10 from __future__
import print_function, division, absolute_import
15 from sys
import version_info
as _swig_python_version_info
16 if _swig_python_version_info >= (2, 7, 0):
17 def swig_import_helper():
19 pkg = __name__.rpartition(
'.')[0]
20 mname =
'.'.join((pkg,
'_IMP_pmi')).lstrip(
'.')
22 return importlib.import_module(mname)
24 return importlib.import_module(
'_IMP_pmi')
25 _IMP_pmi = swig_import_helper()
26 del swig_import_helper
27 elif _swig_python_version_info >= (2, 6, 0):
28 def swig_import_helper():
29 from os.path
import dirname
33 fp, pathname, description = imp.find_module(
'_IMP_pmi', [dirname(__file__)])
39 _mod = imp.load_module(
'_IMP_pmi', fp, pathname, description)
43 _IMP_pmi = swig_import_helper()
44 del swig_import_helper
47 del _swig_python_version_info
49 _swig_property = property
54 import builtins
as __builtin__
58 def _swig_setattr_nondynamic(self, class_type, name, value, static=1):
59 if (name ==
"thisown"):
60 return self.this.own(value)
62 if type(value).__name__ ==
'SwigPyObject':
63 self.__dict__[name] = value
65 method = class_type.__swig_setmethods__.get(name,
None)
67 return method(self, value)
69 object.__setattr__(self, name, value)
71 raise AttributeError(
"You cannot add attributes to %s" % self)
74 def _swig_setattr(self, class_type, name, value):
75 return _swig_setattr_nondynamic(self, class_type, name, value, 0)
78 def _swig_getattr(self, class_type, name):
79 if (name ==
"thisown"):
80 return self.this.own()
81 method = class_type.__swig_getmethods__.get(name,
None)
84 raise AttributeError(
"'%s' object has no attribute '%s'" % (class_type.__name__, name))
89 strthis =
"proxy of " + self.this.__repr__()
90 except __builtin__.Exception:
92 return "<%s.%s; %s >" % (self.__class__.__module__, self.__class__.__name__, strthis,)
95 def _swig_setattr_nondynamic_method(set):
96 def set_attr(self, name, value):
97 if (name ==
"thisown"):
98 return self.this.own(value)
99 if hasattr(self, name)
or (name ==
"this"):
100 set(self, name, value)
102 raise AttributeError(
"You cannot add attributes to %s" % self)
108 weakref_proxy = weakref.proxy
109 except __builtin__.Exception:
110 weakref_proxy =
lambda x: x
113 class IMP_PMI_SwigPyIterator(object):
114 """Proxy of C++ swig::IMP_PMI_SwigPyIterator class."""
116 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
118 def __init__(self, *args, **kwargs):
119 raise AttributeError(
"No constructor defined - class is abstract")
120 __repr__ = _swig_repr
121 __swig_destroy__ = _IMP_pmi.delete_IMP_PMI_SwigPyIterator
122 __del__ =
lambda self:
None
125 """value(IMP_PMI_SwigPyIterator self) -> PyObject *"""
126 return _IMP_pmi.IMP_PMI_SwigPyIterator_value(self)
131 incr(IMP_PMI_SwigPyIterator self, size_t n=1) -> IMP_PMI_SwigPyIterator
132 incr(IMP_PMI_SwigPyIterator self) -> IMP_PMI_SwigPyIterator
134 return _IMP_pmi.IMP_PMI_SwigPyIterator_incr(self, n)
139 decr(IMP_PMI_SwigPyIterator self, size_t n=1) -> IMP_PMI_SwigPyIterator
140 decr(IMP_PMI_SwigPyIterator self) -> IMP_PMI_SwigPyIterator
142 return _IMP_pmi.IMP_PMI_SwigPyIterator_decr(self, n)
145 def distance(self, x):
146 """distance(IMP_PMI_SwigPyIterator self, IMP_PMI_SwigPyIterator x) -> ptrdiff_t"""
147 return _IMP_pmi.IMP_PMI_SwigPyIterator_distance(self, x)
151 """equal(IMP_PMI_SwigPyIterator self, IMP_PMI_SwigPyIterator x) -> bool"""
152 return _IMP_pmi.IMP_PMI_SwigPyIterator_equal(self, x)
156 """copy(IMP_PMI_SwigPyIterator self) -> IMP_PMI_SwigPyIterator"""
157 return _IMP_pmi.IMP_PMI_SwigPyIterator_copy(self)
161 """next(IMP_PMI_SwigPyIterator self) -> PyObject *"""
162 return _IMP_pmi.IMP_PMI_SwigPyIterator_next(self)
166 """__next__(IMP_PMI_SwigPyIterator self) -> PyObject *"""
167 return _IMP_pmi.IMP_PMI_SwigPyIterator___next__(self)
171 """previous(IMP_PMI_SwigPyIterator self) -> PyObject *"""
172 return _IMP_pmi.IMP_PMI_SwigPyIterator_previous(self)
175 def advance(self, n):
176 """advance(IMP_PMI_SwigPyIterator self, ptrdiff_t n) -> IMP_PMI_SwigPyIterator"""
177 return _IMP_pmi.IMP_PMI_SwigPyIterator_advance(self, n)
181 """__eq__(IMP_PMI_SwigPyIterator self, IMP_PMI_SwigPyIterator x) -> bool"""
182 return _IMP_pmi.IMP_PMI_SwigPyIterator___eq__(self, x)
186 """__ne__(IMP_PMI_SwigPyIterator self, IMP_PMI_SwigPyIterator x) -> bool"""
187 return _IMP_pmi.IMP_PMI_SwigPyIterator___ne__(self, x)
190 def __iadd__(self, n):
191 """__iadd__(IMP_PMI_SwigPyIterator self, ptrdiff_t n) -> IMP_PMI_SwigPyIterator"""
192 return _IMP_pmi.IMP_PMI_SwigPyIterator___iadd__(self, n)
195 def __isub__(self, n):
196 """__isub__(IMP_PMI_SwigPyIterator self, ptrdiff_t n) -> IMP_PMI_SwigPyIterator"""
197 return _IMP_pmi.IMP_PMI_SwigPyIterator___isub__(self, n)
200 def __add__(self, n):
201 """__add__(IMP_PMI_SwigPyIterator self, ptrdiff_t n) -> IMP_PMI_SwigPyIterator"""
202 return _IMP_pmi.IMP_PMI_SwigPyIterator___add__(self, n)
205 def __sub__(self, *args):
207 __sub__(IMP_PMI_SwigPyIterator self, ptrdiff_t n) -> IMP_PMI_SwigPyIterator
208 __sub__(IMP_PMI_SwigPyIterator self, IMP_PMI_SwigPyIterator x) -> ptrdiff_t
210 return _IMP_pmi.IMP_PMI_SwigPyIterator___sub__(self, *args)
214 IMP_PMI_SwigPyIterator_swigregister = _IMP_pmi.IMP_PMI_SwigPyIterator_swigregister
215 IMP_PMI_SwigPyIterator_swigregister(IMP_PMI_SwigPyIterator)
223 IMP_DEBUG = _IMP_pmi.IMP_DEBUG
224 IMP_RELEASE = _IMP_pmi.IMP_RELEASE
225 IMP_SILENT = _IMP_pmi.IMP_SILENT
226 IMP_PROGRESS = _IMP_pmi.IMP_PROGRESS
227 IMP_TERSE = _IMP_pmi.IMP_TERSE
228 IMP_VERBOSE = _IMP_pmi.IMP_VERBOSE
229 IMP_MEMORY = _IMP_pmi.IMP_MEMORY
230 IMP_NONE = _IMP_pmi.IMP_NONE
231 IMP_USAGE = _IMP_pmi.IMP_USAGE
232 IMP_INTERNAL = _IMP_pmi.IMP_INTERNAL
233 IMP_KERNEL_HAS_LOG4CXX = _IMP_pmi.IMP_KERNEL_HAS_LOG4CXX
234 IMP_COMPILER_HAS_AUTO = _IMP_pmi.IMP_COMPILER_HAS_AUTO
235 IMP_COMPILER_HAS_DEBUG_VECTOR = _IMP_pmi.IMP_COMPILER_HAS_DEBUG_VECTOR
236 IMP_COMPILER_HAS_UNIQUE_PTR = _IMP_pmi.IMP_COMPILER_HAS_UNIQUE_PTR
237 IMP_KERNEL_HAS_BOOST_RANDOM = _IMP_pmi.IMP_KERNEL_HAS_BOOST_RANDOM
238 IMP_KERNEL_HAS_GPERFTOOLS = _IMP_pmi.IMP_KERNEL_HAS_GPERFTOOLS
239 IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER = _IMP_pmi.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER
240 IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER = _IMP_pmi.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER
241 IMPKERNEL_SHOW_WARNINGS = _IMP_pmi.IMPKERNEL_SHOW_WARNINGS
244 class _DirectorObjects(object):
245 """@internal Simple class to keep references to director objects
246 to prevent premature deletion."""
