- g -

gather() : IMP::core
gather_best_solution_results() : IMP::EMageFit::solutions_io
gather_by_attribute() : IMP::core
gather_by_attributes() : IMP::core
gather_slice() : IMP::core
gather_solution_results() : IMP::EMageFit::solutions_io
get_absolute_path() : IMP
get_alignments_from_first_to_second() : IMP::algebra
get_all_atom_CHARMM_parameters() : IMP::atom
get_all_chains() : IMP::EMageFit::imp_general::representation
get_all_descendants() : IMP::core
get_all_leaves() : IMP::pmi1::tools
get_all_members() : IMP::EMageFit::imp_general::representation
get_all_provenance() : IMP::core
get_anchor_indices_matching_secondary_structure() : IMP::multifit
get_anchors_for_density() : IMP::multifit
get_angle() : IMP::algebra , IMP::core
get_are_almost_equal() : IMP::algebra
get_are_colinear() : IMP::algebra
get_area() : IMP::algebra
get_assembly_placement_score() : IMP::EMageFit::imp_general::comparisons
get_atom() : IMP::atom
get_atom_type_exists() : IMP::atom
get_autocorrelation2d() : IMP::em2d
get_autocorrelation2d_no_preprocessing() : IMP::em2d
get_axis_and_angle() : IMP::algebra
get_backbone() : IMP::EMageFit::imp_general::representation
get_balanced_merge_tree() : IMP::domino
get_ball_radius_from_volume_3d() : IMP::algebra
get_basis_vector_d() : IMP::algebra
get_basis_vector_kd() : IMP::algebra
get_bead_sizes() : IMP::pmi::io , IMP::pmi1::io
get_best_models() : IMP::pmi::io , IMP::pmi1::io
get_best_solution() : IMP::EMageFit::solutions_io
get_best_template_matches() : IMP::em2d
get_bond() : IMP::atom
get_bool_flag() : IMP
get_bounding_box() : IMP::algebra , IMP::core , IMP::em
get_ccc() : IMP::EMageFit::imp_general::comparisons
get_centroid() : IMP::algebra , IMP::core
get_centroids() : IMP::statistics
get_chain() : IMP::atom
get_chain_id() : IMP::atom
get_charmm_untyped_atoms() : IMP::atom
get_check_level() : IMP
get_close_pairs_range() : IMP::npctransport
get_close_to_point() : IMP::multifit
get_closer_power_of_2() : IMP::algebra
get_closest_residue_position() : IMP::pmi::tools , IMP::pmi1::tools
get_cn_rmsd() : IMP::cnmultifit
get_coarse_selection() : IMP::EMageFit::imp_general::representation
get_complete_alignment() : IMP::em2d
get_complete_alignment_no_preprocessing() : IMP::em2d
get_complete_alignment_with_centers_no_preprocessing() : IMP::em2d
get_component() : IMP::EMageFit::imp_general::representation
get_component_placement_score() : IMP::atom
get_components_placement_scores() : IMP::EMageFit::imp_general::comparisons
get_connected_components() : IMP::multifit
get_connectivity_restraint() : IMP::EMageFit::restraints
get_connolly_surface() : IMP::algebra
get_constrained() : IMP::algebra
get_constrained_surface_geometry() : IMP::core
get_coordinates() : IMP::EMageFit::domino_model
get_copy_index() : IMP::atom
get_correlation2d() : IMP::em2d
get_correlation2d_no_preprocessing() : IMP::em2d
get_covariance() : IMP::algebra
get_cross_correlation_coefficient() : IMP::em2d
get_cube_d() : IMP::algebra
get_cube_kd() : IMP::algebra
