A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | Q | R | S | T | U | V | W | X | Y | Z

A

Pointer (IMP)

SingletonModifier (IMP)

AddFloatFlag (IMP)

Demuxer (IMP.isd.demux_trajs)

InContainerSingletonFilter (IMP::container)

PointerMember (IMP)

SingletonPredicate (IMP)

AddIntFlag (IMP)

DenseFloatLogGridKD (IMP::algebra)

InContainerTripletFilter (IMP::container)

PointGeometry (IMP::display)

SingletonRestraint (IMP::core)

AddScores (IMP::score_functor)

DenseGrid3D (IMP::algebra)

IncrementalScoringFunction (IMP::core)

PointToSphereDistance (IMP::score_functor)

SingletonsConstraint (IMP::container)

AddStringFlag (IMP)

DenseGridStorageD (IMP::algebra)

Index (IMP)

PolarResamplingParameters (IMP::em2d)

SingletonScore (IMP)

AdvancedFlag (IMP)

DenseIntLogGrid3D (IMP::algebra)

IndexException (IMP)

PolygonGeometry (IMP::display)

SingletonsGeometry (IMP::display)

Alignment (IMP.pmi.analysis)

DensityDataPoints (IMP::multifit)

IndexStates (IMP::domino)

PoreRadiusSingletonScore (IMP::npctransport)

SingletonsOptimizerState (IMP::container)

Alignment (IMP.pmi1.analysis)

DensityFillingRestraint (IMP::em)

IndexVector (IMP)

PoreSideVolumeLocationRestraint (IMP::npc)

SingletonsRestraint (IMP::container)

AlignmentClustering (IMP.multifit.cluster)

DensityHeader (IMP::em)

InitialDockingFromXlinks (IMP.EMageFit.buildxlinks)

PPDBSelector (IMP::atom)

SingletonStatistical (IMP::score_functor)

AlignSymmetric (IMP::cnmultifit)

DensityMap (IMP::em)

InputAdaptor (IMP)

Precision (IMP.pmi.analysis)

SitesGeometry (IMP::npctransport)

AllBipartitePairContainer (IMP::container)

DependencyScoreState (IMP::domino)

InternalCoordinatesConstraint (IMP::pmi)

Precision (IMP.pmi1.analysis)

SitesPairScore (IMP::npctransport)

AllMol2Selector (IMP::atom)

DerivativeAccumulator (IMP)

InternalCoordinatesConstraint (IMP::pmi1)

PredicatePairsRestraint (IMP::container)

SitesPairScoreParameters (IMP::npctransport)

AllPairContainer (IMP::container)

DerivativeCalculator (IMP::saxs)

InternalException (IMP)

PredicateQuadsRestraint (IMP::container)

SkinSurfaceGeometry (IMP::display)

AllPDBSelector (IMP::atom)

DerivativesFromRefined (IMP::core)

IntsOrder (IMP::em2d)

PredicateSingletonScore (IMP::core)

SlabWithCylindricalPore (IMP::npctransport)

AllSamePairPredicate (IMP::core)

DerivativesToRefined (IMP::core)

IOException (IMP)

PredicateSingletonsRestraint (IMP::container)

SlabWithCylindricalPorePairScore (IMP::npctransport)

AllSameQuadPredicate (IMP::core)

DiameterRestraint (IMP::core)

IsCollisionPairPredicate (IMP::core)

PredicateTripletsRestraint (IMP::container)

SlabWithCylindricalPoreWireGeometry (IMP::npctransport)

AllSameSingletonPredicate (IMP::core)

DiameterRgyrRestraint (IMP::spb)

ISDRestraint (IMP::spb)

PrincipalComponentAnalysisD (IMP::algebra)

SlabWithPore (IMP::npctransport)

AllSameTripletPredicate (IMP::core)

Diffusion (IMP::atom)

ISDRestraint (IMP::isd)

PrismaticJoint (IMP::kinematics)

SlabWithToroidalPore (IMP::npctransport)

AmbiguousCompositeRestraint (IMP.pmi.restraints.proteomics)

Dihedral (IMP::atom)

IsosurfaceGeometry (IMP::display)

ProbabilisticAnchorGraph (IMP::multifit)

SlabWithToroidalPorePairScore (IMP::npctransport)

AmbiguousCompositeRestraint (IMP.pmi1.restraints.proteomics)

DihedralAngleRevoluteJoint (IMP::kinematics)

J

ProbabilisticSubsetFilterTable (IMP::domino)

SlabWithToroidalPoreWireGeometry (IMP::npctransport)

AmbiguousNOERestraint (IMP::isd)

DihedralRestraint (IMP::core)

ProcessOutput (IMP.pmi.output)

Slave (IMP.parallel)

AmbiguousRestraint (IMP::isd)

DihedralSingletonScore (IMP::atom)

JaccardDistanceMatrix (IMP.pmi.io.crosslink)

ProcessOutput (IMP.pmi1.output)

SlaveArray (IMP.parallel)

Analysis (IMP.isd.Analysis)

Direction (IMP::core)

JaccardDistanceMatrix (IMP.pmi1.io.crosslink)

Profile (IMP::saxs)

Slice (IMP::domino)

AnalysisReplicaExchange (IMP.pmi.macros)

DirectionalDOF (IMP::kinematics)

JeffreysPrior (IMP.pmi.restraints.parameters)

ProfileClustering (IMP::saxs)

SmoothingFunction (IMP::atom)

AnalysisReplicaExchange (IMP.pmi1.macros)

DirectionAngle (IMP::core)

JeffreysPrior (IMP.pmi1.restraints.parameters)

ProfileFitter (IMP::saxs)

Soap (IMP::score_functor)

AnalysisReplicaExchange0 (IMP.pmi.macros)

DirectionMover (IMP::core)

JeffreysRestraint (IMP::isd)

Profiler (IMP::benchmark)

SoapPairFilter (IMP::atom)

AnalysisReplicaExchange0 (IMP.pmi1.macros)

DirectorObjectChecker (IMP.test)

Joint (IMP::kinematics)

ProjectingOptions (IMP::em2d)

SoftCylinderPairScore (IMP::misc)

AnchorsData (IMP::multifit)

DiscreteSampler (IMP::domino)

JPGImageReaderWriter (IMP::em2d)

ProjectingParameters (IMP::em2d)

SoftSpherePairScore (IMP::core)

AnchorToCylidnricalPorePairScore (IMP::npctransport)

DisjointSetsSubsetFilterTable (IMP::domino)

K

ProjectionFinder (IMP::em2d)

SoftSubSurfacePairScore (IMP::core)

AndPDBSelector (IMP::atom)

DistanceFilter (IMP::em2d)

ProjectionMask (IMP::em2d)

SoftSuperSurfacePairScore (IMP::core)

Angle (IMP::atom)

DistanceFilterTable (IMP::em2d)

KClosePairsPairScore (IMP::core)

ProjectionParameters (IMP::em2d)

SoftwareProvenance (IMP::core)

