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IMP Reference Guide  2.11.0
The Integrative Modeling Platform
IMP::multifit::ProteomicsData Member List

This is the complete list of members for IMP::multifit::ProteomicsData, including all inherited members.

add_cross_link_interaction(Int prot1, Int res1, Int prot2, Int res2, bool used_in_filter, Float linker_len) (defined in IMP::multifit::ProteomicsData)IMP::multifit::ProteomicsData
add_ev_pair(Int prot1, Int prot2) (defined in IMP::multifit::ProteomicsData)IMP::multifit::ProteomicsData
add_interaction(const Ints &ii, bool used_for_filter, float linker_len) (defined in IMP::multifit::ProteomicsData)IMP::multifit::ProteomicsData
add_protein(std::string name, int start_res, int end_res, const std::string &mol_fn, const std::string &surface_fn, const std::string &ref_fn)IMP::multifit::ProteomicsData
add_protein(const ProteinRecordData &rec)IMP::multifit::ProteomicsData
clear_caches()IMP::Objectvirtual
do_destroy()IMP::Objectprotectedvirtual
ev_ (defined in IMP::multifit::ProteomicsData)IMP::multifit::ProteomicsDataprotected
find(const std::string &name) const (defined in IMP::multifit::ProteomicsData)IMP::multifit::ProteomicsData
get_check_level() const (defined in IMP::Object)IMP::Object
get_cross_link(int xlink_ind) const (defined in IMP::multifit::ProteomicsData)IMP::multifit::ProteomicsData
get_cross_link_length(int xlink_ind) const (defined in IMP::multifit::ProteomicsData)IMP::multifit::ProteomicsData
get_cross_link_part_of_filter(int xlink_ind) const (defined in IMP::multifit::ProteomicsData)IMP::multifit::ProteomicsData
get_end_res(int protein_ind) const (defined in IMP::multifit::ProteomicsData)IMP::multifit::ProteomicsData
get_ev_pair(int ev_ind) const (defined in IMP::multifit::ProteomicsData)IMP::multifit::ProteomicsData
get_interaction(int interaction_ind) const (defined in IMP::multifit::ProteomicsData)IMP::multifit::ProteomicsData
get_interaction_linker_length(int interaction_ind) const (defined in IMP::multifit::ProteomicsData)IMP::multifit::ProteomicsData
get_interaction_part_of_filter(int interaction_ind) const (defined in IMP::multifit::ProteomicsData)IMP::multifit::ProteomicsData
get_log_level() const (defined in IMP::Object)IMP::Object
get_name() const (defined in IMP::Object)IMP::Object
get_num_allowed_violated_cross_links() const (defined in IMP::multifit::ProteomicsData)IMP::multifit::ProteomicsData
get_num_allowed_violated_ev() const (defined in IMP::multifit::ProteomicsData)IMP::multifit::ProteomicsData
get_num_allowed_violated_interactions() const (defined in IMP::multifit::ProteomicsData)IMP::multifit::ProteomicsData
get_number_of_cross_links() const (defined in IMP::multifit::ProteomicsData)IMP::multifit::ProteomicsData
get_number_of_ev_pairs() const (defined in IMP::multifit::ProteomicsData)IMP::multifit::ProteomicsData
get_number_of_interactions() const (defined in IMP::multifit::ProteomicsData)IMP::multifit::ProteomicsData
get_number_of_proteins() const (defined in IMP::multifit::ProteomicsData)IMP::multifit::ProteomicsData
get_protein_data(int protein_ind) const (defined in IMP::multifit::ProteomicsData)IMP::multifit::ProteomicsData
get_protein_filename(int protein_ind) const (defined in IMP::multifit::ProteomicsData)IMP::multifit::ProteomicsData
get_protein_name(int protein_ind) const (defined in IMP::multifit::ProteomicsData)IMP::multifit::ProteomicsData
get_reference_filename(int protein_ind) const (defined in IMP::multifit::ProteomicsData)IMP::multifit::ProteomicsData
get_start_res(int protein_ind) const (defined in IMP::multifit::ProteomicsData)IMP::multifit::ProteomicsData
get_surface_filename(int protein_ind) const (defined in IMP::multifit::ProteomicsData)IMP::multifit::ProteomicsData
get_type_name() const (defined in IMP::multifit::ProteomicsData)IMP::multifit::ProteomicsDatavirtual
get_version_info() const IMP::multifit::ProteomicsDatavirtual
interaction_in_filter_ (defined in IMP::multifit::ProteomicsData)IMP::multifit::ProteomicsDataprotected
interaction_linker_len_ (defined in IMP::multifit::ProteomicsData)IMP::multifit::ProteomicsDataprotected
interactions_ (defined in IMP::multifit::ProteomicsData)IMP::multifit::ProteomicsDataprotected
NonCopyable() (defined in IMP::NonCopyable)IMP::NonCopyableprotected
num_allowed_violated_ev_ (defined in IMP::multifit::ProteomicsData)IMP::multifit::ProteomicsDataprotected
num_allowed_violated_interactions_ (defined in IMP::multifit::ProteomicsData)IMP::multifit::ProteomicsDataprotected
num_allowed_violated_xlinks_ (defined in IMP::multifit::ProteomicsData)IMP::multifit::ProteomicsDataprotected
Object(std::string name)IMP::Objectprotected
prot_data_ (defined in IMP::multifit::ProteomicsData)IMP::multifit::ProteomicsDataprotected
prot_map_ (defined in IMP::multifit::ProteomicsData)IMP::multifit::ProteomicsDataprotected
ProteomicsData() (defined in IMP::multifit::ProteomicsData)IMP::multifit::ProteomicsData
set_check_level(CheckLevel l)IMP::Object
set_log_level(LogLevel l)IMP::Object
set_name(std::string name) (defined in IMP::Object)IMP::Object
set_num_allowed_violated_cross_links(int n) (defined in IMP::multifit::ProteomicsData)IMP::multifit::ProteomicsData
set_num_allowed_violated_ev(int n) (defined in IMP::multifit::ProteomicsData)IMP::multifit::ProteomicsData
set_num_allowed_violated_interactions(int n) (defined in IMP::multifit::ProteomicsData)IMP::multifit::ProteomicsData
set_was_used(bool tf) const IMP::Object
show(std::ostream &out=std::cout) const (defined in IMP::Object)IMP::Object
xlink_in_filter_ (defined in IMP::multifit::ProteomicsData)IMP::multifit::ProteomicsDataprotected
xlink_len_ (defined in IMP::multifit::ProteomicsData)IMP::multifit::ProteomicsDataprotected
xlinks_ (defined in IMP::multifit::ProteomicsData)IMP::multifit::ProteomicsDataprotected
~Object() (defined in IMP::Object)IMP::Objectvirtual
~ProteomicsData() (defined in IMP::multifit::ProteomicsData)IMP::multifit::ProteomicsDataprotectedvirtual