox3DSingletonPredicate self) -> std::string"""
12525  return _IMP_core.InBoundingBox3DSingletonPredicate___str__(self)
12526 
12527 
12528  def __repr__(self):
12529  """__repr__(InBoundingBox3DSingletonPredicate self) -> std::string"""
12530  return _IMP_core.InBoundingBox3DSingletonPredicate___repr__(self)
12531 
12532 
12533  @staticmethod
12534  def get_from(o):
12535  return _object_cast_to_InBoundingBox3DSingletonPredicate(o)
12536 
12537 InBoundingBox3DSingletonPredicate_swigregister = _IMP_core.InBoundingBox3DSingletonPredicate_swigregister
12538 InBoundingBox3DSingletonPredicate_swigregister(InBoundingBox3DSingletonPredicate)
12539 
12540 class AttributeSingletonPredicate(IMP.SingletonPredicate):
12541  """Proxy of C++ IMP::core::AttributeSingletonPredicate class."""
12542 
12543  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
12544 
12545  def __init__(self, *args):
12546  """
12547  __init__(IMP::core::AttributeSingletonPredicate self, IntKey bb, std::string name) -> AttributeSingletonPredicate
12548  __init__(IMP::core::AttributeSingletonPredicate self, IntKey bb) -> AttributeSingletonPredicate
12549  """
12550  this = _IMP_core.new_AttributeSingletonPredicate(*args)
12551  try:
12552  self.this.append(this)
12553  except __builtin__.Exception:
12554  self.this = this
12555 
12556  def do_get_inputs(self, m, pi):
12557  """do_get_inputs(AttributeSingletonPredicate self, Model m, IMP::ParticleIndexes const & pi) -> IMP::ModelObjectsTemp"""
12558  return _IMP_core.AttributeSingletonPredicate_do_get_inputs(self, m, pi)
12559 
12560 
12561  def get_value(self, *args):
12562  """
12563  get_value(AttributeSingletonPredicate self, Particle a) -> int
12564  get_value(AttributeSingletonPredicate self, IMP::ParticlesTemp const & o) -> IMP::Ints
12565  """
12566  return _IMP_core.AttributeSingletonPredicate_get_value(self, *args)
12567 
12568 
12569  def get_value_index(self, *args):
12570  """
12571  get_value_index(AttributeSingletonPredicate self, Model m, ParticleIndex pi) -> int
12572  get_value_index(AttributeSingletonPredicate self, Model m, IMP::ParticleIndexes const & o) -> IMP::Ints
12573  """
12574  return _IMP_core.AttributeSingletonPredicate_get_value_index(self, *args)
12575 
12576 
12577  def get_version_info(self):
12578  """get_version_info(AttributeSingletonPredicate self) -> VersionInfo"""
12579  return _IMP_core.AttributeSingletonPredicate_get_version_info(self)
12580 
12581 
12582  def __str__(self):
12583  """__str__(AttributeSingletonPredicate self) -> std::string"""
12584  return _IMP_core.AttributeSingletonPredicate___str__(self)
12585 
12586 
12587  def __repr__(self):
12588  """__repr__(AttributeSingletonPredicate self) -> std::string"""
12589  return _IMP_core.AttributeSingletonPredicate___repr__(self)
12590 
12591 
12592  @staticmethod
12593  def get_from(o):
12594  return _object_cast_to_AttributeSingletonPredicate(o)
12595 
12596 AttributeSingletonPredicate_swigregister = _IMP_core.AttributeSingletonPredicate_swigregister
12597 AttributeSingletonPredicate_swigregister(AttributeSingletonPredicate)
12598 
12599 class IsCollisionPairPredicate(IMP.PairPredicate):
12600  """Proxy of C++ IMP::core::IsCollisionPairPredicate class."""
12601 
12602  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
12603 
12604  def __init__(self, *args):
12605  """
12606  __init__(IMP::core::IsCollisionPairPredicate self, std::string name) -> IsCollisionPairPredicate
12607  __init__(IMP::core::IsCollisionPairPredicate self) -> IsCollisionPairPredicate
12608  """
12609  this = _IMP_core.new_IsCollisionPairPredicate(*args)
12610  try:
12611  self.this.append(this)
12612  except __builtin__.Exception:
12613  self.this = this
12614 
12615  def do_get_inputs(self, m, pi):
12616  """do_get_inputs(IsCollisionPairPredicate self, Model m, IMP::ParticleIndexes const & pi) -> IMP::ModelObjectsTemp"""
12617  return _IMP_core.IsCollisionPairPredicate_do_get_inputs(self, m, pi)
12618 
12619 
12620  def get_value(self, *args):
12621  """
12622  get_value(IsCollisionPairPredicate self, IMP::ParticlePair const & a) -> int
12623  get_value(IsCollisionPairPredicate self, IMP::ParticlePairsTemp const & o) -> IMP::Ints
12624  """
12625  return _IMP_core.IsCollisionPairPredicate_get_value(self, *args)
12626 
12627 
12628  def get_value_index(self, *args):
12629  """
12630  get_value_index(IsCollisionPairPredicate self, Model m, IMP::ParticleIndexPair const & pi) -> int
12631  get_value_index(IsCollisionPairPredicate self, Model m, IMP::ParticleIndexPairs const & o) -> IMP::Ints
12632  """
12633  return _IMP_core.IsCollisionPairPredicate_get_value_index(self, *args)
12634 
12635 
12636  def get_version_info(self):
12637  """get_version_info(IsCollisionPairPredicate self) -> VersionInfo"""
12638  return _IMP_core.IsCollisionPairPredicate_get_version_info(self)
12639 
12640 
12641  def __str__(self):
12642  """__str__(IsCollisionPairPredicate self) -> std::string"""
12643  return _IMP_core.IsCollisionPairPredicate___str__(self)
12644 
12645 
12646  def __repr__(self):
12647  """__repr__(IsCollisionPairPredicate self) -> std::string"""
12648  return _IMP_core.IsCollisionPairPredicate___repr__(self)
12649 
12650 
12651  @staticmethod
12652  def get_from(o):
12653  return _object_cast_to_IsCollisionPairPredicate(o)
12654 
12655 IsCollisionPairPredicate_swigregister = _IMP_core.IsCollisionPairPredicate_swigregister
12656 IsCollisionPairPredicate_swigregister(IsCollisionPairPredicate)
12657 
12658 class AngleRestraint(TripletRestraint):
12659  """Proxy of C++ IMP::core::AngleRestraint class."""
12660 
12661  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
12662 
12663  def __init__(self, m, score_func, p1, p2, p3):
12664  """__init__(IMP::core::AngleRestraint self, Model m, UnaryFunction score_func, _ParticleIndexAdaptor p1, _ParticleIndexAdaptor p2, _ParticleIndexAdaptor p3) -> AngleRestraint"""
12665  this = _IMP_core.new_AngleRestraint(m, score_func, p1, p2, p3)
12666  try:
12667  self.this.append(this)
12668  except __builtin__.Exception:
12669  self.this = this
12670 
12671  def __str__(self):
12672  """__str__(AngleRestraint self) -> std::string"""
12673  return _IMP_core.AngleRestraint___str__(self)
12674 
12675 
12676  def __repr__(self):
12677  """__repr__(AngleRestraint self) -> std::string"""
12678  return _IMP_core.AngleRestraint___repr__(self)
12679 
12680 
12681  @staticmethod
12682  def get_from(o):
12683  return _object_cast_to_AngleRestraint(o)
12684 
12685 AngleRestraint_swigregister = _IMP_core.AngleRestraint_swigregister
12686 AngleRestraint_swigregister(AngleRestraint)
12687 
12688 class RigidBodyMover(MonteCarloMover):
12689  """Proxy of C++ IMP::core::RigidBodyMover class."""
12690 
12691  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
12692 
12693  def __init__(self, m, pi, max_translation, max_rotation):
12694  """__init__(IMP::core::RigidBodyMover self, Model m, ParticleIndex pi, IMP::Float max_translation, IMP::Float max_rotation) -> RigidBodyMover"""
12695  this = _IMP_core.new_RigidBodyMover(m, pi, max_translation, max_rotation)
12696  try:
12697  self.this.append(this)
12698  except __builtin__.Exception:
12699  self.this = this
12700 
12701  def set_maximum_translation(self, mt):
12702  """set_maximum_translation(RigidBodyMover self, IMP::Float mt)"""
12703  return _IMP_core.RigidBodyMover_set_maximum_translation(self, mt)
12704 
12705 
12706  def set_maximum_rotation(self, mr):
12707  """set_maximum_rotation(RigidBodyMover self, IMP::Float mr)"""
12708  return _IMP_core.RigidBodyMover_set_maximum_rotation(self, mr)
12709 
12710 
12711  def get_maximum_translation(self):
12712  """get_maximum_translation(RigidBodyMover self) -> IMP::Float"""
12713  return _IMP_core.RigidBodyMover_get_maximum_translation(self)
12714 
12715 
12716  def get_maximum_rotation(self):
12717  """get_maximum_rotation(RigidBodyMover self) -> IMP::Float"""
12718  return _IMP_core.RigidBodyMover_get_maximum_rotation(self)
12719 
12720 
12721  def get_version_info(self):
12722  """get_version_info(RigidBodyMover self) -> VersionInfo"""
12723  return _IMP_core.RigidBodyMover_get_version_info(self)
12724 
12725 
12726  def __str__(self):
12727  """__str__(RigidBodyMover self) -> std::string"""
12728  return _IMP_core.RigidBodyMover___str__(self)
12729 
12730 
12731  def __repr__(self):
12732  """__repr__(RigidBodyMover self) -> std::string"""
12733  return _IMP_core.RigidBodyMover___repr__(self)
12734 
12735 
12736  @staticmethod
12737  def get_from(o):
12738  return _object_cast_to_RigidBodyMover(o)
12739 
12740 RigidBodyMover_swigregister = _IMP_core.RigidBodyMover_swigregister
12741 RigidBodyMover_swigregister(RigidBodyMover)
12742 
12743 class RigidBodyTunneler(MonteCarloMover):
12744  """Proxy of C++ IMP::core::RigidBodyTunneler class."""
12745 
12746  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
12747 
12748  def __init__(self, m, pis, ref, k, move_probability=1.):
12749  """
12750  __init__(IMP::core::RigidBodyTunneler self, Model m, IMP::ParticleIndexes pis, ParticleIndex ref, double k, double move_probability=1.) -> RigidBodyTunneler
12751  __init__(IMP::core::RigidBodyTunneler self, Model m, IMP::ParticleIndexes pis, ParticleIndex ref, double k) -> RigidBodyTunneler
12752  """
12753  this = _IMP_core.new_RigidBodyTunneler(m, pis, ref, k, move_probability)
12754  try:
12755  self.this.append(this)
12756  except __builtin__.Exception:
12757  self.this = this
12758 
12759  def add_entry_point(self, fl):
12760  """add_entry_point(RigidBodyTunneler self, IMP::Floats fl)"""
12761  return _IMP_core.RigidBodyTunneler_add_entry_point(self, fl)
12762 
12763 
12764  def reset_stats(self):
12765  """reset_stats(RigidBodyTunneler self)"""
12766  return _IMP_core.RigidBodyTunneler_reset_stats(self)
12767 
12768 
12769  def get_number_of_rejected_moves(self):
12770  """get_number_of_rejected_moves(RigidBodyTunneler self) -> unsigned int"""
12771  return _IMP_core.RigidBodyTunneler_get_number_of_rejected_moves(self)
12772 
12773 
12774  def get_number_of_proposed_moves(self):
12775  """get_number_of_proposed_moves(RigidBodyTunneler self) -> unsigned int"""
12776  return _IMP_core.RigidBodyTunneler_get_number_of_proposed_moves(self)
12777 
12778 
12779  def get_number_of_impossible_moves(self):
12780  """get_number_of_impossible_moves(RigidBodyTunneler self) -> unsigned int"""
12781  return _IMP_core.RigidBodyTunneler_get_number_of_impossible_moves(self)
12782 
12783 
12784  def get_number_of_calls(self):
12785  """get_number_of_calls(RigidBodyTunneler self) -> unsigned int"""
12786  return _IMP_core.RigidBodyTunneler_get_number_of_calls(self)
12787 
12788 
12789  def get_reduced_coordinates(*args):
12790  """
12791  get_reduced_coordinates(Model m, ParticleIndex target, ParticleIndex ref) -> IMP::Floats
12792  get_reduced_coordinates(Model m, ParticleIndex pi) -> IMP::Floats
12793  """
12794  return _IMP_core.RigidBodyTunneler_get_reduced_coordinates(*args)
12795 
12796  get_reduced_coordinates = staticmethod(get_reduced_coordinates)
12797 
12798  def set_reduced_coordinates(m, target, ref, coords):
12799  """set_reduced_coordinates(Model m, ParticleIndex target, ParticleIndex ref, IMP::Floats coords)"""
12800  return _IMP_core.RigidBodyTunneler_set_reduced_coordinates(m, target, ref, coords)
12801 
12802  set_reduced_coordinates = staticmethod(set_reduced_coordinates)
12803 
12804  def get_version_info(self):
12805  """get_version_info(RigidBodyTunneler self) -> VersionInfo"""
12806  return _IMP_core.RigidBodyTunneler_get_version_info(self)
12807 
12808 
12809  def __str__(self):
12810  """__str__(RigidBodyTunneler self) -> std::string"""
12811  return _IMP_core.RigidBodyTunneler___str__(self)
12812 
12813 
12814  def __repr__(self):
12815  """__repr__(RigidBodyTunneler self) -> std::string"""
12816  return _IMP_core.RigidBodyTunneler___repr__(self)
12817 
12818 
12819  @staticmethod
12820  def get_from(o):
12821  return _object_cast_to_RigidBodyTunneler(o)
12822 
12823 RigidBodyTunneler_swigregister = _IMP_core.RigidBodyTunneler_swigregister
12824 RigidBodyTunneler_swigregister(RigidBodyTunneler)
12825 
12826 def RigidBodyTunneler_get_reduced_coordinates(*args):
12827  """
12828  get_reduced_coordinates(Model m, ParticleIndex target, ParticleIndex ref) -> IMP::Floats
12829  RigidBodyTunneler_get_reduced_coordinates(Model m, ParticleIndex pi) -> IMP::Floats
12830  """
12831  return _IMP_core.RigidBodyTunneler_get_reduced_coordinates(*args)
12832 
12833 def RigidBodyTunneler_set_reduced_coordinates(m, target, ref, coords):
12834  """RigidBodyTunneler_set_reduced_coordinates(Model m, ParticleIndex target, ParticleIndex ref, IMP::Floats coords)"""
12835  return _IMP_core.RigidBodyTunneler_set_reduced_coordinates(m, target, ref, coords)
12836 
12837 class RigidBodyUmbrella(IMP.Restraint):
12838  """Proxy of C++ IMP::core::RigidBodyUmbrella class."""
12839 
12840  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
12841 
12842  def __init__(self, *args):
12843  """
12844  __init__(IMP::core::RigidBodyUmbrella self, Model m, ParticleIndex pi, ParticleIndex ref, IMP::Floats x0, double alpha, double k, std::string name) -> RigidBodyUmbrella
12845  __init__(IMP::core::RigidBodyUmbrella self, Model m, ParticleIndex pi, ParticleIndex ref, IMP::Floats x0, double alpha, double k) -> RigidBodyUmbrella
12846  __init__(IMP::core::RigidBodyUmbrella self, Model m, ParticleIndex pi, ParticleIndex ref, double arg5, IMP::Floats x1, IMP::Floats x2, double alpha, double k, std::string name) -> RigidBodyUmbrella
12847  __init__(IMP::core::RigidBodyUmbrella self, Model m, ParticleIndex pi, ParticleIndex ref, double arg5, IMP::Floats x1, IMP::Floats x2, double alpha, double k) -> RigidBodyUmbrella
12848  """
12849  this = _IMP_core.new_RigidBodyUmbrella(*args)
12850  try:
12851  self.this.append(this)
12852  except __builtin__.Exception:
12853  self.this = this
12854 
12855  def set_x0(self, *args):
12856  """
12857  set_x0(RigidBodyUmbrella self, IMP::Floats x0)
12858  set_x0(RigidBodyUmbrella self, double arg2, IMP::Floats x1, IMP::Floats x2)
12859  """
12860  return _IMP_core.RigidBodyUmbrella_set_x0(self, *args)
12861 
12862 
12863  def get_x0(self):
12864  """get_x0(RigidBodyUmbrella self) -> IMP::Floats"""
12865  return _IMP_core.RigidBodyUmbrella_get_x0(self)
12866 
12867 
12868  def get_x(self):
12869  """get_x(RigidBodyUmbrella self) -> IMP::Floats"""
12870  return _IMP_core.RigidBodyUmbrella_get_x(self)
12871 
12872 
12873  def set_alpha(self, alpha):
12874  """set_alpha(RigidBodyUmbrella self, double alpha)"""
12875  return _IMP_core.RigidBodyUmbrella_set_alpha(self, alpha)
12876 
12877 
12878  def set_k(self, k):
12879  """set_k(RigidBodyUmbrella self, double k)"""
12880  return _IMP_core.RigidBodyUmbrella_set_k(self, k)
12881 
12882 
12883  def get_version_info(self):
12884  """get_version_info(RigidBodyUmbrella self) -> VersionInfo"""
12885  return _IMP_core.RigidBodyUmbrella_get_version_info(self)
12886 
12887 
12888  def __str__(self):
12889  """__str__(RigidBodyUmbrella self) -> std::string"""
12890  return _IMP_core.RigidBodyUmbrella___str__(self)
12891 
12892 
12893  def __repr__(self):
12894  """__repr__(RigidBodyUmbrella self) -> std::string"""
12895  return _IMP_core.RigidBodyUmbrella___repr__(self)
12896 
12897 
12898  @staticmethod
12899  def get_from(o):
12900  return _object_cast_to_RigidBodyUmbrella(o)
12901 
12902 RigidBodyUmbrella_swigregister = _IMP_core.RigidBodyUmbrella_swigregister
12903 RigidBodyUmbrella_swigregister(RigidBodyUmbrella)
12904 
12905 class VolumeRestraint(IMP.Restraint):
12906  """Proxy of C++ IMP::core::VolumeRestraint class."""
12907 
12908  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
12909 
12910  def __init__(self, f, sc, volume):
12911  """__init__(IMP::core::VolumeRestraint self, UnaryFunction f, SingletonContainer sc, double volume) -> VolumeRestraint"""
12912  this = _IMP_core.new_VolumeRestraint(f, sc, volume)
12913  try:
12914  self.this.append(this)
12915  except __builtin__.Exception:
12916  self.this = this
12917 
12918  def do_get_inputs(self):
12919  """do_get_inputs(VolumeRestraint self) -> IMP::ModelObjectsTemp"""
12920  return _IMP_core.VolumeRestraint_do_get_inputs(self)
12921 
12922 
12923  def get_version_info(self):
12924  """get_version_info(VolumeRestraint self) -> VersionInfo"""
12925  return _IMP_core.VolumeRestraint_get_version_info(self)
12926 
12927 
12928  def __str__(self):
12929  """__str__(VolumeRestraint self) -> std::string"""
12930  return _IMP_core.VolumeRestraint___str__(self)
12931 
12932 
12933  def __repr__(self):
12934  """__repr__(VolumeRestraint self) -> std::string"""
12935  return _IMP_core.VolumeRestraint___repr__(self)
12936 
12937 
12938  @staticmethod
12939  def get_from(o):
12940  return _object_cast_to_VolumeRestraint(o)
12941 
12942 VolumeRestraint_swigregister = _IMP_core.VolumeRestraint_swigregister
12943 VolumeRestraint_swigregister(VolumeRestraint)
12944 
12945 
12946 def get_centroid(ps):
12947  """get_centroid(IMP::core::XYZs const & ps) -> Vector3D"""
12948  return _IMP_core.get_centroid(ps)
12949 
12950 def get_bounding_box(ps):
12951  """get_bounding_box(IMP::core::XYZRs const & ps) -> BoundingBox3D"""
12952  return _IMP_core.get_bounding_box(ps)
12953 class MoveStatisticsScoreState(IMP.ScoreState):
12954  """Proxy of C++ IMP::core::MoveStatisticsScoreState class."""