249 def register(self, obj):
250 """Take a reference to a director object; will only work for
251 refcounted C++ classes"""
252 if hasattr(obj,
'get_ref_count'):
253 self._objects.append(obj)
255 """Only drop our reference and allow cleanup by Python if no other
256 Python references exist (we hold 3 references: one in self._objects,
257 one in x, and one in the argument list for getrefcount) *and* no
258 other C++ references exist (the Python object always holds one)"""
259 objs = [x
for x
in self._objects
if sys.getrefcount(x) > 3 \
260 or x.get_ref_count() > 1]
264 def get_object_count(self):
265 """Get number of director objects (useful for testing only)"""
266 return len(self._objects)
267 _director_objects = _DirectorObjects()
269 class _ostream(object):
270 """Proxy of C++ std::ostream class."""
272 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
274 def __init__(self, *args, **kwargs):
275 raise AttributeError(
"No constructor defined")
276 __repr__ = _swig_repr
278 def write(self, osa_buf):
279 """write(_ostream self, char const * osa_buf)"""
280 return _IMP_pmi._ostream_write(self, osa_buf)
282 _ostream_swigregister = _IMP_pmi._ostream_swigregister
283 _ostream_swigregister(_ostream)
285 IMP_COMPILER_HAS_OVERRIDE = _IMP_pmi.IMP_COMPILER_HAS_OVERRIDE
286 IMP_COMPILER_HAS_FINAL = _IMP_pmi.IMP_COMPILER_HAS_FINAL
287 IMP_HAS_NOEXCEPT = _IMP_pmi.IMP_HAS_NOEXCEPT
288 IMP_C_OPEN_BINARY = _IMP_pmi.IMP_C_OPEN_BINARY
290 IMP_CGAL_HAS_BOOST_FILESYSTEM = _IMP_pmi.IMP_CGAL_HAS_BOOST_FILESYSTEM
291 IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS = _IMP_pmi.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS
292 IMP_CGAL_HAS_BOOST_RANDOM = _IMP_pmi.IMP_CGAL_HAS_BOOST_RANDOM
293 IMP_CGAL_HAS_BOOST_SYSTEM = _IMP_pmi.IMP_CGAL_HAS_BOOST_SYSTEM
294 IMPCGAL_SHOW_WARNINGS = _IMP_pmi.IMPCGAL_SHOW_WARNINGS
296 IMP_MMCIF_HAS_BOOST_FILESYSTEM = _IMP_pmi.IMP_MMCIF_HAS_BOOST_FILESYSTEM
297 IMP_MMCIF_HAS_BOOST_PROGRAMOPTIONS = _IMP_pmi.IMP_MMCIF_HAS_BOOST_PROGRAMOPTIONS
298 IMP_MMCIF_HAS_BOOST_RANDOM = _IMP_pmi.IMP_MMCIF_HAS_BOOST_RANDOM
299 IMP_MMCIF_HAS_BOOST_SYSTEM = _IMP_pmi.IMP_MMCIF_HAS_BOOST_SYSTEM
300 IMPMMCIF_SHOW_WARNINGS = _IMP_pmi.IMPMMCIF_SHOW_WARNINGS
302 IMP_ALGEBRA_HAS_IMP_CGAL = _IMP_pmi.IMP_ALGEBRA_HAS_IMP_CGAL
303 IMP_ALGEBRA_HAS_BOOST_FILESYSTEM = _IMP_pmi.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM
304 IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS = _IMP_pmi.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS
305 IMP_ALGEBRA_HAS_BOOST_RANDOM = _IMP_pmi.IMP_ALGEBRA_HAS_BOOST_RANDOM
306 IMP_ALGEBRA_HAS_BOOST_SYSTEM = _IMP_pmi.IMP_ALGEBRA_HAS_BOOST_SYSTEM
307 IMP_ALGEBRA_HAS_CGAL = _IMP_pmi.IMP_ALGEBRA_HAS_CGAL
308 IMP_ALGEBRA_HAS_ANN = _IMP_pmi.IMP_ALGEBRA_HAS_ANN
309 IMPALGEBRA_SHOW_WARNINGS = _IMP_pmi.IMPALGEBRA_SHOW_WARNINGS
311 IMP_DISPLAY_HAS_IMP_CGAL = _IMP_pmi.IMP_DISPLAY_HAS_IMP_CGAL
312 IMP_DISPLAY_HAS_BOOST_FILESYSTEM = _IMP_pmi.IMP_DISPLAY_HAS_BOOST_FILESYSTEM
313 IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS = _IMP_pmi.IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS
314 IMP_DISPLAY_HAS_BOOST_RANDOM = _IMP_pmi.IMP_DISPLAY_HAS_BOOST_RANDOM
315 IMP_DISPLAY_HAS_BOOST_SYSTEM = _IMP_pmi.IMP_DISPLAY_HAS_BOOST_SYSTEM
316 IMP_DISPLAY_HAS_CGAL = _IMP_pmi.IMP_DISPLAY_HAS_CGAL
317 IMPDISPLAY_SHOW_WARNINGS = _IMP_pmi.IMPDISPLAY_SHOW_WARNINGS
319 IMP_SCORE_FUNCTOR_HAS_IMP_CGAL = _IMP_pmi.IMP_SCORE_FUNCTOR_HAS_IMP_CGAL
320 IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM = _IMP_pmi.IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM
321 IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS = _IMP_pmi.IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS
322 IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM = _IMP_pmi.IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM
323 IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM = _IMP_pmi.IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM
324 IMP_SCORE_FUNCTOR_HAS_CGAL = _IMP_pmi.IMP_SCORE_FUNCTOR_HAS_CGAL
325 IMP_SCORE_FUNCTOR_HAS_HDF5 = _IMP_pmi.IMP_SCORE_FUNCTOR_HAS_HDF5
326 IMPSCOREFUNCTOR_SHOW_WARNINGS = _IMP_pmi.IMPSCOREFUNCTOR_SHOW_WARNINGS
328 IMP_STATISTICS_HAS_IMP_CGAL = _IMP_pmi.IMP_STATISTICS_HAS_IMP_CGAL
329 IMP_STATISTICS_HAS_BOOST_FILESYSTEM = _IMP_pmi.IMP_STATISTICS_HAS_BOOST_FILESYSTEM
330 IMP_STATISTICS_HAS_BOOST_PROGRAMOPTIONS = _IMP_pmi.IMP_STATISTICS_HAS_BOOST_PROGRAMOPTIONS
331 IMP_STATISTICS_HAS_BOOST_RANDOM = _IMP_pmi.IMP_STATISTICS_HAS_BOOST_RANDOM
332 IMP_STATISTICS_HAS_BOOST_SYSTEM = _IMP_pmi.IMP_STATISTICS_HAS_BOOST_SYSTEM
333 IMP_STATISTICS_HAS_CGAL = _IMP_pmi.IMP_STATISTICS_HAS_CGAL
334 IMPSTATISTICS_SHOW_WARNINGS = _IMP_pmi.IMPSTATISTICS_SHOW_WARNINGS
336 IMP_CORE_HAS_IMP_CGAL = _IMP_pmi.IMP_CORE_HAS_IMP_CGAL
337 IMP_CORE_HAS_IMP_KERNEL = _IMP_pmi.IMP_CORE_HAS_IMP_KERNEL
338 IMP_CORE_HAS_BOOST_FILESYSTEM = _IMP_pmi.IMP_CORE_HAS_BOOST_FILESYSTEM
339 IMP_CORE_HAS_BOOST_PROGRAMOPTIONS = _IMP_pmi.IMP_CORE_HAS_BOOST_PROGRAMOPTIONS
340 IMP_CORE_HAS_BOOST_RANDOM = _IMP_pmi.IMP_CORE_HAS_BOOST_RANDOM
341 IMP_CORE_HAS_BOOST_SYSTEM = _IMP_pmi.IMP_CORE_HAS_BOOST_SYSTEM
342 IMP_CORE_HAS_CGAL = _IMP_pmi.IMP_CORE_HAS_CGAL
343 IMP_CORE_HAS_HDF5 = _IMP_pmi.IMP_CORE_HAS_HDF5
344 IMPCORE_SHOW_WARNINGS = _IMP_pmi.IMPCORE_SHOW_WARNINGS
346 IMP_CONTAINER_HAS_IMP_ALGEBRA = _IMP_pmi.IMP_CONTAINER_HAS_IMP_ALGEBRA
347 IMP_CONTAINER_HAS_IMP_CGAL = _IMP_pmi.IMP_CONTAINER_HAS_IMP_CGAL
348 IMP_CONTAINER_HAS_IMP_DISPLAY = _IMP_pmi.IMP_CONTAINER_HAS_IMP_DISPLAY
349 IMP_CONTAINER_HAS_IMP_KERNEL = _IMP_pmi.IMP_CONTAINER_HAS_IMP_KERNEL
350 IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR = _IMP_pmi.IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR
351 IMP_CONTAINER_HAS_BOOST_FILESYSTEM = _IMP_pmi.IMP_CONTAINER_HAS_BOOST_FILESYSTEM
352 IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS = _IMP_pmi.IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS
353 IMP_CONTAINER_HAS_BOOST_RANDOM = _IMP_pmi.IMP_CONTAINER_HAS_BOOST_RANDOM