AngleRestraint (IMP::core)

DistanceMask (IMP::em)

KernelParameters (IMP::em)

ProjectionParametersScoreState (IMP::em2d)

SolventAccessibleSurface (IMP::saxs)

AngleSingletonScore (IMP::atom)

DistancePairScore (IMP::score_functor)

Key (IMP)

ProjectionStates (IMP::em2d)

SparseGrid3D (IMP::algebra)

AngleTripletScore (IMP::core)

DistancePairScore (IMP::core)

KinematicForest (IMP::kinematics)

ProteinChainRestraint (IMP::npc)

SparseGridStorageD (IMP::algebra)

AngularVelocity (IMP::atom)

DistanceRestraint (IMP.pmi.restraints.basic)

KinematicForestScoreState (IMP::kinematics)

ProteinContactRestraint (IMP::npc)

SparseSymmetricPairMemoizer (IMP)

ApplicationTestCase (IMP.test)

DistanceRestraint (IMP.pmi1.restraints.basic)

KinematicNode (IMP::kinematics)

ProteinKinematics (IMP::kinematics)

SparseUnboundedGrid3D (IMP::algebra)

Array (IMP)

DistanceRestraint (IMP::core)

KinkPairScore (IMP::spb)

ProteinLigandAtomPairScore (IMP::atom)

SparseUnboundedGridD (IMP::algebra)

AssemblyHeader (IMP::multifit)

DistanceRMSDMetric (IMP::spb)

KMeans (IMP::kmeans)

ProteinLigandRestraint (IMP::atom)

SphereD (IMP::algebra)

AssemblySymmetryByDihedralRestraint (IMP::npc)

DistanceTerminiRestraint (IMP::spb)

L

ProteinProximityRestraint (IMP::npc)

SphereDistance (IMP::score_functor)

AssemblySymmetryByDistanceRestraint (IMP::npc)

DistanceToPointRestraint (IMP.pmi.restraints.basic)

ProteinsAnchorsSamplingSpace (IMP::multifit)

SphereDistancePairScore (IMP::core)

Assignment (IMP::domino)

DistanceToPointRestraint (IMP.pmi1.restraints.basic)

LabelGeometry (IMP::display)

ProteomicsData (IMP::multifit)

SphereDistanceToSingletonScore (IMP::core)

AssignmentContainer (IMP::domino)

DistributePairsScoreState (IMP::container)

LangevinThermostatOptimizerState (IMP::atom)

ProteomicsEMAlignmentAtomic (IMP::multifit)

SphereGeometry (IMP::display)

AssignmentsTable (IMP::domino)

DistributeQuadsScoreState (IMP::container)

LateralSurfaceConstraint (IMP::core)

ProtocolOutput (IMP.pmi1.output)

SpherePatch3D (IMP::algebra)

AsymUnit (IMP.pmi.mmcif)

DistributeSingletonsScoreState (IMP::container)

LeavesRefiner (IMP::core)

ProtocolOutput (IMP.pmi1.mmcif)

SphericalVector3D (IMP::algebra)

AsymUnit (IMP.pmi1.mmcif)

DistributeTripletsScoreState (IMP::container)

LennardJones (IMP::atom)

ProtocolOutput (IMP.pmi.output)

SpiderHeader (IMP::em)

Atom (IMP::atom)

Distribution (IMP::saxs)

LennardJonesPairScore (IMP::atom)

ProtocolOutput (IMP.pmi.mmcif)

SpiderImageReaderWriter (IMP::em2d)

AtomicCrossLinkMSRestraint (IMP.pmi.restraints.crosslinking)

Distribution (IMP::isd)

LessPairBySecond (IMP::em2d)

Provenance (IMP::core)

SpiderMapReaderWriter (IMP::em)

AtomicCrossLinkMSRestraint (IMP.pmi1.restraints.crosslinking)

DockOrder (IMP.EMageFit.buildxlinks)

Line3D (IMP::algebra)

Provenanced (IMP::core)

State (IMP.pmi.topology)

AtomicCrossLinkMSRestraint (IMP::isd)

DOF (IMP::kinematics)

Linear (IMP::core)

PseudoAtomicRestraint (IMP.pmi.restraints.stereochemistry)

State (IMP::atom)

ATOMPDBSelector (IMP::atom)

DOFsSampler (IMP::kinematics)

Linear1DFunction (IMP::isd)

PseudoAtomicRestraint (IMP.pmi1.restraints.stereochemistry)

State (IMP.mmcif.util)

AtomType (IMP::atom)

DOFValues (IMP::kinematics)

LinearFit2D (IMP::algebra)

PymolWriter (IMP::display)

StateAdaptor (IMP::misc)

AtomTypePDBSelector (IMP::atom)

Domain (IMP::atom)

LinearInteraction (IMP::npctransport)

PythonDirectedGraph (IMP)

StatHierarchyHandler (IMP.pmi1.output)

AttributeDistancePairScore (IMP::spb)

DominoModel (IMP.EMageFit.domino_model)

LinearInteractionPairScore (IMP::npctransport)

PythonExampleConstraint (IMP.example)

StatHierarchyHandler (IMP.pmi.output)

AttributeOptimizer (IMP)

DominoSampler (IMP::domino)

LinearLowerBound (IMP::score_functor)

PythonExamplePairScore (IMP.example)

Statistical (IMP::score_functor)

AttributeSingletonPredicate (IMP::core)

Dope (IMP::score_functor)

LinearSoftSpherePairScore (IMP::npctransport)

PythonExampleRestraint (IMP.example)

StatisticalPairScore (IMP::core)

AverageDistanceLinkage (IMP::em2d)

DopePairScore (IMP::atom)

LinearVelocity (IMP::atom)

PythonExampleSingletonModifier (IMP.example)

Statistics (IMP.isd.Statistics)

B

DummyRestraint (IMP::em2d)

LinearWellPairScore (IMP::npctransport)

PythonExampleUnaryFunction (IMP.example)

Statistics (IMP::npctransport)

DummyRestraint (IMP::multifit)

ListAssignmentContainer (IMP::domino)

Q

SteepestDescent (IMP::core)

BackbonePDBSelector (IMP::atom)

DynamicListPairContainer (IMP::container)

ListAssignmentsTable (IMP::domino)

StereochemistryPairFilter (IMP::atom)

BallMover (IMP::symmetry)

DynamicListQuadContainer (IMP::container)

ListPairContainer (IMP::container)

QuadConstraint (IMP::core)

Stopwatch (IMP.pmi.tools)

BallMover (IMP::core)

DynamicListSingletonContainer (IMP::container)

ListQuadContainer (IMP::container)

QuadContainer (IMP)

Stopwatch (IMP.pmi1.tools)

BerendsenThermostatOptimizerState (IMP::atom)

DynamicListTripletContainer (IMP::container)

ListSingletonContainer (IMP::container)

QuadContainerAdaptor (IMP)

StructureProvenance (IMP::core)

BinormalTerm (IMP::core)