12955 
12956  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
12957 
12958  def __init__(self, ps):
12959  """__init__(IMP::core::MoveStatisticsScoreState self, IMP::ParticlesTemp const & ps) -> MoveStatisticsScoreState"""
12960  this = _IMP_core.new_MoveStatisticsScoreState(ps)
12961  try:
12962  self.this.append(this)
12963  except __builtin__.Exception:
12964  self.this = this
12965 
12966  def show_statistics(self, *args):
12967  """
12968  show_statistics(MoveStatisticsScoreState self, _ostream out)
12969  show_statistics(MoveStatisticsScoreState self)
12970  """
12971  return _IMP_core.MoveStatisticsScoreState_show_statistics(self, *args)
12972 
12973 
12974  def reset(self):
12975  """reset(MoveStatisticsScoreState self)"""
12976  return _IMP_core.MoveStatisticsScoreState_reset(self)
12977 
12978 
12979  def do_before_evaluate(self):
12980  """do_before_evaluate(MoveStatisticsScoreState self)"""
12981  return _IMP_core.MoveStatisticsScoreState_do_before_evaluate(self)
12982 
12983 
12984  def do_after_evaluate(self, da):
12985  """do_after_evaluate(MoveStatisticsScoreState self, DerivativeAccumulator da)"""
12986  return _IMP_core.MoveStatisticsScoreState_do_after_evaluate(self, da)
12987 
12988 
12989  def do_get_inputs(self):
12990  """do_get_inputs(MoveStatisticsScoreState self) -> IMP::ModelObjectsTemp"""
12991  return _IMP_core.MoveStatisticsScoreState_do_get_inputs(self)
12992 
12993 
12994  def do_get_outputs(self):
12995  """do_get_outputs(MoveStatisticsScoreState self) -> IMP::ModelObjectsTemp"""
12996  return _IMP_core.MoveStatisticsScoreState_do_get_outputs(self)
12997 
12998 
12999  def get_version_info(self):
13000  """get_version_info(MoveStatisticsScoreState self) -> VersionInfo"""
13001  return _IMP_core.MoveStatisticsScoreState_get_version_info(self)
13002 
13003 
13004  def __str__(self):
13005  """__str__(MoveStatisticsScoreState self) -> std::string"""
13006  return _IMP_core.MoveStatisticsScoreState___str__(self)
13007 
13008 
13009  def __repr__(self):
13010  """__repr__(MoveStatisticsScoreState self) -> std::string"""
13011  return _IMP_core.MoveStatisticsScoreState___repr__(self)
13012 
13013 
13014  @staticmethod
13015  def get_from(o):
13016  return _object_cast_to_MoveStatisticsScoreState(o)
13017 
13018 MoveStatisticsScoreState_swigregister = _IMP_core.MoveStatisticsScoreState_swigregister
13019 MoveStatisticsScoreState_swigregister(MoveStatisticsScoreState)
13020 
13021 IMP_PARTICLE_TYPE_INDEX = _IMP_core.IMP_PARTICLE_TYPE_INDEX
13022 class Typed(IMP.Decorator):
13023  """Proxy of C++ IMP::core::Typed class."""
13024 
13025  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
13026 
13027  def get_type_key():
13028  """get_type_key() -> IntKey"""
13029  return _IMP_core.Typed_get_type_key()
13030 
13031  get_type_key = staticmethod(get_type_key)
13032 
13033  def __init__(self, *args):
13034  """
13035  __init__(IMP::core::Typed self) -> Typed
13036  __init__(IMP::core::Typed self, Model m, ParticleIndex id) -> Typed
13037  __init__(IMP::core::Typed self, _ParticleAdaptor d) -> Typed
13038  """
13039  this = _IMP_core.new_Typed(*args)
13040  try:
13041  self.this.append(this)
13042  except __builtin__.Exception:
13043  self.this = this
13044 
13045  def show(self, *args):
13046  """
13047  show(Typed self, _ostream out)
13048  show(Typed self)
13049  """
13050  return _IMP_core.Typed_show(self, *args)
13051 
13052 
13053  def setup_particle(*args):
13054  """
13055  setup_particle(Model m, ParticleIndex pi, ParticleType t) -> Typed
13056  setup_particle(_ParticleAdaptor decorator, ParticleType t) -> Typed
13057  """
13058  return _IMP_core.Typed_setup_particle(*args)
13059 
13060  setup_particle = staticmethod(setup_particle)
13061 
13062  def get_is_setup(*args):
13063  """
13064  get_is_setup(_ParticleAdaptor p) -> bool
13065  get_is_setup(Model m, ParticleIndex pi) -> bool
13066  """
13067  return _IMP_core.Typed_get_is_setup(*args)
13068 
13069  get_is_setup = staticmethod(get_is_setup)
13070 
13071  def get_type(self):
13072  """get_type(Typed self) -> ParticleType"""
13073  return _IMP_core.Typed_get_type(self)
13074 
13075 
13076  def set_type(self, pt):
13077  """set_type(Typed self, ParticleType pt)"""
13078  return _IMP_core.Typed_set_type(self, pt)
13079 
13080 
13081  def add_attribute(self, *args):
13082  """
13083  add_attribute(Typed self, FloatKey k, IMP::Float v, bool opt)
13084  add_attribute(Typed self, FloatKey a0, IMP::Float a1)
13085  add_attribute(Typed self, IntKey a0, IMP::Int a1)
13086  add_attribute(Typed self, StringKey a0, IMP::String a1)
13087  add_attribute(Typed self, ParticleIndexKey a0, Particle a1)
13088  add_attribute(Typed self, ObjectKey a0, Object a1)
13089  """
13090  return _IMP_core.Typed_add_attribute(self, *args)
13091 
13092 
13093  def get_value(self, *args):
13094  """
13095  get_value(Typed self, FloatKey a0) -> IMP::Float
13096  get_value(Typed self, IntKey a0) -> IMP::Int
13097  get_value(Typed self, StringKey a0) -> IMP::String
13098  get_value(Typed self, ParticleIndexKey a0) -> Particle
13099  get_value(Typed self, ObjectKey a0) -> Object
13100  """
13101  return _IMP_core.Typed_get_value(self, *args)
13102 
13103 
13104  def set_value(self, *args):
13105  """
13106  set_value(Typed self, FloatKey a0, IMP::Float a1)
13107  set_value(Typed self, IntKey a0, IMP::Int a1)
13108  set_value(Typed self, StringKey a0, IMP::String a1)
13109  set_value(Typed self, ParticleIndexKey a0, Particle a1)
13110  set_value(Typed self, ObjectKey a0, Object a1)
13111  """
13112  return _IMP_core.Typed_set_value(self, *args)
13113 
13114 
13115  def remove_attribute(self, *args):
13116  """
13117  remove_attribute(Typed self, FloatKey a0)
13118  remove_attribute(Typed self, IntKey a0)
13119  remove_attribute(Typed self, StringKey a0)
13120  remove_attribute(Typed self, ParticleIndexKey a0)
13121  remove_attribute(Typed self, ObjectKey a0)
13122  """
13123  return _IMP_core.Typed_remove_attribute(self, *args)
13124 
13125 
13126  def has_attribute(self, *args):
13127  """
13128  has_attribute(Typed self, FloatKey a0) -> bool
13129  has_attribute(Typed self, IntKey a0) -> bool
13130  has_attribute(Typed self, StringKey a0) -> bool
13131  has_attribute(Typed self, ParticleIndexKey a0) -> bool
13132  has_attribute(Typed self, ObjectKey a0) -> bool
13133  """
13134  return _IMP_core.Typed_has_attribute(self, *args)
13135 
13136 
13137  def get_derivative(self, a0):
13138  """get_derivative(Typed self, FloatKey a0) -> double"""
13139  return _IMP_core.Typed_get_derivative(self, a0)
13140 
13141 
13142  def get_name(self):
13143  """get_name(Typed self) -> std::string"""
13144  return _IMP_core.Typed_get_name(self)
13145 
13146 
13147  def clear_caches(self):
13148  """clear_caches(Typed self)"""
13149  return _IMP_core.Typed_clear_caches(self)
13150 
13151 
13152  def set_name(self, a0):
13153  """set_name(Typed self, std::string a0)"""
13154  return _IMP_core.Typed_set_name(self, a0)
13155 
13156 
13157  def set_check_level(self, a0):
13158  """set_check_level(Typed self, IMP::CheckLevel a0)"""
13159  return _IMP_core.Typed_set_check_level(self, a0)
13160 
13161 
13162  def add_to_derivative(self, a0, a1, a2):
13163  """add_to_derivative(Typed self, FloatKey a0, double a1, DerivativeAccumulator a2)"""
13164  return _IMP_core.Typed_add_to_derivative(self, a0, a1, a2)
13165 
13166 
13167  def set_is_optimized(self, a0, a1):
13168  """set_is_optimized(Typed self, FloatKey a0, bool a1)"""
13169  return _IMP_core.Typed_set_is_optimized(self, a0, a1)
13170 
13171 
13172  def get_is_optimized(self, a0):
13173  """get_is_optimized(Typed self, FloatKey a0) -> bool"""
13174  return _IMP_core.Typed_get_is_optimized(self, a0)
13175 
13176 
13177  def get_check_level(self):
13178  """get_check_level(Typed self) -> IMP::CheckLevel"""
13179  return _IMP_core.Typed_get_check_level(self)
13180 
13181 
13182  def __eq__(self, *args):
13183  """
13184  __eq__(Typed self, Typed o) -> bool
13185  __eq__(Typed self, Particle d) -> bool
13186  """
13187  return _IMP_core.Typed___eq__(self, *args)
13188 
13189 
13190  def __ne__(self, *args):
13191  """
13192  __ne__(Typed self, Typed o) -> bool
13193  __ne__(Typed self, Particle d) -> bool
13194  """
13195  return _IMP_core.Typed___ne__(self, *args)
13196 
13197 
13198  def __le__(self, *args):
13199  """
13200  __le__(Typed self, Typed o) -> bool
13201  __le__(Typed self, Particle d) -> bool
13202  """
13203  return _IMP_core.Typed___le__(self, *args)
13204 
13205 
13206  def __lt__(self, *args):
13207  """
13208  __lt__(Typed self, Typed o) -> bool
13209  __lt__(Typed self, Particle d) -> bool
13210  """
13211  return _IMP_core.Typed___lt__(self, *args)
13212 
13213 
13214  def __ge__(self, *args):
13215  """
13216  __ge__(Typed self, Typed o) -> bool
13217  __ge__(Typed self, Particle d) -> bool
13218  """
13219  return _IMP_core.Typed___ge__(self, *args)
13220 
13221 
13222  def __gt__(self, *args):
13223  """
13224  __gt__(Typed self, Typed o) -> bool
13225  __gt__(Typed self, Particle d) -> bool
13226  """
13227  return _IMP_core.Typed___gt__(self, *args)
13228 
13229 
13230  def __hash__(self):
13231  """__hash__(Typed self) -> std::size_t"""
13232  return _IMP_core.Typed___hash__(self)
13233 
13234 
13235  def __str__(self):
13236  """__str__(Typed self) -> std::string"""
13237  return _IMP_core.Typed___str__(self)
13238 
13239 
13240  def __repr__(self):
13241  """__repr__(Typed self) -> std::string"""
13242  return _IMP_core.Typed___repr__(self)
13243 
13244  __swig_destroy__ = _IMP_core.delete_Typed
13245  __del__ = lambda self: None
13246 Typed_swigregister = _IMP_core.Typed_swigregister
13247 Typed_swigregister(Typed)
13248 
13249 def Typed_get_type_key():
13250  """Typed_get_type_key() -> IntKey"""
13251  return _IMP_core.Typed_get_type_key()
13252 
13253 def Typed_setup_particle(*args):
13254  """
13255  setup_particle(Model m, ParticleIndex pi, ParticleType t) -> Typed
13256  Typed_setup_particle(_ParticleAdaptor decorator, ParticleType t) -> Typed
13257  """
13258  return _IMP_core.Typed_setup_particle(*args)
13259 
13260 def Typed_get_is_setup(*args):
13261  """
13262  get_is_setup(_ParticleAdaptor p) -> bool
13263  Typed_get_is_setup(Model m, ParticleIndex pi) -> bool
13264  """
13265  return _IMP_core.Typed_get_is_setup(*args)
13266 
13267 
13268 def __lshift__(*args):
13269  """
13270  __lshift__(_ostream out, XYZ n) -> _ostream
13271  __lshift__(_ostream out, XYZR n) -> _ostream
13272  __lshift__(_ostream out, Direction n) -> _ostream
13273  __lshift__(_ostream out, DirectionAngle n) -> _ostream
13274  __lshift__(_ostream out, Surface n) -> _ostream
13275  __lshift__(_ostream out, Centroid n) -> _ostream
13276  __lshift__(_ostream out, Cover n) -> _ostream
13277  __lshift__(_ostream out, Reference n) -> _ostream
13278  __lshift__(_ostream out, RigidMember n) -> _ostream
13279  __lshift__(_ostream out, RigidBody n) -> _ostream
13280  __lshift__(_ostream out, Gaussian n) -> _ostream
13281  __lshift__(_ostream out, Typed n) -> _ostream
13282  """
13283  return _IMP_core.__lshift__(*args)
13284 class WriteRestraintScoresOptimizerState(IMP.OptimizerState):
13285  """Proxy of C++ IMP::core::WriteRestraintScoresOptimizerState class."""
13286 
13287  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
13288 
13289  def __init__(self, rs, out):
13290  """__init__(IMP::core::WriteRestraintScoresOptimizerState self, IMP::Restraints const & rs, TextOutput out) -> WriteRestraintScoresOptimizerState"""
13291  this = _IMP_core.new_WriteRestraintScoresOptimizerState(rs, out)
13292  try:
13293  self.this.append(this)
13294  except __builtin__.Exception:
13295  self.this = this
13296 
13297  def get_version_info(self):
13298  """get_version_info(WriteRestraintScoresOptimizerState self) -> VersionInfo"""
13299  return _IMP_core.WriteRestraintScoresOptimizerState_get_version_info(self)
13300 
13301 
13302  def __str__(self):
13303  """__str__(WriteRestraintScoresOptimizerState self) -> std::string"""
13304  return _IMP_core.WriteRestraintScoresOptimizerState___str__(self)
13305 
13306 
13307  def __repr__(self):
13308  """__repr__(WriteRestraintScoresOptimizerState self) -> std::string"""
13309  return _IMP_core.WriteRestraintScoresOptimizerState___repr__(self)
13310 
13311 
13312  @staticmethod
13313  def get_from(o):
13314  return _object_cast_to_WriteRestraintScoresOptimizerState(o)
13315 
13316 WriteRestraintScoresOptimizerState_swigregister = _IMP_core.WriteRestraintScoresOptimizerState_swigregister
13317 WriteRestraintScoresOptimizerState_swigregister(WriteRestraintScoresOptimizerState)
13318 
13319 
13320 def assign_blame(rs, ps, attribute):
13321  """assign_blame(IMP::RestraintsTemp const & rs, IMP::ParticlesTemp const & ps, FloatKey attribute)"""
13322  return _IMP_core.assign_blame(rs, ps, attribute)
13323 
13324 def create_blame_geometries(*args):
13325  """
13326  create_blame_geometries(IMP::RestraintsTemp const & rs, IMP::ParticlesTemp const & ps, double max, std::string name) -> IMP::display::Geometries
13327  create_blame_geometries(IMP::RestraintsTemp const & rs, IMP::ParticlesTemp const & ps, double max) -> IMP::display::Geometries
13328  create_blame_geometries(IMP::RestraintsTemp const & rs, IMP::ParticlesTemp const & ps) -> IMP::display::Geometries
13329  """
13330  return _IMP_core.create_blame_geometries(*args)
13331 class MultipleBinormalRestraint(IMP.Restraint):
13332  """Proxy of C++ IMP::core::MultipleBinormalRestraint class."""
13333 
13334  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
13335 
13336  def __init__(self, m, q1, q2):
13337  """__init__(IMP::core::MultipleBinormalRestraint self, Model m, IMP::ParticleIndexQuad const & q1, IMP::ParticleIndexQuad const & q2) -> MultipleBinormalRestraint"""
13338  this = _IMP_core.new_MultipleBinormalRestraint(m, q1, q2)
13339  try:
13340  self.this.append(this)
13341  except __builtin__.Exception:
13342  self.this = this
13343 
13344  def add_term(self, term):
13345  """add_term(MultipleBinormalRestraint self, BinormalTerm term)"""
13346  return _IMP_core.MultipleBinormalRestraint_add_term(self, term)
13347 
13348 
13349  def do_get_inputs(self):
13350  """do_get_inputs(MultipleBinormalRestraint self) -> IMP::ModelObjectsTemp"""
13351  return _IMP_core.MultipleBinormalRestraint_do_get_inputs(self)
13352 
13353 
13354  def get_version_info(self):
13355  """get_version_info(MultipleBinormalRestraint self) -> VersionInfo"""
13356  return _IMP_core.MultipleBinormalRestraint_get_version_info(self)
13357 
13358 
13359  def __str__(self):
13360  """__str__(MultipleBinormalRestraint self) -> std::string"""
13361  return _IMP_core.MultipleBinormalRestraint___str__(self)
13362 
13363 
13364  def __repr__(self):
13365  """__repr__(MultipleBinormalRestraint self) -> std::string"""
13366  return _IMP_core.MultipleBinormalRestraint___repr__(self)
13367 
13368 
13369  @staticmethod
13370  def get_from(o):
13371  return _object_cast_to_MultipleBinormalRestraint(o)
13372 
13373 MultipleBinormalRestraint_swigregister = _IMP_core.MultipleBinormalRestraint_swigregister
13374 MultipleBinormalRestraint_swigregister(MultipleBinormalRestraint)
13375 
13376 class BinormalTerm(object):
13377  """Proxy of C++ IMP::core::BinormalTerm class."""
13378 
13379  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
13380 
13381  def __init__(self):
13382  """__init__(IMP::core::BinormalTerm self) -> BinormalTerm"""
13383  this = _IMP_core.new_BinormalTerm()
13384  try:
13385  self.this.append(this)
13386  except __builtin__.Exception:
13387  self.this = this
13388 
13389  def set_correlation(self, correlation):
13390  """set_correlation(BinormalTerm self, double correlation)"""
13391  return _IMP_core.BinormalTerm_set_correlation(self, correlation)
13392 
13393 
13394  def set_weight(self, weight):
13395  """set_weight(BinormalTerm self, double weight)"""
13396  return _IMP_core.BinormalTerm_set_weight(self, weight)
13397 
13398 
13399  def set_means(self, means):
13400  """set_means(BinormalTerm self, IMP::FloatPair means)"""
13401  return _IMP_core.BinormalTerm_set_means(self, means)
13402 
13403 
13404  def set_standard_deviations(self, stdevs):
13405  """set_standard_deviations(BinormalTerm self, IMP::FloatPair stdevs)"""
13406  return _IMP_core.BinormalTerm_set_standard_deviations(self, stdevs)
13407 
13408 
13409  def show(self, *args):
13410  """
13411  show(BinormalTerm self, _ostream out)
13412  show(BinormalTerm self)
13413  """
13414  return _IMP_core.BinormalTerm_show(self, *args)
13415 
13416 
13417  def __str__(self):
13418  """__str__(BinormalTerm self) -> std::string"""
13419  return _IMP_core.BinormalTerm___str__(self)
13420 
13421 
13422  def __repr__(self):
13423  """__repr__(BinormalTerm self) -> std::string"""
13424  return _IMP_core.BinormalTerm___repr__(self)
13425 
13426  __swig_destroy__ = _IMP_core.delete_BinormalTerm
13427  __del__ = lambda self: None
13428 BinormalTerm_swigregister = _IMP_core.BinormalTerm_swigregister
13429 BinormalTerm_swigregister(BinormalTerm)
13430 
13431 class Provenance(IMP.Decorator):
13432  """Proxy of C++ IMP::core::Provenance class."""
