helpers.h File Reference

#include "kinematics_config.h"
#include <IMP/atom/Atom.h>
#include <IMP/atom/Residue.h>
#include <boost/algorithm/string.hpp>

Include dependency graph for helpers.h:

This graph shows which files directly or indirectly include this file:

Go to the source code of this file.

Namespaces
	IMP
	Base functionality and abstract base classes for representation, scoring and sampling.
	IMP::kinematics
	Functionality for dealing with kinematic mechanical structures.

Functions
void	IMP::kinematics::add_missing_bonds (IMP::ParticlesTemp &atoms, IMP::ParticlesTemp &bonds)
IMP::atom::Bond	IMP::kinematics::create_bond (IMP::atom::Atoms &as)
IMP::atom::Atom	IMP::kinematics::find_atom (const IMP::ParticlesTemp &atoms, int input_index)
IMP::atom::Residue	IMP::kinematics::find_residue (const IMP::ParticlesTemp &residues, int res_index, std::string chain)
IMP::atom::Atom	IMP::kinematics::get_ca_atom (const IMP::ParticlesTemp &atoms, int residue_index, std::string chain_id)
void	IMP::kinematics::read_angle_file (const std::string &file_name, const IMP::ParticlesTemp &residues, const IMP::ParticlesTemp &atoms, IMP::atom::Residues &flexible_residues, std::vector< IMP::atom::Atoms > &dihedral_angles)
void	IMP::kinematics::read_connect_chains_file (const std::string &file_name, const IMP::ParticlesTemp &atoms, std::vector< IMP::atom::Atoms > &connect_atoms)

Detailed Description

Authors

Dina Schneidman Copyright 2007-2019 IMP Inventors. All rights reserved.

Definition in file helpers.h.