home
about
news
download
doc
source
systems
tests
bugs
contact
IMP Reference Guide
2.11.1
The Integrative Modeling Platform
IMP Manual
Reference Guide
Tutorial Index
Modules
Classes
Examples
include
IMP
atom
version 2.11.1
RemoveRigidMotionOptimizerState.h
Go to the documentation of this file.
1
/**
2
* \file IMP/atom/RemoveRigidMotionOptimizerState.h
3
* \brief Remove rigid rotation and translation during molecular dynamics.
4
*
5
* Copyright 2007-2019 IMP Inventors. All rights reserved.
6
*
7
*/
8
9
#ifndef IMPATOM_REMOVE_RIGID_MOTION_OPTIMIZER_STATE_H
10
#define IMPATOM_REMOVE_RIGID_MOTION_OPTIMIZER_STATE_H
11
12
#include <IMP/atom/atom_config.h>
13
#include <
IMP/Particle.h
>
14
#include <
IMP/base_types.h
>
15
#include <
IMP/OptimizerState.h
>
16
17
IMPATOM_BEGIN_NAMESPACE
18
19
//! Removes rigid translation and rotation from the particles.
20
class
IMPATOMEXPORT
RemoveRigidMotionOptimizerState
:
public
OptimizerState
{
21
public
:
22
RemoveRigidMotionOptimizerState
(
Model
*m,
23
ParticleIndexesAdaptor
pis);
24
25
//! Set the particles to use.
26
void
set_particles
(
const
Particles
&pis) { pis_ = pis; }
27
28
//! Remove rigid motion now
29
void
remove_rigid_motion()
const
;
30
31
IMP_OBJECT_METHODS
(
RemoveRigidMotionOptimizerState
);
32
33
protected
:
34
virtual
void
do_update
(
unsigned
int
call)
IMP_OVERRIDE
;
35
36
private
:
37
void
remove_linear()
const
;
38
void
remove_angular()
const
;
39
Particles
pis_;
40
};
41
42
IMP_OBJECTS
(
RemoveRigidMotionOptimizerState
,
RemoveRigidMotionOptimizerStates
);
43
44
IMPATOM_END_NAMESPACE
45
46
#endif
/* IMPATOM_REMOVE_RIGID_MOTION_OPTIMIZER_STATE_H */
base_types.h
Basic types used by IMP.
IMP_OBJECT_METHODS
#define IMP_OBJECT_METHODS(Name)
Define the basic things needed by any Object.
Definition:
object_macros.h:25
IMP::OptimizerState::do_update
virtual void do_update(unsigned int)
Definition:
OptimizerState.h:120
IMP::Vector< Pointer< Particle > >
IMP::ParticleIndexesAdaptor
Definition:
particle_index.h:50
IMP::Model
Class for storing model, its restraints, constraints, and particles.
Definition:
Model.h:72
IMP::atom::RemoveRigidMotionOptimizerState
Removes rigid translation and rotation from the particles.
Definition:
RemoveRigidMotionOptimizerState.h:20
IMP::atom::RemoveRigidMotionOptimizerState::set_particles
void set_particles(const Particles &pis)
Set the particles to use.
Definition:
RemoveRigidMotionOptimizerState.h:26
Particle.h
Classes to handle individual model particles. (Note that implementation of inline functions is in int...
IMP_OBJECTS
#define IMP_OBJECTS(Name, PluralName)
Define the types for storing lists of object pointers.
Definition:
object_macros.h:44
IMP::OptimizerState
Shared optimizer state that is invoked upon commitment of new coordinates.
Definition:
OptimizerState.h:43
OptimizerState.h
Shared optimizer state.
IMP_OVERRIDE
#define IMP_OVERRIDE
Cause a compile error if this method does not override a parent method.
Definition:
compiler_macros.h:78