13433 
13434  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
13435 
13436  def get_previous(self):
13437  """get_previous(Provenance self) -> Provenance"""
13438  return _IMP_core.Provenance_get_previous(self)
13439 
13440 
13441  def set_previous(self, p):
13442  """set_previous(Provenance self, Provenance p)"""
13443  return _IMP_core.Provenance_set_previous(self, p)
13444 
13445 
13446  def __init__(self, *args):
13447  """
13448  __init__(IMP::core::Provenance self) -> Provenance
13449  __init__(IMP::core::Provenance self, Model m, ParticleIndex id) -> Provenance
13450  __init__(IMP::core::Provenance self, _ParticleAdaptor d) -> Provenance
13451  """
13452  this = _IMP_core.new_Provenance(*args)
13453  try:
13454  self.this.append(this)
13455  except __builtin__.Exception:
13456  self.this = this
13457 
13458  def get_is_setup(*args):
13459  """
13460  get_is_setup(Model m, ParticleIndex pi) -> bool
13461  get_is_setup(_ParticleAdaptor p) -> bool
13462  """
13463  return _IMP_core.Provenance_get_is_setup(*args)
13464 
13465  get_is_setup = staticmethod(get_is_setup)
13466 
13467  def show(self, *args):
13468  """
13469  show(Provenance self, _ostream out)
13470  show(Provenance self)
13471  """
13472  return _IMP_core.Provenance_show(self, *args)
13473 
13474 
13475  def setup_particle(*args):
13476  """
13477  setup_particle(Model m, ParticleIndex pi) -> Provenance
13478  setup_particle(_ParticleAdaptor decorator) -> Provenance
13479  """
13480  return _IMP_core.Provenance_setup_particle(*args)
13481 
13482  setup_particle = staticmethod(setup_particle)
13483 
13484  def add_attribute(self, *args):
13485  """
13486  add_attribute(Provenance self, FloatKey k, IMP::Float v, bool opt)
13487  add_attribute(Provenance self, FloatKey a0, IMP::Float a1)
13488  add_attribute(Provenance self, IntKey a0, IMP::Int a1)
13489  add_attribute(Provenance self, StringKey a0, IMP::String a1)
13490  add_attribute(Provenance self, ParticleIndexKey a0, Particle a1)
13491  add_attribute(Provenance self, ObjectKey a0, Object a1)
13492  """
13493  return _IMP_core.Provenance_add_attribute(self, *args)
13494 
13495 
13496  def get_value(self, *args):
13497  """
13498  get_value(Provenance self, FloatKey a0) -> IMP::Float
13499  get_value(Provenance self, IntKey a0) -> IMP::Int
13500  get_value(Provenance self, StringKey a0) -> IMP::String
13501  get_value(Provenance self, ParticleIndexKey a0) -> Particle
13502  get_value(Provenance self, ObjectKey a0) -> Object
13503  """
13504  return _IMP_core.Provenance_get_value(self, *args)
13505 
13506 
13507  def set_value(self, *args):
13508  """
13509  set_value(Provenance self, FloatKey a0, IMP::Float a1)
13510  set_value(Provenance self, IntKey a0, IMP::Int a1)
13511  set_value(Provenance self, StringKey a0, IMP::String a1)
13512  set_value(Provenance self, ParticleIndexKey a0, Particle a1)
13513  set_value(Provenance self, ObjectKey a0, Object a1)
13514  """
13515  return _IMP_core.Provenance_set_value(self, *args)
13516 
13517 
13518  def remove_attribute(self, *args):
13519  """
13520  remove_attribute(Provenance self, FloatKey a0)
13521  remove_attribute(Provenance self, IntKey a0)
13522  remove_attribute(Provenance self, StringKey a0)
13523  remove_attribute(Provenance self, ParticleIndexKey a0)
13524  remove_attribute(Provenance self, ObjectKey a0)
13525  """
13526  return _IMP_core.Provenance_remove_attribute(self, *args)
13527 
13528 
13529  def has_attribute(self, *args):
13530  """
13531  has_attribute(Provenance self, FloatKey a0) -> bool
13532  has_attribute(Provenance self, IntKey a0) -> bool
13533  has_attribute(Provenance self, StringKey a0) -> bool
13534  has_attribute(Provenance self, ParticleIndexKey a0) -> bool
13535  has_attribute(Provenance self, ObjectKey a0) -> bool
13536  """
13537  return _IMP_core.Provenance_has_attribute(self, *args)
13538 
13539 
13540  def get_derivative(self, a0):
13541  """get_derivative(Provenance self, FloatKey a0) -> double"""
13542  return _IMP_core.Provenance_get_derivative(self, a0)
13543 
13544 
13545  def get_name(self):
13546  """get_name(Provenance self) -> std::string"""
13547  return _IMP_core.Provenance_get_name(self)
13548 
13549 
13550  def clear_caches(self):
13551  """clear_caches(Provenance self)"""
13552  return _IMP_core.Provenance_clear_caches(self)
13553 
13554 
13555  def set_name(self, a0):
13556  """set_name(Provenance self, std::string a0)"""
13557  return _IMP_core.Provenance_set_name(self, a0)
13558 
13559 
13560  def set_check_level(self, a0):
13561  """set_check_level(Provenance self, IMP::CheckLevel a0)"""
13562  return _IMP_core.Provenance_set_check_level(self, a0)
13563 
13564 
13565  def add_to_derivative(self, a0, a1, a2):
13566  """add_to_derivative(Provenance self, FloatKey a0, double a1, DerivativeAccumulator a2)"""
13567  return _IMP_core.Provenance_add_to_derivative(self, a0, a1, a2)
13568 
13569 
13570  def set_is_optimized(self, a0, a1):
13571  """set_is_optimized(Provenance self, FloatKey a0, bool a1)"""
13572  return _IMP_core.Provenance_set_is_optimized(self, a0, a1)
13573 
13574 
13575  def get_is_optimized(self, a0):
13576  """get_is_optimized(Provenance self, FloatKey a0) -> bool"""
13577  return _IMP_core.Provenance_get_is_optimized(self, a0)
13578 
13579 
13580  def get_check_level(self):
13581  """get_check_level(Provenance self) -> IMP::CheckLevel"""
13582  return _IMP_core.Provenance_get_check_level(self)
13583 
13584 
13585  def __eq__(self, *args):
13586  """
13587  __eq__(Provenance self, Provenance o) -> bool
13588  __eq__(Provenance self, Particle d) -> bool
13589  """
13590  return _IMP_core.Provenance___eq__(self, *args)
13591 
13592 
13593  def __ne__(self, *args):
13594  """
13595  __ne__(Provenance self, Provenance o) -> bool
13596  __ne__(Provenance self, Particle d) -> bool
13597  """
13598  return _IMP_core.Provenance___ne__(self, *args)
13599 
13600 
13601  def __le__(self, *args):
13602  """
13603  __le__(Provenance self, Provenance o) -> bool
13604  __le__(Provenance self, Particle d) -> bool
13605  """
13606  return _IMP_core.Provenance___le__(self, *args)
13607 
13608 
13609  def __lt__(self, *args):
13610  """
13611  __lt__(Provenance self, Provenance o) -> bool
13612  __lt__(Provenance self, Particle d) -> bool
13613  """
13614  return _IMP_core.Provenance___lt__(self, *args)
13615 
13616 
13617  def __ge__(self, *args):
13618  """
13619  __ge__(Provenance self, Provenance o) -> bool
13620  __ge__(Provenance self, Particle d) -> bool
13621  """
13622  return _IMP_core.Provenance___ge__(self, *args)
13623 
13624 
13625  def __gt__(self, *args):
13626  """
13627  __gt__(Provenance self, Provenance o) -> bool
13628  __gt__(Provenance self, Particle d) -> bool
13629  """
13630  return _IMP_core.Provenance___gt__(self, *args)
13631 
13632 
13633  def __hash__(self):
13634  """__hash__(Provenance self) -> std::size_t"""
13635  return _IMP_core.Provenance___hash__(self)
13636 
13637 
13638  def __str__(self):
13639  """__str__(Provenance self) -> std::string"""
13640  return _IMP_core.Provenance___str__(self)
13641 
13642 
13643  def __repr__(self):
13644  """__repr__(Provenance self) -> std::string"""
13645  return _IMP_core.Provenance___repr__(self)
13646 
13647  __swig_destroy__ = _IMP_core.delete_Provenance
13648  __del__ = lambda self: None
13649 Provenance_swigregister = _IMP_core.Provenance_swigregister
13650 Provenance_swigregister(Provenance)
13651 
13652 def Provenance_get_is_setup(*args):
13653  """
13654  get_is_setup(Model m, ParticleIndex pi) -> bool
13655  Provenance_get_is_setup(_ParticleAdaptor p) -> bool
13656  """
13657  return _IMP_core.Provenance_get_is_setup(*args)
13658 
13659 def Provenance_setup_particle(*args):
13660  """
13661  setup_particle(Model m, ParticleIndex pi) -> Provenance
13662  Provenance_setup_particle(_ParticleAdaptor decorator) -> Provenance
13663  """
13664  return _IMP_core.Provenance_setup_particle(*args)
13665 
13666 class StructureProvenance(Provenance):
13667  """Proxy of C++ IMP::core::StructureProvenance class."""
13668 
13669  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
13670 
13671  def set_filename(self, filename):
13672  """set_filename(StructureProvenance self, std::string filename)"""
13673  return _IMP_core.StructureProvenance_set_filename(self, filename)
13674 
13675 
13676  def get_filename(self):
13677  """get_filename(StructureProvenance self) -> std::string"""
13678  return _IMP_core.StructureProvenance_get_filename(self)
13679 
13680 
13681  def set_chain_id(self, chain_id):
13682  """set_chain_id(StructureProvenance self, std::string chain_id)"""
13683  return _IMP_core.StructureProvenance_set_chain_id(self, chain_id)
13684 
13685 
13686  def get_chain_id(self):
13687  """get_chain_id(StructureProvenance self) -> std::string"""
13688  return _IMP_core.StructureProvenance_get_chain_id(self)
13689 
13690 
13691  def set_residue_offset(self, residue_offset):
13692  """set_residue_offset(StructureProvenance self, int residue_offset)"""
13693  return _IMP_core.StructureProvenance_set_residue_offset(self, residue_offset)
13694 
13695 
13696  def get_residue_offset(self):
13697  """get_residue_offset(StructureProvenance self) -> int"""
13698  return _IMP_core.StructureProvenance_get_residue_offset(self)
13699 
13700 
13701  def __init__(self, *args):
13702  """
13703  __init__(IMP::core::StructureProvenance self) -> StructureProvenance
13704  __init__(IMP::core::StructureProvenance self, Model m, ParticleIndex id) -> StructureProvenance
13705  __init__(IMP::core::StructureProvenance self, _ParticleAdaptor d) -> StructureProvenance
13706  """
13707  this = _IMP_core.new_StructureProvenance(*args)
13708  try:
13709  self.this.append(this)
13710  except __builtin__.Exception:
13711  self.this = this
13712 
13713  def get_is_setup(*args):
13714  """
13715  get_is_setup(Model m, ParticleIndex pi) -> bool
13716  get_is_setup(_ParticleAdaptor p) -> bool
13717  """
13718  return _IMP_core.StructureProvenance_get_is_setup(*args)
13719 
13720  get_is_setup = staticmethod(get_is_setup)
13721 
13722  def show(self, *args):
13723  """
13724  show(StructureProvenance self, _ostream out)
13725  show(StructureProvenance self)
13726  """
13727  return _IMP_core.StructureProvenance_show(self, *args)
13728 
13729 
13730  def setup_particle(*args):
13731  """
13732  setup_particle(Model m, ParticleIndex pi, std::string filename, std::string chain_id, int residue_offset) -> StructureProvenance
13733  setup_particle(_ParticleAdaptor decorator, std::string filename, std::string chain_id, int residue_offset) -> StructureProvenance
13734  setup_particle(Model m, ParticleIndex pi, std::string filename, std::string chain_id) -> StructureProvenance
13735  setup_particle(_ParticleAdaptor decorator, std::string filename, std::string chain_id) -> StructureProvenance
13736  setup_particle(Model m, ParticleIndex pi, StructureProvenance o) -> StructureProvenance
13737  setup_particle(_ParticleAdaptor decorator, StructureProvenance o) -> StructureProvenance
13738  """
13739  return _IMP_core.StructureProvenance_setup_particle(*args)
13740 
13741  setup_particle = staticmethod(setup_particle)
13742 
13743  def add_attribute(self, *args):
13744  """
13745  add_attribute(StructureProvenance self, FloatKey k, IMP::Float v, bool opt)
13746  add_attribute(StructureProvenance self, FloatKey a0, IMP::Float a1)
13747  add_attribute(StructureProvenance self, IntKey a0, IMP::Int a1)
13748  add_attribute(StructureProvenance self, StringKey a0, IMP::String a1)
13749  add_attribute(StructureProvenance self, ParticleIndexKey a0, Particle a1)
13750  add_attribute(StructureProvenance self, ObjectKey a0, Object a1)
13751  """
13752  return _IMP_core.StructureProvenance_add_attribute(self, *args)
13753 
13754 
13755  def get_value(self, *args):
13756  """
13757  get_value(StructureProvenance self, FloatKey a0) -> IMP::Float
13758  get_value(StructureProvenance self, IntKey a0) -> IMP::Int
13759  get_value(StructureProvenance self, StringKey a0) -> IMP::String
13760  get_value(StructureProvenance self, ParticleIndexKey a0) -> Particle
13761  get_value(StructureProvenance self, ObjectKey a0) -> Object
13762  """
13763  return _IMP_core.StructureProvenance_get_value(self, *args)
13764 
13765 
13766  def set_value(self, *args):
13767  """
13768  set_value(StructureProvenance self, FloatKey a0, IMP::Float a1)
13769  set_value(StructureProvenance self, IntKey a0, IMP::Int a1)
13770  set_value(StructureProvenance self, StringKey a0, IMP::String a1)
13771  set_value(StructureProvenance self, ParticleIndexKey a0, Particle a1)
13772  set_value(StructureProvenance self, ObjectKey a0, Object a1)
13773  """
13774  return _IMP_core.StructureProvenance_set_value(self, *args)
13775 
13776 
13777  def remove_attribute(self, *args):
13778  """
13779  remove_attribute(StructureProvenance self, FloatKey a0)
13780  remove_attribute(StructureProvenance self, IntKey a0)
13781  remove_attribute(StructureProvenance self, StringKey a0)
13782  remove_attribute(StructureProvenance self, ParticleIndexKey a0)
13783  remove_attribute(StructureProvenance self, ObjectKey a0)
13784  """
13785  return _IMP_core.StructureProvenance_remove_attribute(self, *args)
13786 
13787 
13788  def has_attribute(self, *args):
13789  """
13790  has_attribute(StructureProvenance self, FloatKey a0) -> bool
13791  has_attribute(StructureProvenance self, IntKey a0) -> bool
13792  has_attribute(StructureProvenance self, StringKey a0) -> bool
13793  has_attribute(StructureProvenance self, ParticleIndexKey a0) -> bool
13794  has_attribute(StructureProvenance self, ObjectKey a0) -> bool
13795  """
13796  return _IMP_core.StructureProvenance_has_attribute(self, *args)
13797 
13798 
13799  def get_derivative(self, a0):
13800  """get_derivative(StructureProvenance self, FloatKey a0) -> double"""
13801  return _IMP_core.StructureProvenance_get_derivative(self, a0)
13802 
13803 
13804  def get_name(self):
13805  """get_name(StructureProvenance self) -> std::string"""
13806  return _IMP_core.StructureProvenance_get_name(self)
13807 
13808 
13809  def clear_caches(self):
13810  """clear_caches(StructureProvenance self)"""
13811  return _IMP_core.StructureProvenance_clear_caches(self)
13812 
13813 
13814  def set_name(self, a0):
13815  """set_name(StructureProvenance self, std::string a0)"""
13816  return _IMP_core.StructureProvenance_set_name(self, a0)
13817 
13818 
13819  def set_check_level(self, a0):
13820  """set_check_level(StructureProvenance self, IMP::CheckLevel a0)"""
13821  return _IMP_core.StructureProvenance_set_check_level(self, a0)
13822 
13823 
13824  def add_to_derivative(self, a0, a1, a2):
13825  """add_to_derivative(StructureProvenance self, FloatKey a0, double a1, DerivativeAccumulator a2)"""
13826  return _IMP_core.StructureProvenance_add_to_derivative(self, a0, a1, a2)
13827 
13828 
13829  def set_is_optimized(self, a0, a1):
13830  """set_is_optimized(StructureProvenance self, FloatKey a0, bool a1)"""
13831  return _IMP_core.StructureProvenance_set_is_optimized(self, a0, a1)
13832 
13833 
13834  def get_is_optimized(self, a0):
13835  """get_is_optimized(StructureProvenance self, FloatKey a0) -> bool"""
13836  return _IMP_core.StructureProvenance_get_is_optimized(self, a0)
13837 
13838 
13839  def get_check_level(self):
13840  """get_check_level(StructureProvenance self) -> IMP::CheckLevel"""
13841  return _IMP_core.StructureProvenance_get_check_level(self)
13842 
13843 
13844  def __eq__(self, *args):
13845  """
13846  __eq__(StructureProvenance self, StructureProvenance o) -> bool
13847  __eq__(StructureProvenance self, Particle d) -> bool
13848  """
13849  return _IMP_core.StructureProvenance___eq__(self, *args)
13850 
13851 
13852  def __ne__(self, *args):
13853  """
13854  __ne__(StructureProvenance self, StructureProvenance o) -> bool
13855  __ne__(StructureProvenance self, Particle d) -> bool
13856  """
13857  return _IMP_core.StructureProvenance___ne__(self, *args)
13858 
13859 
13860  def __le__(self, *args):
13861  """
13862  __le__(StructureProvenance self, StructureProvenance o) -> bool
13863  __le__(StructureProvenance self, Particle d) -> bool
13864  """
13865  return _IMP_core.StructureProvenance___le__(self, *args)
13866 
13867 
13868  def __lt__(self, *args):
13869  """
13870  __lt__(StructureProvenance self, StructureProvenance o) -> bool
13871  __lt__(StructureProvenance self, Particle d) -> bool
13872  """
13873  return _IMP_core.StructureProvenance___lt__(self, *args)
13874 
13875 
13876  def __ge__(self, *args):
13877  """
13878  __ge__(StructureProvenance self, StructureProvenance o) -> bool
13879  __ge__(StructureProvenance self, Particle d) -> bool
13880  """
13881  return _IMP_core.StructureProvenance___ge__(self, *args)
13882 
13883 
13884  def __gt__(self, *args):
13885  """
13886  __gt__(StructureProvenance self, StructureProvenance o) -> bool
13887  __gt__(StructureProvenance self, Particle d) -> bool
13888  """
13889  return _IMP_core.StructureProvenance___gt__(self, *args)
13890 
13891 
13892  def __hash__(self):
13893  """__hash__(StructureProvenance self) -> std::size_t"""
13894  return _IMP_core.StructureProvenance___hash__(self)
13895 
13896 
13897  def __str__(self):
13898  """__str__(StructureProvenance self) -> std::string"""
13899  return _IMP_core.StructureProvenance___str__(self)
13900 
13901 
13902  def __repr__(self):
13903  """__repr__(StructureProvenance self) -> std::string"""
13904  return _IMP_core.StructureProvenance___repr__(self)
13905 
13906  __swig_destroy__ = _IMP_core.delete_StructureProvenance
13907  __del__ = lambda self: None
13908 StructureProvenance_swigregister = _IMP_core.StructureProvenance_swigregister
13909 StructureProvenance_swigregister(StructureProvenance)
13910 
13911 def StructureProvenance_get_is_setup(*args):
13912  """
13913  get_is_setup(Model m, ParticleIndex pi) -> bool
13914  StructureProvenance_get_is_setup(_ParticleAdaptor p) -> bool
13915  """
13916  return _IMP_core.StructureProvenance_get_is_setup(*args)
13917 
13918 def StructureProvenance_setup_particle(*args):
13919  """
13920  setup_particle(Model m, ParticleIndex pi, std::string filename, std::string chain_id, int residue_offset) -> StructureProvenance
13921  setup_particle(_ParticleAdaptor decorator, std::string filename, std::string chain_id, int residue_offset) -> StructureProvenance
13922  setup_particle(Model m, ParticleIndex pi, std::string filename, std::string chain_id) -> StructureProvenance
13923  setup_particle(_ParticleAdaptor decorator, std::string filename, std::string chain_id) -> StructureProvenance
13924  setup_particle(Model m, ParticleIndex pi, StructureProvenance o) -> StructureProvenance
13925  StructureProvenance_setup_particle(_ParticleAdaptor decorator, StructureProvenance o) -> StructureProvenance
13926  """
13927  return _IMP_core.StructureProvenance_setup_particle(*args)
13928 
13929 class SampleProvenance(Provenance):
13930  """Proxy of C++ IMP::core::SampleProvenance class."""