DynamicNearestNeighbor3D (IMP::algebra)

ListSubsetFilterTable (IMP::domino)

QuadContainerSet (IMP::container)

StructureSource (IMP::atom)

BipartitePairsStatisticsOptimizerState (IMP::npctransport)

E

ListTripletContainer (IMP::container)

QuadContainerStatistics (IMP::container)

StudentTRestraint (IMP::isd)

BiStableDistanceRestraint (IMP.pmi.restraints.basic)

LoadLink (IMP::rmf)

QuadModifier (IMP)

Subset (IMP::domino)

BiStableDistanceRestraint (IMP.pmi1.restraints.basic)

EdgePairGeometry (IMP::core)

LocalPlanner (IMP::kinematics)

QuadPredicate (IMP)

SubsetFilter (IMP::domino)

BivariateFunction (IMP::isd)

EdgePairsGeometry (IMP::core)

LocalSlave (IMP.parallel)

QuadraticClosePairsFinder (IMP::core)

SubsetFilterTable (IMP::domino)

BodyStatisticsOptimizerState (IMP::npctransport)

ElasticNetworkRestraint (IMP.pmi.restraints.stereochemistry)

LogEmbeddingD (IMP::algebra)

QuadRestraint (IMP::core)

SubsetMover (IMP::core)

Bond (IMP::atom)

ElasticNetworkRestraint (IMP.pmi1.restraints.stereochemistry)

LogHolder (IMP.isd.demux_trajs)

QuadsConstraint (IMP::container)

Surface (IMP::core)

ForceFieldParameters::Bond (IMP::atom)

ElectronMicroscopy2D (IMP.pmi.restraints.em2d)

LognormalAmbiguousRestraint (IMP::isd)

QuadScore (IMP)

SurfaceDepthPairScore (IMP::score_functor)

BondAngleRevoluteJoint (IMP::kinematics)

ElectronMicroscopy2D (IMP.pmi1.restraints.em2d)

LogNormalMover (IMP::core)

QuadsOptimizerState (IMP::container)

SurfaceDepthPairScore (IMP::core)

Bonded (IMP::atom)

ElectronMicroscopy2D_FFT (IMP.pmi.restraints.em2d)

LognormalRestraint (IMP::isd)

QuadsRestraint (IMP::container)

SurfaceDistancePairScore (IMP::core)

BondedPairFilter (IMP::atom)

ElectronMicroscopy2D_FFT (IMP.pmi1.restraints.em2d)

LogPairScore (IMP::misc)

QuasiNewton (IMP::gsl)

SurfaceDistancePairScore (IMP::score_functor)

BondEndpointsRefiner (IMP::atom)

ElementTable (IMP::atom)

LogWrapper (IMP::isd)

R

SurfaceGeometry (IMP::core)

BondGeometry (IMP::atom)

Ellipsoid3D (IMP::algebra)

LowestRefinedPairScore (IMP::misc)

SurfaceGeometryConstraint (IMP::core)

BondGraph (IMP::atom)

EllipsoidGeometry (IMP::display)

LRUCache (IMP)

RadialDistributionFunction (IMP::saxs)

SurfaceHeightPairScore (IMP::core)

BondPairContainer (IMP::atom)

EM2DRestraint (IMP::spb)

M

RadiusDependentDistanceMask (IMP::em)

SurfaceHeightPairScore (IMP::score_functor)

BondsGeometry (IMP::atom)

Em2DRestraint (IMP::em2d)

RadiusOfGyrationRestraint (IMP::saxs)

SurfaceMeshGeometry (IMP::display)

BondSingletonScore (IMP::atom)

Em2DRestraintParameters (IMP::em2d)

Manager (IMP.parallel)

RadiusOfGyrationRestraint (IMP::multifit)

SurfaceMover (IMP::core)

BoundedGridRangeD (IMP::algebra)

EM2DScore (IMP::em2d)

MapCrossLinkDataBaseOnStructure (IMP.pmi.io.crosslink)

RAII (IMP)

SurfacesGeometry

BoundingBoxD (IMP::algebra)

Embedding (IMP::statistics)

MapCrossLinkDataBaseOnStructure (IMP.pmi1.io.crosslink)

RangeViewAssignmentContainer (IMP::domino)

SurfaceShellDensityMap (IMP::em)

BoundingBoxGeometry (IMP::display)

EMReaderWriter (IMP::em)

MapDistanceTransform (IMP::em)

RatioVolatilityScore (IMP::saxs)

SurfaceSymmetryConstraint (IMP::core)

BoxedMover (IMP::spb)

Ensemble (IMP.mmcif.util)

MapReaderWriter (IMP::em)

ReadAssignmentContainer (IMP::domino)

SurfaceTetheredChain (IMP::core)

BoxSweepClosePairsFinder (IMP::core)

Ensemble (IMP::multifit)

MarginalHBondRestraint (IMP::isd)

ReadHDF5AssignmentContainer (IMP::domino)

Switching (IMP::isd)

BranchAndBoundAssignmentsTable (IMP::domino)

EnsembleGenerator (IMP::multi_state)

MarginalNOERestraint (IMP::isd)

RecursiveAssignmentsTable (IMP::domino)

Symmetric (IMP::pmi)

BranchAndBoundSampler (IMP::domino)

Entity (IMP.pmi.mmcif)

MasksManager (IMP::em2d)

RecursivePartitionalClusteringEmbedding (IMP::statistics)

Symmetric (IMP::pmi1)

BrownianDynamics (IMP::atom)

Entity (IMP.pmi1.mmcif)

Mass (IMP::atom)

RecursivePartitionalClusteringMetric (IMP::statistics)

SymmetryRestraint (IMP.pmi1.restraints.stereochemistry)

BrownianDynamicsTAMD (IMP::atom)

Entry (IMP.isd.Entry)

MasterCommunicator (IMP.parallel.master_communicator)

RecursiveStates (IMP::domino)

SymmetryRestraint (IMP.pmi.restraints.stereochemistry)

BrownianDynamicsTAMDWithSlabSupport (IMP::npctransport)

EnvelopeFitRestraint (IMP::em)

MatchTemplateResult (IMP::em2d)

RefCountChecker (IMP.test)

System (IMP.pmi.topology)

BuildModel (IMP.pmi.macros)

EnvelopePenetrationRestraint (IMP::em)

MaxVectorKDMetric (IMP::algebra)

Reference (IMP::core)

T

BuildModel (IMP.pmi1.macros)

EnvelopeScore (IMP::em)

MCCGSampler (IMP::core)

ReferenceFrame3D (IMP::algebra)

BuildModel1 (IMP.pmi.macros)

EqualitySubsetFilterTable (IMP::domino)

MeanAbsoluteDifference (IMP::em2d)

ReferenceFrameGeometry (IMP::display)

TableRefiner (IMP::core)

BuildModel1 (IMP.pmi1.macros)

EquivalenceAndExclusionSubsetFilterTable (IMP::domino)

MembraneExclusionRestraint (IMP.npc.npc_restraints)