get_data_path() : IMP::algebra , IMP::atom , IMP::benchmark , IMP::cgal , IMP::cnmultifit , IMP::container , IMP::core , IMP::display , IMP::domino , IMP::em2d , IMP::em , IMP::EMageFit , IMP::example , IMP::foxs , IMP , IMP::gsl , IMP::integrative_docking , IMP::isd , IMP::kinematics , IMP::kmeans , IMP::misc , IMP::mmcif , IMP::modeller , IMP::mpi , IMP::multi_state , IMP::multifit , IMP::npc , IMP::npctransport , IMP::parallel , IMP::pepdock , IMP::pmi1 , IMP::pmi , IMP::rmf , IMP::rotamer , IMP::saxs , IMP::saxs_merge , IMP::score_functor , IMP::scratch , IMP::spb , IMP::statistics , IMP::symmetry , IMP::test
get_default_form_factor_table() : IMP::saxs
get_densities() : IMP::pmi1::tools
get_dependency_graph() : IMP
get_dependent_particles() : IMP
get_deprecation_exceptions() : IMP
get_depth() : IMP::core
get_diffusion_angle() : IMP::atom
get_diffusion_coefficient() : IMP::atom
get_diffusion_filtering_partial_derivative() : IMP::em2d
get_diffusion_length() : IMP::atom
get_dihedral() : IMP::core
get_display_color() : IMP::display
get_distance() : IMP::algebra , IMP::core , IMP::misc
get_distance_if_smaller_than() : IMP::domino
get_domes() : IMP::em2d
get_drms() : IMP::atom
get_drms_for_backbone() : IMP::EMageFit::imp_general::comparisons
get_drmsd() : IMP::atom
get_drmsd_Q() : IMP::atom
get_dump_interval_in_frames() : IMP::npctransport
get_edges() : IMP::algebra
get_einstein_diffusion_coefficient() : IMP::atom
get_einstein_rotational_diffusion_coefficient() : IMP::atom
get_elementwise_product() : IMP::algebra
get_em2d_restraint() : IMP::EMageFit::restraints
get_embedding() : IMP::domino
get_enclosing_image_size() : IMP::em2d
get_enclosing_sphere() : IMP::algebra , IMP::core
get_evenly_distributed_registration_results() : IMP::em2d
get_example_path() : IMP::algebra , IMP::atom , IMP::benchmark , IMP::cgal , IMP::cnmultifit , IMP::container , IMP::core , IMP::display , IMP::domino , IMP::em2d , IMP::em , IMP::EMageFit , IMP::example , IMP::foxs , IMP , IMP::gsl , IMP::integrative_docking , IMP::isd , IMP::kinematics , IMP::kmeans , IMP::misc , IMP::mmcif , IMP::modeller , IMP::mpi , IMP::multi_state , IMP::multifit , IMP::npc , IMP::npctransport , IMP::parallel , IMP::pepdock , IMP::pmi1 , IMP::pmi , IMP::rmf , IMP::rotamer , IMP::saxs , IMP::saxs_merge , IMP::score_functor , IMP::scratch , IMP::spb , IMP::statistics , IMP::symmetry , IMP::test
get_executable_name() : IMP
get_experiment_params() : IMP::EMageFit::utility
get_fft_using_optimal_size() : IMP::em2d
get_fg_chain() : IMP::npctransport
get_fields_string() : IMP::EMageFit::solutions_io
get_fixed_xyz_from_rotation() : IMP::algebra
get_float_flag() : IMP
get_force_in_femto_newtons() : IMP::atom
get_frames_from_ns() : IMP::npctransport
get_gaussian_from_covariance() : IMP::algebra
get_global_from_local_v3() : IMP::npctransport
get_global_score() : IMP::em2d
get_gnuplot_color() : IMP::display
get_gradient_of_composed_with_respect_to_first() : IMP::algebra
get_gradient_of_composed_with_respect_to_second() : IMP::algebra
get_gray_color() : IMP::display
get_grid() : IMP::em
get_grid_interior_cover_by_spacing() : IMP::algebra
get_grid_surface_cover() : IMP::algebra
get_heavy_atom_CHARMM_parameters() : IMP::atom
get_height() : IMP::core
get_hierarchy_tree() : IMP::atom
get_histogram() : IMP::em2d
get_hot_color() : IMP::display
get_identity_rotation_2d() : IMP::algebra