13931 
13932  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
13933 
13934  def set_method(self, method):
13935  """set_method(SampleProvenance self, std::string method)"""
13936  return _IMP_core.SampleProvenance_set_method(self, method)
13937 
13938 
13939  def get_method(self):
13940  """get_method(SampleProvenance self) -> std::string"""
13941  return _IMP_core.SampleProvenance_get_method(self)
13942 
13943 
13944  def set_number_of_frames(self, frames):
13945  """set_number_of_frames(SampleProvenance self, int frames)"""
13946  return _IMP_core.SampleProvenance_set_number_of_frames(self, frames)
13947 
13948 
13949  def get_number_of_frames(self):
13950  """get_number_of_frames(SampleProvenance self) -> int"""
13951  return _IMP_core.SampleProvenance_get_number_of_frames(self)
13952 
13953 
13954  def set_number_of_iterations(self, iterations):
13955  """set_number_of_iterations(SampleProvenance self, int iterations)"""
13956  return _IMP_core.SampleProvenance_set_number_of_iterations(self, iterations)
13957 
13958 
13959  def get_number_of_iterations(self):
13960  """get_number_of_iterations(SampleProvenance self) -> int"""
13961  return _IMP_core.SampleProvenance_get_number_of_iterations(self)
13962 
13963 
13964  def set_number_of_replicas(self, replicas):
13965  """set_number_of_replicas(SampleProvenance self, int replicas)"""
13966  return _IMP_core.SampleProvenance_set_number_of_replicas(self, replicas)
13967 
13968 
13969  def get_number_of_replicas(self):
13970  """get_number_of_replicas(SampleProvenance self) -> int"""
13971  return _IMP_core.SampleProvenance_get_number_of_replicas(self)
13972 
13973 
13974  def __init__(self, *args):
13975  """
13976  __init__(IMP::core::SampleProvenance self) -> SampleProvenance
13977  __init__(IMP::core::SampleProvenance self, Model m, ParticleIndex id) -> SampleProvenance
13978  __init__(IMP::core::SampleProvenance self, _ParticleAdaptor d) -> SampleProvenance
13979  """
13980  this = _IMP_core.new_SampleProvenance(*args)
13981  try:
13982  self.this.append(this)
13983  except __builtin__.Exception:
13984  self.this = this
13985 
13986  def get_is_setup(*args):
13987  """
13988  get_is_setup(Model m, ParticleIndex pi) -> bool
13989  get_is_setup(_ParticleAdaptor p) -> bool
13990  """
13991  return _IMP_core.SampleProvenance_get_is_setup(*args)
13992 
13993  get_is_setup = staticmethod(get_is_setup)
13994 
13995  def show(self, *args):
13996  """
13997  show(SampleProvenance self, _ostream out)
13998  show(SampleProvenance self)
13999  """
14000  return _IMP_core.SampleProvenance_show(self, *args)
14001 
14002 
14003  def setup_particle(*args):
14004  """
14005  setup_particle(Model m, ParticleIndex pi, std::string method, int frames, int iterations, int replicas) -> SampleProvenance
14006  setup_particle(_ParticleAdaptor decorator, std::string method, int frames, int iterations, int replicas) -> SampleProvenance
14007  setup_particle(Model m, ParticleIndex pi, std::string method, int frames, int iterations) -> SampleProvenance
14008  setup_particle(_ParticleAdaptor decorator, std::string method, int frames, int iterations) -> SampleProvenance
14009  setup_particle(Model m, ParticleIndex pi, SampleProvenance o) -> SampleProvenance
14010  setup_particle(_ParticleAdaptor decorator, SampleProvenance o) -> SampleProvenance
14011  """
14012  return _IMP_core.SampleProvenance_setup_particle(*args)
14013 
14014  setup_particle = staticmethod(setup_particle)
14015 
14016  def add_attribute(self, *args):
14017  """
14018  add_attribute(SampleProvenance self, FloatKey k, IMP::Float v, bool opt)
14019  add_attribute(SampleProvenance self, FloatKey a0, IMP::Float a1)
14020  add_attribute(SampleProvenance self, IntKey a0, IMP::Int a1)
14021  add_attribute(SampleProvenance self, StringKey a0, IMP::String a1)
14022  add_attribute(SampleProvenance self, ParticleIndexKey a0, Particle a1)
14023  add_attribute(SampleProvenance self, ObjectKey a0, Object a1)
14024  """
14025  return _IMP_core.SampleProvenance_add_attribute(self, *args)
14026 
14027 
14028  def get_value(self, *args):
14029  """
14030  get_value(SampleProvenance self, FloatKey a0) -> IMP::Float
14031  get_value(SampleProvenance self, IntKey a0) -> IMP::Int
14032  get_value(SampleProvenance self, StringKey a0) -> IMP::String
14033  get_value(SampleProvenance self, ParticleIndexKey a0) -> Particle
14034  get_value(SampleProvenance self, ObjectKey a0) -> Object
14035  """
14036  return _IMP_core.SampleProvenance_get_value(self, *args)
14037 
14038 
14039  def set_value(self, *args):
14040  """
14041  set_value(SampleProvenance self, FloatKey a0, IMP::Float a1)
14042  set_value(SampleProvenance self, IntKey a0, IMP::Int a1)
14043  set_value(SampleProvenance self, StringKey a0, IMP::String a1)
14044  set_value(SampleProvenance self, ParticleIndexKey a0, Particle a1)
14045  set_value(SampleProvenance self, ObjectKey a0, Object a1)
14046  """
14047  return _IMP_core.SampleProvenance_set_value(self, *args)
14048 
14049 
14050  def remove_attribute(self, *args):
14051  """
14052  remove_attribute(SampleProvenance self, FloatKey a0)
14053  remove_attribute(SampleProvenance self, IntKey a0)
14054  remove_attribute(SampleProvenance self, StringKey a0)
14055  remove_attribute(SampleProvenance self, ParticleIndexKey a0)
14056  remove_attribute(SampleProvenance self, ObjectKey a0)
14057  """
14058  return _IMP_core.SampleProvenance_remove_attribute(self, *args)
14059 
14060 
14061  def has_attribute(self, *args):
14062  """
14063  has_attribute(SampleProvenance self, FloatKey a0) -> bool
14064  has_attribute(SampleProvenance self, IntKey a0) -> bool
14065  has_attribute(SampleProvenance self, StringKey a0) -> bool
14066  has_attribute(SampleProvenance self, ParticleIndexKey a0) -> bool
14067  has_attribute(SampleProvenance self, ObjectKey a0) -> bool
14068  """
14069  return _IMP_core.SampleProvenance_has_attribute(self, *args)
14070 
14071 
14072  def get_derivative(self, a0):
14073  """get_derivative(SampleProvenance self, FloatKey a0) -> double"""
14074  return _IMP_core.SampleProvenance_get_derivative(self, a0)
14075 
14076 
14077  def get_name(self):
14078  """get_name(SampleProvenance self) -> std::string"""
14079  return _IMP_core.SampleProvenance_get_name(self)
14080 
14081 
14082  def clear_caches(self):
14083  """clear_caches(SampleProvenance self)"""
14084  return _IMP_core.SampleProvenance_clear_caches(self)
14085 
14086 
14087  def set_name(self, a0):
14088  """set_name(SampleProvenance self, std::string a0)"""
14089  return _IMP_core.SampleProvenance_set_name(self, a0)
14090 
14091 
14092  def set_check_level(self, a0):
14093  """set_check_level(SampleProvenance self, IMP::CheckLevel a0)"""
14094  return _IMP_core.SampleProvenance_set_check_level(self, a0)
14095 
14096 
14097  def add_to_derivative(self, a0, a1, a2):
14098  """add_to_derivative(SampleProvenance self, FloatKey a0, double a1, DerivativeAccumulator a2)"""
14099  return _IMP_core.SampleProvenance_add_to_derivative(self, a0, a1, a2)
14100 
14101 
14102  def set_is_optimized(self, a0, a1):
14103  """set_is_optimized(SampleProvenance self, FloatKey a0, bool a1)"""
14104  return _IMP_core.SampleProvenance_set_is_optimized(self, a0, a1)
14105 
14106 
14107  def get_is_optimized(self, a0):
14108  """get_is_optimized(SampleProvenance self, FloatKey a0) -> bool"""
14109  return _IMP_core.SampleProvenance_get_is_optimized(self, a0)
14110 
14111 
14112  def get_check_level(self):
14113  """get_check_level(SampleProvenance self) -> IMP::CheckLevel"""
14114  return _IMP_core.SampleProvenance_get_check_level(self)
14115 
14116 
14117  def __eq__(self, *args):
14118  """
14119  __eq__(SampleProvenance self, SampleProvenance o) -> bool
14120  __eq__(SampleProvenance self, Particle d) -> bool
14121  """
14122  return _IMP_core.SampleProvenance___eq__(self, *args)
14123 
14124 
14125  def __ne__(self, *args):
14126  """
14127  __ne__(SampleProvenance self, SampleProvenance o) -> bool
14128  __ne__(SampleProvenance self, Particle d) -> bool
14129  """
14130  return _IMP_core.SampleProvenance___ne__(self, *args)
14131 
14132 
14133  def __le__(self, *args):
14134  """
14135  __le__(SampleProvenance self, SampleProvenance o) -> bool
14136  __le__(SampleProvenance self, Particle d) -> bool
14137  """
14138  return _IMP_core.SampleProvenance___le__(self, *args)
14139 
14140 
14141  def __lt__(self, *args):
14142  """
14143  __lt__(SampleProvenance self, SampleProvenance o) -> bool
14144  __lt__(SampleProvenance self, Particle d) -> bool
14145  """
14146  return _IMP_core.SampleProvenance___lt__(self, *args)
14147 
14148 
14149  def __ge__(self, *args):
14150  """
14151  __ge__(SampleProvenance self, SampleProvenance o) -> bool
14152  __ge__(SampleProvenance self, Particle d) -> bool
14153  """
14154  return _IMP_core.SampleProvenance___ge__(self, *args)
14155 
14156 
14157  def __gt__(self, *args):
14158  """
14159  __gt__(SampleProvenance self, SampleProvenance o) -> bool
14160  __gt__(SampleProvenance self, Particle d) -> bool
14161  """
14162  return _IMP_core.SampleProvenance___gt__(self, *args)
14163 
14164 
14165  def __hash__(self):
14166  """__hash__(SampleProvenance self) -> std::size_t"""
14167  return _IMP_core.SampleProvenance___hash__(self)
14168 
14169 
14170  def __str__(self):
14171  """__str__(SampleProvenance self) -> std::string"""
14172  return _IMP_core.SampleProvenance___str__(self)
14173 
14174 
14175  def __repr__(self):
14176  """__repr__(SampleProvenance self) -> std::string"""
14177  return _IMP_core.SampleProvenance___repr__(self)
14178 
14179  __swig_destroy__ = _IMP_core.delete_SampleProvenance
14180  __del__ = lambda self: None
14181 SampleProvenance_swigregister = _IMP_core.SampleProvenance_swigregister
14182 SampleProvenance_swigregister(SampleProvenance)
14183 
14184 def SampleProvenance_get_is_setup(*args):
14185  """
14186  get_is_setup(Model m, ParticleIndex pi) -> bool
14187  SampleProvenance_get_is_setup(_ParticleAdaptor p) -> bool
14188  """
14189  return _IMP_core.SampleProvenance_get_is_setup(*args)
14190 
14191 def SampleProvenance_setup_particle(*args):
14192  """
14193  setup_particle(Model m, ParticleIndex pi, std::string method, int frames, int iterations, int replicas) -> SampleProvenance
14194  setup_particle(_ParticleAdaptor decorator, std::string method, int frames, int iterations, int replicas) -> SampleProvenance
14195  setup_particle(Model m, ParticleIndex pi, std::string method, int frames, int iterations) -> SampleProvenance
14196  setup_particle(_ParticleAdaptor decorator, std::string method, int frames, int iterations) -> SampleProvenance
14197  setup_particle(Model m, ParticleIndex pi, SampleProvenance o) -> SampleProvenance
14198  SampleProvenance_setup_particle(_ParticleAdaptor decorator, SampleProvenance o) -> SampleProvenance
14199  """
14200  return _IMP_core.SampleProvenance_setup_particle(*args)
14201 
14202 class CombineProvenance(Provenance):
14203  """Proxy of C++ IMP::core::CombineProvenance class."""
14204 
14205  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
14206 
14207  def set_number_of_frames(self, frames):
14208  """set_number_of_frames(CombineProvenance self, int frames)"""
14209  return _IMP_core.CombineProvenance_set_number_of_frames(self, frames)
14210 
14211 
14212  def get_number_of_frames(self):
14213  """get_number_of_frames(CombineProvenance self) -> int"""
14214  return _IMP_core.CombineProvenance_get_number_of_frames(self)
14215 
14216 
14217  def set_number_of_runs(self, runs):
14218  """set_number_of_runs(CombineProvenance self, int runs)"""
14219  return _IMP_core.CombineProvenance_set_number_of_runs(self, runs)
14220 
14221 
14222  def get_number_of_runs(self):
14223  """get_number_of_runs(CombineProvenance self) -> int"""
14224  return _IMP_core.CombineProvenance_get_number_of_runs(self)
14225 
14226 
14227  def __init__(self, *args):
14228  """
14229  __init__(IMP::core::CombineProvenance self) -> CombineProvenance
14230  __init__(IMP::core::CombineProvenance self, Model m, ParticleIndex id) -> CombineProvenance
14231  __init__(IMP::core::CombineProvenance self, _ParticleAdaptor d) -> CombineProvenance
14232  """
14233  this = _IMP_core.new_CombineProvenance(*args)
14234  try:
14235  self.this.append(this)
14236  except __builtin__.Exception:
14237  self.this = this
14238 
14239  def get_is_setup(*args):
14240  """
14241  get_is_setup(Model m, ParticleIndex pi) -> bool
14242  get_is_setup(_ParticleAdaptor p) -> bool
14243  """
14244  return _IMP_core.CombineProvenance_get_is_setup(*args)
14245 
14246  get_is_setup = staticmethod(get_is_setup)
14247 
14248  def show(self, *args):
14249  """
14250  show(CombineProvenance self, _ostream out)
14251  show(CombineProvenance self)
14252  """
14253  return _IMP_core.CombineProvenance_show(self, *args)
14254 
14255 
14256  def setup_particle(*args):
14257  """
14258  setup_particle(Model m, ParticleIndex pi, int runs, int frames) -> CombineProvenance
14259  setup_particle(_ParticleAdaptor decorator, int runs, int frames) -> CombineProvenance
14260  setup_particle(Model m, ParticleIndex pi, CombineProvenance o) -> CombineProvenance
14261  setup_particle(_ParticleAdaptor decorator, CombineProvenance o) -> CombineProvenance
14262  """
14263  return _IMP_core.CombineProvenance_setup_particle(*args)
14264 
14265  setup_particle = staticmethod(setup_particle)
14266 
14267  def add_attribute(self, *args):
14268  """
14269  add_attribute(CombineProvenance self, FloatKey k, IMP::Float v, bool opt)
14270  add_attribute(CombineProvenance self, FloatKey a0, IMP::Float a1)
14271  add_attribute(CombineProvenance self, IntKey a0, IMP::Int a1)
14272  add_attribute(CombineProvenance self, StringKey a0, IMP::String a1)
14273  add_attribute(CombineProvenance self, ParticleIndexKey a0, Particle a1)
14274  add_attribute(CombineProvenance self, ObjectKey a0, Object a1)
14275  """
14276  return _IMP_core.CombineProvenance_add_attribute(self, *args)
14277 
14278 
14279  def get_value(self, *args):
14280  """
14281  get_value(CombineProvenance self, FloatKey a0) -> IMP::Float
14282  get_value(CombineProvenance self, IntKey a0) -> IMP::Int
14283  get_value(CombineProvenance self, StringKey a0) -> IMP::String
14284  get_value(CombineProvenance self, ParticleIndexKey a0) -> Particle
14285  get_value(CombineProvenance self, ObjectKey a0) -> Object
14286  """
14287  return _IMP_core.CombineProvenance_get_value(self, *args)
14288 
14289 
14290  def set_value(self, *args):
14291  """
14292  set_value(CombineProvenance self, FloatKey a0, IMP::Float a1)
14293  set_value(CombineProvenance self, IntKey a0, IMP::Int a1)
14294  set_value(CombineProvenance self, StringKey a0, IMP::String a1)
14295  set_value(CombineProvenance self, ParticleIndexKey a0, Particle a1)
14296  set_value(CombineProvenance self, ObjectKey a0, Object a1)
14297  """
14298  return _IMP_core.CombineProvenance_set_value(self, *args)
14299 
14300 
14301  def remove_attribute(self, *args):
14302  """
14303  remove_attribute(CombineProvenance self, FloatKey a0)
14304  remove_attribute(CombineProvenance self, IntKey a0)
14305  remove_attribute(CombineProvenance self, StringKey a0)
14306  remove_attribute(CombineProvenance self, ParticleIndexKey a0)
14307  remove_attribute(CombineProvenance self, ObjectKey a0)
14308  """
14309  return _IMP_core.CombineProvenance_remove_attribute(self, *args)
14310 
14311 
14312  def has_attribute(self, *args):
14313  """
14314  has_attribute(CombineProvenance self, FloatKey a0) -> bool
14315  has_attribute(CombineProvenance self, IntKey a0) -> bool
14316  has_attribute(CombineProvenance self, StringKey a0) -> bool
14317  has_attribute(CombineProvenance self, ParticleIndexKey a0) -> bool
14318  has_attribute(CombineProvenance self, ObjectKey a0) -> bool
14319  """
14320  return _IMP_core.CombineProvenance_has_attribute(self, *args)
14321 
14322 
14323  def get_derivative(self, a0):
14324  """get_derivative(CombineProvenance self, FloatKey a0) -> double"""
14325  return _IMP_core.CombineProvenance_get_derivative(self, a0)
14326 
14327 
14328  def get_name(self):
14329  """get_name(CombineProvenance self) -> std::string"""
14330  return _IMP_core.CombineProvenance_get_name(self)
14331 
14332 
14333  def clear_caches(self):
14334  """clear_caches(CombineProvenance self)"""
14335  return _IMP_core.CombineProvenance_clear_caches(self)
14336 
14337 
14338  def set_name(self, a0):
14339  """set_name(CombineProvenance self, std::string a0)"""
14340  return _IMP_core.CombineProvenance_set_name(self, a0)
14341 
14342 
14343  def set_check_level(self, a0):
14344  """set_check_level(CombineProvenance self, IMP::CheckLevel a0)"""
14345  return _IMP_core.CombineProvenance_set_check_level(self, a0)
14346 
14347 
14348  def add_to_derivative(self, a0, a1, a2):
14349  """add_to_derivative(CombineProvenance self, FloatKey a0, double a1, DerivativeAccumulator a2)"""
14350  return _IMP_core.CombineProvenance_add_to_derivative(self, a0, a1, a2)
14351 
14352 
14353  def set_is_optimized(self, a0, a1):
14354  """set_is_optimized(CombineProvenance self, FloatKey a0, bool a1)"""
14355  return _IMP_core.CombineProvenance_set_is_optimized(self, a0, a1)
14356 
14357 
14358  def get_is_optimized(self, a0):
14359  """get_is_optimized(CombineProvenance self, FloatKey a0) -> bool"""
14360  return _IMP_core.CombineProvenance_get_is_optimized(self, a0)
14361 
14362 
14363  def get_check_level(self):
14364  """get_check_level(CombineProvenance self) -> IMP::CheckLevel"""
14365  return _IMP_core.CombineProvenance_get_check_level(self)
14366 
14367 
14368  def __eq__(self, *args):
14369  """
14370  __eq__(CombineProvenance self, CombineProvenance o) -> bool
14371  __eq__(CombineProvenance self, Particle d) -> bool
14372  """
14373  return _IMP_core.CombineProvenance___eq__(self, *args)
14374 
14375 
14376  def __ne__(self, *args):
14377  """
14378  __ne__(CombineProvenance self, CombineProvenance o) -> bool
14379  __ne__(CombineProvenance self, Particle d) -> bool
14380  """
14381  return _IMP_core.CombineProvenance___ne__(self, *args)
14382 
14383 
14384  def __le__(self, *args):
14385  """
14386  __le__(CombineProvenance self, CombineProvenance o) -> bool
14387  __le__(CombineProvenance self, Particle d) -> bool
14388  """
14389  return _IMP_core.CombineProvenance___le__(self, *args)
14390 
14391 
14392  def __lt__(self, *args):
14393  """
14394  __lt__(CombineProvenance self, CombineProvenance o) -> bool
14395  __lt__(CombineProvenance self, Particle d) -> bool
14396  """
14397  return _IMP_core.CombineProvenance___lt__(self, *args)
14398 
14399 
14400  def __ge__(self, *args):
14401  """
14402  __ge__(CombineProvenance self, CombineProvenance o) -> bool
14403  __ge__(CombineProvenance self, Particle d) -> bool
14404  """
14405  return _IMP_core.CombineProvenance___ge__(self, *args)
14406 
14407 
14408  def __gt__(self, *args):
14409  """
14410  __gt__(CombineProvenance self, CombineProvenance o) -> bool
14411  __gt__(CombineProvenance self, Particle d) -> bool
14412  """
14413  return _IMP_core.CombineProvenance___gt__(self, *args)
14414 
14415 
14416  def __hash__(self):
14417  """__hash__(CombineProvenance self) -> std::size_t"""
14418  return _IMP_core.CombineProvenance___hash__(self)
14419 
14420 
14421  def __str__(self):
14422  """__str__(CombineProvenance self) -> std::string"""
14423  return _IMP_core.CombineProvenance___str__(self)
14424 
14425 
14426  def __repr__(self):
14427  """__repr__(CombineProvenance self) -> std::string"""
14428  return _IMP_core.CombineProvenance___repr__(self)
14429 
14430  __swig_destroy__ = _IMP_core.delete_CombineProvenance
14431  __del__ = lambda self: None
14432 CombineProvenance_swigregister = _IMP_core.CombineProvenance_swigregister
14433 CombineProvenance_swigregister(CombineProvenance)
14434 
14435 def CombineProvenance_get_is_setup(*args):
14436  """
14437  get_is_setup(Model m, ParticleIndex pi) -> bool
14438  CombineProvenance_get_is_setup(_ParticleAdaptor p) -> bool
14439  """
14440  return _IMP_core.CombineProvenance_get_is_setup(*args)
14441 
14442 def CombineProvenance_setup_particle(*args):
14443  """
14444  setup_particle(Model m, ParticleIndex pi, int runs, int frames) -> CombineProvenance
14445  setup_particle(_ParticleAdaptor decorator, int runs, int frames) -> CombineProvenance
14446  setup_particle(Model m, ParticleIndex pi, CombineProvenance o) -> CombineProvenance
14447  CombineProvenance_setup_particle(_ParticleAdaptor decorator, CombineProvenance o) -> CombineProvenance
14448  """
14449  return _IMP_core.CombineProvenance_setup_particle(*args)
14450 
14451 class FilterProvenance(Provenance):
14452  """Proxy of C++ IMP::core::FilterProvenance class."""
