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IMP Reference Guide  2.10.1
The Integrative Modeling Platform
IMP::npctransport::SitesPairScore Member List

This is the complete list of members for IMP::npctransport::SitesPairScore, including all inherited members.

Argument typedef (defined in IMP::PairScore)IMP::PairScore
clear_caches()IMP::Objectvirtual
create_current_decomposition(Model *m, const ParticleIndexPair &vt) const IMP::PairScore
do_create_current_decomposition(Model *m, const ParticleIndexPair &vt) const IMP::PairScoreprotectedvirtual
do_destroy()IMP::Objectprotectedvirtual
do_get_inputs(Model *m, const ParticleIndexes &pis) const IMP::npctransport::SitesPairScorevirtual
evaluate_if_good_index(Model *m, const ParticleIndexPairs &p, DerivativeAccumulator *da, double max, unsigned int lower_bound, unsigned int upper_bound) const (defined in IMP::npctransport::LinearInteractionPairScore)IMP::npctransport::LinearInteractionPairScore
IMP::PairScore::evaluate_if_good_index(Model *m, const ParticleIndexPair &vt, DerivativeAccumulator *da, double max) const IMP::PairScorevirtual
evaluate_if_good_indexes(Model *m, const ParticleIndexPairs &p, DerivativeAccumulator *da, double max, unsigned int lower_bound, unsigned int upper_bound) const IMP::npctransport::SitesPairScorevirtual
evaluate_index(Model *m, const ParticleIndexPair &p, DerivativeAccumulator *da) const IMP::npctransport::SitesPairScorevirtual
IMP::npctransport::LinearInteractionPairScore::evaluate_index(algebra::Sphere3D const &s0, algebra::Sphere3D const &s1, algebra::Sphere3D &ds0, algebra::Sphere3D &ds1, DerivativeAccumulator *da) const IMP::npctransport::LinearInteractionPairScoreprotected
evaluate_indexes(Model *m, const ParticleIndexPairs &p, DerivativeAccumulator *da, unsigned int lower_bound, unsigned int upper_bound) const IMP::npctransport::SitesPairScorevirtual
evaluate_site_contributions(Model *m, const ParticleIndexPair &pip, DerivativeAccumulator *da, boost::tuple< unsigned int, std::vector< unsigned int >, std::vector< unsigned int > >(*contacts_accumulator)) const IMP::npctransport::SitesPairScore
evaluate_site_contributions_with_internal_tables(algebra::Sphere3D const *spheres_table, double const **quaternions_tables, algebra::Sphere3D *sphere_derivatives_table, double **torques_tables, const ParticleIndexPair &pip, DerivativeAccumulator *da, boost::tuple< unsigned int, std::vector< unsigned int >, std::vector< unsigned int > >(*contacts_accumulator)=nullptr) const IMP::npctransport::SitesPairScore
get_check_level() const (defined in IMP::Object)IMP::Object
get_evaluation_cache() const (defined in IMP::npctransport::LinearInteractionPairScore)IMP::npctransport::LinearInteractionPairScore
get_inputs(Model *m, const ParticleIndexes &pis) const IMP::ParticleInputs
get_k_attraction() const IMP::npctransport::LinearInteractionPairScore
get_k_repulsion() const IMP::npctransport::LinearInteractionPairScore
get_log_level() const (defined in IMP::Object)IMP::Object
get_name() const (defined in IMP::Object)IMP::Object
get_parameters() const (defined in IMP::npctransport::SitesPairScore)IMP::npctransport::SitesPairScore
get_range_attraction() const IMP::npctransport::LinearInteractionPairScore
get_sites_k() const IMP::npctransport::SitesPairScore
get_sites_range() const IMP::npctransport::SitesPairScore
get_type_name() const (defined in IMP::npctransport::SitesPairScore)IMP::npctransport::SitesPairScorevirtual
get_version_info() const IMP::npctransport::SitesPairScorevirtual
IndexArgument typedef (defined in IMP::PairScore)IMP::PairScore
LinearInteractionPairScore(double k_rep, double range_attr, double k_attr, std::string name="LinearIDPairScore%1%")IMP::npctransport::LinearInteractionPairScore
Modifier typedef (defined in IMP::PairScore)IMP::PairScore
NonCopyable() (defined in IMP::NonCopyable)IMP::NonCopyableprotected
Object(std::string name)IMP::Objectprotected
PairScore(std::string name="PairScore %1%") (defined in IMP::PairScore)IMP::PairScore
PassArgument typedef (defined in IMP::PairScore)IMP::PairScore
PassIndexArgument typedef (defined in IMP::PairScore)IMP::PairScore
set_check_level(CheckLevel l)IMP::Object
set_k_attraction(double k_attr)IMP::npctransport::LinearInteractionPairScore
set_k_repulsion(double k_rep)IMP::npctransport::LinearInteractionPairScore
set_log_level(LogLevel l)IMP::Object
set_name(std::string name) (defined in IMP::Object)IMP::Object
set_sites(const algebra::Sphere3Ds &sites0, const algebra::Sphere3Ds &sites1) (defined in IMP::npctransport::SitesPairScore)IMP::npctransport::SitesPairScore
set_sites0(const algebra::Sphere3Ds &sites0) (defined in IMP::npctransport::SitesPairScore)IMP::npctransport::SitesPairScore
set_sites1(const algebra::Sphere3Ds &sites1) (defined in IMP::npctransport::SitesPairScore)IMP::npctransport::SitesPairScore
set_was_used(bool tf) const IMP::Object
show(std::ostream &out=std::cout) const (defined in IMP::Object)IMP::Object
SitesPairScore(double range, double k, double sigma0_deg, double sigma1_deg, double range_nonspec_attraction, double k_nonspec_attraction, double k_nonspec_repulsion, const algebra::Sphere3Ds &sites0, const algebra::Sphere3Ds &sites1)IMP::npctransport::SitesPairScore
~LinearInteractionPairScore() (defined in IMP::npctransport::LinearInteractionPairScore)IMP::npctransport::LinearInteractionPairScoreprotectedvirtual
~Object() (defined in IMP::Object)IMP::Objectvirtual
~ParticleInputs() (defined in IMP::ParticleInputs)IMP::ParticleInputsprotectedvirtual
~SitesPairScore() (defined in IMP::npctransport::SitesPairScore)IMP::npctransport::SitesPairScoreprotectedvirtual