get_identity_rotation_3d() : IMP::algebra
get_identity_transformation_2d() : IMP::algebra
get_identity_transformation_3d() : IMP::algebra
get_index() : IMP::domino
get_indexes() : IMP
get_initial_reference_frame() : IMP::core
get_input_containers() : IMP
get_input_particles() : IMP
get_int_flag() : IMP
get_interaction_graph() : IMP::domino
get_interaction_graph_geometry() : IMP::domino
get_interiors_intersect() : IMP::algebra
get_internal() : IMP::core
get_interpolated() : IMP::algebra
get_interpolated_rgb() : IMP::display
get_intersection() : IMP::algebra
get_is_big_endian() : IMP::algebra
get_is_canonical() : IMP::pmi
get_is_little_endian() : IMP::algebra
get_is_quick_test() : IMP
get_jet_color() : IMP::display
get_junction_tree() : IMP::domino
get_kd() : IMP::atom
get_kt() : IMP::atom
get_largest_triangle() : IMP::algebra
get_leaves() : IMP::atom , IMP::core
get_linear_color_map_value() : IMP::display
get_linearly_interpolated() : IMP::algebra
get_live_object_names() : IMP
get_live_objects() : IMP
get_log_level() : IMP
get_magnitude_and_normalize_in_place() : IMP::algebra
get_mass() : IMP::atom
get_mass_from_number_of_residues() : IMP::atom
get_mass_from_volume() : IMP::atom
get_max_map() : IMP::em
get_maximal_number_of_unordered_pairs() : IMP::npctransport
get_maximum_length() : IMP::algebra
get_maximum_time_step_estimate() : IMP::atom
get_mean() : IMP::em2d
get_merge_tree() : IMP::domino
get_molarity() : IMP::atom
get_molecular_mass_at_threshold() : IMP::em
get_molecule() : IMP::mmcif::data
get_molecule_name() : IMP::atom
get_molecule_name_and_copy() : IMP::pmi
get_molecules() : IMP::pmi1::tools
get_morphologic_gradient() : IMP::em2d
get_n_lost_and_gained() : IMP::npctransport
get_native_overlap() : IMP::atom
get_nearest_assignment() : IMP::domino
get_networkx_graph() : IMP
get_next_larger_power_of_2() : IMP::algebra
get_next_residue() : IMP::atom
get_non_optimizable_particles() : IMP::npctransport
get_nucleic_acid_backbone() : IMP::EMageFit::imp_general::representation
get_number_of_frames() : IMP::npctransport
get_number_of_incidences() : IMP::example
get_number_of_particles_outside_of_the_density() : IMP::em
get_number_of_threads() : IMP
get_numbers_of_particles_outside_of_the_density() : IMP::em
get_one_letter_code() : IMP::atom
get_ones_vector_d() : IMP::algebra
get_ones_vector_kd() : IMP::algebra
get_optimizable_particles() : IMP::npctransport
get_order() : IMP::domino
get_orientations_nearby() : IMP::EMageFit::sampling
get_orthogonal_vector() : IMP::algebra
get_output_containers() : IMP
get_output_particles() : IMP
get_output_statistics_interval_in_frames() : IMP::npctransport
get_overlap_percentage() : IMP::em2d
get_pairwise_rmsd_score() : IMP::atom
get_part_of_sampling_space() : IMP::multifit
get_partial_assembly_setting_data() : IMP::multifit
get_partial_index() : IMP::domino
get_particle_indexes() : IMP::npctransport
get_particles() : IMP
get_particles_at_resolution_one() : IMP::pmi::analysis , IMP::pmi1::analysis
get_particles_at_resolution_ten() : IMP::pmi::analysis , IMP::pmi1::analysis
get_particles_from_points() : IMP::EMageFit::imp_general::io
get_particles_within_zone() : IMP::pmi1::tools
get_percentage_of_voxels_covered_by_particles() : IMP::em