ReferenceFrameToText (IMP.EMageFit.imp_general.io)

TALOSReader (IMP.isd.TALOSReader)

BuildSystem (IMP.pmi.macros)

EquivalenceSubsetFilterTable (IMP::domino)

MembraneExclusionRestraint (IMP::npc)

RefinedPairsPairScore (IMP::core)

TALOSRestraint (IMP::isd)

C

Error (IMP.parallel)

MembraneRestraint (IMP::pmi)

Refiner (IMP)

TAMDCentroid (IMP::atom)

EuclideanMetric (IMP::statistics)

MembraneRestraint (IMP::pmi1)

Reflection3D (IMP::algebra)

TAMDParticle (IMP::atom)

CAAngleRestraint (IMP::atom)

EuclideanVectorKDMetric (IMP::algebra)

MembraneSurfaceLocationConditionalRestraint (IMP.npc.npc_restraints)

RegistrationResult (IMP::em2d)

TempDir (IMP.test)

CADihedralRestraint (IMP::atom)

LinearInteractionPairScore::EvaluationCache (IMP::npctransport)

MembraneSurfaceLocationConditionalRestraint (IMP::npc)

RelativePositionMover (IMP::em2d)

TempResidue (IMP.pmi.topology)

CAlphaPDBSelector (IMP::atom)

EvaluationState (IMP)

MembraneSurfaceLocationRestraint (IMP.npc.npc_restraints)

RelaxingSpring (IMP::npctransport)

TestCase (IMP.test)

CappedAssignmentContainer (IMP::domino)

EventException (IMP)

MembraneSurfaceLocationRestraint (IMP::npc)

RemoteError (IMP.parallel)

TextInput (IMP)

CBetaPDBSelector (IMP::atom)

EventPairsOptimizerState (IMP::container)

Memoizer (IMP)

RemoveRigidMotionOptimizerState (IMP::atom)

TextOutput (IMP)

CCDLoopClosure (IMP::kinematics)

EventQuadsOptimizerState (IMP::container)

MergeTreeBuilder (IMP::multifit)

RemoveTranslationOptimizerState (IMP::atom)

TextWriter (IMP::display)

CellMover (IMP::spb)

EventSingletonsOptimizerState (IMP::container)

Metric (IMP::statistics)

ReplicaExchange (IMP.pmi1.samplers)

ThreeToOneConverter (IMP.pmi1.tools)

CenteredMat (IMP::em2d)

EventTripletsOptimizerState (IMP::container)

MetricClosePairsFinder (IMP::misc)

ReplicaExchange (IMP::mpi)

TIFFImageReaderWriter (IMP::em2d)

CenterOfMass (IMP::atom)

ExampleComplexRestraint (IMP::example)

MinimumPairRestraint (IMP::container)

ReplicaExchange (IMP.pmi.samplers)

TiltSingletonScore (IMP::spb)

Centroid (IMP::core)

ExampleConstraint (IMP::example)

MinimumPairScore (IMP::container)

ReplicaExchange0 (IMP.pmi.macros)

TopologyPlot (IMP.pmi1.plotting.topology)

CentroidOfRefined (IMP::core)

ExampleDecorator (IMP::example)

MinimumQuadRestraint (IMP::container)

ReplicaExchange0 (IMP.pmi1.macros)

TopologyPlot (IMP.pmi.plotting.topology)

Chain (IMP::atom)

ExampleObject (IMP::example)

MinimumQuadScore (IMP::container)

Representation (IMP::atom)

TopologyReader (IMP.pmi.topology)

ChainPDBSelector (IMP::atom)

ExamplePairScore (IMP::example)

MinimumRestraint (IMP::core)

Representation (IMP.pmi.representation)

TopologyReader (IMP.pmi1.topology)

ChainStatisticsOptimizerState (IMP::npctransport)

ExampleRestraint (IMP::example)

MinimumRestraintScoreSubsetFilterTable (IMP::domino)

Representation (IMP.pmi1.representation)

Torus3D (IMP::algebra)

ChainType (IMP::atom)

ExampleSingletonModifier (IMP::example)

MinimumSingletonRestraint (IMP::container)

RepulsiveDistancePairScore (IMP::isd)

TotalScoreOutput (IMP.pmi1.io)

Charged (IMP::atom)

ExampleSubsetFilterTable (IMP::example)

MinimumSingletonScore (IMP::container)

Residue (IMP::atom)

Transform (IMP::core)

CHARMMAtom (IMP::atom)

ExampleTemplateClassD (IMP::example)

MinimumSphereDistancePairScore (IMP::npc)

ResidueAngleRestraint (IMP.pmi1.restraints.stereochemistry)

Transformation2D (IMP::algebra)

CHARMMAtomTopology (IMP::atom)

ExampleUnaryFunction (IMP::example)

MinimumTripletRestraint (IMP::container)

ResidueAngleRestraint (IMP.pmi.restraints.stereochemistry)

Transformation3D (IMP::algebra)

CHARMMBondEndpoint (IMP::atom)

Exception (IMP)

MinimumTripletScore (IMP::container)

ResidueBondRestraint (IMP.pmi.restraints.stereochemistry)

Transformation3DToText (IMP.EMageFit.imp_general.io)

CHARMMBondParameters (IMP::atom)

ExcludedVolumeRestraint (IMP::core)

Model (IMP)

ResidueBondRestraint (IMP.pmi1.restraints.stereochemistry)

TransformationAndReflectionSymmetry (IMP::core)

CHARMMConnection (IMP::atom)

ExcludedVolumeSphere (IMP.pmi.restraints.stereochemistry)

ModelException (IMP)

ResidueDihedralRestraint (IMP.pmi1.restraints.stereochemistry)

TransformationJoint (IMP::kinematics)

CHARMMDihedralParameters (IMP::atom)

ExcludedVolumeSphere (IMP.pmi1.restraints.stereochemistry)

ModellerRestraints (IMP.modeller)

ResidueDihedralRestraint (IMP.pmi.restraints.stereochemistry)

TransformationSymmetry (IMP::core)

CharmmForceFieldRestraint (IMP.pmi.restraints.stereochemistry)

ExcludeZRangeSingletonScore (IMP::npctransport)

ModelLoader (IMP.modeller)

ResiduePairListParser (IMP.pmi.io.crosslink)

TransformationSymmetry (IMP::spb)

CharmmForceFieldRestraint (IMP.pmi1.restraints.stereochemistry)

ExclusionSubsetFilterTable (IMP::domino)

ModelObject (IMP)

ResiduePairListParser (IMP.pmi1.io.crosslink)

TransformationSymmetryMover (IMP::core)

CHARMMIdealResidueTopology (IMP::atom)

ExclusiveConsecutivePairContainer (IMP::container)

ModifierVisitor (IMP::core)

ResidueRotamer (IMP::rotamer)

TransformedDistancePairScore (IMP::core)

CHARMMInternalCoordinate (IMP::atom)

ExclusiveConsecutivePairFilter (IMP::container)