354 IMP_CONTAINER_HAS_BOOST_SYSTEM = _IMP_pmi.IMP_CONTAINER_HAS_BOOST_SYSTEM
355 IMP_CONTAINER_HAS_CGAL = _IMP_pmi.IMP_CONTAINER_HAS_CGAL
356 IMP_CONTAINER_HAS_HDF5 = _IMP_pmi.IMP_CONTAINER_HAS_HDF5
357 IMP_CONTAINER_HAS_PYTHON_IHM = _IMP_pmi.IMP_CONTAINER_HAS_PYTHON_IHM
358 IMP_CONTAINER_HAS_GOOGLE_DENSE_HASH_MAP = _IMP_pmi.IMP_CONTAINER_HAS_GOOGLE_DENSE_HASH_MAP
359 IMP_CONTAINER_HAS_ROBIN_MAP = _IMP_pmi.IMP_CONTAINER_HAS_ROBIN_MAP
360 IMPCONTAINER_SHOW_WARNINGS = _IMP_pmi.IMPCONTAINER_SHOW_WARNINGS
362 IMP_ATOM_HAS_IMP_CGAL = _IMP_pmi.IMP_ATOM_HAS_IMP_CGAL
363 IMP_ATOM_HAS_IMP_KERNEL = _IMP_pmi.IMP_ATOM_HAS_IMP_KERNEL
364 IMP_ATOM_HAS_IMP_SCORE_FUNCTOR = _IMP_pmi.IMP_ATOM_HAS_IMP_SCORE_FUNCTOR
365 IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS = _IMP_pmi.IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS
366 IMP_ATOM_HAS_BOOST_RANDOM = _IMP_pmi.IMP_ATOM_HAS_BOOST_RANDOM
367 IMP_ATOM_HAS_BOOST_REGEX = _IMP_pmi.IMP_ATOM_HAS_BOOST_REGEX
368 IMP_ATOM_HAS_BOOST_SYSTEM = _IMP_pmi.IMP_ATOM_HAS_BOOST_SYSTEM
369 IMP_ATOM_HAS_CGAL = _IMP_pmi.IMP_ATOM_HAS_CGAL
370 IMP_ATOM_HAS_HDF5 = _IMP_pmi.IMP_ATOM_HAS_HDF5
371 IMP_ATOM_HAS_PYTHON_IHM = _IMP_pmi.IMP_ATOM_HAS_PYTHON_IHM
372 IMPATOM_SHOW_WARNINGS = _IMP_pmi.IMPATOM_SHOW_WARNINGS
373 IMP_ATOM_TYPE_INDEX = _IMP_pmi.IMP_ATOM_TYPE_INDEX
374 IMP_RESIDUE_TYPE_INDEX = _IMP_pmi.IMP_RESIDUE_TYPE_INDEX
375 IMP_HIERARCHY_TYPE_INDEX = _IMP_pmi.IMP_HIERARCHY_TYPE_INDEX
376 IMP_CHAIN_TYPE_INDEX = _IMP_pmi.IMP_CHAIN_TYPE_INDEX
378 IMP_EM_HAS_IMP_CGAL = _IMP_pmi.IMP_EM_HAS_IMP_CGAL
379 IMP_EM_HAS_IMP_CONTAINER = _IMP_pmi.IMP_EM_HAS_IMP_CONTAINER
380 IMP_EM_HAS_IMP_DISPLAY = _IMP_pmi.IMP_EM_HAS_IMP_DISPLAY
381 IMP_EM_HAS_IMP_SCORE_FUNCTOR = _IMP_pmi.IMP_EM_HAS_IMP_SCORE_FUNCTOR
382 IMP_EM_HAS_BOOST_FILESYSTEM = _IMP_pmi.IMP_EM_HAS_BOOST_FILESYSTEM
383 IMP_EM_HAS_BOOST_PROGRAMOPTIONS = _IMP_pmi.IMP_EM_HAS_BOOST_PROGRAMOPTIONS
384 IMP_EM_HAS_BOOST_RANDOM = _IMP_pmi.IMP_EM_HAS_BOOST_RANDOM
385 IMP_EM_HAS_BOOST_REGEX = _IMP_pmi.IMP_EM_HAS_BOOST_REGEX
386 IMP_EM_HAS_BOOST_SYSTEM = _IMP_pmi.IMP_EM_HAS_BOOST_SYSTEM
387 IMP_EM_HAS_CGAL = _IMP_pmi.IMP_EM_HAS_CGAL
388 IMP_EM_HAS_HDF5 = _IMP_pmi.IMP_EM_HAS_HDF5
389 IMP_EM_HAS_PYTHON_IHM = _IMP_pmi.IMP_EM_HAS_PYTHON_IHM
390 IMPEM_SHOW_WARNINGS = _IMP_pmi.IMPEM_SHOW_WARNINGS
392 IMP_SAXS_HAS_IMP_CGAL = _IMP_pmi.IMP_SAXS_HAS_IMP_CGAL
393 IMP_SAXS_HAS_IMP_CONTAINER = _IMP_pmi.IMP_SAXS_HAS_IMP_CONTAINER
394 IMP_SAXS_HAS_IMP_DISPLAY = _IMP_pmi.IMP_SAXS_HAS_IMP_DISPLAY
395 IMP_SAXS_HAS_IMP_KERNEL = _IMP_pmi.IMP_SAXS_HAS_IMP_KERNEL
396 IMP_SAXS_HAS_IMP_SCORE_FUNCTOR = _IMP_pmi.IMP_SAXS_HAS_IMP_SCORE_FUNCTOR
397 IMP_SAXS_HAS_BOOST_FILESYSTEM = _IMP_pmi.IMP_SAXS_HAS_BOOST_FILESYSTEM
398 IMP_SAXS_HAS_BOOST_PROGRAMOPTIONS = _IMP_pmi.IMP_SAXS_HAS_BOOST_PROGRAMOPTIONS
399 IMP_SAXS_HAS_BOOST_RANDOM = _IMP_pmi.IMP_SAXS_HAS_BOOST_RANDOM
400 IMP_SAXS_HAS_BOOST_REGEX = _IMP_pmi.IMP_SAXS_HAS_BOOST_REGEX
401 IMP_SAXS_HAS_BOOST_SYSTEM = _IMP_pmi.IMP_SAXS_HAS_BOOST_SYSTEM
402 IMP_SAXS_HAS_CGAL = _IMP_pmi.IMP_SAXS_HAS_CGAL
403 IMP_SAXS_HAS_HDF5 = _IMP_pmi.IMP_SAXS_HAS_HDF5
404 IMP_SAXS_HAS_PYTHON_IHM = _IMP_pmi.IMP_SAXS_HAS_PYTHON_IHM
405 IMPSAXS_SHOW_WARNINGS = _IMP_pmi.IMPSAXS_SHOW_WARNINGS
407 IMP_ISD_HAS_IMP_CGAL = _IMP_pmi.IMP_ISD_HAS_IMP_CGAL
408 IMP_ISD_HAS_IMP_DISPLAY = _IMP_pmi.IMP_ISD_HAS_IMP_DISPLAY
409 IMP_ISD_HAS_IMP_SCORE_FUNCTOR = _IMP_pmi.IMP_ISD_HAS_IMP_SCORE_FUNCTOR
410 IMP_ISD_HAS_BOOST_FILESYSTEM = _IMP_pmi.IMP_ISD_HAS_BOOST_FILESYSTEM
411 IMP_ISD_HAS_BOOST_PROGRAMOPTIONS = _IMP_pmi.IMP_ISD_HAS_BOOST_PROGRAMOPTIONS
412 IMP_ISD_HAS_BOOST_RANDOM = _IMP_pmi.IMP_ISD_HAS_BOOST_RANDOM
413 IMP_ISD_HAS_BOOST_REGEX = _IMP_pmi.IMP_ISD_HAS_BOOST_REGEX
414 IMP_ISD_HAS_BOOST_SYSTEM = _IMP_pmi.IMP_ISD_HAS_BOOST_SYSTEM
415 IMP_ISD_HAS_CGAL = _IMP_pmi.IMP_ISD_HAS_CGAL
416 IMP_ISD_HAS_HDF5 = _IMP_pmi.IMP_ISD_HAS_HDF5
417 IMP_ISD_HAS_PYTHON_IHM = _IMP_pmi.IMP_ISD_HAS_PYTHON_IHM
418 IMPISD_SHOW_WARNINGS = _IMP_pmi.IMPISD_SHOW_WARNINGS
420 IMP_PMI_HAS_IMP_ALGEBRA = _IMP_pmi.IMP_PMI_HAS_IMP_ALGEBRA
421 IMP_PMI_HAS_IMP_ATOM = _IMP_pmi.IMP_PMI_HAS_IMP_ATOM
422 IMP_PMI_HAS_IMP_CGAL = _IMP_pmi.IMP_PMI_HAS_IMP_CGAL
423 IMP_PMI_HAS_IMP_DISPLAY = _IMP_pmi.IMP_PMI_HAS_IMP_DISPLAY
424 IMP_PMI_HAS_IMP_EM = _IMP_pmi.IMP_PMI_HAS_IMP_EM
425 IMP_PMI_HAS_IMP_KERNEL = _IMP_pmi.IMP_PMI_HAS_IMP_KERNEL
426 IMP_PMI_HAS_IMP_SAXS = _IMP_pmi.IMP_PMI_HAS_IMP_SAXS
427 IMP_PMI_HAS_IMP_SCORE_FUNCTOR = _IMP_pmi.IMP_PMI_HAS_IMP_SCORE_FUNCTOR
428 IMP_PMI_HAS_IMP_STATISTICS = _IMP_pmi.IMP_PMI_HAS_IMP_STATISTICS
429 IMP_PMI_HAS_BOOST_FILESYSTEM = _IMP_pmi.IMP_PMI_HAS_BOOST_FILESYSTEM
430 IMP_PMI_HAS_BOOST_PROGRAMOPTIONS = _IMP_pmi.IMP_PMI_HAS_BOOST_PROGRAMOPTIONS
431 IMP_PMI_HAS_BOOST_RANDOM = _IMP_pmi.IMP_PMI_HAS_BOOST_RANDOM
432 IMP_PMI_HAS_BOOST_REGEX = _IMP_pmi.IMP_PMI_HAS_BOOST_REGEX
433 IMP_PMI_HAS_BOOST_SYSTEM = _IMP_pmi.IMP_PMI_HAS_BOOST_SYSTEM
434 IMP_PMI_HAS_CGAL = _IMP_pmi.IMP_PMI_HAS_CGAL
435 IMP_PMI_HAS_HDF5 = _IMP_pmi.IMP_PMI_HAS_HDF5
436 IMP_PMI_HAS_PYTHON_IHM = _IMP_pmi.IMP_PMI_HAS_PYTHON_IHM
437 IMPPMI_SHOW_WARNINGS = _IMP_pmi.IMPPMI_SHOW_WARNINGS
439 _object_types.append(
"CompositeRestraint")
442 def _object_cast_to_CompositeRestraint(o):
443 """_object_cast_to_CompositeRestraint(Object o) -> CompositeRestraint"""
444 return _IMP_pmi._object_cast_to_CompositeRestraint(o)
446 def Uncertainties(l=[]):
447 return [Uncertainty(x)
for x
in l]
448 _plural_types.append(
"Uncertainties")
451 _value_types.append(
"Uncertainty")
454 def Resolutions(l=[]):
455 return [Resolution(x)
for x
in l]
456 _plural_types.append(
"Resolutions")
459 _value_types.append(
"Resolution")
462 def Symmetrics(l=[]):
463 return [Symmetric(x)
for x
in l]
464 _plural_types.append(
"Symmetrics")
467 _value_types.append(
"Symmetric")
470 _object_types.append(
"SigmoidRestraintSphere")
473 def _object_cast_to_SigmoidRestraintSphere(o):
474 """_object_cast_to_SigmoidRestraintSphere(Object o) -> SigmoidRestraintSphere"""
475 return _IMP_pmi._object_cast_to_SigmoidRestraintSphere(o)
477 _object_types.append(
"TransformMover")