14453 
14454  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
14455 
14456  def set_method(self, method):
14457  """set_method(FilterProvenance self, std::string method)"""
14458  return _IMP_core.FilterProvenance_set_method(self, method)
14459 
14460 
14461  def get_method(self):
14462  """get_method(FilterProvenance self) -> std::string"""
14463  return _IMP_core.FilterProvenance_get_method(self)
14464 
14465 
14466  def set_number_of_frames(self, frames):
14467  """set_number_of_frames(FilterProvenance self, int frames)"""
14468  return _IMP_core.FilterProvenance_set_number_of_frames(self, frames)
14469 
14470 
14471  def get_number_of_frames(self):
14472  """get_number_of_frames(FilterProvenance self) -> int"""
14473  return _IMP_core.FilterProvenance_get_number_of_frames(self)
14474 
14475 
14476  def set_threshold(self, threshold):
14477  """set_threshold(FilterProvenance self, double threshold)"""
14478  return _IMP_core.FilterProvenance_set_threshold(self, threshold)
14479 
14480 
14481  def get_threshold(self):
14482  """get_threshold(FilterProvenance self) -> double"""
14483  return _IMP_core.FilterProvenance_get_threshold(self)
14484 
14485 
14486  def __init__(self, *args):
14487  """
14488  __init__(IMP::core::FilterProvenance self) -> FilterProvenance
14489  __init__(IMP::core::FilterProvenance self, Model m, ParticleIndex id) -> FilterProvenance
14490  __init__(IMP::core::FilterProvenance self, _ParticleAdaptor d) -> FilterProvenance
14491  """
14492  this = _IMP_core.new_FilterProvenance(*args)
14493  try:
14494  self.this.append(this)
14495  except __builtin__.Exception:
14496  self.this = this
14497 
14498  def get_is_setup(*args):
14499  """
14500  get_is_setup(Model m, ParticleIndex pi) -> bool
14501  get_is_setup(_ParticleAdaptor p) -> bool
14502  """
14503  return _IMP_core.FilterProvenance_get_is_setup(*args)
14504 
14505  get_is_setup = staticmethod(get_is_setup)
14506 
14507  def show(self, *args):
14508  """
14509  show(FilterProvenance self, _ostream out)
14510  show(FilterProvenance self)
14511  """
14512  return _IMP_core.FilterProvenance_show(self, *args)
14513 
14514 
14515  def setup_particle(*args):
14516  """
14517  setup_particle(Model m, ParticleIndex pi, std::string method, double threshold, int frames) -> FilterProvenance
14518  setup_particle(_ParticleAdaptor decorator, std::string method, double threshold, int frames) -> FilterProvenance
14519  setup_particle(Model m, ParticleIndex pi, FilterProvenance o) -> FilterProvenance
14520  setup_particle(_ParticleAdaptor decorator, FilterProvenance o) -> FilterProvenance
14521  """
14522  return _IMP_core.FilterProvenance_setup_particle(*args)
14523 
14524  setup_particle = staticmethod(setup_particle)
14525 
14526  def add_attribute(self, *args):
14527  """
14528  add_attribute(FilterProvenance self, FloatKey k, IMP::Float v, bool opt)
14529  add_attribute(FilterProvenance self, FloatKey a0, IMP::Float a1)
14530  add_attribute(FilterProvenance self, IntKey a0, IMP::Int a1)
14531  add_attribute(FilterProvenance self, StringKey a0, IMP::String a1)
14532  add_attribute(FilterProvenance self, ParticleIndexKey a0, Particle a1)
14533  add_attribute(FilterProvenance self, ObjectKey a0, Object a1)
14534  """
14535  return _IMP_core.FilterProvenance_add_attribute(self, *args)
14536 
14537 
14538  def get_value(self, *args):
14539  """
14540  get_value(FilterProvenance self, FloatKey a0) -> IMP::Float
14541  get_value(FilterProvenance self, IntKey a0) -> IMP::Int
14542  get_value(FilterProvenance self, StringKey a0) -> IMP::String
14543  get_value(FilterProvenance self, ParticleIndexKey a0) -> Particle
14544  get_value(FilterProvenance self, ObjectKey a0) -> Object
14545  """
14546  return _IMP_core.FilterProvenance_get_value(self, *args)
14547 
14548 
14549  def set_value(self, *args):
14550  """
14551  set_value(FilterProvenance self, FloatKey a0, IMP::Float a1)
14552  set_value(FilterProvenance self, IntKey a0, IMP::Int a1)
14553  set_value(FilterProvenance self, StringKey a0, IMP::String a1)
14554  set_value(FilterProvenance self, ParticleIndexKey a0, Particle a1)
14555  set_value(FilterProvenance self, ObjectKey a0, Object a1)
14556  """
14557  return _IMP_core.FilterProvenance_set_value(self, *args)
14558 
14559 
14560  def remove_attribute(self, *args):
14561  """
14562  remove_attribute(FilterProvenance self, FloatKey a0)
14563  remove_attribute(FilterProvenance self, IntKey a0)
14564  remove_attribute(FilterProvenance self, StringKey a0)
14565  remove_attribute(FilterProvenance self, ParticleIndexKey a0)
14566  remove_attribute(FilterProvenance self, ObjectKey a0)
14567  """
14568  return _IMP_core.FilterProvenance_remove_attribute(self, *args)
14569 
14570 
14571  def has_attribute(self, *args):
14572  """
14573  has_attribute(FilterProvenance self, FloatKey a0) -> bool
14574  has_attribute(FilterProvenance self, IntKey a0) -> bool
14575  has_attribute(FilterProvenance self, StringKey a0) -> bool
14576  has_attribute(FilterProvenance self, ParticleIndexKey a0) -> bool
14577  has_attribute(FilterProvenance self, ObjectKey a0) -> bool
14578  """
14579  return _IMP_core.FilterProvenance_has_attribute(self, *args)
14580 
14581 
14582  def get_derivative(self, a0):
14583  """get_derivative(FilterProvenance self, FloatKey a0) -> double"""
14584  return _IMP_core.FilterProvenance_get_derivative(self, a0)
14585 
14586 
14587  def get_name(self):
14588  """get_name(FilterProvenance self) -> std::string"""
14589  return _IMP_core.FilterProvenance_get_name(self)
14590 
14591 
14592  def clear_caches(self):
14593  """clear_caches(FilterProvenance self)"""
14594  return _IMP_core.FilterProvenance_clear_caches(self)
14595 
14596 
14597  def set_name(self, a0):
14598  """set_name(FilterProvenance self, std::string a0)"""
14599  return _IMP_core.FilterProvenance_set_name(self, a0)
14600 
14601 
14602  def set_check_level(self, a0):
14603  """set_check_level(FilterProvenance self, IMP::CheckLevel a0)"""
14604  return _IMP_core.FilterProvenance_set_check_level(self, a0)
14605 
14606 
14607  def add_to_derivative(self, a0, a1, a2):
14608  """add_to_derivative(FilterProvenance self, FloatKey a0, double a1, DerivativeAccumulator a2)"""
14609  return _IMP_core.FilterProvenance_add_to_derivative(self, a0, a1, a2)
14610 
14611 
14612  def set_is_optimized(self, a0, a1):
14613  """set_is_optimized(FilterProvenance self, FloatKey a0, bool a1)"""
14614  return _IMP_core.FilterProvenance_set_is_optimized(self, a0, a1)
14615 
14616 
14617  def get_is_optimized(self, a0):
14618  """get_is_optimized(FilterProvenance self, FloatKey a0) -> bool"""
14619  return _IMP_core.FilterProvenance_get_is_optimized(self, a0)
14620 
14621 
14622  def get_check_level(self):
14623  """get_check_level(FilterProvenance self) -> IMP::CheckLevel"""
14624  return _IMP_core.FilterProvenance_get_check_level(self)
14625 
14626 
14627  def __eq__(self, *args):
14628  """
14629  __eq__(FilterProvenance self, FilterProvenance o) -> bool
14630  __eq__(FilterProvenance self, Particle d) -> bool
14631  """
14632  return _IMP_core.FilterProvenance___eq__(self, *args)
14633 
14634 
14635  def __ne__(self, *args):
14636  """
14637  __ne__(FilterProvenance self, FilterProvenance o) -> bool
14638  __ne__(FilterProvenance self, Particle d) -> bool
14639  """
14640  return _IMP_core.FilterProvenance___ne__(self, *args)
14641 
14642 
14643  def __le__(self, *args):
14644  """
14645  __le__(FilterProvenance self, FilterProvenance o) -> bool
14646  __le__(FilterProvenance self, Particle d) -> bool
14647  """
14648  return _IMP_core.FilterProvenance___le__(self, *args)
14649 
14650 
14651  def __lt__(self, *args):
14652  """
14653  __lt__(FilterProvenance self, FilterProvenance o) -> bool
14654  __lt__(FilterProvenance self, Particle d) -> bool
14655  """
14656  return _IMP_core.FilterProvenance___lt__(self, *args)
14657 
14658 
14659  def __ge__(self, *args):
14660  """
14661  __ge__(FilterProvenance self, FilterProvenance o) -> bool
14662  __ge__(FilterProvenance self, Particle d) -> bool
14663  """
14664  return _IMP_core.FilterProvenance___ge__(self, *args)
14665 
14666 
14667  def __gt__(self, *args):
14668  """
14669  __gt__(FilterProvenance self, FilterProvenance o) -> bool
14670  __gt__(FilterProvenance self, Particle d) -> bool
14671  """
14672  return _IMP_core.FilterProvenance___gt__(self, *args)
14673 
14674 
14675  def __hash__(self):
14676  """__hash__(FilterProvenance self) -> std::size_t"""
14677  return _IMP_core.FilterProvenance___hash__(self)
14678 
14679 
14680  def __str__(self):
14681  """__str__(FilterProvenance self) -> std::string"""
14682  return _IMP_core.FilterProvenance___str__(self)
14683 
14684 
14685  def __repr__(self):
14686  """__repr__(FilterProvenance self) -> std::string"""
14687  return _IMP_core.FilterProvenance___repr__(self)
14688 
14689  __swig_destroy__ = _IMP_core.delete_FilterProvenance
14690  __del__ = lambda self: None
14691 FilterProvenance_swigregister = _IMP_core.FilterProvenance_swigregister
14692 FilterProvenance_swigregister(FilterProvenance)
14693 
14694 def FilterProvenance_get_is_setup(*args):
14695  """
14696  get_is_setup(Model m, ParticleIndex pi) -> bool
14697  FilterProvenance_get_is_setup(_ParticleAdaptor p) -> bool
14698  """
14699  return _IMP_core.FilterProvenance_get_is_setup(*args)
14700 
14701 def FilterProvenance_setup_particle(*args):
14702  """
14703  setup_particle(Model m, ParticleIndex pi, std::string method, double threshold, int frames) -> FilterProvenance
14704  setup_particle(_ParticleAdaptor decorator, std::string method, double threshold, int frames) -> FilterProvenance
14705  setup_particle(Model m, ParticleIndex pi, FilterProvenance o) -> FilterProvenance
14706  FilterProvenance_setup_particle(_ParticleAdaptor decorator, FilterProvenance o) -> FilterProvenance
14707  """
14708  return _IMP_core.FilterProvenance_setup_particle(*args)
14709 
14710 class ClusterProvenance(Provenance):
14711  """Proxy of C++ IMP::core::ClusterProvenance class."""
14712 
14713  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
14714 
14715  def set_number_of_members(self, members):
14716  """set_number_of_members(ClusterProvenance self, int members)"""
14717  return _IMP_core.ClusterProvenance_set_number_of_members(self, members)
14718 
14719 
14720  def get_number_of_members(self):
14721  """get_number_of_members(ClusterProvenance self) -> int"""
14722  return _IMP_core.ClusterProvenance_get_number_of_members(self)
14723 
14724 
14725  def __init__(self, *args):
14726  """
14727  __init__(IMP::core::ClusterProvenance self) -> ClusterProvenance
14728  __init__(IMP::core::ClusterProvenance self, Model m, ParticleIndex id) -> ClusterProvenance
14729  __init__(IMP::core::ClusterProvenance self, _ParticleAdaptor d) -> ClusterProvenance
14730  """
14731  this = _IMP_core.new_ClusterProvenance(*args)
14732  try:
14733  self.this.append(this)
14734  except __builtin__.Exception:
14735  self.this = this
14736 
14737  def get_is_setup(*args):
14738  """
14739  get_is_setup(Model m, ParticleIndex pi) -> bool
14740  get_is_setup(_ParticleAdaptor p) -> bool
14741  """
14742  return _IMP_core.ClusterProvenance_get_is_setup(*args)
14743 
14744  get_is_setup = staticmethod(get_is_setup)
14745 
14746  def show(self, *args):
14747  """
14748  show(ClusterProvenance self, _ostream out)
14749  show(ClusterProvenance self)
14750  """
14751  return _IMP_core.ClusterProvenance_show(self, *args)
14752 
14753 
14754  def setup_particle(*args):
14755  """
14756  setup_particle(Model m, ParticleIndex pi, int members) -> ClusterProvenance
14757  setup_particle(_ParticleAdaptor decorator, int members) -> ClusterProvenance
14758  setup_particle(Model m, ParticleIndex pi, ClusterProvenance o) -> ClusterProvenance
14759  setup_particle(_ParticleAdaptor decorator, ClusterProvenance o) -> ClusterProvenance
14760  """
14761  return _IMP_core.ClusterProvenance_setup_particle(*args)
14762 
14763  setup_particle = staticmethod(setup_particle)
14764 
14765  def add_attribute(self, *args):
14766  """
14767  add_attribute(ClusterProvenance self, FloatKey k, IMP::Float v, bool opt)
14768  add_attribute(ClusterProvenance self, FloatKey a0, IMP::Float a1)
14769  add_attribute(ClusterProvenance self, IntKey a0, IMP::Int a1)
14770  add_attribute(ClusterProvenance self, StringKey a0, IMP::String a1)
14771  add_attribute(ClusterProvenance self, ParticleIndexKey a0, Particle a1)
14772  add_attribute(ClusterProvenance self, ObjectKey a0, Object a1)
14773  """
14774  return _IMP_core.ClusterProvenance_add_attribute(self, *args)
14775 
14776 
14777  def get_value(self, *args):
14778  """
14779  get_value(ClusterProvenance self, FloatKey a0) -> IMP::Float
14780  get_value(ClusterProvenance self, IntKey a0) -> IMP::Int
14781  get_value(ClusterProvenance self, StringKey a0) -> IMP::String
14782  get_value(ClusterProvenance self, ParticleIndexKey a0) -> Particle
14783  get_value(ClusterProvenance self, ObjectKey a0) -> Object
14784  """
14785  return _IMP_core.ClusterProvenance_get_value(self, *args)
14786 
14787 
14788  def set_value(self, *args):
14789  """
14790  set_value(ClusterProvenance self, FloatKey a0, IMP::Float a1)
14791  set_value(ClusterProvenance self, IntKey a0, IMP::Int a1)
14792  set_value(ClusterProvenance self, StringKey a0, IMP::String a1)
14793  set_value(ClusterProvenance self, ParticleIndexKey a0, Particle a1)
14794  set_value(ClusterProvenance self, ObjectKey a0, Object a1)
14795  """
14796  return _IMP_core.ClusterProvenance_set_value(self, *args)
14797 
14798 
14799  def remove_attribute(self, *args):
14800  """
14801  remove_attribute(ClusterProvenance self, FloatKey a0)
14802  remove_attribute(ClusterProvenance self, IntKey a0)
14803  remove_attribute(ClusterProvenance self, StringKey a0)
14804  remove_attribute(ClusterProvenance self, ParticleIndexKey a0)
14805  remove_attribute(ClusterProvenance self, ObjectKey a0)
14806  """
14807  return _IMP_core.ClusterProvenance_remove_attribute(self, *args)
14808 
14809 
14810  def has_attribute(self, *args):
14811  """
14812  has_attribute(ClusterProvenance self, FloatKey a0) -> bool
14813  has_attribute(ClusterProvenance self, IntKey a0) -> bool
14814  has_attribute(ClusterProvenance self, StringKey a0) -> bool
14815  has_attribute(ClusterProvenance self, ParticleIndexKey a0) -> bool
14816  has_attribute(ClusterProvenance self, ObjectKey a0) -> bool
14817  """
14818  return _IMP_core.ClusterProvenance_has_attribute(self, *args)
14819 
14820 
14821  def get_derivative(self, a0):
14822  """get_derivative(ClusterProvenance self, FloatKey a0) -> double"""
14823  return _IMP_core.ClusterProvenance_get_derivative(self, a0)
14824 
14825 
14826  def get_name(self):
14827  """get_name(ClusterProvenance self) -> std::string"""
14828  return _IMP_core.ClusterProvenance_get_name(self)
14829 
14830 
14831  def clear_caches(self):
14832  """clear_caches(ClusterProvenance self)"""
14833  return _IMP_core.ClusterProvenance_clear_caches(self)
14834 
14835 
14836  def set_name(self, a0):
14837  """set_name(ClusterProvenance self, std::string a0)"""
14838  return _IMP_core.ClusterProvenance_set_name(self, a0)
14839 
14840 
14841  def set_check_level(self, a0):
14842  """set_check_level(ClusterProvenance self, IMP::CheckLevel a0)"""
14843  return _IMP_core.ClusterProvenance_set_check_level(self, a0)
14844 
14845 
14846  def add_to_derivative(self, a0, a1, a2):
14847  """add_to_derivative(ClusterProvenance self, FloatKey a0, double a1, DerivativeAccumulator a2)"""
14848  return _IMP_core.ClusterProvenance_add_to_derivative(self, a0, a1, a2)
14849 
14850 
14851  def set_is_optimized(self, a0, a1):
14852  """set_is_optimized(ClusterProvenance self, FloatKey a0, bool a1)"""
14853  return _IMP_core.ClusterProvenance_set_is_optimized(self, a0, a1)
14854 
14855 
14856  def get_is_optimized(self, a0):
14857  """get_is_optimized(ClusterProvenance self, FloatKey a0) -> bool"""
14858  return _IMP_core.ClusterProvenance_get_is_optimized(self, a0)
14859 
14860 
14861  def get_check_level(self):
14862  """get_check_level(ClusterProvenance self) -> IMP::CheckLevel"""
14863  return _IMP_core.ClusterProvenance_get_check_level(self)
14864 
14865 
14866  def __eq__(self, *args):
14867  """
14868  __eq__(ClusterProvenance self, ClusterProvenance o) -> bool
14869  __eq__(ClusterProvenance self, Particle d) -> bool
14870  """
14871  return _IMP_core.ClusterProvenance___eq__(self, *args)
14872 
14873 
14874  def __ne__(self, *args):
14875  """
14876  __ne__(ClusterProvenance self, ClusterProvenance o) -> bool
14877  __ne__(ClusterProvenance self, Particle d) -> bool
14878  """
14879  return _IMP_core.ClusterProvenance___ne__(self, *args)
14880 
14881 
14882  def __le__(self, *args):
14883  """
14884  __le__(ClusterProvenance self, ClusterProvenance o) -> bool
14885  __le__(ClusterProvenance self, Particle d) -> bool
14886  """
14887  return _IMP_core.ClusterProvenance___le__(self, *args)
14888 
14889 
14890  def __lt__(self, *args):
14891  """
14892  __lt__(ClusterProvenance self, ClusterProvenance o) -> bool
14893  __lt__(ClusterProvenance self, Particle d) -> bool
14894  """
14895  return _IMP_core.ClusterProvenance___lt__(self, *args)
14896 
14897 
14898  def __ge__(self, *args):
14899  """
14900  __ge__(ClusterProvenance self, ClusterProvenance o) -> bool
14901  __ge__(ClusterProvenance self, Particle d) -> bool
14902  """
14903  return _IMP_core.ClusterProvenance___ge__(self, *args)
14904 
14905 
14906  def __gt__(self, *args):
14907  """
14908  __gt__(ClusterProvenance self, ClusterProvenance o) -> bool
14909  __gt__(ClusterProvenance self, Particle d) -> bool
14910  """
14911  return _IMP_core.ClusterProvenance___gt__(self, *args)
14912 
14913 
14914  def __hash__(self):
14915  """__hash__(ClusterProvenance self) -> std::size_t"""
14916  return _IMP_core.ClusterProvenance___hash__(self)
14917 
14918 
14919  def __str__(self):
14920  """__str__(ClusterProvenance self) -> std::string"""
14921  return _IMP_core.ClusterProvenance___str__(self)
14922 
14923 
14924  def __repr__(self):
14925  """__repr__(ClusterProvenance self) -> std::string"""
14926  return _IMP_core.ClusterProvenance___repr__(self)
14927 
14928  __swig_destroy__ = _IMP_core.delete_ClusterProvenance
14929  __del__ = lambda self: None
14930 ClusterProvenance_swigregister = _IMP_core.ClusterProvenance_swigregister
14931 ClusterProvenance_swigregister(ClusterProvenance)
14932 
14933 def ClusterProvenance_get_is_setup(*args):
14934  """
14935  get_is_setup(Model m, ParticleIndex pi) -> bool
14936  ClusterProvenance_get_is_setup(_ParticleAdaptor p) -> bool
14937  """
14938  return _IMP_core.ClusterProvenance_get_is_setup(*args)
14939 
14940 def ClusterProvenance_setup_particle(*args):
14941  """
14942  setup_particle(Model m, ParticleIndex pi, int members) -> ClusterProvenance
14943  setup_particle(_ParticleAdaptor decorator, int members) -> ClusterProvenance
14944  setup_particle(Model m, ParticleIndex pi, ClusterProvenance o) -> ClusterProvenance
14945  ClusterProvenance_setup_particle(_ParticleAdaptor decorator, ClusterProvenance o) -> ClusterProvenance
14946  """
14947  return _IMP_core.ClusterProvenance_setup_particle(*args)
14948 
14949 class ScriptProvenance(Provenance):
14950  """Proxy of C++ IMP::core::ScriptProvenance class."""