get_phi_dihedral_atoms() : IMP::atom
get_placement_score() : IMP::atom
get_placement_score_from_coordinates() : IMP::EMageFit::imp_general::comparisons
get_placement_scores_from_coordinates() : IMP::EMageFit::imp_general::comparisons
get_points_close_to_molecule() : IMP::multifit
get_possible_interactions() : IMP::domino
get_power_distance() : IMP::algebra
get_previous_residue() : IMP::atom
get_principal_components() : IMP::algebra
get_projected() : IMP::algebra
get_projection() : IMP::em2d
get_projections() : IMP::em2d
get_prot_name_from_particle() : IMP::pmi::tools , IMP::pmi1::tools
get_protein_density_from_reference() : IMP::atom
get_protobuf_configuration_from_text() : IMP::npctransport
get_pruned_dependency_graph() : IMP
get_psi_dihedral_atoms() : IMP::atom
get_quantile() : IMP::statistics
get_radius_of_gyration() : IMP::algebra , IMP::atom
get_random_chain() : IMP::algebra
get_random_cross_link_dataset() : IMP::pmi::tools , IMP::pmi1::tools
get_random_double_uniform() : IMP
get_random_float_uniform() : IMP
get_random_local_transformation() : IMP::algebra
get_random_numbers_normal() : IMP
get_random_numbers_uniform() : IMP
get_random_registration_results() : IMP::em2d
get_random_rotation_2d() : IMP::algebra
get_random_rotation_3d() : IMP::algebra
get_random_seed() : IMP
get_random_transformation() : IMP::EMageFit::imp_general::movement
get_random_vector_in() : IMP::algebra
get_random_vector_on() : IMP::algebra
get_random_vector_on_unit_sphere() : IMP::algebra
get_rasterized() : IMP::algebra
get_rasterized_fast() : IMP::algebra
get_rb_name() : IMP::EMageFit::imp_general::representation
get_rbs_and_beads() : IMP::pmi1::tools
get_reference_frames_aligning_rbs() : IMP::EMageFit::imp_general::alignments
get_reference_frames_from_chain_alignment() : IMP::EMageFit::imp_general::alignments
get_reflected() : IMP::algebra
get_relative_path() : IMP
get_relative_projection_on_segment() : IMP::algebra
get_representation() : IMP::atom
get_representatives() : IMP::statistics
get_required_score_states() : IMP
get_residue() : IMP::atom
get_residue_coordinates() : IMP::EMageFit::imp_general::representation
get_residue_gaps_in_hierarchy() : IMP::pmi::tools , IMP::pmi1::tools
get_residue_indexes() : IMP::pmi::tools , IMP::pmi1::tools
get_residue_particle() : IMP::EMageFit::imp_general::representation
get_residue_type() : IMP::atom
get_residues_distance() : IMP::EMageFit::imp_general::representation
get_resolution() : IMP::atom
get_restraint_graph() : IMP::domino
get_restraint_set() : IMP::pmi::tools , IMP::pmi1::tools
get_restraints() : IMP::domino
get_rgb_color() : IMP::display
get_rigid_bodies_drms() : IMP::atom
get_rigid_body() : IMP::EMageFit::imp_general::representation
get_rmsd() : IMP::algebra , IMP::atom
get_rmsd_transforming_first() : IMP::algebra , IMP::atom
get_root() : IMP::core
get_root_rigid_body() : IMP::core
get_rotation_about_axis() : IMP::algebra
get_rotation_about_normalized_axis() : IMP::algebra
get_rotation_about_point() : IMP::algebra
get_rotation_error() : IMP::em2d
get_rotation_from_fixed_xyz() : IMP::algebra
get_rotation_from_fixed_zxz() : IMP::algebra
get_rotation_from_fixed_zyz() : IMP::algebra