480 def _object_cast_to_TransformMover(o):
481 """_object_cast_to_TransformMover(Object o) -> TransformMover"""
482 return _IMP_pmi._object_cast_to_TransformMover(o)
484 _object_types.append(
"MembraneRestraint")
487 def _object_cast_to_MembraneRestraint(o):
488 """_object_cast_to_MembraneRestraint(Object o) -> MembraneRestraint"""
489 return _IMP_pmi._object_cast_to_MembraneRestraint(o)
491 _object_types.append(
"InternalCoordinatesConstraint")
494 def _object_cast_to_InternalCoordinatesConstraint(o):
495 """_object_cast_to_InternalCoordinatesConstraint(Object o) -> InternalCoordinatesConstraint"""
496 return _IMP_pmi._object_cast_to_InternalCoordinatesConstraint(o)
499 """Mark a PMI1 class as deprecated. Point to its replacement or IMP.pmi1"""
501 "This is a PMI1 class. New applications of PMI should use PMI2 "
502 "classes. In this case, %s. If you need to use PMI1 classes, "
503 "for example to maintain a published protocol, use the legacy "
504 "IMP.pmi1 module instead of IMP.pmi." % help_message)
507 """Proxy of C++ IMP::pmi::MembraneRestraint class."""
509 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
511 def __init__(self, m, z_nuisance, thickness, softness, plateau, linear):
512 """__init__(IMP::pmi::MembraneRestraint self, Model m, ParticleIndex z_nuisance, double thickness, double softness, double plateau, double linear) -> MembraneRestraint"""
513 this = _IMP_pmi.new_MembraneRestraint(m, z_nuisance, thickness, softness, plateau, linear)
515 self.this.append(this)
516 except __builtin__.Exception:
519 def add_particles_below(self, particles):
520 """add_particles_below(MembraneRestraint self, IMP::ParticleIndexes const & particles)"""
521 return _IMP_pmi.MembraneRestraint_add_particles_below(self, particles)
524 def add_particles_above(self, particles):
525 """add_particles_above(MembraneRestraint self, IMP::ParticleIndexes const & particles)"""
526 return _IMP_pmi.MembraneRestraint_add_particles_above(self, particles)
529 def add_particles_inside(self, particles):
530 """add_particles_inside(MembraneRestraint self, IMP::ParticleIndexes const & particles)"""
531 return _IMP_pmi.MembraneRestraint_add_particles_inside(self, particles)
534 def get_score(self, prob):
535 """get_score(MembraneRestraint self, double prob) -> double"""
536 return _IMP_pmi.MembraneRestraint_get_score(self, prob)
539 def get_probability_above(self, z, z_slope_center_upper):
540 """get_probability_above(MembraneRestraint self, double z, double z_slope_center_upper) -> double"""
541 return _IMP_pmi.MembraneRestraint_get_probability_above(self, z, z_slope_center_upper)
544 def get_score_above(self, z, z_slope_center_upper):
545 """get_score_above(MembraneRestraint self, double z, double z_slope_center_upper) -> double"""
546 return _IMP_pmi.MembraneRestraint_get_score_above(self, z, z_slope_center_upper)
549 def get_probability_below(self, z, z_slope_center_lower):
550 """get_probability_below(MembraneRestraint self, double z, double z_slope_center_lower) -> double"""
551 return _IMP_pmi.MembraneRestraint_get_probability_below(self, z, z_slope_center_lower)
554 def get_score_below(self, z, z_slope_center_lower):
555 """get_score_below(MembraneRestraint self, double z, double z_slope_center_lower) -> double"""
556 return _IMP_pmi.MembraneRestraint_get_score_below(self, z, z_slope_center_lower)
559 def get_score_inside(self, z, z_slope_center_lower, z_slope_center_upper):
560 """get_score_inside(MembraneRestraint self, double z, double z_slope_center_lower, double z_slope_center_upper) -> double"""
561 return _IMP_pmi.MembraneRestraint_get_score_inside(self, z, z_slope_center_lower, z_slope_center_upper)
565 """__str__(MembraneRestraint self) -> std::string"""
566 return _IMP_pmi.MembraneRestraint___str__(self)
570 """__repr__(MembraneRestraint self) -> std::string"""
571 return _IMP_pmi.MembraneRestraint___repr__(self)
576 return _object_cast_to_MembraneRestraint(o)
578 MembraneRestraint_swigregister = _IMP_pmi.MembraneRestraint_swigregister
579 MembraneRestraint_swigregister(MembraneRestraint)
582 """Proxy of C++ IMP::pmi::CompositeRestraint class."""
584 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
586 def __init__(self, *args):
588 __init__(IMP::pmi::CompositeRestraint self, Model m, _ParticleIndexesAdaptor handle_particle_indexes, double coffd, double l, bool tabprob, double plateau, std::string name) -> CompositeRestraint
589 __init__(IMP::pmi::CompositeRestraint self, Model m, _ParticleIndexesAdaptor handle_particle_indexes, double coffd, double l, bool tabprob, double plateau) -> CompositeRestraint
591 this = _IMP_pmi.new_CompositeRestraint(*args)
593 self.this.append(this)
594 except __builtin__.Exception:
597 def add_composite_particle(self, pi):
598 """add_composite_particle(CompositeRestraint self, _ParticleIndexesAdaptor pi)"""
599 return _IMP_pmi.CompositeRestraint_add_composite_particle(self, pi)
602 def get_number_of_elements(self):
603 """get_number_of_elements(CompositeRestraint self) -> unsigned int"""
604 return _IMP_pmi.CompositeRestraint_get_number_of_elements(self)
607 def do_get_inputs(self):
608 """do_get_inputs(CompositeRestraint self) -> IMP::ModelObjectsTemp"""
609 return _IMP_pmi.CompositeRestraint_do_get_inputs(self)
612 def get_version_info(self):
613 """get_version_info(CompositeRestraint self) -> VersionInfo"""
614 return _IMP_pmi.CompositeRestraint_get_version_info(self)
617 def get_probability(self):
618 """get_probability(CompositeRestraint self) -> double"""
619 return _IMP_pmi.CompositeRestraint_get_probability(self)
623 """__str__(CompositeRestraint self) -> std::string"""
624 return _IMP_pmi.CompositeRestraint___str__(self)
628 """__repr__(CompositeRestraint self) -> std::string"""
629 return _IMP_pmi.CompositeRestraint___repr__(self)
634 return _object_cast_to_CompositeRestraint(o)
636 CompositeRestraint_swigregister = _IMP_pmi.CompositeRestraint_swigregister
637 CompositeRestraint_swigregister(CompositeRestraint)
640 """Proxy of C++ IMP::pmi::Uncertainty class."""