Mol2Selector (IMP::atom)

ResidueType (IMP::atom)

TransformMover (IMP::pmi1)

CHARMMParameters (IMP::atom)

ExtendedGridIndexD (IMP::algebra)

MolCnSymmAxisDetector (IMP::cnmultifit)

ResidueTypePDBSelector (IMP::atom)

TransformMover (IMP::pmi)

CHARMMPatch (IMP::atom)

ExternalBarrier (IMP.pmi.restraints.basic)

MolecularDynamics (IMP::atom)

Resolution (IMP::pmi)

Transporting (IMP::npctransport)

CHARMMResidueTopology (IMP::atom)

ExternalBarrier (IMP.pmi1.restraints.basic)

MolecularDynamics (IMP.pmi.samplers)

Resolution (IMP::pmi1)

Triangle3D (IMP::algebra)

CHARMMResidueTopologyBase (IMP::atom)

EzRestraint (IMP::atom)

MolecularDynamics (IMP.pmi1.samplers)

Restraint (IMP::saxs)

TriangleGeometry (IMP::display)

CHARMMSegmentTopology (IMP::atom)

F

MolecularDynamics (IMP::isd)

Restraint (IMP)

TripletConstraint (IMP::core)

CHARMMStereochemistryRestraint (IMP::atom)

MolecularDynamicsMover (IMP::isd)

RestraintBase (IMP.pmi1.restraints)

TripletContainer (IMP)

CHARMMTopology (IMP::atom)

FFTFitting (IMP::multifit)

MolecularDynamicsWithWte (IMP::spb)

RestraintBase (IMP.pmi.restraints)

TripletContainerAdaptor (IMP)

ChecksScoreState (IMP::core)

FFTFittingOutput (IMP::multifit)

Molecule (IMP::atom)

RestraintCache (IMP::domino)

TripletContainerSet (IMP::container)

ChiFreeScore (IMP::saxs)

FGChain (IMP::npctransport)

Molecule (IMP.pmi.topology)

RestraintGeometry (IMP::display)

TripletContainerStatistics (IMP::container)

ChildrenRefiner (IMP::core)

FilterGeometry (IMP::display)

MonteCarlo (IMP.pmi.samplers)

RestraintInfo (IMP)

TripletModifier (IMP)

ChiScore (IMP::saxs)

FilterOperator (IMP.pmi.io.crosslink)

MonteCarlo (IMP.pmi1.samplers)

RestraintsAdaptor (IMP)

TripletPredicate (IMP)

ChiScoreLog (IMP::saxs)

FilterOperator (IMP.pmi1.io.crosslink)

MonteCarlo (IMP::core)

RestraintScoreSubsetFilterTable (IMP::domino)

TripletRestraint (IMP::core)

ChiSquaredScore (IMP::em2d)

FilterProvenance (IMP::core)

MonteCarloMover (IMP::core)

RestraintSet (IMP)

TripletsConstraint (IMP::container)

ChiSquareMetric (IMP::spb)

Fine2DRegistrationRestraint (IMP::em2d)

MonteCarloMoverResult (IMP::core)

RestraintSetGeometry (IMP::display)

TripletScore (IMP)

ChiSquareMetric (IMP::statistics)

FitParameters (IMP::saxs)

MonteCarloRelativeMoves (IMP.EMageFit.monte_carlo)

RestraintsScoringFunction (IMP::core)

TripletsOptimizerState (IMP::container)

CloseBipartitePairContainer (IMP::container)

FitRestraint (IMP::em)

MonteCarloWithBasinHopping (IMP::core)

ResultsDB (IMP.EMageFit.solutions_io)

TripletsRestraint (IMP::container)

ClosedCubicSpline (IMP::core)

FittingSolutionRecord (IMP::multifit)

MonteCarloWithLocalOptimization (IMP::core)

RevoluteJoint (IMP::kinematics)

TruncatedHarmonic (IMP::core)

ClosePairContainer (IMP::container)

FittingSolutions (IMP::em)

MonteCarloWithWte (IMP::spb)

RevoluteJointMover (IMP::kinematics)

TwoStateGoModelRestraint (IMP::spb)

ClosePairsFinder (IMP::core)

FittingStates (IMP::multifit)

MoveStatisticsScoreState (IMP::core)

RigidBodiesImageFitRestraint (IMP::em2d)

Typed (IMP::core)

ClosePairsPairScore (IMP::core)

FixedFormatParser (IMP.pmi.io.crosslink)

MRCReaderWriter (IMP::em)

RigidBodiesProfileHandler (IMP::saxs)

TypedPairScore (IMP::core)

Cluster (IMP.pmi.output)

FixedFormatParser (IMP.pmi1.io.crosslink)

MSConnectivityRestraint (IMP::core)

RigidBody (IMP::core)

TypedSitesGeometry (IMP::npctransport)

Cluster (IMP.pmi1.output)

FixedRefiner (IMP::core)

MultipleBinormalRestraint (IMP::core)

RigidBodyAnglePairScore (IMP::core)

TypeException (IMP)

Clustering (IMP.pmi.analysis)

FixedXYZ (IMP::algebra)

MultiStateModel (IMP::multi_state)

RigidBodyDerivativeGeometry (IMP::core)

U

Clustering (IMP.pmi1.analysis)

Flag (IMP)

MultiStateModelScore (IMP::multi_state)

RigidBodyDerivativesGeometry (IMP::core)

ClusterProvenance (IMP::core)

FloatIndex (IMP)

MultivariateFNormalSufficient (IMP::isd)

RigidBodyDiffusion (IMP::atom)

UnaryFunction (IMP)

ClusterSet (IMP::em2d)

FNormal (IMP::isd)

MyMetric (write_a_metric)

RigidBodyDistancePairScore (IMP::core)

UnaryFunctionEvaluate (IMP::score_functor)

CnSymmAxisDetector (IMP::cnmultifit)

ForceFieldParameters (IMP::atom)

N

RigidBodyFrameGeometry (IMP::core)

UnboundedGridRangeD (IMP::algebra)

CoarseCC (IMP::em)

ForceSwitch (IMP::atom)

RigidBodyFramesGeometry (IMP::core)

Uncertainty (IMP::pmi1)

CoarseCCatIntervals (IMP::em)

FormFactorTable (IMP::saxs)

NearestNeighborD (IMP::algebra)

RigidBodyHierarchyGeometry (IMP::core)

Uncertainty (IMP::pmi)

CoarseConvolution (IMP::em)

Fragment (IMP::atom)

NearestNeighborsClosePairsFinder (IMP::core)

RigidBodyMember (IMP::core)

UncheckedWeakPointer (IMP)

CoinFlipPairPredicate (IMP::core)

FreelyJointedChain (IMP::misc)

NeighborsTable (IMP::core)

RigidBodyMover (IMP::symmetry)

Undecorator (IMP)

CoinFlipQuadPredicate (IMP::core)

FretData (IMP::isd)

NestedRigidBodyStates (IMP::domino)

