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IMP Reference Guide
2.11.1
The Integrative Modeling Platform
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#include <IMP/kinematics/ProteinKinematics.h>
Inheritance diagram for IMP::kinematics::ProteinKinematics:Kinematic structure over a protein, with backbone and side chain dihedrals
Note: Particles that are handled by this class should never be decorated with IMP::core::RigidBody externally, as this could lead to unexpected behavior (e.g., wrong coordinates) and it cannot be detected by IMP at the current time.
Definition at line 35 of file ProteinKinematics.h.
Public Member Functions | |
| ProteinKinematics (atom::Hierarchy mhd, bool flexible_backbone=true, bool flexible_side_chains=false) | |
| Constructor with all phi/psi rotatable. More... | |
| ProteinKinematics (atom::Hierarchy mhd, const atom::Residues &flexible_residues, const std::vector< atom::Atoms > &dihedral_angles, atom::Atoms open_loop_bond_atoms=atom::Atoms(), bool flexible_backbone=true, bool flexible_side_chains=false) | |
| DihedralAngleRevoluteJoints | get_joints () |
| KinematicForest * | get_kinematic_forest () |
| DihedralAngleRevoluteJoints | get_loop_joints () |
| DihedralAngleRevoluteJoints | get_ordered_joints () |
| double | get_phi (const atom::Residue r) const |
| double | get_psi (const atom::Residue r) const |
| core::RigidBodies | get_rigid_bodies () |
| virtual std::string | get_type_name () const |
| virtual ::IMP::VersionInfo | get_version_info () const |
| Get information about the module and version of the object. More... | |
| void | set_phi (const atom::Residue r, double angle) |
| void | set_psi (const atom::Residue r, double angle) |
| Public Member Functions inherited from IMP::Object | |
| virtual void | clear_caches () |
| CheckLevel | get_check_level () const |
| LogLevel | get_log_level () const |
| void | set_check_level (CheckLevel l) |
| void | set_log_level (LogLevel l) |
| Set the logging level used in this object. More... | |
| void | set_was_used (bool tf) const |
| void | show (std::ostream &out=std::cout) const |
| const std::string & | get_name () const |
| void | set_name (std::string name) |
Additional Inherited Members | |
| Protected Member Functions inherited from IMP::Object | |
| Object (std::string name) | |
| Construct an object with the given name. More... | |
| virtual void | do_destroy () |
| IMP::kinematics::ProteinKinematics::ProteinKinematics | ( | atom::Hierarchy | mhd, |
| bool | flexible_backbone = true, |
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| bool | flexible_side_chains = false |
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Constructor with all phi/psi rotatable.
| core::RigidBodies IMP::kinematics::ProteinKinematics::get_rigid_bodies | ( | ) |
get all rigid bodies that were automatically generated in the tree
Definition at line 88 of file ProteinKinematics.h.
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virtual |
Get information about the module and version of the object.
Reimplemented from IMP::Object.
Definition at line 106 of file ProteinKinematics.h.