642 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
644 def get_uncertainty(self):
645 """get_uncertainty(Uncertainty self) -> IMP::Float"""
646 return _IMP_pmi.Uncertainty_get_uncertainty(self)
649 def set_uncertainty(self, d):
650 """set_uncertainty(Uncertainty self, IMP::Float d)"""
651 return _IMP_pmi.Uncertainty_set_uncertainty(self, d)
654 def __init__(self, *args):
656 __init__(IMP::pmi::Uncertainty self) -> Uncertainty
657 __init__(IMP::pmi::Uncertainty self, Model m, ParticleIndex id) -> Uncertainty
658 __init__(IMP::pmi::Uncertainty self, _ParticleAdaptor d) -> Uncertainty
660 this = _IMP_pmi.new_Uncertainty(*args)
662 self.this.append(this)
663 except __builtin__.Exception:
666 def get_is_setup(*args):
668 get_is_setup(Model m, ParticleIndex pi) -> bool
669 get_is_setup(_ParticleAdaptor p) -> bool
671 return _IMP_pmi.Uncertainty_get_is_setup(*args)
673 get_is_setup = staticmethod(get_is_setup)
675 def show(self, *args):
677 show(Uncertainty self, _ostream out)
678 show(Uncertainty self)
680 return _IMP_pmi.Uncertainty_show(self, *args)
683 def setup_particle(*args):
685 setup_particle(Model m, ParticleIndex pi, IMP::Float uncertainty) -> Uncertainty
686 setup_particle(_ParticleAdaptor decorator, IMP::Float uncertainty) -> Uncertainty
688 return _IMP_pmi.Uncertainty_setup_particle(*args)
690 setup_particle = staticmethod(setup_particle)
692 def get_uncertainty_key():
693 """get_uncertainty_key() -> FloatKey"""
694 return _IMP_pmi.Uncertainty_get_uncertainty_key()
696 get_uncertainty_key = staticmethod(get_uncertainty_key)
698 def add_attribute(self, *args):
700 add_attribute(Uncertainty self, FloatKey k, IMP::Float v, bool opt)
701 add_attribute(Uncertainty self, FloatKey a0, IMP::Float a1)
702 add_attribute(Uncertainty self, IntKey a0, IMP::Int a1)
703 add_attribute(Uncertainty self, StringKey a0, IMP::String a1)
704 add_attribute(Uncertainty self, ParticleIndexKey a0, Particle a1)
705 add_attribute(Uncertainty self, ObjectKey a0, Object a1)
707 return _IMP_pmi.Uncertainty_add_attribute(self, *args)
710 def get_value(self, *args):
712 get_value(Uncertainty self, FloatKey a0) -> IMP::Float
713 get_value(Uncertainty self, IntKey a0) -> IMP::Int
714 get_value(Uncertainty self, StringKey a0) -> IMP::String
715 get_value(Uncertainty self, ParticleIndexKey a0) -> Particle
716 get_value(Uncertainty self, ObjectKey a0) -> Object
718 return _IMP_pmi.Uncertainty_get_value(self, *args)
721 def set_value(self, *args):
723 set_value(Uncertainty self, FloatKey a0, IMP::Float a1)
724 set_value(Uncertainty self, IntKey a0, IMP::Int a1)
725 set_value(Uncertainty self, StringKey a0, IMP::String a1)
726 set_value(Uncertainty self, ParticleIndexKey a0, Particle a1)
727 set_value(Uncertainty self, ObjectKey a0, Object a1)
729 return _IMP_pmi.Uncertainty_set_value(self, *args)
732 def remove_attribute(self, *args):
734 remove_attribute(Uncertainty self, FloatKey a0)
735 remove_attribute(Uncertainty self, IntKey a0)
736 remove_attribute(Uncertainty self, StringKey a0)
737 remove_attribute(Uncertainty self, ParticleIndexKey a0)
738 remove_attribute(Uncertainty self, ObjectKey a0)
740 return _IMP_pmi.Uncertainty_remove_attribute(self, *args)
743 def has_attribute(self, *args):
745 has_attribute(Uncertainty self, FloatKey a0) -> bool
746 has_attribute(Uncertainty self, IntKey a0) -> bool
747 has_attribute(Uncertainty self, StringKey a0) -> bool
748 has_attribute(Uncertainty self, ParticleIndexKey a0) -> bool
749 has_attribute(Uncertainty self, ObjectKey a0) -> bool
751 return _IMP_pmi.Uncertainty_has_attribute(self, *args)
754 def get_derivative(self, a0):
755 """get_derivative(Uncertainty self, FloatKey a0) -> double"""
756 return _IMP_pmi.Uncertainty_get_derivative(self, a0)
760 """get_name(Uncertainty self) -> std::string"""
761 return _IMP_pmi.Uncertainty_get_name(self)
764 def clear_caches(self):
765 """clear_caches(Uncertainty self)"""
766 return _IMP_pmi.Uncertainty_clear_caches(self)
769 def set_name(self, a0):
770 """set_name(Uncertainty self, std::string a0)"""
771 return _IMP_pmi.Uncertainty_set_name(self, a0)
775 """set_check_level(Uncertainty self, IMP::CheckLevel a0)"""
776 return _IMP_pmi.Uncertainty_set_check_level(self, a0)
779 def add_to_derivative(self, a0, a1, a2):
780 """add_to_derivative(Uncertainty self, FloatKey a0, double a1, DerivativeAccumulator a2)"""
781 return _IMP_pmi.Uncertainty_add_to_derivative(self, a0, a1, a2)
784 def set_is_optimized(self, a0, a1):
785 """set_is_optimized(Uncertainty self, FloatKey a0, bool a1)"""
786 return _IMP_pmi.Uncertainty_set_is_optimized(self, a0, a1)
789 def get_is_optimized(self, a0):
790 """get_is_optimized(Uncertainty self, FloatKey a0) -> bool"""
791 return _IMP_pmi.Uncertainty_get_is_optimized(self, a0)
795 """get_check_level(Uncertainty self) -> IMP::CheckLevel"""
796 return _IMP_pmi.Uncertainty_get_check_level(self)
799 def __eq__(self, *args):
801 __eq__(Uncertainty self, Uncertainty o) -> bool
802 __eq__(Uncertainty self, Particle d) -> bool
804 return _IMP_pmi.Uncertainty___eq__(self, *args)
807 def __ne__(self, *args):
809 __ne__(Uncertainty self, Uncertainty o) -> bool
810 __ne__(Uncertainty self, Particle d) -> bool
812 return _IMP_pmi.Uncertainty___ne__(self, *args)
815 def __le__(self, *args):
817 __le__(Uncertainty self, Uncertainty o) -> bool
818 __le__(Uncertainty self, Particle d) -> bool
820 return _IMP_pmi.Uncertainty___le__(self, *args)
823 def __lt__(self, *args):
825 __lt__(Uncertainty self, Uncertainty o) -> bool
826 __lt__(Uncertainty self, Particle d) -> bool
828 return _IMP_pmi.Uncertainty___lt__(self, *args)
831 def __ge__(self, *args):
833 __ge__(Uncertainty self, Uncertainty o) -> bool
834 __ge__(Uncertainty self, Particle d) -> bool
836 return _IMP_pmi.Uncertainty___ge__(self, *args)
839 def __gt__(self, *args):
841 __gt__(Uncertainty self, Uncertainty o) -> bool
842 __gt__(Uncertainty self, Particle d) -> bool
844 return _IMP_pmi.Uncertainty___gt__(self, *args)
848 """__hash__(Uncertainty self) -> std::size_t"""
849 return _IMP_pmi.Uncertainty___hash__(self)
853 """__str__(Uncertainty self) -> std::string"""
854 return _IMP_pmi.Uncertainty___str__(self)
858 """__repr__(Uncertainty self) -> std::string"""
859 return _IMP_pmi.Uncertainty___repr__(self)
861 __swig_destroy__ = _IMP_pmi.delete_Uncertainty
862 __del__ =
lambda self:
None
863 Uncertainty_swigregister = _IMP_pmi.Uncertainty_swigregister
864 Uncertainty_swigregister(Uncertainty)
866 def Uncertainty_get_is_setup(*args):
868 get_is_setup(Model m, ParticleIndex pi) -> bool
869 Uncertainty_get_is_setup(_ParticleAdaptor p) -> bool
871 return _IMP_pmi.Uncertainty_get_is_setup(*args)
873 def Uncertainty_setup_particle(*args):
875 setup_particle(Model m, ParticleIndex pi, IMP::Float uncertainty) -> Uncertainty
876 Uncertainty_setup_particle(_ParticleAdaptor decorator, IMP::Float uncertainty) -> Uncertainty
878 return _IMP_pmi.Uncertainty_setup_particle(*args)
880 def Uncertainty_get_uncertainty_key():
881 """Uncertainty_get_uncertainty_key() -> FloatKey"""
882 return _IMP_pmi.Uncertainty_get_uncertainty_key()
885 """Proxy of C++ IMP::pmi::Resolution class."""