RigidBodyMover (IMP::core)

UniformBackboneSampler (IMP::kinematics)

CoinFlipSingletonPredicate (IMP::core)

FretRestraint (IMP::isd)

NetworkError (IMP.parallel)

RigidBodyNewMover (IMP::spb)

UniformBoundedRestraint (IMP::spb)

CoinFlipTripletPredicate (IMP::core)

FStudentT (IMP::isd)

NOERestraint (IMP::isd)

RigidBodyPackingScore (IMP::spb)

UniformPrior (IMP::isd)

CollisionCrossSection (IMP::em2d)

FunctorLinearInteractionPairScore (IMP::npctransport)

NoMoreSlavesError (IMP.parallel)

RigidBodyStates (IMP::domino)

UnivariateFunction (IMP::isd)

Color (IMP::display)

FunctorLinearSoftSpherePairScore (IMP::npctransport)

NonAlternativePDBSelector (IMP::atom)

RigidBodyTorque (IMP::core)

UnorderedTypePairPredicate (IMP::core)

ColorChange (IMP.pmi1.tools)

FusionRestraint (IMP.pmi.restraints.stereochemistry)

NonCopyable (IMP)

RigidBodyTunneler (IMP::core)

UnorderedTypeQuadPredicate (IMP::core)

Colored (IMP::display)

FusionRestraint (IMP.pmi1.restraints.stereochemistry)

NonHydrogenMol2Selector (IMP::atom)

RigidBodyUmbrella (IMP::core)

UnorderedTypeSingletonPredicate (IMP::core)

CombineProvenance (IMP::core)

FuzzyBoolean (IMP.pmi.restraints.proteomics)

NonHydrogenPDBSelector (IMP::atom)

RigidClosePairsFinder (IMP::core)

UnorderedTypeTripletPredicate (IMP::core)

CommandDispatcher (IMP)

FuzzyBoolean (IMP.pmi1.restraints.proteomics)

NonRigidMember (IMP::core)

RigidLeavesRefiner (IMP::multifit)

UsageException (IMP)

CommonEndpointPairFilter (IMP::misc)

FuzzyRestraint (IMP.pmi.restraints.proteomics)

NonWaterNonHydrogenPDBSelector (IMP::atom)

RigidMember (IMP::core)

V

CompareMultiStateModels (IMP::multi_state)

FuzzyRestraint (IMP.pmi1.restraints.proteomics)

NonWaterPDBSelector (IMP::atom)

RMFFrame (IMP.mmcif.util)

ComplementarityRestraint (IMP::multifit)

G

NormalizedSphereDistancePairScore (IMP::core)

RMFHierarchyHandler (IMP.pmi.output)

Value (IMP)

CompleteLinkage (IMP::em2d)

NormalMover (IMP::core)

RMFHierarchyHandler (IMP.pmi1.output)

ValueException (IMP)

ComponentHeader (IMP::multifit)

Gaussian (IMP::spb)

NormalSigmaPCRestraint (IMP::isd)

RMSD (IMP.pmi.analysis)

Vector (IMP)

CompositeJoint (IMP::kinematics)

Gaussian (IMP::core)

NotPDBSelector (IMP::atom)

RMSD (IMP.pmi1.analysis)

VectorBaseD (IMP::algebra)

CompositeRestraint (IMP.pmi.restraints.proteomics)

Gaussian3D (IMP::algebra)

NPDBSelector (IMP::atom)

RMSDMetric (IMP::spb)

VectorD (IMP::algebra)

CompositeRestraint (IMP.pmi1.restraints.proteomics)

GaussianAnchorEMRestraint (IMP::isd)

Nuisance (IMP::isd)

RMSDOutput (IMP.pmi1.io)

VectorDEmbedding (IMP::statistics)

CompositeRestraint (IMP::npc)

GaussianEMRestraint (IMP.pmi.restraints.em)

NuisanceRangeModifier (IMP::spb)

RotamerAngleTuple (IMP::rotamer)

VectorKDMetric (IMP::algebra)

CompositeRestraint (IMP::pmi)

GaussianEMRestraint (IMP.pmi1.restraints.em)

O

RotamerCalculator (IMP::rotamer)

VelocityScalingOptimizerState (IMP::atom)

CompositeRestraint (IMP::pmi1)

GaussianEMRestraint (IMP::isd)

RotamerLibrary (IMP::rotamer)

VersionInfo (IMP)

CompoundStates (IMP::domino)

GaussianProcessInterpolation (IMP::isd)

Object (IMP)

Rotation2D (IMP::algebra)

VolumeRestraint (IMP::core)

Cone3D (IMP::algebra)

GaussianProcessInterpolationRestraint (IMP::isd)

OneDimensionalDistribution (IMP::isd)

Rotation3D (IMP::algebra)

Voxel (IMP::em)

Configuration (IMP)

GaussianRestraint (IMP::isd)

OneDimensionalSufficientDistribution (IMP::isd)

RRT (IMP::kinematics)

W

ConfigurationSet (IMP)

GeneralizedGuinierPorodFunction (IMP::isd)

OpenCubicSpline (IMP::score_functor)

RRT::RRTNode (IMP::kinematics)

ConfigurationSetRMSDMetric (IMP::statistics)

GenericAttributeSingletonScore (IMP::core)

OpenCubicSpline (IMP::core)

RunInTempDir (IMP.test)

WarningContext (IMP)

ConfigurationSetXYZEmbedding (IMP::statistics)

GenericBoundingBox3DSingletonScore (IMP::core)

Optimizer (IMP)

S

WaterPDBSelector (IMP::atom)

ConjugateGradients (IMP.pmi.samplers)

GenericBoundingSphere3DSingletonScore (IMP::core)

OptimizerState (IMP)

WeakPointer (IMP)

ConjugateGradients (IMP.pmi1.samplers)

GenericDistanceToSingletonScore (IMP::core)

Order (IMP::domino)

SameParticlePairFilter (IMP::spb)

Weight (IMP::isd)

ConjugateGradients (IMP::gsl)

GeometricHash (IMP::multifit)

OrderedDefaultDict (IMP.pmi1.tools)

SameResiduePairFilter (IMP::atom)

WeightedDerivativesToRefined (IMP::core)

ConjugateGradients (IMP::core)

GeometricPrimitiveD (IMP::algebra)

OrderedTypePairPredicate (IMP::core)

SameRigidBodyPairFilter (IMP::spb)

WeightedExcludedVolumeRestraint (IMP::multifit)

ConnectingPairContainer (IMP::container)

Geometry (IMP::display)

OrderedTypeQuadPredicate (IMP::core)

SampleAssignmentContainer (IMP::domino)

WeightedFitParameters (IMP::saxs)

ConnectivityCrossLinkMS (IMP.pmi.restraints.crosslinking)

GeometryProcessor (IMP::display)

OrderedTypeSingletonPredicate (IMP::core)

SampledDensityMap (IMP::em)

WeightedProfileFitter (IMP::saxs)