14951 
14952  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
14953 
14954  def set_filename(self, filename):
14955  """set_filename(ScriptProvenance self, std::string filename)"""
14956  return _IMP_core.ScriptProvenance_set_filename(self, filename)
14957 
14958 
14959  def get_filename(self):
14960  """get_filename(ScriptProvenance self) -> std::string"""
14961  return _IMP_core.ScriptProvenance_get_filename(self)
14962 
14963 
14964  def __init__(self, *args):
14965  """
14966  __init__(IMP::core::ScriptProvenance self) -> ScriptProvenance
14967  __init__(IMP::core::ScriptProvenance self, Model m, ParticleIndex id) -> ScriptProvenance
14968  __init__(IMP::core::ScriptProvenance self, _ParticleAdaptor d) -> ScriptProvenance
14969  """
14970  this = _IMP_core.new_ScriptProvenance(*args)
14971  try:
14972  self.this.append(this)
14973  except __builtin__.Exception:
14974  self.this = this
14975 
14976  def get_is_setup(*args):
14977  """
14978  get_is_setup(Model m, ParticleIndex pi) -> bool
14979  get_is_setup(_ParticleAdaptor p) -> bool
14980  """
14981  return _IMP_core.ScriptProvenance_get_is_setup(*args)
14982 
14983  get_is_setup = staticmethod(get_is_setup)
14984 
14985  def show(self, *args):
14986  """
14987  show(ScriptProvenance self, _ostream out)
14988  show(ScriptProvenance self)
14989  """
14990  return _IMP_core.ScriptProvenance_show(self, *args)
14991 
14992 
14993  def setup_particle(*args):
14994  """
14995  setup_particle(Model m, ParticleIndex pi, std::string filename) -> ScriptProvenance
14996  setup_particle(_ParticleAdaptor decorator, std::string filename) -> ScriptProvenance
14997  setup_particle(Model m, ParticleIndex pi, ScriptProvenance o) -> ScriptProvenance
14998  setup_particle(_ParticleAdaptor decorator, ScriptProvenance o) -> ScriptProvenance
14999  """
15000  return _IMP_core.ScriptProvenance_setup_particle(*args)
15001 
15002  setup_particle = staticmethod(setup_particle)
15003 
15004  def add_attribute(self, *args):
15005  """
15006  add_attribute(ScriptProvenance self, FloatKey k, IMP::Float v, bool opt)
15007  add_attribute(ScriptProvenance self, FloatKey a0, IMP::Float a1)
15008  add_attribute(ScriptProvenance self, IntKey a0, IMP::Int a1)
15009  add_attribute(ScriptProvenance self, StringKey a0, IMP::String a1)
15010  add_attribute(ScriptProvenance self, ParticleIndexKey a0, Particle a1)
15011  add_attribute(ScriptProvenance self, ObjectKey a0, Object a1)
15012  """
15013  return _IMP_core.ScriptProvenance_add_attribute(self, *args)
15014 
15015 
15016  def get_value(self, *args):
15017  """
15018  get_value(ScriptProvenance self, FloatKey a0) -> IMP::Float
15019  get_value(ScriptProvenance self, IntKey a0) -> IMP::Int
15020  get_value(ScriptProvenance self, StringKey a0) -> IMP::String
15021  get_value(ScriptProvenance self, ParticleIndexKey a0) -> Particle
15022  get_value(ScriptProvenance self, ObjectKey a0) -> Object
15023  """
15024  return _IMP_core.ScriptProvenance_get_value(self, *args)
15025 
15026 
15027  def set_value(self, *args):
15028  """
15029  set_value(ScriptProvenance self, FloatKey a0, IMP::Float a1)
15030  set_value(ScriptProvenance self, IntKey a0, IMP::Int a1)
15031  set_value(ScriptProvenance self, StringKey a0, IMP::String a1)
15032  set_value(ScriptProvenance self, ParticleIndexKey a0, Particle a1)
15033  set_value(ScriptProvenance self, ObjectKey a0, Object a1)
15034  """
15035  return _IMP_core.ScriptProvenance_set_value(self, *args)
15036 
15037 
15038  def remove_attribute(self, *args):
15039  """
15040  remove_attribute(ScriptProvenance self, FloatKey a0)
15041  remove_attribute(ScriptProvenance self, IntKey a0)
15042  remove_attribute(ScriptProvenance self, StringKey a0)
15043  remove_attribute(ScriptProvenance self, ParticleIndexKey a0)
15044  remove_attribute(ScriptProvenance self, ObjectKey a0)
15045  """
15046  return _IMP_core.ScriptProvenance_remove_attribute(self, *args)
15047 
15048 
15049  def has_attribute(self, *args):
15050  """
15051  has_attribute(ScriptProvenance self, FloatKey a0) -> bool
15052  has_attribute(ScriptProvenance self, IntKey a0) -> bool
15053  has_attribute(ScriptProvenance self, StringKey a0) -> bool
15054  has_attribute(ScriptProvenance self, ParticleIndexKey a0) -> bool
15055  has_attribute(ScriptProvenance self, ObjectKey a0) -> bool
15056  """
15057  return _IMP_core.ScriptProvenance_has_attribute(self, *args)
15058 
15059 
15060  def get_derivative(self, a0):
15061  """get_derivative(ScriptProvenance self, FloatKey a0) -> double"""
15062  return _IMP_core.ScriptProvenance_get_derivative(self, a0)
15063 
15064 
15065  def get_name(self):
15066  """get_name(ScriptProvenance self) -> std::string"""
15067  return _IMP_core.ScriptProvenance_get_name(self)
15068 
15069 
15070  def clear_caches(self):
15071  """clear_caches(ScriptProvenance self)"""
15072  return _IMP_core.ScriptProvenance_clear_caches(self)
15073 
15074 
15075  def set_name(self, a0):
15076  """set_name(ScriptProvenance self, std::string a0)"""
15077  return _IMP_core.ScriptProvenance_set_name(self, a0)
15078 
15079 
15080  def set_check_level(self, a0):
15081  """set_check_level(ScriptProvenance self, IMP::CheckLevel a0)"""
15082  return _IMP_core.ScriptProvenance_set_check_level(self, a0)
15083 
15084 
15085  def add_to_derivative(self, a0, a1, a2):
15086  """add_to_derivative(ScriptProvenance self, FloatKey a0, double a1, DerivativeAccumulator a2)"""
15087  return _IMP_core.ScriptProvenance_add_to_derivative(self, a0, a1, a2)
15088 
15089 
15090  def set_is_optimized(self, a0, a1):
15091  """set_is_optimized(ScriptProvenance self, FloatKey a0, bool a1)"""
15092  return _IMP_core.ScriptProvenance_set_is_optimized(self, a0, a1)
15093 
15094 
15095  def get_is_optimized(self, a0):
15096  """get_is_optimized(ScriptProvenance self, FloatKey a0) -> bool"""
15097  return _IMP_core.ScriptProvenance_get_is_optimized(self, a0)
15098 
15099 
15100  def get_check_level(self):
15101  """get_check_level(ScriptProvenance self) -> IMP::CheckLevel"""
15102  return _IMP_core.ScriptProvenance_get_check_level(self)
15103 
15104 
15105  def __eq__(self, *args):
15106  """
15107  __eq__(ScriptProvenance self, ScriptProvenance o) -> bool
15108  __eq__(ScriptProvenance self, Particle d) -> bool
15109  """
15110  return _IMP_core.ScriptProvenance___eq__(self, *args)
15111 
15112 
15113  def __ne__(self, *args):
15114  """
15115  __ne__(ScriptProvenance self, ScriptProvenance o) -> bool
15116  __ne__(ScriptProvenance self, Particle d) -> bool
15117  """
15118  return _IMP_core.ScriptProvenance___ne__(self, *args)
15119 
15120 
15121  def __le__(self, *args):
15122  """
15123  __le__(ScriptProvenance self, ScriptProvenance o) -> bool
15124  __le__(ScriptProvenance self, Particle d) -> bool
15125  """
15126  return _IMP_core.ScriptProvenance___le__(self, *args)
15127 
15128 
15129  def __lt__(self, *args):
15130  """
15131  __lt__(ScriptProvenance self, ScriptProvenance o) -> bool
15132  __lt__(ScriptProvenance self, Particle d) -> bool
15133  """
15134  return _IMP_core.ScriptProvenance___lt__(self, *args)
15135 
15136 
15137  def __ge__(self, *args):
15138  """
15139  __ge__(ScriptProvenance self, ScriptProvenance o) -> bool
15140  __ge__(ScriptProvenance self, Particle d) -> bool
15141  """
15142  return _IMP_core.ScriptProvenance___ge__(self, *args)
15143 
15144 
15145  def __gt__(self, *args):
15146  """
15147  __gt__(ScriptProvenance self, ScriptProvenance o) -> bool
15148  __gt__(ScriptProvenance self, Particle d) -> bool
15149  """
15150  return _IMP_core.ScriptProvenance___gt__(self, *args)
15151 
15152 
15153  def __hash__(self):
15154  """__hash__(ScriptProvenance self) -> std::size_t"""
15155  return _IMP_core.ScriptProvenance___hash__(self)
15156 
15157 
15158  def __str__(self):
15159  """__str__(ScriptProvenance self) -> std::string"""
15160  return _IMP_core.ScriptProvenance___str__(self)
15161 
15162 
15163  def __repr__(self):
15164  """__repr__(ScriptProvenance self) -> std::string"""
15165  return _IMP_core.ScriptProvenance___repr__(self)
15166 
15167  __swig_destroy__ = _IMP_core.delete_ScriptProvenance
15168  __del__ = lambda self: None
15169 ScriptProvenance_swigregister = _IMP_core.ScriptProvenance_swigregister
15170 ScriptProvenance_swigregister(ScriptProvenance)
15171 
15172 def ScriptProvenance_get_is_setup(*args):
15173  """
15174  get_is_setup(Model m, ParticleIndex pi) -> bool
15175  ScriptProvenance_get_is_setup(_ParticleAdaptor p) -> bool
15176  """
15177  return _IMP_core.ScriptProvenance_get_is_setup(*args)
15178 
15179 def ScriptProvenance_setup_particle(*args):
15180  """
15181  setup_particle(Model m, ParticleIndex pi, std::string filename) -> ScriptProvenance
15182  setup_particle(_ParticleAdaptor decorator, std::string filename) -> ScriptProvenance
15183  setup_particle(Model m, ParticleIndex pi, ScriptProvenance o) -> ScriptProvenance
15184  ScriptProvenance_setup_particle(_ParticleAdaptor decorator, ScriptProvenance o) -> ScriptProvenance
15185  """
15186  return _IMP_core.ScriptProvenance_setup_particle(*args)
15187 
15188 class SoftwareProvenance(Provenance):
15189  """Proxy of C++ IMP::core::SoftwareProvenance class."""
15190 
15191  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
15192 
15193  def set_software_name(self, name):
15194  """set_software_name(SoftwareProvenance self, std::string name)"""
15195  return _IMP_core.SoftwareProvenance_set_software_name(self, name)
15196 
15197 
15198  def get_software_name(self):
15199  """get_software_name(SoftwareProvenance self) -> std::string"""
15200  return _IMP_core.SoftwareProvenance_get_software_name(self)
15201 
15202 
15203  def set_version(self, version):
15204  """set_version(SoftwareProvenance self, std::string version)"""
15205  return _IMP_core.SoftwareProvenance_set_version(self, version)
15206 
15207 
15208  def get_version(self):
15209  """get_version(SoftwareProvenance self) -> std::string"""
15210  return _IMP_core.SoftwareProvenance_get_version(self)
15211 
15212 
15213  def set_location(self, location):
15214  """set_location(SoftwareProvenance self, std::string location)"""
15215  return _IMP_core.SoftwareProvenance_set_location(self, location)
15216 
15217 
15218  def get_location(self):
15219  """get_location(SoftwareProvenance self) -> std::string"""
15220  return _IMP_core.SoftwareProvenance_get_location(self)
15221 
15222 
15223  def __init__(self, *args):
15224  """
15225  __init__(IMP::core::SoftwareProvenance self) -> SoftwareProvenance
15226  __init__(IMP::core::SoftwareProvenance self, Model m, ParticleIndex id) -> SoftwareProvenance
15227  __init__(IMP::core::SoftwareProvenance self, _ParticleAdaptor d) -> SoftwareProvenance
15228  """
15229  this = _IMP_core.new_SoftwareProvenance(*args)
15230  try:
15231  self.this.append(this)
15232  except __builtin__.Exception:
15233  self.this = this
15234 
15235  def get_is_setup(*args):
15236  """
15237  get_is_setup(Model m, ParticleIndex pi) -> bool
15238  get_is_setup(_ParticleAdaptor p) -> bool
15239  """
15240  return _IMP_core.SoftwareProvenance_get_is_setup(*args)
15241 
15242  get_is_setup = staticmethod(get_is_setup)
15243 
15244  def show(self, *args):
15245  """
15246  show(SoftwareProvenance self, _ostream out)
15247  show(SoftwareProvenance self)
15248  """
15249  return _IMP_core.SoftwareProvenance_show(self, *args)
15250 
15251 
15252  def setup_particle(*args):
15253  """
15254  setup_particle(Model m, ParticleIndex pi, std::string name, std::string version, std::string location) -> SoftwareProvenance
15255  setup_particle(_ParticleAdaptor decorator, std::string name, std::string version, std::string location) -> SoftwareProvenance
15256  setup_particle(Model m, ParticleIndex pi, SoftwareProvenance o) -> SoftwareProvenance
15257  setup_particle(_ParticleAdaptor decorator, SoftwareProvenance o) -> SoftwareProvenance
15258  """
15259  return _IMP_core.SoftwareProvenance_setup_particle(*args)
15260 
15261  setup_particle = staticmethod(setup_particle)
15262 
15263  def add_attribute(self, *args):
15264  """
15265  add_attribute(SoftwareProvenance self, FloatKey k, IMP::Float v, bool opt)
15266  add_attribute(SoftwareProvenance self, FloatKey a0, IMP::Float a1)
15267  add_attribute(SoftwareProvenance self, IntKey a0, IMP::Int a1)
15268  add_attribute(SoftwareProvenance self, StringKey a0, IMP::String a1)
15269  add_attribute(SoftwareProvenance self, ParticleIndexKey a0, Particle a1)
15270  add_attribute(SoftwareProvenance self, ObjectKey a0, Object a1)
15271  """
15272  return _IMP_core.SoftwareProvenance_add_attribute(self, *args)
15273 
15274 
15275  def get_value(self, *args):
15276  """
15277  get_value(SoftwareProvenance self, FloatKey a0) -> IMP::Float
15278  get_value(SoftwareProvenance self, IntKey a0) -> IMP::Int
15279  get_value(SoftwareProvenance self, StringKey a0) -> IMP::String
15280  get_value(SoftwareProvenance self, ParticleIndexKey a0) -> Particle
15281  get_value(SoftwareProvenance self, ObjectKey a0) -> Object
15282  """
15283  return _IMP_core.SoftwareProvenance_get_value(self, *args)
15284 
15285 
15286  def set_value(self, *args):
15287  """
15288  set_value(SoftwareProvenance self, FloatKey a0, IMP::Float a1)
15289  set_value(SoftwareProvenance self, IntKey a0, IMP::Int a1)
15290  set_value(SoftwareProvenance self, StringKey a0, IMP::String a1)
15291  set_value(SoftwareProvenance self, ParticleIndexKey a0, Particle a1)
15292  set_value(SoftwareProvenance self, ObjectKey a0, Object a1)
15293  """
15294  return _IMP_core.SoftwareProvenance_set_value(self, *args)
15295 
15296 
15297  def remove_attribute(self, *args):
15298  """
15299  remove_attribute(SoftwareProvenance self, FloatKey a0)
15300  remove_attribute(SoftwareProvenance self, IntKey a0)
15301  remove_attribute(SoftwareProvenance self, StringKey a0)
15302  remove_attribute(SoftwareProvenance self, ParticleIndexKey a0)
15303  remove_attribute(SoftwareProvenance self, ObjectKey a0)
15304  """
15305  return _IMP_core.SoftwareProvenance_remove_attribute(self, *args)
15306 
15307 
15308  def has_attribute(self, *args):
15309  """
15310  has_attribute(SoftwareProvenance self, FloatKey a0) -> bool
15311  has_attribute(SoftwareProvenance self, IntKey a0) -> bool
15312  has_attribute(SoftwareProvenance self, StringKey a0) -> bool
15313  has_attribute(SoftwareProvenance self, ParticleIndexKey a0) -> bool
15314  has_attribute(SoftwareProvenance self, ObjectKey a0) -> bool
15315  """
15316  return _IMP_core.SoftwareProvenance_has_attribute(self, *args)
15317 
15318 
15319  def get_derivative(self, a0):
15320  """get_derivative(SoftwareProvenance self, FloatKey a0) -> double"""
15321  return _IMP_core.SoftwareProvenance_get_derivative(self, a0)
15322 
15323 
15324  def get_name(self):
15325  """get_name(SoftwareProvenance self) -> std::string"""
15326  return _IMP_core.SoftwareProvenance_get_name(self)
15327 
15328 
15329  def clear_caches(self):
15330  """clear_caches(SoftwareProvenance self)"""
15331  return _IMP_core.SoftwareProvenance_clear_caches(self)
15332 
15333 
15334  def set_name(self, a0):
15335  """set_name(SoftwareProvenance self, std::string a0)"""
15336  return _IMP_core.SoftwareProvenance_set_name(self, a0)
15337 
15338 
15339  def set_check_level(self, a0):
15340  """set_check_level(SoftwareProvenance self, IMP::CheckLevel a0)"""
15341  return _IMP_core.SoftwareProvenance_set_check_level(self, a0)
15342 
15343 
15344  def add_to_derivative(self, a0, a1, a2):
15345  """add_to_derivative(SoftwareProvenance self, FloatKey a0, double a1, DerivativeAccumulator a2)"""
15346  return _IMP_core.SoftwareProvenance_add_to_derivative(self, a0, a1, a2)
15347 
15348 
15349  def set_is_optimized(self, a0, a1):
15350  """set_is_optimized(SoftwareProvenance self, FloatKey a0, bool a1)"""
15351  return _IMP_core.SoftwareProvenance_set_is_optimized(self, a0, a1)
15352 
15353 
15354  def get_is_optimized(self, a0):
15355  """get_is_optimized(SoftwareProvenance self, FloatKey a0) -> bool"""
15356  return _IMP_core.SoftwareProvenance_get_is_optimized(self, a0)
15357 
15358 
15359  def get_check_level(self):
15360  """get_check_level(SoftwareProvenance self) -> IMP::CheckLevel"""
15361  return _IMP_core.SoftwareProvenance_get_check_level(self)
15362 
15363 
15364  def __eq__(self, *args):
15365  """
15366  __eq__(SoftwareProvenance self, SoftwareProvenance o) -> bool
15367  __eq__(SoftwareProvenance self, Particle d) -> bool
15368  """
15369  return _IMP_core.SoftwareProvenance___eq__(self, *args)
15370 
15371 
15372  def __ne__(self, *args):
15373  """
15374  __ne__(SoftwareProvenance self, SoftwareProvenance o) -> bool
15375  __ne__(SoftwareProvenance self, Particle d) -> bool
15376  """
15377  return _IMP_core.SoftwareProvenance___ne__(self, *args)
15378 
15379 
15380  def __le__(self, *args):
15381  """
15382  __le__(SoftwareProvenance self, SoftwareProvenance o) -> bool
15383  __le__(SoftwareProvenance self, Particle d) -> bool
15384  """
15385  return _IMP_core.SoftwareProvenance___le__(self, *args)
15386 
15387 
15388  def __lt__(self, *args):
15389  """
15390  __lt__(SoftwareProvenance self, SoftwareProvenance o) -> bool
15391  __lt__(SoftwareProvenance self, Particle d) -> bool
15392  """
15393  return _IMP_core.SoftwareProvenance___lt__(self, *args)
15394 
15395 
15396  def __ge__(self, *args):
15397  """
15398  __ge__(SoftwareProvenance self, SoftwareProvenance o) -> bool
15399  __ge__(SoftwareProvenance self, Particle d) -> bool
15400  """
15401  return _IMP_core.SoftwareProvenance___ge__(self, *args)
15402 
15403 
15404  def __gt__(self, *args):
15405  """
15406  __gt__(SoftwareProvenance self, SoftwareProvenance o) -> bool
15407  __gt__(SoftwareProvenance self, Particle d) -> bool
15408  """
15409  return _IMP_core.SoftwareProvenance___gt__(self, *args)
15410 
15411 
15412  def __hash__(self):
15413  """__hash__(SoftwareProvenance self) -> std::size_t"""
15414  return _IMP_core.SoftwareProvenance___hash__(self)
15415 
15416 
15417  def __str__(self):
15418  """__str__(SoftwareProvenance self) -> std::string"""
15419  return _IMP_core.SoftwareProvenance___str__(self)
15420 
15421 
15422  def __repr__(self):
15423  """__repr__(SoftwareProvenance self) -> std::string"""
15424  return _IMP_core.SoftwareProvenance___repr__(self)
15425 
15426  __swig_destroy__ = _IMP_core.delete_SoftwareProvenance
15427  __del__ = lambda self: None
15428 SoftwareProvenance_swigregister = _IMP_core.SoftwareProvenance_swigregister
15429 SoftwareProvenance_swigregister(SoftwareProvenance)
15430 
15431 def SoftwareProvenance_get_is_setup(*args):
15432  """
15433  get_is_setup(Model m, ParticleIndex pi) -> bool
15434  SoftwareProvenance_get_is_setup(_ParticleAdaptor p) -> bool
15435  """
15436  return _IMP_core.SoftwareProvenance_get_is_setup(*args)
15437 
15438 def SoftwareProvenance_setup_particle(*args):
15439  """
15440  setup_particle(Model m, ParticleIndex pi, std::string name, std::string version, std::string location) -> SoftwareProvenance
15441  setup_particle(_ParticleAdaptor decorator, std::string name, std::string version, std::string location) -> SoftwareProvenance
15442  setup_particle(Model m, ParticleIndex pi, SoftwareProvenance o) -> SoftwareProvenance
15443  SoftwareProvenance_setup_particle(_ParticleAdaptor decorator, SoftwareProvenance o) -> SoftwareProvenance
15444  """
15445  return _IMP_core.SoftwareProvenance_setup_particle(*args)
15446 
15447 class Provenanced(IMP.Decorator):
15448  """Proxy of C++ IMP::core::Provenanced class."""