887 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
890 """get_resolution(Resolution self) -> IMP::Float"""
891 return _IMP_pmi.Resolution_get_resolution(self)
894 def set_resolution(self, d):
895 """set_resolution(Resolution self, IMP::Float d)"""
896 return _IMP_pmi.Resolution_set_resolution(self, d)
899 def __init__(self, *args):
901 __init__(IMP::pmi::Resolution self) -> Resolution
902 __init__(IMP::pmi::Resolution self, Model m, ParticleIndex id) -> Resolution
903 __init__(IMP::pmi::Resolution self, _ParticleAdaptor d) -> Resolution
905 this = _IMP_pmi.new_Resolution(*args)
907 self.this.append(this)
908 except __builtin__.Exception:
911 def get_is_setup(*args):
913 get_is_setup(Model m, ParticleIndex pi) -> bool
914 get_is_setup(_ParticleAdaptor p) -> bool
916 return _IMP_pmi.Resolution_get_is_setup(*args)
918 get_is_setup = staticmethod(get_is_setup)
920 def show(self, *args):
922 show(Resolution self, _ostream out)
923 show(Resolution self)
925 return _IMP_pmi.Resolution_show(self, *args)
928 def setup_particle(*args):
930 setup_particle(Model m, ParticleIndex pi, IMP::Float resolution) -> Resolution
931 setup_particle(_ParticleAdaptor decorator, IMP::Float resolution) -> Resolution
933 return _IMP_pmi.Resolution_setup_particle(*args)
935 setup_particle = staticmethod(setup_particle)
937 def get_resolution_key():
938 """get_resolution_key() -> FloatKey"""
939 return _IMP_pmi.Resolution_get_resolution_key()
941 get_resolution_key = staticmethod(get_resolution_key)
943 def add_attribute(self, *args):
945 add_attribute(Resolution self, FloatKey k, IMP::Float v, bool opt)
946 add_attribute(Resolution self, FloatKey a0, IMP::Float a1)
947 add_attribute(Resolution self, IntKey a0, IMP::Int a1)
948 add_attribute(Resolution self, StringKey a0, IMP::String a1)
949 add_attribute(Resolution self, ParticleIndexKey a0, Particle a1)
950 add_attribute(Resolution self, ObjectKey a0, Object a1)
952 return _IMP_pmi.Resolution_add_attribute(self, *args)
955 def get_value(self, *args):
957 get_value(Resolution self, FloatKey a0) -> IMP::Float
958 get_value(Resolution self, IntKey a0) -> IMP::Int
959 get_value(Resolution self, StringKey a0) -> IMP::String
960 get_value(Resolution self, ParticleIndexKey a0) -> Particle
961 get_value(Resolution self, ObjectKey a0) -> Object
963 return _IMP_pmi.Resolution_get_value(self, *args)
966 def set_value(self, *args):
968 set_value(Resolution self, FloatKey a0, IMP::Float a1)
969 set_value(Resolution self, IntKey a0, IMP::Int a1)
970 set_value(Resolution self, StringKey a0, IMP::String a1)
971 set_value(Resolution self, ParticleIndexKey a0, Particle a1)
972 set_value(Resolution self, ObjectKey a0, Object a1)
974 return _IMP_pmi.Resolution_set_value(self, *args)
977 def remove_attribute(self, *args):
979 remove_attribute(Resolution self, FloatKey a0)
980 remove_attribute(Resolution self, IntKey a0)
981 remove_attribute(Resolution self, StringKey a0)
982 remove_attribute(Resolution self, ParticleIndexKey a0)
983 remove_attribute(Resolution self, ObjectKey a0)
985 return _IMP_pmi.Resolution_remove_attribute(self, *args)
988 def has_attribute(self, *args):
990 has_attribute(Resolution self, FloatKey a0) -> bool
991 has_attribute(Resolution self, IntKey a0) -> bool
992 has_attribute(Resolution self, StringKey a0) -> bool
993 has_attribute(Resolution self, ParticleIndexKey a0) -> bool
994 has_attribute(Resolution self, ObjectKey a0) -> bool
996 return _IMP_pmi.Resolution_has_attribute(self, *args)
999 def get_derivative(self, a0):
1000 """get_derivative(Resolution self, FloatKey a0) -> double"""
1001 return _IMP_pmi.Resolution_get_derivative(self, a0)
1005 """get_name(Resolution self) -> std::string"""
1006 return _IMP_pmi.Resolution_get_name(self)
1009 def clear_caches(self):
1010 """clear_caches(Resolution self)"""
1011 return _IMP_pmi.Resolution_clear_caches(self)
1014 def set_name(self, a0):
1015 """set_name(Resolution self, std::string a0)"""
1016 return _IMP_pmi.Resolution_set_name(self, a0)
1020 """set_check_level(Resolution self, IMP::CheckLevel a0)"""
1021 return _IMP_pmi.Resolution_set_check_level(self, a0)
1024 def add_to_derivative(self, a0, a1, a2):
1025 """add_to_derivative(Resolution self, FloatKey a0, double a1, DerivativeAccumulator a2)"""
1026 return _IMP_pmi.Resolution_add_to_derivative(self, a0, a1, a2)
1029 def set_is_optimized(self, a0, a1):
1030 """set_is_optimized(Resolution self, FloatKey a0, bool a1)"""
1031 return _IMP_pmi.Resolution_set_is_optimized(self, a0, a1)
1034 def get_is_optimized(self, a0):
1035 """get_is_optimized(Resolution self, FloatKey a0) -> bool"""
1036 return _IMP_pmi.Resolution_get_is_optimized(self, a0)
1040 """get_check_level(Resolution self) -> IMP::CheckLevel"""
1041 return _IMP_pmi.Resolution_get_check_level(self)
1044 def __eq__(self, *args):
1046 __eq__(Resolution self, Resolution o) -> bool
1047 __eq__(Resolution self, Particle d) -> bool
1049 return _IMP_pmi.Resolution___eq__(self, *args)
1052 def __ne__(self, *args):
1054 __ne__(Resolution self, Resolution o) -> bool
1055 __ne__(Resolution self, Particle d) -> bool
1057 return _IMP_pmi.Resolution___ne__(self, *args)
1060 def __le__(self, *args):
1062 __le__(Resolution self, Resolution o) -> bool
1063 __le__(Resolution self, Particle d) -> bool
1065 return _IMP_pmi.Resolution___le__(self, *args)
1068 def __lt__(self, *args):
1070 __lt__(Resolution self, Resolution o) -> bool
1071 __lt__(Resolution self, Particle d) -> bool
1073 return _IMP_pmi.Resolution___lt__(self, *args)
1076 def __ge__(self, *args):
1078 __ge__(Resolution self, Resolution o) -> bool
1079 __ge__(Resolution self, Particle d) -> bool
1081 return _IMP_pmi.Resolution___ge__(self, *args)
1084 def __gt__(self, *args):
1086 __gt__(Resolution self, Resolution o) -> bool
1087 __gt__(Resolution self, Particle d) -> bool
1089 return _IMP_pmi.Resolution___gt__(self, *args)
1093 """__hash__(Resolution self) -> std::size_t"""
1094 return _IMP_pmi.Resolution___hash__(self)
1098 """__str__(Resolution self) -> std::string"""
1099 return _IMP_pmi.Resolution___str__(self)
1103 """__repr__(Resolution self) -> std::string"""
1104 return _IMP_pmi.Resolution___repr__(self)
1106 __swig_destroy__ = _IMP_pmi.delete_Resolution
1107 __del__ =
lambda self:
None
1108 Resolution_swigregister = _IMP_pmi.Resolution_swigregister
1109 Resolution_swigregister(Resolution)
1111 def Resolution_get_is_setup(*args):
1113 get_is_setup(Model m, ParticleIndex pi) -> bool
1114 Resolution_get_is_setup(_ParticleAdaptor p) -> bool
1116 return _IMP_pmi.Resolution_get_is_setup(*args)
1118 def Resolution_setup_particle(*args):
1120 setup_particle(Model m, ParticleIndex pi, IMP::Float resolution) -> Resolution
1121 Resolution_setup_particle(_ParticleAdaptor decorator, IMP::Float resolution) -> Resolution
1123 return _IMP_pmi.Resolution_setup_particle(*args)
1125 def Resolution_get_resolution_key():
1126 """Resolution_get_resolution_key() -> FloatKey"""
1127 return _IMP_pmi.Resolution_get_resolution_key()
1130 """Proxy of C++ IMP::pmi::Symmetric class."""