ConnectivityCrossLinkMS (IMP.pmi1.restraints.crosslinking)

GeometrySet (IMP::display)

OrderedTypeTripletPredicate (IMP::core)

SampleProvenance (IMP::core)

WeightedSphereDistancePairScore (IMP::core)

ConnectivityNetworkRestraint (IMP.pmi.restraints.proteomics)

GetModelDensity (IMP.pmi.analysis)

OrientedSoap (IMP::score_functor)

Sampler (IMP)

WeightedSum (IMP::core)

ConnectivityNetworkRestraint (IMP.pmi1.restraints.proteomics)

GetModelDensity (IMP.pmi1.analysis)

OrientedSoapPairScore (IMP::atom)

SaveLink (IMP::rmf)

WeightedSumOfExponential (IMP::core)

ConnectivityRestraint (IMP.pmi.restraints.proteomics)

GlobalStatisticsOptimizerState (IMP::npctransport)

OrPDBSelector (IMP::atom)

SaveOptimizerState (IMP::rmf)

WeightMover (IMP::isd)

ConnectivityRestraint (IMP.pmi.restraints.stereochemistry)

GridClosePairsFinder (IMP::core)

Output (IMP.pmi.output)

SaveToConfigurationSetOptimizerState (IMP)

WeightRestraint (IMP::isd)

ConnectivityRestraint (IMP.pmi1.restraints.proteomics)

GridD (IMP::algebra)

Output (IMP.pmi1.output)

SAXSISDRestraint (IMP.pmi.restraints.saxs)

WeightRestraint (IMP.pmi1.restraints.parameters)

ConnectivityRestraint (IMP.pmi1.restraints.stereochemistry)

GridIndexD (IMP::algebra)

OutputStatistics (IMP.pmi.output)

SAXSISDRestraint (IMP.pmi1.restraints.saxs)

WeightRestraint (IMP.pmi.restraints.parameters)

ConnectivityRestraint (IMP::core)

GridStates (IMP::em2d)

OutputStatistics (IMP.pmi1.output)

SAXSMultiStateModelScore (IMP::multi_state)

WeightScore (IMP::score_functor)

ConnollySurfacePoint (IMP::algebra)

GSLOptimizer (IMP::gsl)

P

SAXSRestraint (IMP.pmi.restraints.saxs)

WormLikeChain (IMP::misc)

ConsecutivePairContainer (IMP::container)

H

SAXSRestraint (IMP.pmi1.restraints.saxs)

WriteAssignmentContainer (IMP::domino)

ConsecutivePairFilter (IMP::container)

PackedAssignmentContainer (IMP::domino)

Scale (IMP::isd)

WriteHDF5AssignmentContainer (IMP::domino)

ConstantPairPredicate (IMP::core)

Harmonic (IMP::score_functor)

PairConstraint (IMP::core)

ScopedAddCacheAttribute (IMP)

WriteOptimizerState (IMP::display)

ConstantQuadPredicate (IMP::core)

Harmonic (IMP::core)

PairContainer (IMP)

ScopedSetAttribute (IMP)

WritePDBOptimizerState (IMP::atom)

ConstantRestraint (IMP::core)

HarmonicDistancePairScore (IMP::core)

PairContainerAdaptor (IMP)

Score (IMP::score_functor)

Writer (IMP::display)

ConstantSingletonPredicate (IMP::core)

HarmonicLowerBound (IMP::score_functor)

PairContainerSet (IMP::container)

ScoreAccumulator (IMP)

WriterAdaptor (IMP::display)

ConstantTripletPredicate (IMP::core)

HarmonicLowerBound (IMP::core)

PairContainerStatistics (IMP::container)

ScoreFunction (IMP::em2d)

WriteRestraintScoresOptimizerState (IMP::core)

Constraint (IMP)

HarmonicSphereDistancePairScore (IMP::core)

PairGeometry (IMP::display)

ScoreState (IMP)

X

ConstVector (IMP)

HarmonicSpringSingletonScore (IMP::npctransport)

PairListSubsetFilterTable (IMP::domino)

ScoreUnaryFunction (IMP::score_functor)

ContactMapMetric (IMP::spb)

HarmonicSurfaceDepthPairScore (IMP::core)

PairModifier (IMP)

Scoring (IMP::npctransport)

Xlink (IMP.EMageFit.buildxlinks)

Container (IMP)

HarmonicSurfaceDistancePairScore (IMP::core)

PairPredicate (IMP)

ScoringFunction (IMP)

XlinksDict (IMP.EMageFit.buildxlinks)

Context (IMP.parallel)

HarmonicSurfaceHeightPairScore (IMP::core)

PairRestraint (IMP::core)

ScoringFunctionAdaptor (IMP)

XLTable (IMP.pmi1.io.xltable)

Copy (IMP::atom)

HarmonicUpperBound (IMP::score_functor)

PairsConstraint (IMP::container)

ScriptProvenance (IMP::core)

XLTable (IMP.pmi.io.xltable)

Cosine (IMP::core)

HarmonicUpperBound (IMP::core)

PairScore (IMP)

SecondaryStructure (IMP.pmi.restraints.stereochemistry)

XorPDBSelector (IMP::atom)

CoulombPairScore (IMP::atom)

HarmonicUpperBoundSphereDiameterPairScore (IMP::core)

PairsGeometry (IMP::display)

SecondaryStructure (IMP.pmi1.restraints.stereochemistry)

XplorReaderWriter (IMP::em)

Covariance1DFunction (IMP::isd)

HarmonicUpperBoundSphereDistancePairScore (IMP::core)

PairsOptimizerState (IMP::container)

SecondaryStructureResidue (IMP::atom)

XYRadialPositionLowerRestraint (IMP::npc)

Cover (IMP::core)

HarmonicWell (IMP::core)

PairsRestraint (IMP::container)

Segment3D (IMP::algebra)

XYRadialPositionLowerRestraint (IMP.npc.npc_restraints)

CoverBond (IMP::atom)

HarmonicWellPairScore (IMP::npctransport)

ParabolicFit2D (IMP::algebra)

SegmentationParameters (IMP::em2d)

XYRadialPositionRestraint (IMP::npc)

CoverRefined (IMP::core)

HasHigherCCC (IMP::em2d)

Particle (IMP)

SegmentGeometry (IMP::display)

XYRadialPositionRestraint (IMP.npc.npc_restraints)

CPDBSelector (IMP::atom)

HasLowerScore (IMP::em2d)

ParticleAdaptor (IMP)

Segments (IMP.pmi1.tools)

XYRadialPositionUpperRestraint (IMP::npc)

CreateLogContext (IMP)

HeapAssignmentContainer (IMP::domino)

ParticleEmbedding (IMP::statistics)

Selection (IMP::atom)

XYRadialPositionUpperRestraint (IMP.npc.npc_restraints)

CrossCorrelationRestraint (IMP.pmi.restraints.em)

HeapRecord (IMP.EMageFit.solutions_io)