15449 
15450  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
15451 
15452  def get_provenance(self):
15453  """get_provenance(Provenanced self) -> Provenance"""
15454  return _IMP_core.Provenanced_get_provenance(self)
15455 
15456 
15457  def set_provenance(self, p):
15458  """set_provenance(Provenanced self, Provenance p)"""
15459  return _IMP_core.Provenanced_set_provenance(self, p)
15460 
15461 
15462  def __init__(self, *args):
15463  """
15464  __init__(IMP::core::Provenanced self) -> Provenanced
15465  __init__(IMP::core::Provenanced self, Model m, ParticleIndex id) -> Provenanced
15466  __init__(IMP::core::Provenanced self, _ParticleAdaptor d) -> Provenanced
15467  """
15468  this = _IMP_core.new_Provenanced(*args)
15469  try:
15470  self.this.append(this)
15471  except __builtin__.Exception:
15472  self.this = this
15473 
15474  def get_is_setup(*args):
15475  """
15476  get_is_setup(Model m, ParticleIndex pi) -> bool
15477  get_is_setup(_ParticleAdaptor p) -> bool
15478  """
15479  return _IMP_core.Provenanced_get_is_setup(*args)
15480 
15481  get_is_setup = staticmethod(get_is_setup)
15482 
15483  def show(self, *args):
15484  """
15485  show(Provenanced self, _ostream out)
15486  show(Provenanced self)
15487  """
15488  return _IMP_core.Provenanced_show(self, *args)
15489 
15490 
15491  def setup_particle(*args):
15492  """
15493  setup_particle(Model m, ParticleIndex pi, Provenance p) -> Provenanced
15494  setup_particle(_ParticleAdaptor decorator, Provenance p) -> Provenanced
15495  """
15496  return _IMP_core.Provenanced_setup_particle(*args)
15497 
15498  setup_particle = staticmethod(setup_particle)
15499 
15500  def add_attribute(self, *args):
15501  """
15502  add_attribute(Provenanced self, FloatKey k, IMP::Float v, bool opt)
15503  add_attribute(Provenanced self, FloatKey a0, IMP::Float a1)
15504  add_attribute(Provenanced self, IntKey a0, IMP::Int a1)
15505  add_attribute(Provenanced self, StringKey a0, IMP::String a1)
15506  add_attribute(Provenanced self, ParticleIndexKey a0, Particle a1)
15507  add_attribute(Provenanced self, ObjectKey a0, Object a1)
15508  """
15509  return _IMP_core.Provenanced_add_attribute(self, *args)
15510 
15511 
15512  def get_value(self, *args):
15513  """
15514  get_value(Provenanced self, FloatKey a0) -> IMP::Float
15515  get_value(Provenanced self, IntKey a0) -> IMP::Int
15516  get_value(Provenanced self, StringKey a0) -> IMP::String
15517  get_value(Provenanced self, ParticleIndexKey a0) -> Particle
15518  get_value(Provenanced self, ObjectKey a0) -> Object
15519  """
15520  return _IMP_core.Provenanced_get_value(self, *args)
15521 
15522 
15523  def set_value(self, *args):
15524  """
15525  set_value(Provenanced self, FloatKey a0, IMP::Float a1)
15526  set_value(Provenanced self, IntKey a0, IMP::Int a1)
15527  set_value(Provenanced self, StringKey a0, IMP::String a1)
15528  set_value(Provenanced self, ParticleIndexKey a0, Particle a1)
15529  set_value(Provenanced self, ObjectKey a0, Object a1)
15530  """
15531  return _IMP_core.Provenanced_set_value(self, *args)
15532 
15533 
15534  def remove_attribute(self, *args):
15535  """
15536  remove_attribute(Provenanced self, FloatKey a0)
15537  remove_attribute(Provenanced self, IntKey a0)
15538  remove_attribute(Provenanced self, StringKey a0)
15539  remove_attribute(Provenanced self, ParticleIndexKey a0)
15540  remove_attribute(Provenanced self, ObjectKey a0)
15541  """
15542  return _IMP_core.Provenanced_remove_attribute(self, *args)
15543 
15544 
15545  def has_attribute(self, *args):
15546  """
15547  has_attribute(Provenanced self, FloatKey a0) -> bool
15548  has_attribute(Provenanced self, IntKey a0) -> bool
15549  has_attribute(Provenanced self, StringKey a0) -> bool
15550  has_attribute(Provenanced self, ParticleIndexKey a0) -> bool
15551  has_attribute(Provenanced self, ObjectKey a0) -> bool
15552  """
15553  return _IMP_core.Provenanced_has_attribute(self, *args)
15554 
15555 
15556  def get_derivative(self, a0):
15557  """get_derivative(Provenanced self, FloatKey a0) -> double"""
15558  return _IMP_core.Provenanced_get_derivative(self, a0)
15559 
15560 
15561  def get_name(self):
15562  """get_name(Provenanced self) -> std::string"""
15563  return _IMP_core.Provenanced_get_name(self)
15564 
15565 
15566  def clear_caches(self):
15567  """clear_caches(Provenanced self)"""
15568  return _IMP_core.Provenanced_clear_caches(self)
15569 
15570 
15571  def set_name(self, a0):
15572  """set_name(Provenanced self, std::string a0)"""
15573  return _IMP_core.Provenanced_set_name(self, a0)
15574 
15575 
15576  def set_check_level(self, a0):
15577  """set_check_level(Provenanced self, IMP::CheckLevel a0)"""
15578  return _IMP_core.Provenanced_set_check_level(self, a0)
15579 
15580 
15581  def add_to_derivative(self, a0, a1, a2):
15582  """add_to_derivative(Provenanced self, FloatKey a0, double a1, DerivativeAccumulator a2)"""
15583  return _IMP_core.Provenanced_add_to_derivative(self, a0, a1, a2)
15584 
15585 
15586  def set_is_optimized(self, a0, a1):
15587  """set_is_optimized(Provenanced self, FloatKey a0, bool a1)"""
15588  return _IMP_core.Provenanced_set_is_optimized(self, a0, a1)
15589 
15590 
15591  def get_is_optimized(self, a0):
15592  """get_is_optimized(Provenanced self, FloatKey a0) -> bool"""
15593  return _IMP_core.Provenanced_get_is_optimized(self, a0)
15594 
15595 
15596  def get_check_level(self):
15597  """get_check_level(Provenanced self) -> IMP::CheckLevel"""
15598  return _IMP_core.Provenanced_get_check_level(self)
15599 
15600 
15601  def __eq__(self, *args):
15602  """
15603  __eq__(Provenanced self, Provenanced o) -> bool
15604  __eq__(Provenanced self, Particle d) -> bool
15605  """
15606  return _IMP_core.Provenanced___eq__(self, *args)
15607 
15608 
15609  def __ne__(self, *args):
15610  """
15611  __ne__(Provenanced self, Provenanced o) -> bool
15612  __ne__(Provenanced self, Particle d) -> bool
15613  """
15614  return _IMP_core.Provenanced___ne__(self, *args)
15615 
15616 
15617  def __le__(self, *args):
15618  """
15619  __le__(Provenanced self, Provenanced o) -> bool
15620  __le__(Provenanced self, Particle d) -> bool
15621  """
15622  return _IMP_core.Provenanced___le__(self, *args)
15623 
15624 
15625  def __lt__(self, *args):
15626  """
15627  __lt__(Provenanced self, Provenanced o) -> bool
15628  __lt__(Provenanced self, Particle d) -> bool
15629  """
15630  return _IMP_core.Provenanced___lt__(self, *args)
15631 
15632 
15633  def __ge__(self, *args):
15634  """
15635  __ge__(Provenanced self, Provenanced o) -> bool
15636  __ge__(Provenanced self, Particle d) -> bool
15637  """
15638  return _IMP_core.Provenanced___ge__(self, *args)
15639 
15640 
15641  def __gt__(self, *args):
15642  """
15643  __gt__(Provenanced self, Provenanced o) -> bool
15644  __gt__(Provenanced self, Particle d) -> bool
15645  """
15646  return _IMP_core.Provenanced___gt__(self, *args)
15647 
15648 
15649  def __hash__(self):
15650  """__hash__(Provenanced self) -> std::size_t"""
15651  return _IMP_core.Provenanced___hash__(self)
15652 
15653 
15654  def __str__(self):
15655  """__str__(Provenanced self) -> std::string"""
15656  return _IMP_core.Provenanced___str__(self)
15657 
15658 
15659  def __repr__(self):
15660  """__repr__(Provenanced self) -> std::string"""
15661  return _IMP_core.Provenanced___repr__(self)
15662 
15663  __swig_destroy__ = _IMP_core.delete_Provenanced
15664  __del__ = lambda self: None
15665 Provenanced_swigregister = _IMP_core.Provenanced_swigregister
15666 Provenanced_swigregister(Provenanced)
15667 
15668 def Provenanced_get_is_setup(*args):
15669  """
15670  get_is_setup(Model m, ParticleIndex pi) -> bool
15671  Provenanced_get_is_setup(_ParticleAdaptor p) -> bool
15672  """
15673  return _IMP_core.Provenanced_get_is_setup(*args)
15674 
15675 def Provenanced_setup_particle(*args):
15676  """
15677  setup_particle(Model m, ParticleIndex pi, Provenance p) -> Provenanced
15678  Provenanced_setup_particle(_ParticleAdaptor decorator, Provenance p) -> Provenanced
15679  """
15680  return _IMP_core.Provenanced_setup_particle(*args)
15681 
15682 
15683 def add_provenance(m, pi, p):
15684  """add_provenance(Model m, ParticleIndex pi, Provenance p)"""
15685  return _IMP_core.add_provenance(m, pi, p)
15686 
15687 def create_clone(p):
15688  """create_clone(Provenance p) -> Provenance"""
15689  return _IMP_core.create_clone(p)
15690 
15692  """
15693  get_transformation_aligning_first_to_second(IMP::ParticlesTemp const & a, IMP::ParticlesTemp const & b) -> Transformation3D
15694  get_transformation_aligning_first_to_second(IMP::ParticlesTemp const & a, IMP::Vector< IMP::algebra::VectorD< 3 > > const & b) -> Transformation3D
15695  get_transformation_aligning_first_to_second(IMP::Vector< IMP::algebra::VectorD< 3 > > const & a, IMP::ParticlesTemp const & b) -> Transformation3D
15696  """
15697  return _IMP_core.get_transformation_aligning_first_to_second(*args)
15698 
15699 def create_restraint(ps, pp):
15700  """create_restraint(PairScore ps, IMP::ParticlePair pp) -> Restraint"""
15701  return _IMP_core.create_restraint(ps, pp)
15703  """Proxy of C++ IMP::core::TruncatedHarmonic<(IMP::core::LOWER)> class."""
15704 
15705  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
15706 
15707  def __init__(self, *args):
15708  """
15709  __init__(IMP::core::TruncatedHarmonic<(IMP::core::LOWER)> self, IMP::Float center, IMP::Float k, IMP::Float threshold, IMP::Float limit) -> TruncatedHarmonicLowerBound
15710  __init__(IMP::core::TruncatedHarmonic<(IMP::core::LOWER)> self, IMP::Float center, IMP::Float k, IMP::Float threshold) -> TruncatedHarmonicLowerBound
15711  """
15712  this = _IMP_core.new_TruncatedHarmonicLowerBound(*args)
15713  try:
15714  self.this.append(this)
15715  except __builtin__.Exception:
15716  self.this = this
15717 
15718  def get_version_info(self):
15719  """get_version_info(TruncatedHarmonicLowerBound self) -> VersionInfo"""
15720  return _IMP_core.TruncatedHarmonicLowerBound_get_version_info(self)
15721 
15722 
15723  def __str__(self):
15724  """__str__(TruncatedHarmonicLowerBound self) -> std::string"""
15725  return _IMP_core.TruncatedHarmonicLowerBound___str__(self)
15726 
15727 
15728  def __repr__(self):
15729  """__repr__(TruncatedHarmonicLowerBound self) -> std::string"""
15730  return _IMP_core.TruncatedHarmonicLowerBound___repr__(self)
15731 
15732 
15733  @staticmethod
15734  def get_from(o):
15735  return _object_cast_to_TruncatedHarmonic(o)
15736 
15737 TruncatedHarmonicLowerBound_swigregister = _IMP_core.TruncatedHarmonicLowerBound_swigregister
15738 TruncatedHarmonicLowerBound_swigregister(TruncatedHarmonicLowerBound)
15739 
15741  """Proxy of C++ IMP::core::TruncatedHarmonic<(IMP::core::UPPER)> class."""
15742 
15743  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
15744 
15745  def __init__(self, *args):
15746  """
15747  __init__(IMP::core::TruncatedHarmonic<(IMP::core::UPPER)> self, IMP::Float center, IMP::Float k, IMP::Float threshold, IMP::Float limit) -> TruncatedHarmonicUpperBound
15748  __init__(IMP::core::TruncatedHarmonic<(IMP::core::UPPER)> self, IMP::Float center, IMP::Float k, IMP::Float threshold) -> TruncatedHarmonicUpperBound
15749  """
15750  this = _IMP_core.new_TruncatedHarmonicUpperBound(*args)
15751  try:
15752  self.this.append(this)
15753  except __builtin__.Exception:
15754  self.this = this
15755 
15756  def get_version_info(self):
15757  """get_version_info(TruncatedHarmonicUpperBound self) -> VersionInfo"""
15758  return _IMP_core.TruncatedHarmonicUpperBound_get_version_info(self)
15759 
15760 
15761  def __str__(self):
15762  """__str__(TruncatedHarmonicUpperBound self) -> std::string"""
15763  return _IMP_core.TruncatedHarmonicUpperBound___str__(self)
15764 
15765 
15766  def __repr__(self):
15767  """__repr__(TruncatedHarmonicUpperBound self) -> std::string"""
15768  return _IMP_core.TruncatedHarmonicUpperBound___repr__(self)
15769 
15770 
15771  @staticmethod
15772  def get_from(o):
15773  return _object_cast_to_TruncatedHarmonic(o)
15774 
15775 TruncatedHarmonicUpperBound_swigregister = _IMP_core.TruncatedHarmonicUpperBound_swigregister
15776 TruncatedHarmonicUpperBound_swigregister(TruncatedHarmonicUpperBound)
15777 
15779  """Proxy of C++ IMP::core::TruncatedHarmonic<(IMP::core::BOTH)> class."""
15780 
15781  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
15782 
15783  def __init__(self, *args):
15784  """
15785  __init__(IMP::core::TruncatedHarmonic<(IMP::core::BOTH)> self, IMP::Float center, IMP::Float k, IMP::Float threshold, IMP::Float limit) -> TruncatedHarmonicBound
15786  __init__(IMP::core::TruncatedHarmonic<(IMP::core::BOTH)> self, IMP::Float center, IMP::Float k, IMP::Float threshold) -> TruncatedHarmonicBound
15787  """
15788  this = _IMP_core.new_TruncatedHarmonicBound(*args)
15789  try:
15790  self.this.append(this)
15791  except __builtin__.Exception:
15792  self.this = this
15793 
15794  def get_version_info(self):
15795  """get_version_info(TruncatedHarmonicBound self) -> VersionInfo"""
15796  return _IMP_core.TruncatedHarmonicBound_get_version_info(self)
15797 
15798 
15799  def __str__(self):
15800  """__str__(TruncatedHarmonicBound self) -> std::string"""
15801  return _IMP_core.TruncatedHarmonicBound___str__(self)
15802 
15803 
15804  def __repr__(self):
15805  """__repr__(TruncatedHarmonicBound self) -> std::string"""
15806  return _IMP_core.TruncatedHarmonicBound___repr__(self)
15807 
15808 
15809  @staticmethod
15810  def get_from(o):
15811  return _object_cast_to_TruncatedHarmonic(o)
15812 
15813 TruncatedHarmonicBound_swigregister = _IMP_core.TruncatedHarmonicBound_swigregister
15814 TruncatedHarmonicBound_swigregister(TruncatedHarmonicBound)
15815 
15816 class ParticleType(IMP._Value):
15817  """Proxy of C++ IMP::Key<(34897493)> class."""