1132 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
1134 def get_symmetric(self):
1135 """get_symmetric(Symmetric self) -> IMP::Float"""
1136 return _IMP_pmi.Symmetric_get_symmetric(self)
1139 def set_symmetric(self, d):
1140 """set_symmetric(Symmetric self, IMP::Float d)"""
1141 return _IMP_pmi.Symmetric_set_symmetric(self, d)
1144 def __init__(self, *args):
1146 __init__(IMP::pmi::Symmetric self) -> Symmetric
1147 __init__(IMP::pmi::Symmetric self, Model m, ParticleIndex id) -> Symmetric
1148 __init__(IMP::pmi::Symmetric self, _ParticleAdaptor d) -> Symmetric
1150 this = _IMP_pmi.new_Symmetric(*args)
1152 self.this.append(this)
1153 except __builtin__.Exception:
1156 def get_is_setup(*args):
1158 get_is_setup(Model m, ParticleIndex pi) -> bool
1159 get_is_setup(_ParticleAdaptor p) -> bool
1161 return _IMP_pmi.Symmetric_get_is_setup(*args)
1163 get_is_setup = staticmethod(get_is_setup)
1165 def show(self, *args):
1167 show(Symmetric self, _ostream out)
1168 show(Symmetric self)
1170 return _IMP_pmi.Symmetric_show(self, *args)
1173 def setup_particle(*args):
1175 setup_particle(Model m, ParticleIndex pi, IMP::Float symmetric) -> Symmetric
1176 setup_particle(_ParticleAdaptor decorator, IMP::Float symmetric) -> Symmetric
1178 return _IMP_pmi.Symmetric_setup_particle(*args)
1180 setup_particle = staticmethod(setup_particle)
1182 def get_symmetric_key():
1183 """get_symmetric_key() -> FloatKey"""
1184 return _IMP_pmi.Symmetric_get_symmetric_key()
1186 get_symmetric_key = staticmethod(get_symmetric_key)
1188 def add_attribute(self, *args):
1190 add_attribute(Symmetric self, FloatKey k, IMP::Float v, bool opt)
1191 add_attribute(Symmetric self, FloatKey a0, IMP::Float a1)
1192 add_attribute(Symmetric self, IntKey a0, IMP::Int a1)
1193 add_attribute(Symmetric self, StringKey a0, IMP::String a1)
1194 add_attribute(Symmetric self, ParticleIndexKey a0, Particle a1)
1195 add_attribute(Symmetric self, ObjectKey a0, Object a1)
1197 return _IMP_pmi.Symmetric_add_attribute(self, *args)
1200 def get_value(self, *args):
1202 get_value(Symmetric self, FloatKey a0) -> IMP::Float
1203 get_value(Symmetric self, IntKey a0) -> IMP::Int
1204 get_value(Symmetric self, StringKey a0) -> IMP::String
1205 get_value(Symmetric self, ParticleIndexKey a0) -> Particle
1206 get_value(Symmetric self, ObjectKey a0) -> Object
1208 return _IMP_pmi.Symmetric_get_value(self, *args)
1211 def set_value(self, *args):
1213 set_value(Symmetric self, FloatKey a0, IMP::Float a1)
1214 set_value(Symmetric self, IntKey a0, IMP::Int a1)
1215 set_value(Symmetric self, StringKey a0, IMP::String a1)
1216 set_value(Symmetric self, ParticleIndexKey a0, Particle a1)
1217 set_value(Symmetric self, ObjectKey a0, Object a1)
1219 return _IMP_pmi.Symmetric_set_value(self, *args)
1222 def remove_attribute(self, *args):
1224 remove_attribute(Symmetric self, FloatKey a0)
1225 remove_attribute(Symmetric self, IntKey a0)
1226 remove_attribute(Symmetric self, StringKey a0)
1227 remove_attribute(Symmetric self, ParticleIndexKey a0)
1228 remove_attribute(Symmetric self, ObjectKey a0)
1230 return _IMP_pmi.Symmetric_remove_attribute(self, *args)
1233 def has_attribute(self, *args):
1235 has_attribute(Symmetric self, FloatKey a0) -> bool
1236 has_attribute(Symmetric self, IntKey a0) -> bool
1237 has_attribute(Symmetric self, StringKey a0) -> bool
1238 has_attribute(Symmetric self, ParticleIndexKey a0) -> bool
1239 has_attribute(Symmetric self, ObjectKey a0) -> bool
1241 return _IMP_pmi.Symmetric_has_attribute(self, *args)
1244 def get_derivative(self, a0):
1245 """get_derivative(Symmetric self, FloatKey a0) -> double"""
1246 return _IMP_pmi.Symmetric_get_derivative(self, a0)
1250 """get_name(Symmetric self) -> std::string"""
1251 return _IMP_pmi.Symmetric_get_name(self)
1254 def clear_caches(self):
1255 """clear_caches(Symmetric self)"""
1256 return _IMP_pmi.Symmetric_clear_caches(self)
1259 def set_name(self, a0):
1260 """set_name(Symmetric self, std::string a0)"""
1261 return _IMP_pmi.Symmetric_set_name(self, a0)
1265 """set_check_level(Symmetric self, IMP::CheckLevel a0)"""
1266 return _IMP_pmi.Symmetric_set_check_level(self, a0)
1269 def add_to_derivative(self, a0, a1, a2):
1270 """add_to_derivative(Symmetric self, FloatKey a0, double a1, DerivativeAccumulator a2)"""
1271 return _IMP_pmi.Symmetric_add_to_derivative(self, a0, a1, a2)
1274 def set_is_optimized(self, a0, a1):
1275 """set_is_optimized(Symmetric self, FloatKey a0, bool a1)"""
1276 return _IMP_pmi.Symmetric_set_is_optimized(self, a0, a1)
1279 def get_is_optimized(self, a0):
1280 """get_is_optimized(Symmetric self, FloatKey a0) -> bool"""
1281 return _IMP_pmi.Symmetric_get_is_optimized(self, a0)
1285 """get_check_level(Symmetric self) -> IMP::CheckLevel"""
1286 return _IMP_pmi.Symmetric_get_check_level(self)
1289 def __eq__(self, *args):
1291 __eq__(Symmetric self, Symmetric o) -> bool
1292 __eq__(Symmetric self, Particle d) -> bool
1294 return _IMP_pmi.Symmetric___eq__(self, *args)
1297 def __ne__(self, *args):
1299 __ne__(Symmetric self, Symmetric o) -> bool
1300 __ne__(Symmetric self, Particle d) -> bool
1302 return _IMP_pmi.Symmetric___ne__(self, *args)
1305 def __le__(self, *args):
1307 __le__(Symmetric self, Symmetric o) -> bool
1308 __le__(Symmetric self, Particle d) -> bool
1310 return _IMP_pmi.Symmetric___le__(self, *args)
1313 def __lt__(self, *args):
1315 __lt__(Symmetric self, Symmetric o) -> bool
1316 __lt__(Symmetric self, Particle d) -> bool
1318 return _IMP_pmi.Symmetric___lt__(self, *args)
1321 def __ge__(self, *args):
1323 __ge__(Symmetric self, Symmetric o) -> bool
1324 __ge__(Symmetric self, Particle d) -> bool
1326 return _IMP_pmi.Symmetric___ge__(self, *args)
1329 def __gt__(self, *args):
1331 __gt__(Symmetric self, Symmetric o) -> bool
1332 __gt__(Symmetric self, Particle d) -> bool
1334 return _IMP_pmi.Symmetric___gt__(self, *args)
1338 """__hash__(Symmetric self) -> std::size_t"""
1339 return _IMP_pmi.Symmetric___hash__(self)
1343 """__str__(Symmetric self) -> std::string"""
1344 return _IMP_pmi.Symmetric___str__(self)
1348 """__repr__(Symmetric self) -> std::string"""
1349 return _IMP_pmi.Symmetric___repr__(self)
1351 __swig_destroy__ = _IMP_pmi.delete_Symmetric
1352 __del__ =
lambda self:
None
1353 Symmetric_swigregister = _IMP_pmi.Symmetric_swigregister
1354 Symmetric_swigregister(Symmetric)
1356 def Symmetric_get_is_setup(*args):
1358 get_is_setup(Model m, ParticleIndex pi) -> bool
1359 Symmetric_get_is_setup(_ParticleAdaptor p) -> bool
1361 return _IMP_pmi.Symmetric_get_is_setup(*args)
1363 def Symmetric_setup_particle(*args):
1365 setup_particle(Model m, ParticleIndex pi, IMP::Float symmetric) -> Symmetric
1366 Symmetric_setup_particle(_ParticleAdaptor decorator, IMP::Float symmetric) -> Symmetric
1368 return _IMP_pmi.Symmetric_setup_particle(*args)
1370 def Symmetric_get_symmetric_key():
1371 """Symmetric_get_symmetric_key() -> FloatKey"""
1372 return _IMP_pmi.Symmetric_get_symmetric_key()
1375 """Proxy of C++ IMP::pmi::SigmoidRestraintSphere class."""
1377 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
1379 def __init__(self, *args):
1381 __init__(IMP::pmi::SigmoidRestraintSphere self, Model m, _ParticleIndexAdaptor p1, _ParticleIndexAdaptor p2, double inflection, double slope, double amplitude, double line_slope_=0, std::string name) -> SigmoidRestraintSphere
1382 __init__(IMP::pmi::SigmoidRestraintSphere self, Model m, _ParticleIndexAdaptor p1, _ParticleIndexAdaptor p2, double inflection, double slope, double amplitude, double line_slope_=0) -> SigmoidRestraintSphere
1383 __init__(IMP::pmi::SigmoidRestraintSphere self, Model m, _ParticleIndexAdaptor p1, _ParticleIndexAdaptor p2, double inflection, double slope, double amplitude) -> SigmoidRestraintSphere
1385 this = _IMP_pmi.new_SigmoidRestraintSphere(*args)
1387 self.this.append(this)
1388 except __builtin__.Exception:
1391 def set_amplitude(self, amplitude):
1392 """set_amplitude(SigmoidRestraintSphere self, double amplitude)"""
1393 return _IMP_pmi.SigmoidRestraintSphere_set_amplitude(self, amplitude)
1396 def increment_amplitude(self, amplitude):
1397 """increment_amplitude(SigmoidRestraintSphere self, double amplitude)"""
1398 return _IMP_pmi.SigmoidRestraintSphere_increment_amplitude(self, amplitude)
1401 def get_amplitude(self):
1402 """get_amplitude(SigmoidRestraintSphere self) -> double"""
1403 return _IMP_pmi.SigmoidRestraintSphere_get_amplitude(self)
1406 def do_get_inputs(self):
1407 """do_get_inputs(SigmoidRestraintSphere self) -> IMP::ModelObjectsTemp"""
1408 return _IMP_pmi.SigmoidRestraintSphere_do_get_inputs(self)
1411 def get_version_info(self):
1412 """get_version_info(SigmoidRestraintSphere self) -> VersionInfo"""
1413 return _IMP_pmi.SigmoidRestraintSphere_get_version_info(self)
1417 """__str__(SigmoidRestraintSphere self) -> std::string"""
1418 return _IMP_pmi.SigmoidRestraintSphere___str__(self)
1422 """__repr__(SigmoidRestraintSphere self) -> std::string"""
1423 return _IMP_pmi.SigmoidRestraintSphere___repr__(self)
1428 return _object_cast_to_SigmoidRestraintSphere(o)
1430 SigmoidRestraintSphere_swigregister = _IMP_pmi.SigmoidRestraintSphere_swigregister
1431 SigmoidRestraintSphere_swigregister(SigmoidRestraintSphere)
1434 """Proxy of C++ IMP::pmi::TransformMover class."""