ParticleFactory (IMP::npctransport)

SelectionGeometry (IMP::atom)

XYZ (IMP::core)

CrossCorrelationRestraint (IMP.pmi1.restraints.em)

HelixDecorator (IMP::spb)

ParticleIndexAdaptor (IMP)

Sequences (IMP.pmi.topology)

XYZDerivativeGeometry (IMP::core)

CrossLinkData (IMP::isd)

HelixRestraint (IMP.pmi.restraints.stereochemistry)

ParticleIndexesAdaptor (IMP)

Sequences (IMP.pmi1.topology)

XYZDerivativesGeometry (IMP::core)

CrossLinkDataBaseFromStructure (IMP.pmi.io.crosslink)

HelixRestraint (IMP.pmi1.restraints.stereochemistry)

ParticleIndexPairsAdaptor (IMP)

SerialMover (IMP::core)

XYZR (IMP::core)

CrossLinkDataBaseFromStructure (IMP.pmi1.io.crosslink)

HelixRestraint (IMP::atom)

ParticleInputs (IMP)

SetCheckState (IMP)

XYZRGeometry (IMP::core)

CrossLinkDataBaseKeywordsConverter (IMP.pmi.io.crosslink)

HierarchiesGeometry (IMP::atom)

ParticleOutputs (IMP)

SetLogState (IMP)

XYZRsGeometry (IMP::core)

CrossLinkDataBaseKeywordsConverter (IMP.pmi1.io.crosslink)

Hierarchy (IMP::core)

ParticlesAdaptor (IMP::domino)

SetLogTarget (IMP)

XYZStates (IMP::domino)

CrossLinkingMassSpectrometryRestraint (IMP.pmi.restraints.crosslinking)

Hierarchy (IMP::atom)

ParticlesDummyRestraint (IMP::em2d)

SetNumberOfThreads (IMP)

Y

CrossLinkingMassSpectrometryRestraint (IMP.pmi1.restraints.crosslinking)

HierarchyCounter (IMP::core)

ParticleStates (IMP::domino)

SettingsData (IMP::multifit)

CrossLinkMS (IMP.pmi1.nonmantained)

HierarchyDatabase (IMP.pmi.tools)

ParticleStatesTable (IMP::domino)

SetupConnectivityNetworkRestraint (IMP.pmi.restraints.proteomics)

YAxialPositionLowerRestraint (IMP.npc.npc_restraints)

CrossLinkMSRestraint (IMP::isd)

HierarchyDatabase (IMP.pmi1.tools)

ParticleTransportStatisticsOptimizerState (IMP::npctransport)

SetupConnectivityNetworkRestraint (IMP.pmi1.restraints.proteomics)

YAxialPositionLowerRestraint (IMP::npc)

CrossLinkTable (IMP.pmi.analysis)

HierarchyGeometry (IMP::atom)

PartitionalClustering (IMP::statistics)

SetupMembraneRestraint (IMP.pmi1.restraints.proteomics)

YAxialPositionRestraint (IMP::npc)

CrossLinkTable (IMP.pmi1.analysis)

HierarchyLoadLink (IMP::rmf)

PartitionalClusteringWithCenter (IMP::statistics)

SetupMembraneRestraint (IMP.pmi.restraints.proteomics)

YAxialPositionRestraint (IMP.npc.npc_restraints)

CustomXYZR (IMP::misc)

HierarchySaveLink (IMP::rmf)

PathLocalPlanner (IMP::kinematics)

SGEPESlaveArray (IMP.parallel)

YAxialPositionUpperRestraint (IMP.npc.npc_restraints)

CvEstimator (IMP.isd.TuneRex)

HierarchyTraits (IMP::core)

PbcBoxedMover (IMP::spb)

SGEQsubSlaveArray (IMP.parallel)

YAxialPositionUpperRestraint (IMP::npc)

Cylinder3D (IMP::algebra)

HierarchyVisitor (IMP::core)

PbcBoxedRigidBodyMover (IMP::spb)

Shift (IMP::score_functor)

Z

CylinderGeometry (IMP::display)

HierarchyWithSitesLoadLink (IMP::npctransport)

PCAAligner (IMP::em)

Showable (IMP)

CylinderRestraint (IMP.pmi.restraints.basic)

HierarchyWithSitesSaveLink (IMP::npctransport)

PCAFitRestraint (IMP::em)

SigmoidRestraintSphere (IMP::pmi)

ZAxialPositionLowerRestraint (IMP::npc)

CylinderRestraint (IMP.pmi1.restraints.basic)

HighDensityEmbedding (IMP::em)

PCAFitRestraint (IMP::em2d)

SigmoidRestraintSphere (IMP::pmi1)

ZAxialPositionLowerRestraint (IMP.npc.npc_restraints)

CysteineCrossLinkData (IMP::isd)

HistogramD (IMP::statistics)

PDBSelector (IMP::atom)

SimpleAssignmentsTable (IMP::domino)

ZAxialPositionRestraint (IMP::npc)

CysteineCrossLinkRestraint (IMP::isd)

History (IMP.isd.History)

PDBSequences (IMP.pmi.topology)

SimpleLoadLink (IMP::rmf)

ZAxialPositionRestraint (IMP.npc.npc_restraints)

D

HybridMonteCarlo (IMP::isd)

PenalizedComplexityPrior (IMP::isd)

SimpleSaveLink (IMP::rmf)

ZAxialPositionUpperRestraint (IMP::npc)

HydrogenPDBSelector (IMP::atom)

PerinuclearVolumeLocationRestraint (IMP::npc)

Simplex (IMP::gsl)

ZAxialPositionUpperRestraint (IMP.npc.npc_restraints)

Database2 (IMP.EMageFit.database)

I

PermutationStates (IMP::domino)

SimulationData (IMP::npctransport)

ZBiasSingletonScore (IMP::npctransport)

DataEntry (IMP.pmi.output)

Pipe (IMP.isd.utils)

Simulator (IMP::atom)

p

DataEntry (IMP.pmi1.output)

Image (IMP::em2d)

PivyWriter (IMP::display)

SingleLinkage (IMP::em2d)

DataObject (IMP::core)

ImageHeader (IMP::em)

Plane3D (IMP::algebra)

SingletonConstraint (IMP::core)

piecewise_linear_distribution (IMP)

DataPointsAssignment (IMP::multifit)

ImageReaderWriter (IMP::em2d)

PlaneDihedralRestraint (IMP.pmi1.restraints.stereochemistry)

SingletonContainer (IMP)

s

DecayPairContainerOptimizerState (IMP::misc)

IMPRestraints (IMP.modeller)

PlaneDihedralRestraint (IMP.pmi.restraints.stereochemistry)

SingletonContainerAdaptor (IMP)

Decorator (IMP)

ImproperSingletonScore (IMP::atom)

PlaneGeometry (IMP::display)

SingletonContainerSet (IMP::container)

sfo_common (IMP.isd.shared_functions)

A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | Q | R | S | T | U | V | W | X | Y | Z