15818 
15819  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
15820 
15821  def __init__(self, *args):
15822  """
15823  __init__(IMP::Key<(34897493)> self) -> ParticleType
15824  __init__(IMP::Key<(34897493)> self, std::string const & c, bool is_implicit_add_permitted=True) -> ParticleType
15825  __init__(IMP::Key<(34897493)> self, std::string const & c) -> ParticleType
15826  __init__(IMP::Key<(34897493)> self, unsigned int i) -> ParticleType
15827  """
15828  this = _IMP_core.new_ParticleType(*args)
15829  try:
15830  self.this.append(this)
15831  except __builtin__.Exception:
15832  self.this = this
15833 
15834  def add_key(sc):
15835  """add_key(std::string sc) -> unsigned int"""
15836  return _IMP_core.ParticleType_add_key(sc)
15837 
15838  add_key = staticmethod(add_key)
15839 
15840  def get_key_exists(sc):
15841  """get_key_exists(std::string sc) -> bool"""
15842  return _IMP_core.ParticleType_get_key_exists(sc)
15843 
15844  get_key_exists = staticmethod(get_key_exists)
15845 
15846  def get_string(self):
15847  """get_string(ParticleType self) -> std::string const"""
15848  return _IMP_core.ParticleType_get_string(self)
15849 
15850 
15851  def __cmp__(self, o):
15852  """__cmp__(ParticleType self, ParticleType o) -> int"""
15853  return _IMP_core.ParticleType___cmp__(self, o)
15854 
15855 
15856  def __eq__(self, o):
15857  """__eq__(ParticleType self, ParticleType o) -> bool"""
15858  return _IMP_core.ParticleType___eq__(self, o)
15859 
15860 
15861  def __ne__(self, o):
15862  """__ne__(ParticleType self, ParticleType o) -> bool"""
15863  return _IMP_core.ParticleType___ne__(self, o)
15864 
15865 
15866  def __lt__(self, o):
15867  """__lt__(ParticleType self, ParticleType o) -> bool"""
15868  return _IMP_core.ParticleType___lt__(self, o)
15869 
15870 
15871  def __gt__(self, o):
15872  """__gt__(ParticleType self, ParticleType o) -> bool"""
15873  return _IMP_core.ParticleType___gt__(self, o)
15874 
15875 
15876  def __ge__(self, o):
15877  """__ge__(ParticleType self, ParticleType o) -> bool"""
15878  return _IMP_core.ParticleType___ge__(self, o)
15879 
15880 
15881  def __le__(self, o):
15882  """__le__(ParticleType self, ParticleType o) -> bool"""
15883  return _IMP_core.ParticleType___le__(self, o)
15884 
15885 
15886  def __hash__(self):
15887  """__hash__(ParticleType self) -> std::size_t"""
15888  return _IMP_core.ParticleType___hash__(self)
15889 
15890 
15891  def show(self, *args):
15892  """
15893  show(ParticleType self, _ostream out)
15894  show(ParticleType self)
15895  """
15896  return _IMP_core.ParticleType_show(self, *args)
15897 
15898 
15899  def add_alias(old_key, new_name):
15900  """add_alias(ParticleType old_key, std::string new_name) -> ParticleType"""
15901  return _IMP_core.ParticleType_add_alias(old_key, new_name)
15902 
15903  add_alias = staticmethod(add_alias)
15904 
15905  def get_number_of_keys():
15906  """get_number_of_keys() -> unsigned int"""
15907  return _IMP_core.ParticleType_get_number_of_keys()
15908 
15909  get_number_of_keys = staticmethod(get_number_of_keys)
15910 
15911  def get_index(self):
15912  """get_index(ParticleType self) -> unsigned int"""
15913  return _IMP_core.ParticleType_get_index(self)
15914 
15915 
15916  def show_all(out):
15917  """show_all(_ostream out)"""
15918  return _IMP_core.ParticleType_show_all(out)
15919 
15920  show_all = staticmethod(show_all)
15921 
15922  def get_all_strings():
15923  """get_all_strings() -> IMP::Vector< std::string >"""
15924  return _IMP_core.ParticleType_get_all_strings()
15925 
15926  get_all_strings = staticmethod(get_all_strings)
15927 
15928  def get_number_unique():
15929  """get_number_unique() -> unsigned int"""
15930  return _IMP_core.ParticleType_get_number_unique()
15931 
15932  get_number_unique = staticmethod(get_number_unique)
15933 
15934  def __str__(self):
15935  """__str__(ParticleType self) -> std::string"""
15936  return _IMP_core.ParticleType___str__(self)
15937 
15938 
15939  def __repr__(self):
15940  """__repr__(ParticleType self) -> std::string"""
15941  return _IMP_core.ParticleType___repr__(self)
15942 
15943  __swig_destroy__ = _IMP_core.delete_ParticleType
15944  __del__ = lambda self: None
15945 ParticleType_swigregister = _IMP_core.ParticleType_swigregister
15946 ParticleType_swigregister(ParticleType)
15947 
15948 def ParticleType_add_key(sc):
15949  """ParticleType_add_key(std::string sc) -> unsigned int"""
15950  return _IMP_core.ParticleType_add_key(sc)
15951 
15952 def ParticleType_get_key_exists(sc):
15953  """ParticleType_get_key_exists(std::string sc) -> bool"""
15954  return _IMP_core.ParticleType_get_key_exists(sc)
15955 
15956 def ParticleType_add_alias(old_key, new_name):
15957  """ParticleType_add_alias(ParticleType old_key, std::string new_name) -> ParticleType"""
15958  return _IMP_core.ParticleType_add_alias(old_key, new_name)
15959 
15960 def ParticleType_get_number_of_keys():
15961  """ParticleType_get_number_of_keys() -> unsigned int"""
15962  return _IMP_core.ParticleType_get_number_of_keys()
15963 
15964 def ParticleType_show_all(out):
15965  """ParticleType_show_all(_ostream out)"""
15966  return _IMP_core.ParticleType_show_all(out)
15967 
15968 def ParticleType_get_all_strings():
15969  """ParticleType_get_all_strings() -> IMP::Vector< std::string >"""
15970  return _IMP_core.ParticleType_get_all_strings()
15971 
15972 def ParticleType_get_number_unique():
15973  """ParticleType_get_number_unique() -> unsigned int"""
15974  return _IMP_core.ParticleType_get_number_unique()
15975 
15977  """Proxy of C++ IMP::core::GenericAttributeSingletonScore<(UnaryFunction)> class."""
15978 
15979  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
15980  __repr__ = _swig_repr
15981 
15982  def __init__(self, f, k):
15983  """__init__(IMP::core::GenericAttributeSingletonScore<(UnaryFunction)> self, UnaryFunction f, FloatKey k) -> AttributeSingletonScore"""
15984  this = _IMP_core.new_AttributeSingletonScore(f, k)
15985  try:
15986  self.this.append(this)
15987  except __builtin__.Exception:
15988  self.this = this
15989 
15990  def do_get_inputs(self, m, pis):
15991  """do_get_inputs(AttributeSingletonScore self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
15992  return _IMP_core.AttributeSingletonScore_do_get_inputs(self, m, pis)
15993 
15994 
15995  def get_unary_function(self):
15996  """get_unary_function(AttributeSingletonScore self) -> UnaryFunction"""
15997  return _IMP_core.AttributeSingletonScore_get_unary_function(self)
15998 
15999 
16000  def get_version_info(self):
16001  """get_version_info(AttributeSingletonScore self) -> VersionInfo"""
16002  return _IMP_core.AttributeSingletonScore_get_version_info(self)
16003 
16004 AttributeSingletonScore_swigregister = _IMP_core.AttributeSingletonScore_swigregister
16005 AttributeSingletonScore_swigregister(AttributeSingletonScore)
16006 
16007 
16009  """create_generic_attribute_singleton_score(UnaryFunction uf, FloatKey k) -> AttributeSingletonScore"""
16010  return _IMP_core.create_generic_attribute_singleton_score(uf, k)
16011 class BoundingBox3DSingletonScore(IMP.SingletonScore):
16012  """Proxy of C++ IMP::core::GenericBoundingBox3DSingletonScore<(UnaryFunction)> class."""
16013 
16014  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
16015  __repr__ = _swig_repr
16016 
16017  def __init__(self, f, bb):
16018  """__init__(IMP::core::GenericBoundingBox3DSingletonScore<(UnaryFunction)> self, UnaryFunction f, BoundingBox3D bb) -> BoundingBox3DSingletonScore"""
16019  this = _IMP_core.new_BoundingBox3DSingletonScore(f, bb)
16020  try:
16021  self.this.append(this)
16022  except __builtin__.Exception:
16023  self.this = this
16024 
16025  def do_get_inputs(self, m, pis):
16026  """do_get_inputs(BoundingBox3DSingletonScore self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
16027  return _IMP_core.BoundingBox3DSingletonScore_do_get_inputs(self, m, pis)
16028 
16029 
16030  def get_version_info(self):
16031  """get_version_info(BoundingBox3DSingletonScore self) -> VersionInfo"""
16032  return _IMP_core.BoundingBox3DSingletonScore_get_version_info(self)
16033 
16034 BoundingBox3DSingletonScore_swigregister = _IMP_core.BoundingBox3DSingletonScore_swigregister
16035 BoundingBox3DSingletonScore_swigregister(BoundingBox3DSingletonScore)
16036 
16037 
16038 def create_bounding_box_3d_singleton_score(f, bb):
16039  """create_bounding_box_3d_singleton_score(UnaryFunction f, BoundingBox3D bb) -> BoundingBox3DSingletonScore"""
16040  return _IMP_core.create_bounding_box_3d_singleton_score(f, bb)
16041 class BoundingSphere3DSingletonScore(IMP.SingletonScore):
16042  """Proxy of C++ IMP::core::GenericBoundingSphere3DSingletonScore<(UnaryFunction)> class."""
16043 
16044  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
16045  __repr__ = _swig_repr
16046 
16047  def __init__(self, f, sphere):
16048  """__init__(IMP::core::GenericBoundingSphere3DSingletonScore<(UnaryFunction)> self, UnaryFunction f, Sphere3D sphere) -> BoundingSphere3DSingletonScore"""
16049  this = _IMP_core.new_BoundingSphere3DSingletonScore(f, sphere)
16050  try:
16051  self.this.append(this)
16052  except __builtin__.Exception:
16053  self.this = this
16054 
16055  def do_get_inputs(self, m, pis):
16056  """do_get_inputs(BoundingSphere3DSingletonScore self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
16057  return _IMP_core.BoundingSphere3DSingletonScore_do_get_inputs(self, m, pis)
16058 
16059 
16060  def get_version_info(self):
16061  """get_version_info(BoundingSphere3DSingletonScore self) -> VersionInfo"""
16062  return _IMP_core.BoundingSphere3DSingletonScore_get_version_info(self)
16063 
16064 BoundingSphere3DSingletonScore_swigregister = _IMP_core.BoundingSphere3DSingletonScore_swigregister
16065 BoundingSphere3DSingletonScore_swigregister(BoundingSphere3DSingletonScore)
16066 
16067 
16068 def create_bounding_sphere_3d_singleton_score(f, sphere):
16069  """create_bounding_sphere_3d_singleton_score(UnaryFunction f, Sphere3D sphere) -> BoundingSphere3DSingletonScore"""
16070  return _IMP_core.create_bounding_sphere_3d_singleton_score(f, sphere)
16072  """Proxy of C++ IMP::core::GenericDistanceToSingletonScore<(UnaryFunction)> class."""
16073 
16074  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
16075  __repr__ = _swig_repr
16076 
16077  def __init__(self, f, pt):
16078  """__init__(IMP::core::GenericDistanceToSingletonScore<(UnaryFunction)> self, UnaryFunction f, Vector3D pt) -> DistanceToSingletonScore"""
16079  this = _IMP_core.new_DistanceToSingletonScore(f, pt)
16080  try:
16081  self.this.append(this)
16082  except __builtin__.Exception:
16083  self.this = this
16084 
16085  def do_get_inputs(self, m, pis):
16086  """do_get_inputs(DistanceToSingletonScore self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
16087  return _IMP_core.DistanceToSingletonScore_do_get_inputs(self, m, pis)
16088 
16089 
16090  def get_version_info(self):
16091  """get_version_info(DistanceToSingletonScore self) -> VersionInfo"""
16092  return _IMP_core.DistanceToSingletonScore_get_version_info(self)
16093 
16094 DistanceToSingletonScore_swigregister = _IMP_core.DistanceToSingletonScore_swigregister
16095 DistanceToSingletonScore_swigregister(DistanceToSingletonScore)
16096 
16097 
16098 def create_distance_to_singleton_score(f, pt):
16099  """create_distance_to_singleton_score(UnaryFunction f, Vector3D pt) -> DistanceToSingletonScore"""
16100  return _IMP_core.create_distance_to_singleton_score(f, pt)
16101 
16102 
16103 def get_all_provenance(p, types=[StructureProvenance, SampleProvenance,
16104  CombineProvenance, FilterProvenance,
16105  ClusterProvenance, ScriptProvenance,
16106  SoftwareProvenance]):
16107  """Yield all provenance decorators of the given types for the particle.
16108  By default, all provenance types are returned. Provenance is returned
16109  in order, most recent first. If the particle has no provenance
16110  information, an empty generator is returned."""
16111  if Provenanced.get_is_setup(p):
16112  prov = Provenanced(p).get_provenance()
16113  while prov:
16114  for c in types:
16115  if c.get_is_setup(prov):
16116  yield c(prov)
16117  prov = prov.get_previous()
16118 
16120  """Tag the given particle with the current Python script.
16121  This is a noop if the particle is already so tagged."""
16122  main = sys.modules['__main__']
16123 # Can't do anything if running from an interactive interpreter
16124  if not hasattr(main, '__file__'):
16125  return
16126  f = IMP.get_absolute_path(main.__file__)
16127  for prov in get_all_provenance(p, types=[ScriptProvenance]):
16128  if prov.get_filename() == f:
16129  return
16130  m = p.get_model()
16131  provp = IMP.Particle(m)
16132  provp.set_name('script')
16133  prov = ScriptProvenance.setup_particle(provp, f)
16134  add_provenance(m, p, prov)
16135 
16136 def add_software_provenance(p, name, version, location):
16137  """Tag the given particle with the software used to create it.
16138  This is a noop if the particle is already so tagged."""
16139  for prov in get_all_provenance(p, types=[SoftwareProvenance]):
16140  if prov.get_software_name() == name and prov.get_version() == version \
16141  and prov.get_location() == location:
16142  return
16143  m = p.get_model()
16144  provp = IMP.Particle(m)
16145  provp.set_name('software')
16146  prov = SoftwareProvenance.setup_particle(provp, name, version, location)
16147  add_provenance(m, p, prov)
16148 
16150  """Tag the given particle as being created by the current version of IMP."""
16151  add_software_provenance(p, name="Integrative Modeling Platform (IMP)",
16152  version=IMP.get_module_version(),
16153  location="https://integrativemodeling.org")
16154 
16155 
16156 def get_module_version():
16157  """get_module_version() -> std::string const"""
16158  return _IMP_core.get_module_version()
16159 
16160 def get_example_path(fname):
16161  """get_example_path(std::string fname) -> std::string"""
16162  return _IMP_core.get_example_path(fname)
16163 
16164 def get_data_path(fname):
16165  """get_data_path(std::string fname) -> std::string"""
16166  return _IMP_core.get_data_path(fname)
16167 
16168 from . import _version_check
16169 _version_check.check_version(get_module_version())
16170 __version__ = get_module_version()
16171 
16172 
16173 
F visit_breadth_first(HD d, F f)
Apply the visitor to each particle, breadth first.
A base class for geometry contained in particles.
A base class for modifiers of ParticlesTemp.
GenericDistanceToSingletonScore< UnaryFunction > DistanceToSingletonScore
double get_kt(double T)
Return kT for a given temperature in units of [kcal/mol].
Abstract class for scoring object(s) of type ParticleIndexPair.
Definition: PairScore.h:37
double get_height(const Surface &s, const XYZR &d)
Get height of sphere above surface.
Definition: Surface.h:129
algebra::Transformation3D get_transformation_aligning_first_to_second(XYZsOrVector3ds a, XYZsOrVector3ds b)
double get_mean(const cv::Mat &mat, const cvIntMat &mask)
CheckLevel get_check_level()
Get the current audit mode.
Definition: exception.h:81
def add_script_provenance
Tag the given particle with the current Python script.
Abstract predicate function.
Definition: QuadPredicate.h:31
Restraint * create_restraint(Score *s, const typename Score::Argument &t, std::string name=std::string())
Definition: generic.h:36
ParticleIndex get_root_rigid_body(RigidMember m)
Return the index of the outer-most rigid body containing the member.
algebra::ReferenceFrame3D get_initial_reference_frame(Model *m, const ParticleIndexes &pis)
The base class for geometry.
F visit_depth_first(HD d, F &f)
Apply functor F to each particle, traversing the hierarchy depth first.
XYZRs create_xyzr_particles(Model *m, unsigned int num, Float radius, Float box_side=10)
Create a set of particles with random coordinates.
A base class for geometry contained in particles.
const algebra::Vector3D get_vector_geometry(XYZ d)
Definition: XYZ.h:135
double get_angle(Direction a, Direction b)
Get angle between directions.
A base class for geometry from a set of particles.
double get_dihedral(XYZ a, XYZ b, XYZ c, XYZ d)
Compute the dihedral angle (in radians) between the four particles.
Make CGAL functionality available to IMP.
Provenance create_clone(Provenance p)
Clone provenance (including previous provenance)
ParticlesTemp create_rigid_bodies(Model *m, unsigned int n, bool no_members=false)
std::string get_data_path(std::string file_name)
Return the full path to one of this module's data files.
void add_rigid_body_cache_key(ObjectKey k)
Base class for all samplers.
Definition: Sampler.h:31
Key< 34897493 > ParticleType
An IMP::Key object for identifying types of particles by strings.
Definition: Typed.h:28
algebra::Vector3D get_centroid(const XYZs &ps)
Get the centroid.
void add_particle(RMF::FileHandle fh, Particle *hs)
GenericHierarchies get_leaves(Hierarchy mhd)
Get all the leaves of the bit of hierarchy.
Composable functors to implement scores via compile-time composition.
std::string get_example_path(std::string file_name)
Return the full path to one of this module's example files.
GenericHierarchies get_all_descendants(Hierarchy mhd)
Get all the particles in the subtree.
A base class for geometry from a set of particles.
def add_imp_provenance
Tag the given particle as being created by the current version of IMP.
display::Geometries create_blame_geometries(const RestraintsTemp &rs, const ParticlesTemp &ps, double max=NO_MAX, std::string name=std::string())
void show_rigid_body_hierarchy(RigidBody rb, TextOutput out=TextOutput(std::cout))
Implement a constraint on the Model.
Definition: Constraint.h:49
void add_restraint(RMF::FileHandle fh, Restraint *hs)
def add_software_provenance
Tag the given particle with the software used to create it.
Abstract predicate function.
Ints get_index(const ParticlesTemp &particles, const Subset &subset, const Subsets &excluded)
Common base class for heavy weight IMP objects.
Definition: Object.h:106
int get_number_of_frames(const ::npctransport_proto::Assignment &config, double time_step)
Abstract class for scoring object(s) of type ParticleIndex.
ScoreStates maintain invariants in the Model.
Definition: ScoreState.h:53
Base class for all optimizers.
Definition: Optimizer.h:46
GenericAttributeSingletonScore< UnaryFunction > AttributeSingletonScore
SurfaceGeometry * create_geometry(const Surface s, std::string name=std::string("SurfaceGeometry%1%"))
Create a geometry from a Surface.
Definition: Surface.h:191
void add_restraints(RMF::FileHandle fh, const Restraints &hs)
algebra::BoundingBoxD< 3 > get_bounding_box(const XYZRs &ps)
Get the bounding box.
Version and module information for Objects.
Definition: VersionInfo.h:28
GenericHierarchies get_internal(Hierarchy mhd)
Get all the non-leaves of the bit of hierarchy.
Interface to specialized Particle types (e.g. atoms)
Definition: Decorator.h:118
std::ostream & show(Hierarchy h, std::ostream &out=std::cout)
Print the hierarchy using a given decorator to display each node.
std::string get_absolute_path(std::string file)
Convert a possibly relative path to an absolute path.
algebra::Sphere3D get_enclosing_sphere(const XYZs &v)
Get a sphere enclosing the set of XYZRs.
Base class for optimizers that act on individual attributes.
SurfaceGeometry * get_constrained_surface_geometry(const Surface s, std::string name="SurfaceGeometry%1%")
Get surface geometry constrained to the surface.
Definition: Surface.h:236
Abstract predicate function.
Definition: PairPredicate.h:31
General purpose algebraic and geometric methods that are expected to be used by a wide variety of IMP...
Represents a scoring function on the model.
void set_vector_geometry(XYZ d, const algebra::Vector3D &v)
Definition: XYZ.h:131
Shared optimizer state that is invoked upon commitment of new coordinates.
Hierarchy get_root(Hierarchy h)
Return the root of the hierarchy.
Abstract predicate function.
Abstract class to implement hierarchical methods.
Definition: Refiner.h:34
double get_depth(const Surface &s, const XYZR &d)
Get depth of sphere below surface.
Definition: Surface.h:143
void set_enclosing_radius(XYZR b, const XYZs &v)
Set the radius of the first to enclose the list.
Class to handle individual particles of a Model object.
Definition: Particle.h:41
GenericAttributeSingletonScore< UF > * create_generic_attribute_singleton_score(UF *uf, FloatKey k)
void transform(RigidBody a, const algebra::Transformation3D &tr)
Transform a rigid body.
Definition: rigid_bodies.h:830
void assign_blame(const RestraintsTemp &rs, const ParticlesTemp &ps, FloatKey attribute)
TruncatedHarmonic< BOTH > TruncatedHarmonicBound
A specialization.
TruncatedHarmonic< UPPER > TruncatedHarmonicUpperBound
A specialization for the upper bound.
BallMover
Definition: BallMover.py:1
Output IMP model data in various file formats.
std::string get_chain_id(Hierarchy h)
Walk up the hierarchy to determine the chain id.
def get_all_provenance
Yield all provenance decorators of the given types for the particle.
Abstract class for scoring object(s) of type ParticleIndexTriplet.
Definition: TripletScore.h:37
void add_provenance(Model *m, ParticleIndex pi, Provenance p)
Add provenance to part of the model.
Tag part of the system to track how it was created.
Definition: provenance.h:586
double get_distance(const Surface &s, const XYZR &d)
Get distance from sphere to surface.
Definition: Surface.h:153
ParticleIndexes get_indexes(const ParticlesTemp &ps)
Abstract single variable functor class for score functions.
Definition: UnaryFunction.h:25
void set_enclosing_sphere(XYZR b, const XYZs &v, double slack=0)
Set the coordinates and radius of the first to enclose the list.
TruncatedHarmonic< LOWER > TruncatedHarmonicLowerBound
A specialization for the lower bound.
void set_check_level(CheckLevel tf)
Control runtime checks in the code.
Definition: exception.h:73
std::string get_module_version()
A restraint is a term in an IMP ScoringFunction.
Definition: Restraint.h:54