1436 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
1438 def __init__(self, *args):
1440 __init__(IMP::pmi::TransformMover self, Model m, IMP::Float max_translation, IMP::Float max_rotation) -> TransformMover
1441 __init__(IMP::pmi::TransformMover self, Model m, Vector3D axis, IMP::Float max_translation, IMP::Float max_rotation) -> TransformMover
1442 __init__(IMP::pmi::TransformMover self, Model m, _ParticleIndexAdaptor p1i, _ParticleIndexAdaptor p2i, IMP::Float max_translation, IMP::Float max_rotation) -> TransformMover
1444 this = _IMP_pmi.new_TransformMover(*args)
1446 self.this.append(this)
1447 except __builtin__.Exception:
1450 def add_xyz_particle(self, pi):
1451 """add_xyz_particle(TransformMover self, _ParticleIndexAdaptor pi)"""
1452 return _IMP_pmi.TransformMover_add_xyz_particle(self, pi)
1455 def add_rigid_body_particle(self, pi):
1456 """add_rigid_body_particle(TransformMover self, _ParticleIndexAdaptor pi)"""
1457 return _IMP_pmi.TransformMover_add_rigid_body_particle(self, pi)
1460 def set_maximum_translation(self, mt):
1461 """set_maximum_translation(TransformMover self, IMP::Float mt)"""
1462 return _IMP_pmi.TransformMover_set_maximum_translation(self, mt)
1465 def set_maximum_rotation(self, mr):
1466 """set_maximum_rotation(TransformMover self, IMP::Float mr)"""
1467 return _IMP_pmi.TransformMover_set_maximum_rotation(self, mr)
1470 def get_maximum_translation(self):
1471 """get_maximum_translation(TransformMover self) -> IMP::Float"""
1472 return _IMP_pmi.TransformMover_get_maximum_translation(self)
1475 def get_maximum_rotation(self):
1476 """get_maximum_rotation(TransformMover self) -> IMP::Float"""
1477 return _IMP_pmi.TransformMover_get_maximum_rotation(self)
1480 def get_last_transformation(self):
1481 """get_last_transformation(TransformMover self) -> Transformation3D"""
1482 return _IMP_pmi.TransformMover_get_last_transformation(self)
1485 def get_version_info(self):
1486 """get_version_info(TransformMover self) -> VersionInfo"""
1487 return _IMP_pmi.TransformMover_get_version_info(self)
1491 """__str__(TransformMover self) -> std::string"""
1492 return _IMP_pmi.TransformMover___str__(self)
1496 """__repr__(TransformMover self) -> std::string"""
1497 return _IMP_pmi.TransformMover___repr__(self)
1502 return _object_cast_to_TransformMover(o)
1504 TransformMover_swigregister = _IMP_pmi.TransformMover_swigregister
1505 TransformMover_swigregister(TransformMover)
1509 """create_elastic_network(IMP::Particles const & ps, IMP::Float dist_cutoff, IMP::Float strength) -> RestraintSet"""
1510 return _IMP_pmi.create_elastic_network(ps, dist_cutoff, strength)
1512 def get_dihedral_angle(p1, p2, p3, p4):
1513 """get_dihedral_angle(Atom p1, Atom p2, Atom p3, Atom p4) -> IMP::Float"""
1514 return _IMP_pmi.get_dihedral_angle(p1, p2, p3, p4)
1516 def get_bipartite_minimum_sphere_distance(m1, m2):
1517 """get_bipartite_minimum_sphere_distance(IMP::core::XYZRs const & m1, IMP::core::XYZRs const & m2) -> IMP::Float"""
1518 return _IMP_pmi.get_bipartite_minimum_sphere_distance(m1, m2)
1520 def get_list_of_bipartite_minimum_sphere_distance(pss):
1521 """get_list_of_bipartite_minimum_sphere_distance(IMP::ParticlesTemps const & pss) -> IMP::Floats"""
1522 return _IMP_pmi.get_list_of_bipartite_minimum_sphere_distance(pss)
1525 """get_molecule_name_and_copy(Hierarchy h) -> std::string"""
1526 return _IMP_pmi.get_molecule_name_and_copy(h)
1529 """get_is_canonical(Hierarchy h) -> bool"""
1530 return _IMP_pmi.get_is_canonical(h)
1532 """Proxy of C++ IMP::pmi::InternalCoordinatesConstraint class."""
1534 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
1537 """__init__(IMP::pmi::InternalCoordinatesConstraint self) -> InternalCoordinatesConstraint"""
1538 this = _IMP_pmi.new_InternalCoordinatesConstraint()
1540 self.this.append(this)
1541 except __builtin__.Exception:
1544 def do_get_inputs(self, m, pis):
1545 """do_get_inputs(InternalCoordinatesConstraint self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
1546 return _IMP_pmi.InternalCoordinatesConstraint_do_get_inputs(self, m, pis)
1549 def do_get_outputs(self, m, pis):
1550 """do_get_outputs(InternalCoordinatesConstraint self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
1551 return _IMP_pmi.InternalCoordinatesConstraint_do_get_outputs(self, m, pis)
1554 def get_version_info(self):
1555 """get_version_info(InternalCoordinatesConstraint self) -> VersionInfo"""
1556 return _IMP_pmi.InternalCoordinatesConstraint_get_version_info(self)
1560 """__str__(InternalCoordinatesConstraint self) -> std::string"""
1561 return _IMP_pmi.InternalCoordinatesConstraint___str__(self)
1565 """__repr__(InternalCoordinatesConstraint self) -> std::string"""
1566 return _IMP_pmi.InternalCoordinatesConstraint___repr__(self)
1571 return _object_cast_to_InternalCoordinatesConstraint(o)
1573 InternalCoordinatesConstraint_swigregister = _IMP_pmi.InternalCoordinatesConstraint_swigregister
1574 InternalCoordinatesConstraint_swigregister(InternalCoordinatesConstraint)
1577 def get_module_version():
1578 """get_module_version() -> std::string const"""
1579 return _IMP_pmi.get_module_version()
1582 """get_example_path(std::string fname) -> std::string"""
1583 return _IMP_pmi.get_example_path(fname)
1586 """get_data_path(std::string fname) -> std::string"""
1587 return _IMP_pmi.get_data_path(fname)
1589 from .
import _version_check
1590 _version_check.check_version(get_module_version())
1591 __version__ = get_module_version()
A base class for modifiers of ParticlesTemp.
CheckLevel get_check_level()
Get the current audit mode.
A base class for ISD Restraints.
Various classes to hold sets of particles.
Support for output of models in mmCIF format.
Make CGAL functionality available to IMP.
std::string get_data_path(std::string file_name)
Return the full path to one of this module's data files.
Add symmetric attribute to a particle.
std::string get_example_path(std::string file_name)
Return the full path to one of this module's example files.
Add uncertainty to a particle.
Composable functors to implement scores via compile-time composition.
Code to compute statistical measures.
Add resolution to a particle.
def deprecated_pmi1_object
Mark a PMI1 class as deprecated.
std::string get_molecule_name_and_copy(atom::Hierarchy h)
Walk up a PMI2 hierarchy/representations and get the "molname.copynum".
RestraintSet * create_elastic_network(const Particles &ps, Float dist_cutoff, Float strength)
Create an elastic network restraint set.
A base class for classes which perturb particles.
An example singleton modifier.
A restraint for ambiguous cross-linking MS data and multiple state approach.
Simple sigmoidal score calculated between sphere surfaces.
Basic utilities for handling cryo-electron microscopy 3D density maps.
bool get_is_canonical(atom::Hierarchy h)
Walk up a PMI2 hierarchy/representations and check if the root is named System.
Interface to specialized Particle types (e.g. atoms)
std::ostream & show(Hierarchy h, std::ostream &out=std::cout)
Print the hierarchy using a given decorator to display each node.
def deprecated_object
Python decorator to mark a class as deprecated.
Basic functionality that is expected to be used by a wide variety of IMP users.
General purpose algebraic and geometric methods that are expected to be used by a wide variety of IMP...
double get_resolution(Model *m, ParticleIndex pi)
Estimate the resolution of the hierarchy as used by Representation.
Output IMP model data in various file formats.
Functionality for loading, creating, manipulating and scoring atomic structures.
Support for small angle X-ray scattering (SAXS) data.
void set_check_level(CheckLevel tf)
Control runtime checks in the code.
Inferential scoring building on methods developed as part of the Inferential Structure Determination ...
A restraint is a term in an IMP ScoringFunction.