get_rotation_from_matrix() : IMP::algebra
get_rotation_from_vector4d() : IMP::algebra
get_rotation_from_x_y_axes() : IMP::algebra
get_rotation_taking_first_to_second() : IMP::algebra
get_rotation_to_x_axis() : IMP::algebra
get_rotational_alignment() : IMP::em2d
get_rotational_alignment_no_preprocessing() : IMP::em2d
get_rotational_diffusion_coefficient() : IMP::atom
get_rounded() : IMP::algebra
get_secondary_structure_match_score() : IMP::atom
get_segment() : IMP::em
get_segment_by_masking() : IMP::em
get_segment_connecting_first_to_second() : IMP::algebra
get_segmentation() : IMP::multifit
get_selection_as_atom_hierarchy() : IMP::EMageFit::imp_general::representation
get_selection_rigid_body() : IMP::EMageFit::imp_general::representation
get_shift_error() : IMP::em2d
get_shortest_segment() : IMP::algebra
get_sign() : IMP::algebra
get_simplified_from_volume() : IMP::algebra
get_slack_estimate() : IMP::container
get_slice() : IMP::domino
get_sorted_segments() : IMP::pmi1::tools
get_sorting_indices() : IMP::EMageFit::database , IMP::EMageFit::solutions_io
get_spectrum() : IMP::em2d
get_sphere_d_geometry() : IMP::misc
get_spheres_from_vectors() : IMP::npctransport
get_spring_constant_in_femto_newtons_per_angstrom() : IMP::atom
get_squared_distance() : IMP::algebra
get_state_clusters() : IMP::domino
get_state_index() : IMP::atom
get_statistics_interval_in_frames() : IMP::npctransport
get_string_flag() : IMP
get_subset_graph_geometry() : IMP::domino
get_subsets() : IMP::domino
get_sum() : IMP::em
get_surface_area() : IMP::algebra , IMP::atom
get_surface_area_and_volume() : IMP::algebra
get_terminal_residue() : IMP::pmi::tools , IMP::pmi1::tools
get_terminal_residue_position() : IMP::pmi::tools , IMP::pmi1::tools
get_threshold_for_approximate_mass() : IMP::em
get_threshold_for_approximate_volume() : IMP::em
get_threshold_map() : IMP::em
get_time_step() : IMP::npctransport
get_trajectory_models() : IMP::pmi::io , IMP::pmi1::io
get_transformation_3d() : IMP::algebra
get_transformation_aligning_first_to_second() : IMP::algebra , IMP::atom , IMP::core
get_transformation_aligning_pair() : IMP::algebra
get_transformation_from_first_triangle_to_second() : IMP::algebra
get_transformed() : IMP::algebra , IMP::em2d
get_translational_alignment() : IMP::em2d
get_translational_alignment_no_preprocessing() : IMP::em2d
get_trilinearly_interpolated() : IMP::algebra
get_uniform_cover_rotations_3d() : IMP::algebra
get_uniform_surface_cover() : IMP::algebra
get_uniform_upper_hemisphere_cover() : IMP::algebra
get_uniformly_sampled_rotations() : IMP::algebra
get_union() : IMP::algebra
get_unique_index() : IMP::em2d
get_unique_name() : IMP
get_unit_bounding_box_d() : IMP::algebra
get_unit_bounding_box_kd() : IMP::algebra
get_unit_vector() : IMP::algebra
get_update_order() : IMP
get_vector_geometry() : IMP::algebra , IMP::core , IMP
get_vector_product() : IMP::algebra
get_vertices() : IMP::algebra
get_volume() : IMP::algebra , IMP::atom
get_volume_at_threshold() : IMP::em
get_volume_from_mass() : IMP::atom
get_volume_from_residue_type() : IMP::atom
get_weighted_rmsd() : IMP::algebra
get_zero_vector_d() : IMP::algebra
get_zero_vector_kd() : IMP::algebra